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upload memtest results
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github-action committed Aug 11, 2023
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73 changes: 73 additions & 0 deletions log-files/2023-08-11_14-21-33/Test1D3DLinearEllipticSolver_valgrind.txt
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==740670== Memcheck, a memory error detector
==740670== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==740670== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==740670== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/Test1D3DLinearEllipticSolver -malloc_debug -malloc_dump -memory_info
==740670== Parent PID: 739035
==740670==
==740670==
==740670== FILE DESCRIPTORS: 9 open (3 std) at exit.
==740670== Open file descriptor 12:
==740670== at 0x813F22D: pipe (pipe.c:29)
==740670== by 0x1012F07D: ???
==740670== by 0xBFC94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==740670== by 0x87A5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==740670== by 0x873ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==740670== by 0x6707D38: PetscInitialize (pinit.c:924)
==740670== by 0x65DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==740670== by 0x65DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==740670== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==740670== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==740670== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==740670== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==740670== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==740670== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18)
==740670==
==740670== Open file descriptor 8: /dev/shm/open_mpi.0000
==740670== at 0x8143BCC: __open_nocancel (open64_nocancel.c:39)
==740670== by 0x80C7C4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==740670== by 0x7991822: ???
==740670== by 0x799196F: ???
==740670== by 0xC06E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==740670== by 0xC06E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==740670== by 0xC024922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==740670== by 0xBFC92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==740670== by 0x87A5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==740670== by 0x873ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==740670== by 0x6707D38: PetscInitialize (pinit.c:924)
==740670== by 0x65DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==740670== by 0x65DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==740670== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==740670== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==740670== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==740670== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==740670== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==740670== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18)
==740670==
==740670== Open file descriptor 116:
==740670== <inherited from parent>
==740670==
==740670== Open file descriptor 112:
==740670== <inherited from parent>
==740670==
==740670== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1D3DLinearEllipticSolver_valgrind.txt
==740670== <inherited from parent>
==740670==
==740670== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==740670== <inherited from parent>
==740670==
==740670==
==740670== HEAP SUMMARY:
==740670== in use at exit: 700,658 bytes in 9,377 blocks
==740670== total heap usage: 53,237 allocs, 43,860 frees, 1,354,319,032 bytes allocated
==740670==
==740670== LEAK SUMMARY:
==740670== definitely lost: 0 bytes in 0 blocks
==740670== indirectly lost: 0 bytes in 0 blocks
==740670== possibly lost: 0 bytes in 0 blocks
==740670== still reachable: 24 bytes in 2 blocks
==740670== suppressed: 700,634 bytes in 9,375 blocks
==740670== Reachable blocks (those to which a pointer was found) are not shown.
==740670== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==740670==
==740670== For lists of detected and suppressed errors, rerun with: -s
==740670== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)
73 changes: 73 additions & 0 deletions log-files/2023-08-11_14-21-33/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt
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Original file line number Diff line number Diff line change
@@ -0,0 +1,73 @@
==758488== Memcheck, a memory error detector
==758488== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==758488== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==758488== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/Test1dMonodomainShannonCvodeBenchmarks -malloc_debug -malloc_dump -memory_info
==758488== Parent PID: 739035
==758488==
==758488==
==758488== FILE DESCRIPTORS: 9 open (3 std) at exit.
==758488== Open file descriptor 12:
==758488== at 0xA41E22D: pipe (pipe.c:29)
==758488== by 0x13F8107D: ???
==758488== by 0xF78D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==758488== by 0xBB16418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==758488== by 0xBAAFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==758488== by 0xA7A6D38: PetscInitialize (pinit.c:924)
==758488== by 0x9D09153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==758488== by 0x9D091A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==758488== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==758488== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==758488== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==758488== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==758488== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==758488== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18)
==758488==
==758488== Open file descriptor 8: /dev/shm/open_mpi.0000
==758488== at 0xA422BCC: __open_nocancel (open64_nocancel.c:39)
==758488== by 0xA3A6C4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==758488== by 0x9D3D822: ???
==758488== by 0x9D3D96F: ???
==758488== by 0xF8326DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==758488== by 0xF832938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==758488== by 0xF7E8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==758488== by 0xF78D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==758488== by 0xBB16418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==758488== by 0xBAAFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==758488== by 0xA7A6D38: PetscInitialize (pinit.c:924)
==758488== by 0x9D09153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==758488== by 0x9D091A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==758488== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==758488== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==758488== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==758488== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==758488== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==758488== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18)
==758488==
==758488== Open file descriptor 116:
==758488== <inherited from parent>
==758488==
==758488== Open file descriptor 112:
==758488== <inherited from parent>
==758488==
==758488== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt
==758488== <inherited from parent>
==758488==
==758488== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==758488== <inherited from parent>
==758488==
==758488==
==758488== HEAP SUMMARY:
==758488== in use at exit: 701,150 bytes in 9,383 blocks
==758488== total heap usage: 321,754 allocs, 312,371 frees, 1,413,143,551 bytes allocated
==758488==
==758488== LEAK SUMMARY:
==758488== definitely lost: 0 bytes in 0 blocks
==758488== indirectly lost: 0 bytes in 0 blocks
==758488== possibly lost: 0 bytes in 0 blocks
==758488== still reachable: 24 bytes in 2 blocks
==758488== suppressed: 701,126 bytes in 9,381 blocks
==758488== Reachable blocks (those to which a pointer was found) are not shown.
==758488== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==758488==
==758488== For lists of detected and suppressed errors, rerun with: -s
==758488== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 42 from 34)
73 changes: 73 additions & 0 deletions log-files/2023-08-11_14-21-33/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt
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Original file line number Diff line number Diff line change
@@ -0,0 +1,73 @@
==742177== Memcheck, a memory error detector
==742177== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==742177== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==742177== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info
==742177== Parent PID: 739035
==742177==
==742177==
==742177== FILE DESCRIPTORS: 9 open (3 std) at exit.
==742177== Open file descriptor 12:
==742177== at 0xEB4E22D: pipe (pipe.c:29)
==742177== by 0x18A0707D: ???
==742177== by 0x140084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==742177== by 0x107EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==742177== by 0x10787D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==742177== by 0xF47ED38: PetscInitialize (pinit.c:924)
==742177== by 0xE455153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==742177== by 0xE4551A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==742177== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==742177== by 0x11D92D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==742177== by 0x11FD1C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==742177== by 0x11FBBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==742177== by 0x120253: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==742177== by 0x11BD55: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==742177==
==742177== Open file descriptor 8: /dev/shm/open_mpi.0000
==742177== at 0xEB52BCC: __open_nocancel (open64_nocancel.c:39)
==742177== by 0xEAD6C4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==742177== by 0xE489822: ???
==742177== by 0xE48996F: ???
==742177== by 0x140AD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==742177== by 0x140AD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==742177== by 0x14063922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==742177== by 0x140082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==742177== by 0x107EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==742177== by 0x10787D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==742177== by 0xF47ED38: PetscInitialize (pinit.c:924)
==742177== by 0xE455153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==742177== by 0xE4551A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==742177== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==742177== by 0x11D92D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==742177== by 0x11FD1C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==742177== by 0x11FBBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==742177== by 0x120253: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==742177== by 0x11BD55: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==742177==
==742177== Open file descriptor 116:
==742177== <inherited from parent>
==742177==
==742177== Open file descriptor 112:
==742177== <inherited from parent>
==742177==
==742177== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt
==742177== <inherited from parent>
==742177==
==742177== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==742177== <inherited from parent>
==742177==
==742177==
==742177== HEAP SUMMARY:
==742177== in use at exit: 700,754 bytes in 9,378 blocks
==742177== total heap usage: 1,126,591 allocs, 1,117,213 frees, 1,431,023,962 bytes allocated
==742177==
==742177== LEAK SUMMARY:
==742177== definitely lost: 0 bytes in 0 blocks
==742177== indirectly lost: 0 bytes in 0 blocks
==742177== possibly lost: 0 bytes in 0 blocks
==742177== still reachable: 56 bytes in 3 blocks
==742177== suppressed: 700,698 bytes in 9,375 blocks
==742177== Reachable blocks (those to which a pointer was found) are not shown.
==742177== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==742177==
==742177== For lists of detected and suppressed errors, rerun with: -s
==742177== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)
73 changes: 73 additions & 0 deletions log-files/2023-08-11_14-21-33/TestAbstractAnalyticJacobian_valgrind.txt
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,73 @@
==740509== Memcheck, a memory error detector
==740509== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==740509== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==740509== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractAnalyticJacobian -malloc_debug -malloc_dump -memory_info
==740509== Parent PID: 739035
==740509==
==740509==
==740509== FILE DESCRIPTORS: 9 open (3 std) at exit.
==740509== Open file descriptor 12:
==740509== at 0x4F0D22D: pipe (pipe.c:29)
==740509== by 0xB1E507D: ???
==740509== by 0x8CDA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==740509== by 0x6674418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==740509== by 0x660DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==740509== by 0x5304D38: PetscInitialize (pinit.c:924)
==740509== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==740509== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==740509== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==740509== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==740509== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==740509== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==740509== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==740509== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18)
==740509==
==740509== Open file descriptor 8: /dev/shm/open_mpi.0000
==740509== at 0x4F11BCC: __open_nocancel (open64_nocancel.c:39)
==740509== by 0x4E95C4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==740509== by 0x4B71822: ???
==740509== by 0x4B7196F: ???
==740509== by 0x8D7F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==740509== by 0x8D7F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==740509== by 0x8D35922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==740509== by 0x8CDA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==740509== by 0x6674418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==740509== by 0x660DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==740509== by 0x5304D38: PetscInitialize (pinit.c:924)
==740509== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==740509== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==740509== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==740509== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==740509== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==740509== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==740509== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==740509== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18)
==740509==
==740509== Open file descriptor 116:
==740509== <inherited from parent>
==740509==
==740509== Open file descriptor 112:
==740509== <inherited from parent>
==740509==
==740509== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractAnalyticJacobian_valgrind.txt
==740509== <inherited from parent>
==740509==
==740509== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==740509== <inherited from parent>
==740509==
==740509==
==740509== HEAP SUMMARY:
==740509== in use at exit: 700,322 bytes in 9,377 blocks
==740509== total heap usage: 47,310 allocs, 37,933 frees, 1,353,245,126 bytes allocated
==740509==
==740509== LEAK SUMMARY:
==740509== definitely lost: 0 bytes in 0 blocks
==740509== indirectly lost: 0 bytes in 0 blocks
==740509== possibly lost: 0 bytes in 0 blocks
==740509== still reachable: 24 bytes in 2 blocks
==740509== suppressed: 700,298 bytes in 9,375 blocks
==740509== Reachable blocks (those to which a pointer was found) are not shown.
==740509== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==740509==
==740509== For lists of detected and suppressed errors, rerun with: -s
==740509== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)
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