[Freesurfer] error: MatrixMultiply: m1 is null!

[lundq163]

What happened?

When processing data for the paper, I ran into this error a few times (only appeared in subject/sessions that used infantfs as the recon method). I cant pinpoint the exact cause of the issue within the data, but based on this convo it seems to be randomly occurring in instances with parallel recons. When reprocessing the same data with only 1 cpu and more time, this issue didnt occur.

What command did you use?

singularity run --cleanenv \
-B ${data_dir}/bids_dir/sub-107842_ses-19mo:/bids_dir \
-B ${data_dir}/processed/nibabies/sub-107842_ses-19mo:/output_dir \
-B ${data_dir}/work_dir/nibabies/sub-107842_ses-19mo:/wd \
-B ${data_dir}/processed/bibsnet/sub-107842_ses-19mo:/derivatives \
-B ${run_dir}/license.txt:/license.txt \
/home/faird/shared/code/external/pipelines/nibabies/nibabies_24.0.0.sif \
/bids_dir /output_dir participant \
--output-spaces MNI152NLin6Asym:res-2 \
--fs-license-file /license.txt \
--omp-nthreads 8 \
--nprocs 8 \
--cifti-output 91k \
-vv \
--project-goodvoxels \
--fd-radius 45 \
--derivatives /derivatives \
--surface-recon-method infantfs \
--age-months 19 \
-w /wd

What version of NiBabies are you using?

24.0.0

Relevant log output

Loading ribbon segmentation from /output_dir/sourcedata/freesurfer/sub-107842_ses-19mo/work/sub-107842_ses-19mo/mri/ribbon.mgz

	Loading aseg from /output_dir/sourcedata/freesurfer/sub-107842_ses-19mo/work/sub-107842_ses-19mo/mri/aseg.mgz
	ASeg Vox2RAS: -----------
	-1.00000   0.00000   0.00000   128.00000;
	 0.00000   0.00000   1.00000  -128.00000;
	 0.00000  -1.00000   0.00000   128.00000;
	 0.00000   0.00000   0.00000   1.00000;
	-------------------------

	Labeling Slice (256)
	  0  96 128 192 160 224  32  64 error: MatrixMultiply: m1 is null!
	�
	error: MatrixMultiply: m1 is null!
	�
Stderr:

Traceback:
	RuntimeError: subprocess exited with code 252.

Add any additional information or context about the problem here.

Let me know if there is any additional information you may need from me, or if you would like me to test any changes if they are made. Thanks!