Analysis with limited sorts of 10X BCR output #254
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Hello. I am curious whether I can utilize the visualization tools having limited sorts of 10X BCR outputs. The output currently available is as followed: (1) BCR_filtered_contig_annotations.csv (2-1) barcodes.tsv.gz Hope I can get some insight about how to utilize the tool. |
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Replies: 1 comment
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Hi @jaesoonpark, sorry for the delayed response - didn't realised i don't get ping when a question is raised here . Anyway, yes! Dandelion has a You can read your single-cell object (number 2s) as per scanpy's tutorials, and then follow the rest of the tutorials for the various visualisations |
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Hi @jaesoonpark, sorry for the delayed response - didn't realised i don't get ping when a question is raised here .
Anyway, yes! Dandelion has a
ddl.read_10x_vdj
function that will just take your first file (BCR_filtered_contig_annotations.csv).You can read your single-cell object (number 2s) as per scanpy's tutorials, and then follow the rest of the tutorials for the various visualisations