Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Jbrowse bug #16

Open
Slugger70 opened this issue Jun 6, 2017 · 2 comments
Open

Jbrowse bug #16

Slugger70 opened this issue Jun 6, 2017 · 2 comments
Labels
bug

Comments

@Slugger70
Copy link
Contributor

There is a bug in the Jbrowse code.

Line 658 of jbrowse.py located in /mnt/galaxy/shed_tools/toolshed.../repos/iuc/jbrowse/.../jbrowse/: The double quotes ("") need to be removed from around the curly braces in the find command..

This is a bug when find is run on ubuntu 16.04 for some reason.. It still works on ubuntu 14.04 but I don't know why.

Eric Rasche - the author of the tool is removing the use of find in future tool releases but won;t fix this one in a hurry.
@Slugger70 Slugger70 added the bug label Jun 6, 2017
@Slugger70
Copy link
Contributor Author

The work around for now is a manual fix on the build fs and a note in the ansible or an ansible directive to do it!

Slugger70 added a commit that referenced this issue Jun 6, 2017
@Slugger70
Added temporary fix for Jbrowse Issue #16
930dd16
@Slugger70
Copy link
Contributor Author

Seems to be fixed in latest build. Will leave open for another round of build tests

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
bug
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@Slugger70