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Runs of Homozygosity #64

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muffato opened this issue Dec 11, 2023 · 1 comment
Open

Runs of Homozygosity #64

muffato opened this issue Dec 11, 2023 · 1 comment
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feature Requests for new features question Further information is requested user request Requests made by users and public

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@muffato
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muffato commented Dec 11, 2023

Description of feature

Plink can do that.

This would be very valuable, though I think the challenge here is that this would often be species specific, e.g. you need to define the number of SNPs and the minimum length. However I think the defaults might be a reasonable starting point.
@muffato muffato added the enhancement Improvement of the existing features label Dec 11, 2023
@muffato muffato added feature Requests for new features and removed enhancement Improvement of the existing features labels Jun 1, 2024
@muffato muffato added user request Requests made by users and public question Further information is requested labels Jun 10, 2024
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muffato commented Jun 27, 2024

It seems possible with bcftools as well: https://samtools.github.io/bcftools/howtos/roh-calling.html

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feature Requests for new features question Further information is requested user request Requests made by users and public
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