Update HCP_dat_func.R

CogBrainHealthLab · Jun 25, 2024 · 0ecc745 · 0ecc745
1 parent 9a93db1
commit 0ecc745
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/R/HCP_dat_func.R b/R/HCP_dat_func.R
@@ -216,11 +216,11 @@ extractFC=function(wb_path,
   ciftiTools::ciftiTools.setOption('wb_path', wb_path)
 
   ##atlas checks
-  if(is.na(match(atlas,(1:10)*100)))  {stop("Atlas should be a multiple of 100 from 100 to 1000")}
+  if(is.na(match(atlas,(1:10)*100)))  {stop("\nAtlas should be a multiple of 100 from 100 to 1000")}
     #download atlas template if it is missing
     if(!file.exists(paste(system.file(package='FCtools'),"/data/Schaefer2018_",atlas,"Parcels_7Networks_order.dlabel.nii",sep="")))
     {
-      cat(paste("The",paste("Schaefer2018_",atlas,"Parcels_7Networks_order.dlabel.nii",sep=""),"template file does not exist and will be downloaded\n"),sep=" ")
+      cat(paste("\nThe",paste("Schaefer2018_",atlas,"Parcels_7Networks_order.dlabel.nii",sep=""),"template file does not exist and will be downloaded\n"),sep=" ")
       download.file(url=paste0("https://raw.githubusercontent.com/ThomasYeoLab/CBIG/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/HCP/fslr32k/cifti/Schaefer2018_",atlas,"Parcels_7Networks_order.dlabel.nii"),
                     destfile =paste(system.file(package='FCtools'),"/data/Schaefer2018_",atlas,"Parcels_7Networks_order.dlabel.nii",sep=""),mode = "wb")