Tests #257
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# Based on github template: https://github.com/actions/starter-workflows/blob/main/ci/python-package.yml | |
name: Tests | |
on: | |
schedule: | |
- cron: '0 9 * * 1' # run every Monday at 9 AM UTC (3 am PST) | |
push: | |
pull_request: | |
workflow_dispatch: | |
jobs: | |
build: | |
name: ${{ matrix.python-version }}, ${{ matrix.os }} | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ ubuntu-latest, macos-latest, windows-latest ] | |
python-version: ['3.11', '3.10', '3.9'] # ['3.8', '3.x'] | |
exclude: | |
# tests with ubuntu-latest, python latest | |
# are executed by build_docs.yaml | |
- os: ubuntu-latest | |
python-version: 3.10 | |
steps: | |
- name: Checkout source | |
uses: actions/checkout@v2 | |
with: | |
persist-credentials: false | |
- name: Fetch all Git tags | |
run: git fetch --prune --unshallow --tags | |
- name: Cache Miniconda | |
uses: actions/cache@v2.1.0 | |
env: | |
# Increase this value to reset cache if environment.yml has changed | |
CACHE_NUMBER: 0 | |
with: | |
path: ~/conda_pkgs_dir | |
key: ${{ runner.os }}-${{ matrix.python-version }}-${{ | |
matrix.run-type }}-${{ env.CACHE_NUMBER }}-${{ | |
hashFiles('ci/test_environment.yaml') }} | |
- name: Setup conda environment | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
auto-update-conda: true | |
activate-environment: mfsetup_ci | |
environment-file: ci/test_environment.yaml | |
python-version: ${{ matrix.python-version }} | |
#condarc-file: ci/example-condarc.yml | |
auto-activate-base: false | |
use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly! | |
- name: Conda info | |
shell: bash -l {0} | |
run: conda info | |
- name: Add executables to path | |
shell: bash | |
run: | | |
if [[ ! -d "$HOME/.local/bin" ]]; then | |
mkdir -p "$HOME/.local/bin"; | |
fi | |
# copy modflow bins to local dir to add to PATH later | |
if [ "$RUNNER_OS" == "Windows" ]; then | |
d="win" | |
elif [ "$RUNNER_OS" == "macOS" ]; then | |
d="mac" | |
elif [ "$RUNNER_OS" == "Linux" ]; then | |
d="linux" | |
else | |
d="unexpectedos" | |
exit 1 | |
fi | |
cp -r bin/$d/. "$HOME/.local/bin/" | |
echo "$HOME/.local/bin" >> $GITHUB_PATH | |
echo $GITHUB_PATH | |
- name: Test install from git | |
shell: bash -l {0} | |
run: | | |
pip install git+https://github.com/aleaf/modflow-setup@develop | |
cd .. | |
python -c "import mfsetup" | |
cd modflow-setup | |
- name: Install Modflow-setup and ipykernel | |
shell: bash -l {0} | |
run: | | |
pip install -e . | |
python -m ipykernel install --user --name mfsetup_ci --display-name "mfsetup_ci" | |
- name: Conda list | |
shell: bash -l {0} | |
run: conda list | |
#- name: Lint with flake8 | |
# run: | | |
# # stop the build if there are Python syntax errors or undefined names | |
# flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
# # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
# flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
- name: Run tests and upload coverage | |
shell: bash -l {0} | |
run: | | |
coverage run -m pytest -v --durations=20 | |
coverage report -m | |
codecov |