Repositories list

• MINOTAUR

  Public
  Multivariate vIsualisatioN and OuTlier Analysis Using R

  R

  •6•13•10•1•Updated Apr 8, 2023Apr 8, 2023

• community-and-code

  Public
  Supplementary data for "Community and Code: Nine Lessons from Nine NESCent Hackathons"

  CSS

  •0•2•3•0•Updated Sep 9, 2022Sep 9, 2022

• plhdb

  Public
  Primate Life Histories Database Codebase

  JavaScript

  •

  GNU General Public License v3.0

  •0•5•8•0•Updated Mar 2, 2021Mar 2, 2021

• popgenInfo

  Public
  Vignettes for Population Genetics in R

  CSS

  •

  MIT License

  •50•21•44•4•Updated Aug 11, 2020Aug 11, 2020

• dplace

  Public
  D-PLACE: Database of Phylogenies of Languages for the study of Cultural Evolution

  JavaScript

  •

  MIT License

  •10•6•0•3•Updated Jun 5, 2020Jun 5, 2020

• popgen-docker

  Public
  Dockerfile(s) for population genetics

  dockerrpopulation-genetics

  Dockerfile

  •

  MIT License

  •2•6•4•0•Updated May 10, 2019May 10, 2019

• TraitDB

  Public
  Trait Database using Rails 4

  Ruby

  •

  MIT License

  •2•4•29•0•Updated Apr 30, 2019Apr 30, 2019

• FossilCalibrations

  Public
  Fossil calibrations database

  PHP

  •

  BSD 2-Clause "Simplified" License

  •4•14•17•0•Updated Sep 18, 2018Sep 18, 2018

• RMesquite

  Public
  An package for interoperability between Mesquite (http://mesquiteproject.org) and R

  Java

  •

  GNU General Public License v2.0

  •0•0•1•0•Updated Jun 8, 2018Jun 8, 2018

• feedexp.org

  Public
  Static tombstone page with data archive links and information about the Feeding Experiments End-user Database (FEED)

  JavaScript

  •0•0•0•0•Updated May 7, 2018May 7, 2018

• feedingdb

  Public
  Feeding Experiments End-user Database (FEED)

  Web Ontology Language

  •

  GNU General Public License v3.0

  •1•3•3•0•Updated May 1, 2018May 1, 2018

• hip_hack_howto

  Public
  Hackathon guidance from NESCent's Hackathons, Interoperability, Phylogenies working group.

  TeX

  •1•1•9•0•Updated Apr 14, 2017Apr 14, 2017

• 1000-datasets

  Public
  Tracking reuse of 1,000 publicly available scientific datasets across 10 repositories. Work in progress!

  TeX

  •3•5•7•1•Updated Nov 17, 2016Nov 17, 2016

• phylr

  Public
  An initial implementation of the search functionality described in the PhyloWS standard for accessing phylogenetic information. A 2009 Google Summer of Code project.

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 9, 2016Mar 9, 2016

• nescent.github.io

  Public
  Public site for NESCent digital asset archival

  CSS

  •

  Other

  •0•0•1•0•Updated Jan 11, 2016Jan 11, 2016

• ontologies-in-evobio-course-2012

  Public
  Ontologies for Evolutionary Biology course held in 2012

  Web Ontology Language

  •0•0•0•0•Updated Aug 19, 2015Aug 19, 2015

• ontologies-in-evobio-course-2013

  Public
  Ontologies for Evolutionary Biology course held in 2013

  Web Ontology Language

  •0•0•0•0•Updated Aug 19, 2015Aug 19, 2015

• feed-ontology-closure

  Public
  Tool for asserting transitive closure axioms, used by the FEED project.

  Scala

  •

  MIT License

  •0•0•0•0•Updated Aug 18, 2015Aug 18, 2015

• r-popgen-hackathon

  Public
  Population Genetics Hackathon, to be held at NESCent on March 16-20, 2015

  2•18•18•0•Updated Jul 13, 2015Jul 13, 2015

• Tools-for-Evo-Hack

  Public
  GMOD Tools for Evolutionary Biology Hackathon

  0•1•0•0•Updated Jul 7, 2015Jul 7, 2015

• ParkNotebooks

  Public
  Scripts for digitization and curation of the Park Notebooks

  Python

  •

  GNU General Public License v3.0

  •0•2•2•0•Updated Jul 7, 2015Jul 7, 2015

• fcdb-api

  Public
  JSON/REST API for FossilCalibrations

  JavaScript

  •

  MIT License

  •1•0•5•0•Updated Jul 1, 2015Jul 1, 2015

• max-bodysize-evol

  Public
  The codebase for the Maximum Bodysize Evolution Database developed by the Working Group "Phanerozoic body size trends in time and space: macroevolution and macroecology"

  Ruby

  •

  MIT License

  •1•0•1•0•Updated Jun 26, 2015Jun 26, 2015

• heliconius-db

  Public
  Database schema and web-application for natural diversity of phenotypes and genotypes collected for the neotropical Heliconius butterflies

  Java

  •0•0•0•0•Updated Jun 26, 2015Jun 26, 2015

• phylosoc2007jestill

  Public
  Command Line Interface to a Topological Query Application for BioSQL - A 2007 Google Summer of Code project

  Perl

  •0•0•0•0•Updated Mar 29, 2015Mar 29, 2015

• dbhack1

  Public
  Automatically exported from code.google.com/p/dbhack1

  Java

  •0•0•0•0•Updated Mar 15, 2015Mar 15, 2015

• diversification

  Public
  Design and implementation of methods to estimate speciation and extinction rates that may depend on a character state.

  Python

  •0•0•0•0•Updated Feb 9, 2015Feb 9, 2015

• evogen

  Public
  Phylogenetic tree rendering as a web-service. Demonstration project for the EvoGenomics WG at NESCent.

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 26, 2015Jan 26, 2015

• pmdb

  Public
  Code for the Plant Mating Systems Evolution Database

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 25, 2015Jan 25, 2015

• phylocommons

  Public
  A Django web app over an RDF phylogeny database supporting tree annotation and querying.

  JavaScript

  •

  MIT License

  •1•5•6•0•Updated Dec 30, 2014Dec 30, 2014