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Cannot create symbolic links on drives shared with Windows #7

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mwhall opened this issue Oct 17, 2014 · 1 comment
Open

Cannot create symbolic links on drives shared with Windows #7

mwhall opened this issue Oct 17, 2014 · 1 comment
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mwhall commented Oct 17, 2014

Ran into an interesting scenario today: Running AXIOME in a VirtualBox where the working directory was the shared folder between Ubuntu and the host OS (Windows). The UPARSE rep_set step requires a symbolic link be made from the UPARSE output in the cluster folder to the rep_set folder. This cannot be done when Windows is the host OS. We need to somehow check if a link is possible, and brute-force copy the file over if not.
@mwhall mwhall added the bug label Oct 17, 2014
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mwhall commented Oct 17, 2014

Workaround: Use a folder that isn't shared between two OSes.

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