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Failed to generate the boilerplate #3305

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LueHa opened this issue Jun 14, 2024 · 1 comment
Open

Failed to generate the boilerplate #3305

LueHa opened this issue Jun 14, 2024 · 1 comment
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@LueHa
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LueHa commented Jun 14, 2024

What happened?

In the HTML output file, the methods say: Failed to generate the boilerplate

What command did you use?

RUNNING: docker run --rm -e DOCKER_VERSION_8395080871=26.1.1 -it \
    -v /Users/XY/BIDS_tutorial/derivatives/license.txt:/opt/freesurfer/license.txt:ro \
    -v /Users/hannah 1/Documents/XY:/data:ro \
    -v /Users/XY/Documents/XYZ:/out nipreps/fmriprep:23.2.3 \
    /data /out participant \
    --skip_bids_validation \
    --participant-label 30171

What version of fMRIPrep are you running?

23.2.3

How are you running fMRIPrep?

Docker

Is your data BIDS valid?

Yes

Are you reusing any previously computed results?

No

Please copy and paste any relevant log output.

Methods
Failed to generate the boilerplate

Errors
No errors to report!

Additional information / screenshots

The online BIDS validator only indicates that I have a valid BIDS format if I click on "ignore NIFTI Headers". Otherwise it says:
Error 1: [Code 12] REPETITION_TIME_MISMATCH
Reason:
Repetition time defined in the JSON (2.000 sec.) did not match the one defined in the NIFTI header (0.000 sec.)

@LueHa LueHa added the bug label Jun 14, 2024
@tsalo
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tsalo commented Jun 14, 2024

Can you share the full logs?

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