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.travis.yml
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.travis.yml
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language: generic
# Only build for develop and master (and PRs)
branches:
only:
- master
- develop
os:
linux
env:
global:
- secure: "f8EMSWeYC38elhpB4B/ddxlklEvQoycaxnt90Xw2tH/+ThdP1qteQ2vdgNFy1KL7Am/xnbrRhavI5K+ayfxJ93NoE2adaJ9f9aljXK+Oeu+buv5MVo2E2HhN9mX9opSSxiqGmnHIVYcdLP+1soIsDD78SGL7hB/u5nQ1aTzkbaM="
- GH_DOC_BRANCH=develop
- GH_REPOSITORY=github.com/MDAnalysis/mdanalysis.git
- GIT_CI_USER=TravisCI
- GIT_CI_EMAIL=TravisCI@mdanalysis.org
- MDA_DOCDIR=${TRAVIS_BUILD_DIR}/package/doc/html/html
# Set default python version to avoid repetition later
- PYTHON_VERSION=3.6
- BUILD_DOCS=false
- COVERALLS=false
- PYTEST_FLAGS="--disable-pytest-warnings --numprocesses 2 --durations=50"
- PYTEST_LIST="testsuite/MDAnalysisTests"
- MAIN_CMD="pytest ${PYTEST_LIST}"
- SETUP_CMD="${PYTEST_FLAGS}"
- BUILD_CMD="pip install -v package/ && pip install testsuite/"
- CONDA_MIN_DEPENDENCIES="mmtf-python mock six biopython networkx cython joblib matplotlib scipy griddataformats hypothesis"
- CONDA_DEPENDENCIES="${CONDA_MIN_DEPENDENCIES} seaborn clustalw=2.1 netcdf4 scikit-learn coveralls"
- CONDA_CHANNELS='biobuilds conda-forge'
- CONDA_CHANNEL_PRIORITY=True
- NUMPY_VERSION=stable
- INSTALL_HOLE="true"
matrix:
# Run a coverage test
- COVERALLS="true" SETUP_CMD="${PYTEST_FLAGS} --cov=MDAnalysis"
- PYTHON_VERSION=3.5
- PYTHON_VERSION=3.4
- PYTHON_VERSION=2.7
- NUMPY_VERSION=1.10.4
- NUMPY_VERSION=dev EVENT_TYPE="cron"
matrix:
fast_finish: true
include:
- env: NAME="Doc"
MAIN_CMD="cd package && python setup.py"
SETUP_CMD="build_sphinx"
BUILD_DOCS=true
BUILD_CMD="cd ${TRAVIS_BUILD_DIR}/package && python setup.py build_ext --inplace"
INSTALL_HOLE="false"
# todo update to default 3.6 (aka removing the line with PYTHON_VERSION here)
- env: NAME="Lint"
PYTHON_VERSION=2.7
MAIN_CMD="pylint --rcfile=package/.pylintrc package/MDAnalysis && pylint --rcfile=package/.pylintrc testsuite/MDAnalysisTests"
SETUP_CMD=""
BUILD_CMD=""
CONDA_DEPENDENCIES=""
INSTALL_HOLE="false"
- os: osx
env: PYTHON_VERSION=3.6
- os: osx
env: PYTHON_VERSION=2.7
- env: NAME='minimal'
CONDA_DEPENDENCIES=${CONDA_MIN_DEPENDENCIES}
INSTALL_HOLE="false"
install:
# download hole first to use system curl
# additional external tools (Issue #898) -- HOLE
- |
if [[ $INSTALL_HOLE == 'true' ]]; then \
bash ./maintainer/install_hole.sh $TRAVIS_OS_NAME "${HOME}"; \
HOLE_BINDIR="${HOME}/hole2/exe"; \
export PATH=${PATH}:${HOLE_BINDIR}; \
fi
- git clone git://github.com/astropy/ci-helpers.git
- source ci-helpers/travis/setup_conda.sh
- eval $BUILD_CMD
script:
- cd ${TRAVIS_BUILD_DIR}
- if [[ $TRAVIS_OS_NAME == 'osx' ]]; then ulimit -S -n 2048; fi
- echo $MAIN_CMD $SETUP_CMD
- eval $MAIN_CMD $SETUP_CMD
after_success:
- |
if [[ $COVERALLS == 'true' ]]; then \
coveralls; \
fi
# can't use test here since this leads to travis fails even though the build passes
- if [[ ${TRAVIS_PULL_REQUEST} == "false" ]] && [[ ${BUILD_DOCS} == "true" ]] && [[ ${TRAVIS_BRANCH} == ${GH_DOC_BRANCH} ]]; then
bash ${TRAVIS_BUILD_DIR}/maintainer/deploy_docs.sh;
fi