Scripts for paper titled "Single-cell transcriptome profiling reveals immune and stromal cell heterogeneity in primary Sjogren's syndrome"

The processed data has been deposited in the Zenodo repository:

SG_annotated.h5ad: This file contains scRNA-seq data from the salivary gland of 11 patients with primary Sjogren's syndrome (pSS) and 5 control individuals.
SG_PBMC_immune_inte_seurat_rpca_pc20_neighbor50.h5ad: This file comprises data on all immune cells from both peripheral blood mononuclear cells (PBMCs) and the salivary gland of 16 patients and 8 control individuals.

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
README.md		README.md
SG_analysis.ipynb		SG_analysis.ipynb
SG_analysis_R.ipynb		SG_analysis_R.ipynb
SG_analysis_R.r		SG_analysis_R.r
cellchat_analysis.ipynb		cellchat_analysis.ipynb
clinical_analysis.ipynb		clinical_analysis.ipynb
endothelial_analysis.ipynb		endothelial_analysis.ipynb
epithelial_analysis.ipynb		epithelial_analysis.ipynb
fibroblast_analysis.ipynb		fibroblast_analysis.ipynb
immune_analysis_01.ipynb		immune_analysis_01.ipynb
immune_analysis_02.ipynb		immune_analysis_02.ipynb
immune_analysis_03.ipynb		immune_analysis_03.ipynb
supple_analysis.ipynb		supple_analysis.ipynb

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