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upload memtest results
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github-action committed Aug 27, 2024
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73 changes: 73 additions & 0 deletions log-files/2024-08-27_16-13-44/Test1D3DLinearEllipticSolver_valgrind.txt
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==24977== Memcheck, a memory error detector
==24977== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==24977== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==24977== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/Test1D3DLinearEllipticSolver -malloc_debug -malloc_dump -memory_info
==24977== Parent PID: 24027
==24977==
==24977==
==24977== FILE DESCRIPTORS: 9 open (3 std) at exit.
==24977== Open file descriptor 12:
==24977== at 0x84E707D: pipe (pipe.c:29)
==24977== by 0x104D507D: ???
==24977== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==24977== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24977== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24977== by 0x6AACD38: PetscInitialize (pinit.c:924)
==24977== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==24977== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==24977== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==24977== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==24977== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==24977== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==24977== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==24977== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18)
==24977==
==24977== Open file descriptor 8: /dev/shm/open_mpi.0000
==24977== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39)
==24977== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==24977== by 0x7D3B822: ???
==24977== by 0x7D3B96F: ???
==24977== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24977== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24977== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24977== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==24977== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24977== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24977== by 0x6AACD38: PetscInitialize (pinit.c:924)
==24977== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==24977== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==24977== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==24977== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==24977== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==24977== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==24977== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==24977== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18)
==24977==
==24977== Open file descriptor 113:
==24977== <inherited from parent>
==24977==
==24977== Open file descriptor 110:
==24977== <inherited from parent>
==24977==
==24977== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1D3DLinearEllipticSolver_valgrind.txt
==24977== <inherited from parent>
==24977==
==24977== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==24977== <inherited from parent>
==24977==
==24977==
==24977== HEAP SUMMARY:
==24977== in use at exit: 618,270 bytes in 8,238 blocks
==24977== total heap usage: 51,119 allocs, 42,881 frees, 1,339,259,120 bytes allocated
==24977==
==24977== LEAK SUMMARY:
==24977== definitely lost: 0 bytes in 0 blocks
==24977== indirectly lost: 0 bytes in 0 blocks
==24977== possibly lost: 0 bytes in 0 blocks
==24977== still reachable: 24 bytes in 2 blocks
==24977== suppressed: 618,246 bytes in 8,236 blocks
==24977== Reachable blocks (those to which a pointer was found) are not shown.
==24977== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==24977==
==24977== For lists of detected and suppressed errors, rerun with: -s
==24977== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)
73 changes: 73 additions & 0 deletions log-files/2024-08-27_16-13-44/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt
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==43290== Memcheck, a memory error detector
==43290== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==43290== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==43290== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/Test1dMonodomainShannonCvodeBenchmarks -malloc_debug -malloc_dump -memory_info
==43290== Parent PID: 24027
==43290==
==43290==
==43290== FILE DESCRIPTORS: 9 open (3 std) at exit.
==43290== Open file descriptor 12:
==43290== at 0xA7C307D: pipe (pipe.c:29)
==43290== by 0x1432407D: ???
==43290== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==43290== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43290== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43290== by 0xAB4CD38: PetscInitialize (pinit.c:924)
==43290== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43290== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43290== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==43290== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43290== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43290== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43290== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43290== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18)
==43290==
==43290== Open file descriptor 8: /dev/shm/open_mpi.0000
==43290== at 0xA7C7A1C: __open_nocancel (open64_nocancel.c:39)
==43290== by 0xA74BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==43290== by 0xA0E4822: ???
==43290== by 0xA0E496F: ???
==43290== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43290== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43290== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43290== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==43290== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43290== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43290== by 0xAB4CD38: PetscInitialize (pinit.c:924)
==43290== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43290== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43290== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==43290== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43290== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43290== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43290== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43290== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18)
==43290==
==43290== Open file descriptor 113:
==43290== <inherited from parent>
==43290==
==43290== Open file descriptor 110:
==43290== <inherited from parent>
==43290==
==43290== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt
==43290== <inherited from parent>
==43290==
==43290== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==43290== <inherited from parent>
==43290==
==43290==
==43290== HEAP SUMMARY:
==43290== in use at exit: 618,759 bytes in 8,244 blocks
==43290== total heap usage: 319,598 allocs, 311,354 frees, 1,398,098,131 bytes allocated
==43290==
==43290== LEAK SUMMARY:
==43290== definitely lost: 0 bytes in 0 blocks
==43290== indirectly lost: 0 bytes in 0 blocks
==43290== possibly lost: 0 bytes in 0 blocks
==43290== still reachable: 24 bytes in 2 blocks
==43290== suppressed: 618,735 bytes in 8,242 blocks
==43290== Reachable blocks (those to which a pointer was found) are not shown.
==43290== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==43290==
==43290== For lists of detected and suppressed errors, rerun with: -s
==43290== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 31)
73 changes: 73 additions & 0 deletions log-files/2024-08-27_16-13-44/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt
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==26213== Memcheck, a memory error detector
==26213== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==26213== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==26213== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info
==26213== Parent PID: 24027
==26213==
==26213==
==26213== FILE DESCRIPTORS: 9 open (3 std) at exit.
==26213== Open file descriptor 12:
==26213== at 0xF7F707D: pipe (pipe.c:29)
==26213== by 0x196AB07D: ???
==26213== by 0x14CB14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==26213== by 0x11497418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26213== by 0x11430D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26213== by 0x10125D38: PetscInitialize (pinit.c:924)
==26213== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26213== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26213== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26213== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26213== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26213== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26213== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26213== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==26213==
==26213== Open file descriptor 8: /dev/shm/open_mpi.0000
==26213== at 0xF7FBA1C: __open_nocancel (open64_nocancel.c:39)
==26213== by 0xF77FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==26213== by 0xF134822: ???
==26213== by 0xF13496F: ???
==26213== by 0x14D566DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26213== by 0x14D56938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26213== by 0x14D0C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26213== by 0x14CB12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==26213== by 0x11497418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26213== by 0x11430D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26213== by 0x10125D38: PetscInitialize (pinit.c:924)
==26213== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26213== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26213== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26213== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26213== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26213== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26213== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26213== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==26213==
==26213== Open file descriptor 113:
==26213== <inherited from parent>
==26213==
==26213== Open file descriptor 110:
==26213== <inherited from parent>
==26213==
==26213== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt
==26213== <inherited from parent>
==26213==
==26213== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==26213== <inherited from parent>
==26213==
==26213==
==26213== HEAP SUMMARY:
==26213== in use at exit: 618,366 bytes in 8,239 blocks
==26213== total heap usage: 1,124,534 allocs, 1,116,295 frees, 1,415,927,874 bytes allocated
==26213==
==26213== LEAK SUMMARY:
==26213== definitely lost: 0 bytes in 0 blocks
==26213== indirectly lost: 0 bytes in 0 blocks
==26213== possibly lost: 0 bytes in 0 blocks
==26213== still reachable: 56 bytes in 3 blocks
==26213== suppressed: 618,310 bytes in 8,236 blocks
==26213== Reachable blocks (those to which a pointer was found) are not shown.
==26213== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==26213==
==26213== For lists of detected and suppressed errors, rerun with: -s
==26213== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)
73 changes: 73 additions & 0 deletions log-files/2024-08-27_16-13-44/TestAbstractAnalyticJacobian_valgrind.txt
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==24896== Memcheck, a memory error detector
==24896== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==24896== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==24896== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractAnalyticJacobian -malloc_debug -malloc_dump -memory_info
==24896== Parent PID: 24027
==24896==
==24896==
==24896== FILE DESCRIPTORS: 9 open (3 std) at exit.
==24896== Open file descriptor 12:
==24896== at 0x4F1007D: pipe (pipe.c:29)
==24896== by 0xB1E607D: ???
==24896== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==24896== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24896== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24896== by 0x5308D38: PetscInitialize (pinit.c:924)
==24896== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==24896== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==24896== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==24896== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==24896== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==24896== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==24896== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==24896== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18)
==24896==
==24896== Open file descriptor 8: /dev/shm/open_mpi.0000
==24896== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39)
==24896== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==24896== by 0x4B76822: ???
==24896== by 0x4B7696F: ???
==24896== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24896== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24896== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==24896== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==24896== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24896== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==24896== by 0x5308D38: PetscInitialize (pinit.c:924)
==24896== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==24896== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==24896== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==24896== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==24896== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==24896== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==24896== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==24896== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18)
==24896==
==24896== Open file descriptor 113:
==24896== <inherited from parent>
==24896==
==24896== Open file descriptor 110:
==24896== <inherited from parent>
==24896==
==24896== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractAnalyticJacobian_valgrind.txt
==24896== <inherited from parent>
==24896==
==24896== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==24896== <inherited from parent>
==24896==
==24896==
==24896== HEAP SUMMARY:
==24896== in use at exit: 617,934 bytes in 8,238 blocks
==24896== total heap usage: 45,032 allocs, 36,794 frees, 1,338,169,785 bytes allocated
==24896==
==24896== LEAK SUMMARY:
==24896== definitely lost: 0 bytes in 0 blocks
==24896== indirectly lost: 0 bytes in 0 blocks
==24896== possibly lost: 0 bytes in 0 blocks
==24896== still reachable: 24 bytes in 2 blocks
==24896== suppressed: 617,910 bytes in 8,236 blocks
==24896== Reachable blocks (those to which a pointer was found) are not shown.
==24896== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==24896==
==24896== For lists of detected and suppressed errors, rerun with: -s
==24896== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)
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