New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Script for easy download of datasets and splits #462

Open

blazejba opened this issue Sep 8, 2023 · 0 comments

Labels

feature

Collaborator

blazejba commented Sep 8, 2023

Problem:
Currently links to download the mixes and splits are hidden in the configuration files, e.g.:

graphium/expts/neurips2023_configs/base_config/large.yaml

Line 71 in 41a1172

    
           # wget https://storage.googleapis.com/graphium-public/datasets/neurips_2023/Large-dataset/LINCS_L1000_VCAP_0-4.csv.gz

tdcommons.ai introduces more datasets for single prediction tasks, useful for the evaluation of pre-trained models:
https://tdcommons.ai/single_pred_tasks/

Solution:
Write a script that allows downloading selected or all datasets and splits easily.

Include:

ToyMix,
LargeMix,
UltraLargeMix,
TDC/single_prediction_tasks.

blazejba added the feature label

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment