diff --git a/infra/generate_cfgs.py b/infra/generate_cfgs.py
index 64d04450..a7cfc316 100755
--- a/infra/generate_cfgs.py
+++ b/infra/generate_cfgs.py
@@ -21,12 +21,12 @@ def make_cfgs(bench, data_dir):
       opt = "opt"
 
     # https://llvm.org/docs/Passes.html#dot-cfg-print-cfg-of-function-to-dot-file
-    cmd = f"{opt} -disable-output -passes=dot-cfg {bench}-{mode}.ll"
+    cmd = f"{opt} -disable-output -passes=dot-cfg {bench}-{mode}-{mode}.ll"
     os.system(cmd)
 
     # Delete the -init.ll file (We don't need it for nightly,
     # so just reduce the amount of clutter we copy to the nightly machine)
-    os.system(f"rm {bench}-{mode}-init.ll")
+    os.system(f"rm {bench}-{mode}-{mode}-init.ll")
 
     # Find all the dot files (can't use glob because it doesn't match hidden files)
     # There are also a bunch of files that start with ._Z that I don't think we care about?
diff --git a/infra/profile.py b/infra/profile.py
index 889f2030..0fafa467 100755
--- a/infra/profile.py
+++ b/infra/profile.py
@@ -80,7 +80,7 @@ def setup_benchmark(name):
 def optimize(benchmark):
   print(f'[{benchmark.index}/{benchmark.total}] Optimizing {benchmark.name} with {benchmark.treatment}')
   profile_dir = benchmark_profile_dir(benchmark.name)
-  optimized_bril_file = f'{profile_dir}/{benchmark.treatment}-optimized.bril'
+  optimized_bril_file = f'{profile_dir}/{benchmark.name}-{benchmark.treatment}.bril'
 
   # get the commands we need to run
   (eggcc_run_mode, llvm_args) = get_eggcc_options(benchmark)
@@ -89,7 +89,7 @@ def optimize(benchmark):
   cmd1 = f'{EGGCC_BINARY} {benchmark.path} --run-mode {eggcc_run_mode}'
   cmd2 = f'{EGGCC_BINARY} {optimized_bril_file} --add-timing {llvm_args} -o {profile_dir}/{benchmark.treatment} --llvm-output-dir {llvm_out_dir}'
 
-  print(f'Running: {cmd1}', flush=True)
+  print(f'Running c1: {cmd1}', flush=True)
   start_eggcc = time.time()
   process = subprocess.run(cmd1, shell=True, capture_output=True, text=True)
   process.check_returncode()
@@ -99,7 +99,7 @@ def optimize(benchmark):
   with open(optimized_bril_file, 'w') as f:
     f.write(process.stdout)
 
-  print(f'Running: {cmd2}', flush=True)
+  print(f'Running c2: {cmd2}', flush=True)
   start_llvm = time.time()
   process2 = subprocess.run(cmd2, shell=True)
   process2.check_returncode()