Don't use our custom seqfetcher endpoint when running tests

.github/workflows/cicd.yml

@@ -28,7 +28,7 @@ jobs:
           args: --extend-ignore E501,E741
 
       - name: Run Tests
-        run: ./fetch_refseq.sh && python -m pytest
+        run: python -m pytest
 
   deploy:
     name: Deploy to dev

app/input_normalization.py

@@ -3,11 +3,14 @@
 import hgvs.assemblymapper
 import os
 from utilities.SPDI_Normalization import get_normalized_spdi
-
-# Set the HGVS_SEQREPO_URL env var so the hgvs library will use the local `utilities/seqfetcher` endpoint instead of
-# making NCBI API calls.
-port = os.getenv('PORT', 5000)  # The localhost debugger starts the app on port 5000
-os.environ['HGVS_SEQREPO_URL'] = f"http://localhost:{port}/utilities/seqfetcher"
+import sys
+
+# TODO: Figure out a way to launch this endpoint when running the tests
+if "pytest" not in sys.modules:
+    # Set the HGVS_SEQREPO_URL env var so the hgvs library will use the local `utilities/seqfetcher` endpoint instead of
+    # making NCBI API calls.
+    port = os.getenv('PORT', 5000)  # The localhost debugger starts the app on port 5000
+    os.environ['HGVS_SEQREPO_URL'] = f"http://localhost:{port}/utilities/seqfetcher"
 
 database_schema = os.getenv('UTA_DATABASE_SCHEMA', 'uta_20210129b')
 # Use the biocommons UTA database if we don't specify a custom one.