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73 changes: 73 additions & 0 deletions log-files/2024-09-07_08-54-51/Test1D3DLinearEllipticSolver_valgrind.txt
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==24915== Memcheck, a memory error detector
==24915== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==24915== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==24915== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/Test1D3DLinearEllipticSolver -malloc_debug -malloc_dump -memory_info
==24915== Parent PID: 23903
==24915==
==24915==
==24915== FILE DESCRIPTORS: 9 open (3 std) at exit.
==24915== Open file descriptor 12:
==24915== at 0x84E707D: pipe (pipe.c:29)
==24915== by 0x104D507D: ???
==24915== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==24915== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24915== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24915== by 0x6AACD38: PetscInitialize (pinit.c:924)
==24915== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==24915== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==24915== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==24915== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==24915== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==24915== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==24915== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==24915== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18)
==24915==
==24915== Open file descriptor 8: /dev/shm/open_mpi.0000
==24915== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39)
==24915== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==24915== by 0x7D3B822: ???
==24915== by 0x7D3B96F: ???
==24915== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24915== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24915== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24915== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==24915== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24915== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24915== by 0x6AACD38: PetscInitialize (pinit.c:924)
==24915== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==24915== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==24915== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==24915== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==24915== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==24915== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==24915== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==24915== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18)
==24915==
==24915== Open file descriptor 115:
==24915== <inherited from parent>
==24915==
==24915== Open file descriptor 112:
==24915== <inherited from parent>
==24915==
==24915== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1D3DLinearEllipticSolver_valgrind.txt
==24915== <inherited from parent>
==24915==
==24915== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==24915== <inherited from parent>
==24915==
==24915==
==24915== HEAP SUMMARY:
==24915== in use at exit: 618,254 bytes in 8,238 blocks
==24915== total heap usage: 51,119 allocs, 42,881 frees, 1,339,258,637 bytes allocated
==24915==
==24915== LEAK SUMMARY:
==24915== definitely lost: 0 bytes in 0 blocks
==24915== indirectly lost: 0 bytes in 0 blocks
==24915== possibly lost: 0 bytes in 0 blocks
==24915== still reachable: 24 bytes in 2 blocks
==24915== suppressed: 618,230 bytes in 8,236 blocks
==24915== Reachable blocks (those to which a pointer was found) are not shown.
==24915== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==24915==
==24915== For lists of detected and suppressed errors, rerun with: -s
==24915== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)
73 changes: 73 additions & 0 deletions log-files/2024-09-07_08-54-51/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt
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==43290== Memcheck, a memory error detector
==43290== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==43290== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==43290== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/Test1dMonodomainShannonCvodeBenchmarks -malloc_debug -malloc_dump -memory_info
==43290== Parent PID: 23903
==43290==
==43290==
==43290== FILE DESCRIPTORS: 9 open (3 std) at exit.
==43290== Open file descriptor 12:
==43290== at 0xA7C307D: pipe (pipe.c:29)
==43290== by 0x1432407D: ???
==43290== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==43290== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43290== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43290== by 0xAB4CD38: PetscInitialize (pinit.c:924)
==43290== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43290== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43290== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==43290== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43290== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43290== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43290== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43290== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18)
==43290==
==43290== Open file descriptor 8: /dev/shm/open_mpi.0000
==43290== at 0xA7C7A1C: __open_nocancel (open64_nocancel.c:39)
==43290== by 0xA74BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==43290== by 0xA0E4822: ???
==43290== by 0xA0E496F: ???
==43290== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43290== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43290== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43290== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==43290== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43290== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43290== by 0xAB4CD38: PetscInitialize (pinit.c:924)
==43290== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43290== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43290== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==43290== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43290== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43290== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43290== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43290== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18)
==43290==
==43290== Open file descriptor 115:
==43290== <inherited from parent>
==43290==
==43290== Open file descriptor 112:
==43290== <inherited from parent>
==43290==
==43290== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt
==43290== <inherited from parent>
==43290==
==43290== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==43290== <inherited from parent>
==43290==
==43290==
==43290== HEAP SUMMARY:
==43290== in use at exit: 618,743 bytes in 8,244 blocks
==43290== total heap usage: 319,600 allocs, 311,356 frees, 1,398,098,396 bytes allocated
==43290==
==43290== LEAK SUMMARY:
==43290== definitely lost: 0 bytes in 0 blocks
==43290== indirectly lost: 0 bytes in 0 blocks
==43290== possibly lost: 0 bytes in 0 blocks
==43290== still reachable: 24 bytes in 2 blocks
==43290== suppressed: 618,719 bytes in 8,242 blocks
==43290== Reachable blocks (those to which a pointer was found) are not shown.
==43290== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==43290==
==43290== For lists of detected and suppressed errors, rerun with: -s
==43290== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 42 from 34)
73 changes: 73 additions & 0 deletions log-files/2024-09-07_08-54-51/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt
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Original file line number Diff line number Diff line change
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==26100== Memcheck, a memory error detector
==26100== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==26100== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==26100== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info
==26100== Parent PID: 23903
==26100==
==26100==
==26100== FILE DESCRIPTORS: 9 open (3 std) at exit.
==26100== Open file descriptor 12:
==26100== at 0xF7F907D: pipe (pipe.c:29)
==26100== by 0x196AD07D: ???
==26100== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==26100== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26100== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26100== by 0x10127D38: PetscInitialize (pinit.c:924)
==26100== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26100== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26100== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26100== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26100== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26100== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26100== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26100== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==26100==
==26100== Open file descriptor 8: /dev/shm/open_mpi.0000
==26100== at 0xF7FDA1C: __open_nocancel (open64_nocancel.c:39)
==26100== by 0xF781BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==26100== by 0xF136822: ???
==26100== by 0xF13696F: ???
==26100== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26100== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26100== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26100== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==26100== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26100== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26100== by 0x10127D38: PetscInitialize (pinit.c:924)
==26100== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26100== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26100== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26100== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26100== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26100== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26100== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26100== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==26100==
==26100== Open file descriptor 115:
==26100== <inherited from parent>
==26100==
==26100== Open file descriptor 112:
==26100== <inherited from parent>
==26100==
==26100== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt
==26100== <inherited from parent>
==26100==
==26100== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==26100== <inherited from parent>
==26100==
==26100==
==26100== HEAP SUMMARY:
==26100== in use at exit: 618,350 bytes in 8,239 blocks
==26100== total heap usage: 1,124,534 allocs, 1,116,295 frees, 1,415,927,715 bytes allocated
==26100==
==26100== LEAK SUMMARY:
==26100== definitely lost: 0 bytes in 0 blocks
==26100== indirectly lost: 0 bytes in 0 blocks
==26100== possibly lost: 0 bytes in 0 blocks
==26100== still reachable: 56 bytes in 3 blocks
==26100== suppressed: 618,294 bytes in 8,236 blocks
==26100== Reachable blocks (those to which a pointer was found) are not shown.
==26100== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==26100==
==26100== For lists of detected and suppressed errors, rerun with: -s
==26100== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)
73 changes: 73 additions & 0 deletions log-files/2024-09-07_08-54-51/TestAbstractAnalyticJacobian_valgrind.txt
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@@ -0,0 +1,73 @@
==24833== Memcheck, a memory error detector
==24833== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==24833== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==24833== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractAnalyticJacobian -malloc_debug -malloc_dump -memory_info
==24833== Parent PID: 23903
==24833==
==24833==
==24833== FILE DESCRIPTORS: 9 open (3 std) at exit.
==24833== Open file descriptor 12:
==24833== at 0x4F1007D: pipe (pipe.c:29)
==24833== by 0xB1E607D: ???
==24833== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==24833== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24833== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24833== by 0x5308D38: PetscInitialize (pinit.c:924)
==24833== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==24833== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==24833== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==24833== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==24833== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==24833== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==24833== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==24833== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18)
==24833==
==24833== Open file descriptor 8: /dev/shm/open_mpi.0000
==24833== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39)
==24833== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==24833== by 0x4B76822: ???
==24833== by 0x4B7696F: ???
==24833== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24833== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24833== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24833== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==24833== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24833== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24833== by 0x5308D38: PetscInitialize (pinit.c:924)
==24833== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==24833== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==24833== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==24833== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==24833== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==24833== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==24833== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==24833== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18)
==24833==
==24833== Open file descriptor 115:
==24833== <inherited from parent>
==24833==
==24833== Open file descriptor 112:
==24833== <inherited from parent>
==24833==
==24833== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractAnalyticJacobian_valgrind.txt
==24833== <inherited from parent>
==24833==
==24833== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==24833== <inherited from parent>
==24833==
==24833==
==24833== HEAP SUMMARY:
==24833== in use at exit: 617,902 bytes in 8,238 blocks
==24833== total heap usage: 45,031 allocs, 36,793 frees, 1,338,170,049 bytes allocated
==24833==
==24833== LEAK SUMMARY:
==24833== definitely lost: 0 bytes in 0 blocks
==24833== indirectly lost: 0 bytes in 0 blocks
==24833== possibly lost: 0 bytes in 0 blocks
==24833== still reachable: 24 bytes in 2 blocks
==24833== suppressed: 617,878 bytes in 8,236 blocks
==24833== Reachable blocks (those to which a pointer was found) are not shown.
==24833== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==24833==
==24833== For lists of detected and suppressed errors, rerun with: -s
==24833== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)
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