v0.5.13
Highlights
Fill table now allows for obsoletion rewiring
PR: #625
This fixes #625
given a table of single-cell data sc.tsv
:
dataset | term |
---|---|
sc-Martinotti | CL:4023067 |
sc-Martinotti | CL:4023027 |
Running
runoak -i sqlite:obo:cl fill-table --relation "{primary_key: term, dependent_column: replacement_term, relation: IAO:0100001}" --allow-missing tests/input/cl-obs.tsv sc.tsv
Will produce:
dataset | term | replacement_term |
---|---|---|
sc-Martinotti | CL:4023067 | PCL:1000004 |
sc-Martinotti | CL:4023027 |
Inclusion of ABox some-values-from assertions
PR: #624
Previously axioms like the anonymous Type assertion here we not included in the graph projection:
Now they are:
Logical Definition Analysis
What's Changed
- Make
ensure_strict_prefixes
default toFalse
inlexmatch
by @hrshdhgd in #601 - Improve descriptor processing for Gilda implementation by @cthoyt in #603
- Enable NER with Gilda by @cthoyt in #607
- Tools to analyze logical definitions by @cmungall in #610
- Fix broken link on README.md by @lubianat in #599
- Projecting anonymous type expressions to graph. Fixes #623 by @cmungall in #624
- Adding arbitrary properties to fill-table. Fixes #625 by @cmungall in #626
New Contributors
Full Changelog: v0.5.12...v0.5.13