Merge pull request #33 from VincentRouvreau/update_and_pandas

Update packages

Dockerfile_for_circleci_image

@@ -23,8 +23,8 @@ RUN apt update && apt install -y make \
 ADD build-requirements.txt /
 ADD test-requirements.txt /
 
-RUN pip3 install -r build-requirements.txt
-RUN pip3 --no-cache-dir install -r test-requirements.txt
+RUN python3 -m pip install --user -r build-requirements.txt
+RUN python3 -m pip --no-cache-dir install --user -r test-requirements.txt
 
 # Try to do the same layers as Dockerfile_for_circle_ci_image_without_cgal
 RUN apt install -y libeigen3-dev \

Dockerfile_for_circleci_image_without_cgal

@@ -23,12 +23,12 @@ RUN apt update && apt install -y make \
 ADD build-requirements.txt /
 ADD test-requirements.txt /
 
-RUN pip3 install -r build-requirements.txt
-RUN pip3 --no-cache-dir install -r test-requirements.txt
+RUN python3 -m pip install --user -r build-requirements.txt
+RUN python3 -m pip --no-cache-dir install --user -r test-requirements.txt
 
 # Try to do the same layers as Dockerfile_for_circle_ci_image
-RUN curl -LO "https://gitlab.com/libeigen/eigen/-/archive/3.3.9/eigen-3.3.9.tar.gz" \
-    && tar xf eigen-3.3.9.tar.gz
+RUN curl -LO "https://gitlab.com/libeigen/eigen/-/archive/3.4.0/eigen-3.4.0.tar.gz" \
+    && tar xf eigen-3.4.0.tar.gz
 
 # apt clean up
 RUN apt autoremove && rm -rf /var/lib/apt/lists/*

Dockerfile_for_pip

@@ -14,9 +14,9 @@ RUN mkdir -p /opt/cmake \
     && rm -f cmake-3.16.2-Linux-x86_64.sh
 
 # yum install boost-devel installs boost 1.53 and copy is the only way to install headers only boost
-RUN curl -LO "https://boostorg.jfrog.io/artifactory/main/release/1.82.0/source/boost_1_82_0.tar.gz" \
-    && tar xf boost_1_82_0.tar.gz \
-    && cd boost_1_82_0 \
+RUN curl -LO "https://boostorg.jfrog.io/artifactory/main/release/1.85.0/source/boost_1_85_0.tar.gz" \
+    && tar xf boost_1_85_0.tar.gz \
+    && cd boost_1_85_0 \
     && ./bootstrap.sh \
     && ls \
     && cp -r boost /usr/local/include/ \

install_cgal.sh

@@ -3,7 +3,7 @@
 # error management : https://dev.to/banks/stop-ignoring-errors-in-bash-3co5
 set -ue
 
-export CGAL_VERSION="5.4.1"
+export CGAL_VERSION="5.6.1"
 
 curl -LO "https://github.com/CGAL/cgal/releases/download/v${CGAL_VERSION}/CGAL-${CGAL_VERSION}.tar.xz"
 tar xf CGAL-${CGAL_VERSION}.tar.xz

test-requirements.txt

@@ -7,6 +7,7 @@ pydata-sphinx-theme>=0.8.0
 matplotlib
 scipy>=1.6.0
 scikit-learn>=0.24.0
+pandas # Required by scikit-learn >= 1.5.0 for fetch_openml
 POT
 tensorflow
 tensorflow-addons