QC Portal

The QC Portal app makes the quality_control metadata (see aind-data-schema) explorable and provides tools for manual annotation of metrics.

Portal

Subject view

Experiment view

[todo]

QC view

Launch

panel serve src/aind_qc_portal/qc_portal_app.py src/aind_qc_portal/qc_asset_app.py src/aind_qc_portal/qc_app.py --static-dirs images=src/aind_qc_portal/images --autoreload --show --port 5007 --allow-websocket-origin=10.128.141.92:5007 --keep-alive 10000

(port is set to differentiate from aind-metadata-viz app)

CI/CD

There is a Dockerfile which includes the entrypoint to launch the app.

Local dev

1. Build the Docker image locally and run a Docker container:

docker build -t aind-qc-portal .
docker run -e ALLOW_WEBSOCKET_ORIGIN=localhost:8000 -p 8000:8000 aind-qc-portal

2. Navigate to 'localhost:8000` to view the app.

AWS

1. On pushes to the dev or main branch, a GitHub Action will run to publish a Docker image to ghcr.io/allenneuraldynamics/aind-qc-portal:dev or ghcr.io/allenneuraldynamics/aind-qc-portal:latest.
2. The image can be used by a ECS Service in AWS to run a task container. Application Load Balancer can be used to serve the container from ECS. Please note that the task must be configured with the correct env variables (e.g. API_GATEWAY_HOST, ALLOW_WEBSOCKET_ORIGIN).