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spatialdata-notebooks
Publicanndata
PublicAnnotated data.pertpy
PublicPerturbation Analysis in the scverse ecosystem.- Single-cell analysis in Python. Scales to >1M cells.
- Example repository generated from https://github.com/scverse/cookiecutter-scverse. This repo is updated automatically to match the latest version of the template.
cookiecutter-scverse
Public- muon is a multimodal omics Python framework
scvi-tools
PublicDeep probabilistic analysis of single-cell and spatial omics dataspatialdata-io
Publicscanpy-tutorials
Publicsquidpy
PublicSpatial Single Cell Analysis in Pythonrapids_singlecell
PublicRapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.spatialdata
Publicscirpy
Publicecosystem-packages
PublicRegistry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)scverse.github.io
Publicprelude-runner
Publicscverse-tutorials
Publicscvi-tutorials
Publicpytometry
Publicnapari-spatialdata
PublicInteractive visualization of spatial omics dataplotting_api
Publicgenomic-features
Publicintegration-testing
Publicmudata
PublicMultimodal Data (.h5mu) implementation for Pythonsimple-scvi
PublicMuon.jl
Public