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.gitignore
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.gitignore
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# Ignore all config files, except for the template and the baby genome config.
config/*.yaml
!config/baby.config.yaml
!config/template.config.yaml
# Ignore temp and system files created by python during package installation.
.idea
.DS_Store
__pycache__
*.pyc
*.html
venv*
*.egg-info
*.swp
# Ignore local builds of Sphinx HTML documentation
doc/_build
# Ignore contents of resources directory, except for baby genome files. Note,
# this ignores the uncompressed STAR index, but not the tar.gz one.
resources/*
!resources/baby_genome.mm10
resources/baby_genome.mm10/*
!resources/baby_genome.mm10/baby_genome.mm10.oneline_seqs.fa
!resources/baby_genome.mm10/baby_genome.mm10.annotation.txt
!resources/baby_genome.mm10/baby_genome.mm10.annotation.gtf
!resources/baby_genome.mm10/baby_genome.mm10.chr_ploidy.txt
# Ignore any results generated in the test_data/ directory as part of validating
# the CAMPAREE installation, but keep track of the gzipped fastq files for the
# baby genome.
test_data/results/*
!test_data/fastq_files/*.fq.gz
# Ignore document build files
doc/_build/*