Skip to content

Latest commit

 

History

History
54 lines (28 loc) · 853 Bytes

VisualisingGenomicsData.md

File metadata and controls

54 lines (28 loc) · 853 Bytes

VisualisingGenomicsData

author: MRC Clinical Sciences Centre date: http://mrccsc.github.io/training.html autosize: true

Intro slides

Topics Covered

  • Visualising high dimensional data
    • Heatmap
    • Principal Component Analysis
  • Meta signal of Genomic Intervals/Regions
    • Replicate peaks
    • Average Coverage
    • Motif occurence
  • Exporting data to IGV
    • Tracktables
    • Exporting DESeq2 results to IGV
  • Visualising features in Gviz
    • Introduction to Gviz.
    • Plotting coverage over regions.
    • Adding annotation.
    • Plotting reads
    • Plotting splice junctions.
Error in readChar(con, 5L, useBytes = TRUE) : cannot open the connection