process.config

process {

    errorStrategy = 'terminate'

    withName: prokka {
        container = 'metashot/prokka:1.14.5-3'
        cpus = check_max(6, params.max_cpus)
        memory = { check_max(8.GB * (2**(task.attempt-1)), params.max_memory) }
        time = params.max_time
        errorStrategy = 'retry'
        maxRetries = 3
    }

    withName: eggnog_db_download {
        container = 'metashot/eggnog-mapper:2.1.4-2'   
        cpus = check_max(2, params.max_cpus)
        memory = check_max(4.GB, params.max_memory)
        time = params.max_time
    }

    withName: 'merge_anvio|merge_eggnog_mapper|merge_kofamscan' {
        container = 'metashot/utils:1.1.0-2'   
        cpus = check_max(2, params.max_cpus)
        memory = { check_max(8.GB * (2**(task.attempt-1)), params.max_memory) }
        time = params.max_time
        errorStrategy = 'retry'
        maxRetries = 3
    }

    withName: eggnog_mapper {
        container = 'metashot/eggnog-mapper:2.1.4-2'
        cpus = check_max(6, params.max_cpus)
        
        if( params.eggnog_db_mem ) {
            memory = check_max(48.GB, params.max_memory)
        }
        else {
            memory = { check_max(8.GB * (2**(task.attempt-1)), params.max_memory) }
            errorStrategy = 'retry'
            maxRetries = 3
        }

        time = params.max_time
    }

    withName: kofamscan_db_download {
        container = 'metashot/utils:1.1.0-2'   
        cpus = check_max(2, params.max_cpus)
        memory = check_max(4.GB, params.max_memory)
        time = params.max_time
    }

    withName: kofamscan {
        container = 'metashot/kofamscan:1.3.0-1'
        cpus = { check_max(6, params.max_cpus) }
        memory = { check_max(4.GB * (2**(task.attempt-1)), params.max_memory) }
        time = params.max_time
        errorStrategy = 'retry'
        maxRetries = 3
    }

    withName: anvio_kofam_db_download {
        container = 'metashot/anvio:7-2'   
        cpus = check_max(2, params.max_cpus)
        memory = check_max(4.GB, params.max_memory)
        time = params.max_time
    }

    withName: anvio_kofam {
        container = 'metashot/anvio:7-2'
        cpus = { check_max(6, params.max_cpus) }
        memory = { check_max(4.GB * (2**(task.attempt-1)), params.max_memory) }
        time = params.max_time
        errorStrategy = 'retry'
        maxRetries = 3
    }
    
}