CI: Add a Cygwin CI run.

.github/workflows/cygwin.yml

@@ -0,0 +1,74 @@
+name: Cygwin Tests
+
+on:
+ push:
+ branches:
+ - main
+ - maintenance/**
+ pull_request:
+ branches:
+ - main
+ - maintenance/**
+ workflow_dispatch:
+
+concurrency:
+ group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
+ cancel-in-progress: true
+
+jobs:
+ cygwin:
+ name: Cygwin tests
+ runs-on: windows-latest
+ env:
+ SHELLOPTS: igncr
+ CHERE_INVOKING: 1
+ CYGWIN_NOWINPATH: 1
+ PYTHONPATH: /usr/local/lib/python3.9/site-packages
+ steps:
+ - run: git config --global core.autocrlf input
+ - uses: actions/checkout@v3
+ with:
+ submodules: recursive
+ - uses: cygwin/cygwin-install-action@v2
+ with:
+ packages: >-
+ gcc-g++ gcc-fortran liblapack-devel libopenblas libmpfr-devel ccache swig libmpc-devel
+ libumfpack-devel libsliplu-devel libldl-devel libklu-devel libcxsparse-devel libcholmod-devel libamd-devel
+ python39-devel python39-pip python39-setuptools python39-wheel python39-numpy python39-cython
+ python39-pytest
+ meson ninja cmake make git
+ - name: Fix git config
+ shell: bash.exe -eo pipefail -o igncr "{0}"
+ run: /usr/bin/git config --system --add safe.directory /cygdrive/d/a/*/scipy
+ - name: pip cache
+ uses: actions/cache@v4
+ with:
+ path: 'C:\cygwin\home\runneradmin\.cache\pip'
+ key: ${{ runner.os }}-cygwin-pip3.9-${{ hashFiles('.github/workflows/cygwin.yml') }}
+ restore-keys: |
+ ${{ runner.os }}-cygwin-pip3.9-
+ - name: Install Python dependencies
+ shell: bash.exe -eo pipefail -o igncr "{0}"
+ run: |
+ mkdir builds
+ cd builds
+ python3.9 -m pip install --upgrade pip 'setuptools<60' wheel
+ python3.9 -m pip install --upgrade numpy cython pytest pytest-xdist pytest-timeout pybind11
+ python3.9 -m pip install --upgrade mpmath gmpy2 pythran threadpoolctl pooch click doit rich-click pydevtool
+ python3.9 -m pip uninstall -y nose
+ cd ..
+ - name: Check NumPy import
+ shell: bash.exe -eo pipefail -o igncr "{0}"
+ run: /usr/bin/env PATH="/bin:/usr/bin:/usr/local/bin:/usr/lib/lapack" python3.9 -c "import numpy as np; print(np.__version__)"
+ - name: Building SciPy
+ shell: bash.exe -eo pipefail -o igncr "{0}"
+ run: /usr/bin/env PATH="/bin:/usr/bin:/usr/local/bin:/usr/lib/lapack" python3.9 -u dev.py build --show-build-log
+ - name: Check SciPy installs
+ shell: bash.exe -eo pipefail -o igncr "{0}"
+ if: false
+ run: /usr/bin/env PATH="/bin:/usr/bin:/usr/local/bin:/usr/lib/lapack" python3.9 -m pip install -e .
+ - name: Testing SciPy
+ shell: bash.exe -eo pipefail -o igncr "{0}"
+ run: |
+ /usr/bin/env PATH="/bin:/usr/bin:/usr/local/bin:/usr/lib/lapack" python3.9 -u dev.py test --durations=10 -j2 -m fast -b numpy -- -rfEX --timeout=60 2>&1 | tee runtests.log
+ python3.8 tools/validate_runtests_log.py fast < runtests.log

scipy/io/_fast_matrix_market/src/_fmm_core.cpp

@@ -2,6 +2,8 @@
 // Use of this source code is governed by the BSD 2-clause license found in the LICENSE.txt file.
 // SPDX-License-Identifier: BSD-2-Clause
 
+#include "_fmm_core.hpp"
+
 #include <fast_matrix_market/types.hpp>
 #include <cstdint>
 namespace fast_matrix_market {
@@ -16,8 +18,6 @@ namespace fast_matrix_market {
 }
 #include <fast_matrix_market/fast_matrix_market.hpp>
 
-#include "_fmm_core.hpp"
-
 ////////////////////////////////////////////////
 //// Header methods
 ////////////////////////////////////////////////

scipy/special/_wright.cxx

@@ -1,7 +1,7 @@
-#include <complex>
-
 #include "_wright.h"
 
+#include <complex>
+
 using namespace std;
 
 extern "C" {