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manta-0.23.0
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@ctsa ctsa released this 27 May 17:23
· 1133 commits to master since this release
v0.23.0
3640e14
  • MANTA-200 Add filter for overlapping diploid calls which can't be explained as two haplotypes.
  • MANTA-199 Fix low-frequency fragment/breakpoint mismatch (primarily an issue when large numbers of short ref contigs were used, eg. unplaced and unlocalized contigs)
  • Add CRAM support for individual tools - still need a quick chrom depth estimator for full workflow CRAM support
  • MANTA-185 remove transloc calls with neg position (from circular genome)
  • [mantadev] #1 Fix SA split read breakpoint position
  • MANTA-183 handle paired/single read mixture in input alignments
  • MANTA-182 submit config on cmdline
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