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73 changes: 73 additions & 0 deletions log-files/2024-03-07_10-02-39/Test1D3DLinearEllipticSolver_valgrind.txt
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==24964== Memcheck, a memory error detector
==24964== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==24964== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==24964== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/Test1D3DLinearEllipticSolver -malloc_debug -malloc_dump -memory_info
==24964== Parent PID: 24022
==24964==
==24964==
==24964== FILE DESCRIPTORS: 9 open (3 std) at exit.
==24964== Open file descriptor 12:
==24964== at 0x852C07D: pipe (pipe.c:29)
==24964== by 0x104EF07D: ???
==24964== by 0xC3BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==24964== by 0x8B91418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24964== by 0x8B2AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24964== by 0x6AACD38: PetscInitialize (pinit.c:924)
==24964== by 0x69832DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==24964== by 0x698332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==24964== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==24964== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==24964== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==24964== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==24964== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==24964== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18)
==24964==
==24964== Open file descriptor 8: /dev/shm/open_mpi.0000
==24964== at 0x8530A1C: __open_nocancel (open64_nocancel.c:39)
==24964== by 0x84B4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==24964== by 0x7D3B822: ???
==24964== by 0x7D3B96F: ???
==24964== by 0xC4616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24964== by 0xC461938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24964== by 0xC417922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24964== by 0xC3BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==24964== by 0x8B91418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24964== by 0x8B2AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24964== by 0x6AACD38: PetscInitialize (pinit.c:924)
==24964== by 0x69832DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==24964== by 0x698332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==24964== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==24964== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==24964== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==24964== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==24964== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==24964== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18)
==24964==
==24964== Open file descriptor 113:
==24964== <inherited from parent>
==24964==
==24964== Open file descriptor 110:
==24964== <inherited from parent>
==24964==
==24964== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1D3DLinearEllipticSolver_valgrind.txt
==24964== <inherited from parent>
==24964==
==24964== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==24964== <inherited from parent>
==24964==
==24964==
==24964== HEAP SUMMARY:
==24964== in use at exit: 618,338 bytes in 8,239 blocks
==24964== total heap usage: 51,117 allocs, 42,878 frees, 1,339,251,058 bytes allocated
==24964==
==24964== LEAK SUMMARY:
==24964== definitely lost: 0 bytes in 0 blocks
==24964== indirectly lost: 0 bytes in 0 blocks
==24964== possibly lost: 0 bytes in 0 blocks
==24964== still reachable: 120 bytes in 3 blocks
==24964== suppressed: 618,218 bytes in 8,236 blocks
==24964== Reachable blocks (those to which a pointer was found) are not shown.
==24964== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==24964==
==24964== For lists of detected and suppressed errors, rerun with: -s
==24964== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)
73 changes: 73 additions & 0 deletions log-files/2024-03-07_10-02-39/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt
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==43268== Memcheck, a memory error detector
==43268== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==43268== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==43268== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/Test1dMonodomainShannonCvodeBenchmarks -malloc_debug -malloc_dump -memory_info
==43268== Parent PID: 24022
==43268==
==43268==
==43268== FILE DESCRIPTORS: 9 open (3 std) at exit.
==43268== Open file descriptor 12:
==43268== at 0xA80807D: pipe (pipe.c:29)
==43268== by 0x1433E07D: ???
==43268== by 0xFB7B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==43268== by 0xBF01418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43268== by 0xBE9AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43268== by 0xAB91D38: PetscInitialize (pinit.c:924)
==43268== by 0xA0AA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43268== by 0xA0AA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43268== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==43268== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43268== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43268== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43268== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43268== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18)
==43268==
==43268== Open file descriptor 8: /dev/shm/open_mpi.0000
==43268== at 0xA80CA1C: __open_nocancel (open64_nocancel.c:39)
==43268== by 0xA790BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==43268== by 0xA0E4822: ???
==43268== by 0xA0E496F: ???
==43268== by 0xFC206DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43268== by 0xFC20938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43268== by 0xFBD6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43268== by 0xFB7B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==43268== by 0xBF01418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43268== by 0xBE9AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43268== by 0xAB91D38: PetscInitialize (pinit.c:924)
==43268== by 0xA0AA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43268== by 0xA0AA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43268== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==43268== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43268== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43268== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43268== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43268== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18)
==43268==
==43268== Open file descriptor 113:
==43268== <inherited from parent>
==43268==
==43268== Open file descriptor 110:
==43268== <inherited from parent>
==43268==
==43268== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt
==43268== <inherited from parent>
==43268==
==43268== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==43268== <inherited from parent>
==43268==
==43268==
==43268== HEAP SUMMARY:
==43268== in use at exit: 618,825 bytes in 8,245 blocks
==43268== total heap usage: 319,598 allocs, 311,353 frees, 1,398,090,682 bytes allocated
==43268==
==43268== LEAK SUMMARY:
==43268== definitely lost: 0 bytes in 0 blocks
==43268== indirectly lost: 0 bytes in 0 blocks
==43268== possibly lost: 0 bytes in 0 blocks
==43268== still reachable: 120 bytes in 3 blocks
==43268== suppressed: 618,705 bytes in 8,242 blocks
==43268== Reachable blocks (those to which a pointer was found) are not shown.
==43268== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==43268==
==43268== For lists of detected and suppressed errors, rerun with: -s
==43268== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 42 from 34)
73 changes: 73 additions & 0 deletions log-files/2024-03-07_10-02-39/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt
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==26138== Memcheck, a memory error detector
==26138== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==26138== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==26138== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info
==26138== Parent PID: 24022
==26138==
==26138==
==26138== FILE DESCRIPTORS: 9 open (3 std) at exit.
==26138== Open file descriptor 12:
==26138== at 0xF83C07D: pipe (pipe.c:29)
==26138== by 0x196C507D: ???
==26138== by 0x14D034CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==26138== by 0x114DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26138== by 0x11475D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26138== by 0x1016AD38: PetscInitialize (pinit.c:924)
==26138== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26138== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26138== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26138== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26138== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26138== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26138== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26138== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==26138==
==26138== Open file descriptor 8: /dev/shm/open_mpi.0000
==26138== at 0xF840A1C: __open_nocancel (open64_nocancel.c:39)
==26138== by 0xF7C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==26138== by 0xF134822: ???
==26138== by 0xF13496F: ???
==26138== by 0x14DA86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26138== by 0x14DA8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26138== by 0x14D5E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26138== by 0x14D032DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==26138== by 0x114DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26138== by 0x11475D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26138== by 0x1016AD38: PetscInitialize (pinit.c:924)
==26138== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26138== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26138== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26138== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26138== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26138== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26138== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26138== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==26138==
==26138== Open file descriptor 113:
==26138== <inherited from parent>
==26138==
==26138== Open file descriptor 110:
==26138== <inherited from parent>
==26138==
==26138== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt
==26138== <inherited from parent>
==26138==
==26138== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==26138== <inherited from parent>
==26138==
==26138==
==26138== HEAP SUMMARY:
==26138== in use at exit: 618,434 bytes in 8,240 blocks
==26138== total heap usage: 1,124,532 allocs, 1,116,292 frees, 1,415,921,529 bytes allocated
==26138==
==26138== LEAK SUMMARY:
==26138== definitely lost: 0 bytes in 0 blocks
==26138== indirectly lost: 0 bytes in 0 blocks
==26138== possibly lost: 0 bytes in 0 blocks
==26138== still reachable: 152 bytes in 4 blocks
==26138== suppressed: 618,282 bytes in 8,236 blocks
==26138== Reachable blocks (those to which a pointer was found) are not shown.
==26138== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==26138==
==26138== For lists of detected and suppressed errors, rerun with: -s
==26138== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)
73 changes: 73 additions & 0 deletions log-files/2024-03-07_10-02-39/TestAbstractAnalyticJacobian_valgrind.txt
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Original file line number Diff line number Diff line change
@@ -0,0 +1,73 @@
==24888== Memcheck, a memory error detector
==24888== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==24888== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==24888== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractAnalyticJacobian -malloc_debug -malloc_dump -memory_info
==24888== Parent PID: 24022
==24888==
==24888==
==24888== FILE DESCRIPTORS: 9 open (3 std) at exit.
==24888== Open file descriptor 12:
==24888== at 0x4F5507D: pipe (pipe.c:29)
==24888== by 0xB1FE07D: ???
==24888== by 0x8D2E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==24888== by 0x66BD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24888== by 0x6656D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24888== by 0x534DD38: PetscInitialize (pinit.c:924)
==24888== by 0x4B3C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==24888== by 0x4B3C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==24888== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==24888== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==24888== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==24888== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==24888== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==24888== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18)
==24888==
==24888== Open file descriptor 8: /dev/shm/open_mpi.0000
==24888== at 0x4F59A1C: __open_nocancel (open64_nocancel.c:39)
==24888== by 0x4EDDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==24888== by 0x4B76822: ???
==24888== by 0x4B7696F: ???
==24888== by 0x8DD36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24888== by 0x8DD3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24888== by 0x8D89922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24888== by 0x8D2E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==24888== by 0x66BD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24888== by 0x6656D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24888== by 0x534DD38: PetscInitialize (pinit.c:924)
==24888== by 0x4B3C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==24888== by 0x4B3C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==24888== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==24888== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==24888== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==24888== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==24888== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==24888== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18)
==24888==
==24888== Open file descriptor 113:
==24888== <inherited from parent>
==24888==
==24888== Open file descriptor 110:
==24888== <inherited from parent>
==24888==
==24888== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractAnalyticJacobian_valgrind.txt
==24888== <inherited from parent>
==24888==
==24888== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==24888== <inherited from parent>
==24888==
==24888==
==24888== HEAP SUMMARY:
==24888== in use at exit: 617,986 bytes in 8,239 blocks
==24888== total heap usage: 45,030 allocs, 36,791 frees, 1,338,163,004 bytes allocated
==24888==
==24888== LEAK SUMMARY:
==24888== definitely lost: 0 bytes in 0 blocks
==24888== indirectly lost: 0 bytes in 0 blocks
==24888== possibly lost: 0 bytes in 0 blocks
==24888== still reachable: 120 bytes in 3 blocks
==24888== suppressed: 617,866 bytes in 8,236 blocks
==24888== Reachable blocks (those to which a pointer was found) are not shown.
==24888== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==24888==
==24888== For lists of detected and suppressed errors, rerun with: -s
==24888== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)
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