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    • Calvin Cornell scripts for assessing genome-encoded metabolic potential of ammonia-oxidizing archaea
      Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Jul 15, 2024Jul 15, 2024
    • AXIOME2

      Public
      Automation, eXtension, and Integration of Microbial Ecology
      Python
      Other
      4041Updated Feb 22, 2024Feb 22, 2024
    • AXIOME3 Full Stack Project
      Python
      BSD 3-Clause "New" or "Revised" License
      13713Updated Aug 22, 2023Aug 22, 2023
    • AXIOME3

      Public
      Automated QIIME 2 Workflow wrapped in Luigi Framework currently in early development
      Python
      BSD 3-Clause "New" or "Revised" License
      2810Updated Apr 17, 2022Apr 17, 2022
    • pandaseq

      Public
      PAired-eND Assembler for DNA sequences
      C
      GNU General Public License v3.0
      2412940Updated Dec 21, 2020Dec 21, 2020
    • Server training for the Neufeld lab
      BSD 3-Clause "New" or "Revised" License
      0000Updated Sep 22, 2020Sep 22, 2020
    • SSUnique

      Public
      SSUnique is a software tool designed to process unclassified and/ or rare fractions of SSU rRNA gene sequence libraries. Specifically, SSUnique generates a network- based visualization of taxonomic assignments then extracts unclassified and/or rare sequence groups, filtering these groups for phylogenetic novelty.
      R
      1600Updated Nov 19, 2016Nov 19, 2016
    • PAired-eND Assembler for DNA sequences – SAM/BAM format support
      C
      GNU General Public License v3.0
      1200Updated Jul 25, 2016Jul 25, 2016
    • MESaS

      Public
      Microbial Ecology Scripts and Stuff
      R
      MIT License
      1100Updated May 22, 2015May 22, 2015
    • AXIOME

      Public
      AXIOME - Automation, Extension, and Integration Of Microbial Ecology: Helper tools to make managing numerical ecology pipelines easier
      Vala
      GNU General Public License v3.0
      31340Updated Jun 20, 2014Jun 20, 2014
    • axiometic

      Public
      A GUI companion for AXIOME
      Python
      0300Updated Nov 13, 2012Nov 13, 2012
    • Pages repository for Neufeld lab
      JavaScript
      0100Updated Jul 20, 2012Jul 20, 2012