This repository hosts tutorials for using MONAI on UF HiperGator.
Log in to HiperGator, change hju to your HiperGator username
ssh hju@hpg.rc.ufl.edu
Go to your home directory
cd ~
Download this repository into a local directory. The default name of the directory is monai_uf_tutorials.
git clone https://github.com/hw-ju/monai_uf_tutorials.git
Make all files in the directory executable
chmod -R +x monai_uf_tutorials/
- use MONAI Core for single-GPU training
- use MONAI Core for multi-GPU training
- use MONAI Core for Swin UNETR training & evaluation for BRATS21
- use MONAI Core for Swin UNETR self-supervised pretraining for BTCV
- use MONAI Core for Swin UNETR training & evaluation for BTCV
- use MONAI Core for dynunet(nnUnet) training
- use Datasets accelerated by caching in MONAI Core
- performance profiling of MONAI Core training by NVIDIA Nsight Systems
- Use Clara Parabricks on HiperGator
- Run GPU-Accelerated Single-Cell Genomics Analysis with RAPIDS on HiperGator