From e4431485b48b54fb39c81b89c2c309990a1316d1 Mon Sep 17 00:00:00 2001
From: Sebastien Carrere <sebastien.carrere@inrae.fr>
Date: Thu, 18 Aug 2022 12:42:06 +0200
Subject: [PATCH] erroneous path

---
 4.3/.gitkeep                   |  0
 4.3/Singularity                | 75 ----------------------------------
 4.3/ubuntu.packages.build.list | 12 ------
 4.3/ubuntu.packages.run.list   |  2 -
 singularity/.gitkeep           |  0
 5 files changed, 89 deletions(-)
 delete mode 100644 4.3/.gitkeep
 delete mode 100644 4.3/Singularity
 delete mode 100644 4.3/ubuntu.packages.build.list
 delete mode 100644 4.3/ubuntu.packages.run.list
 delete mode 100644 singularity/.gitkeep

diff --git a/4.3/.gitkeep b/4.3/.gitkeep
deleted file mode 100644
index e69de29b..00000000
diff --git a/4.3/Singularity b/4.3/Singularity
deleted file mode 100644
index 35ab3409..00000000
--- a/4.3/Singularity
+++ /dev/null
@@ -1,75 +0,0 @@
-Bootstrap: docker
-From: ubuntu:trusty
-IncludeCmd: yes
-
-%files
-ubuntu.packages.build.list /opt/packages.build.list
-ubuntu.packages.run.list /opt/packages.run.list
-
-%post
-apt update 
-apt-get update
-DEBIAN_FRONTEND=noninteractive apt-get install -y software-properties-common 
-add-apt-repository ppa:ubuntu-toolchain-r/test
-apt-get update
-DEBIAN_FRONTEND=noninteractive apt-get install -y $(cat /opt/packages.build.list) $(cat /opt/packages.run.list) 
-update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-5 20
-update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-5 20
-update-alternatives --config gcc
-update-alternatives --config g++
-cd /opt/
-wget http://eugene.toulouse.inrae.fr/Downloads/eugene-4.3.tar.gz
-tar xfz eugene-4.3.tar.gz
-cd eugene-4.3
-export EUGENE_DIR=/opt/EUGENE
-./reconf && CXXFLAGS=-O3 CFLAGS=-O3 ./configure --prefix=$EUGENE_DIR && make && make install && make clean && make distclean
-
-mkdir -p /opt/EUGENE/share/eugene/models/WAM
-cd /opt/EUGENE/share/eugene/models/WAM
-export WAM=WAM_plant.20180615.tar.gz && wget http://eugene.toulouse.inra.fr/Downloads/$WAM && tar xfz $WAM && rm -rf $WAM
-export WAM=WAM_fungi_20180126.tar.gz && wget http://eugene.toulouse.inra.fr/Downloads/$WAM && tar xfz $WAM && rm -rf $WAM
-export WAM=WAM_nematodes_20171017.tar.gz && wget http://eugene.toulouse.inra.fr/Downloads/$WAM && tar xfz $WAM && rm -rf $WAM
-export WAM=WAM_oomycetes_20180126.tar.gz && wget http://eugene.toulouse.inra.fr/Downloads/$WAM && tar xfz $WAM && rm -rf $WAM
-chmod -R a+r /opt/EUGENE/share/eugene/models/WAM
-
-rm -rf /opt/eugene-4.3*
-apt-get remove -y $(cat /opt/packages.build.list) && apt-get autoremove -y
-apt-get clean
-apt-get purge
-
-%environment
-export LC_ALL=C
-export PATH=/opt/EUGENE/bin:$PATH
-export EUGENE_DIR=/opt/EUGENE
-export EUGENEDIR=/opt/EUGENE/share/eugene/
-
-%runscript
-"$@"
-
-%test
-echo "[test] None"
-
-%labels
-Maintainer Sebastien.Carrere@inrae.fr
-Version 4.3
-    
-%help
-## EUGENE
-
-EuGene: integrative gene finder for eukaryotic and prokaryotic genomes
-
-### USAGE
-    
-    $ {IMAGE} egn_TrainIMM
-    $ {IMAGE} eugene
-    
-### MODELS INCLUDED
-
- - WAM_plant.20180615
- - WAM_fungi_20180126
- - WAM_nematodes_20171017
- - WAM_oomycetes_20180126
-
-### CITATION
-
-Sallet E., Gouzy J., Schiex T. (2019) EuGene: An Automated Integrative Gene Finder for Eukaryotes and Prokaryotes. Methods in Molecular Biology
diff --git a/4.3/ubuntu.packages.build.list b/4.3/ubuntu.packages.build.list
deleted file mode 100644
index eb5521f3..00000000
--- a/4.3/ubuntu.packages.build.list
+++ /dev/null
@@ -1,12 +0,0 @@
-build-essential
-g++-5
-gcc-5
-wget
-autotools-dev
-automake
-libgd-dev
-tclsh
-texlive-latex-base
-texlive-fonts-extra
-texlive-latex-extra
-texlive-fonts-recommended
diff --git a/4.3/ubuntu.packages.run.list b/4.3/ubuntu.packages.run.list
deleted file mode 100644
index b4a1c529..00000000
--- a/4.3/ubuntu.packages.run.list
+++ /dev/null
@@ -1,2 +0,0 @@
-procps
-libgd3
diff --git a/singularity/.gitkeep b/singularity/.gitkeep
deleted file mode 100644
index e69de29b..00000000