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Huffman coding #1

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tsybulkin opened this issue Apr 27, 2015 · 0 comments
Open

Huffman coding #1

tsybulkin opened this issue Apr 27, 2015 · 0 comments

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@tsybulkin
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Add Huffman coding capability to compress the traffic between master and workers. One package sent to a worker consisted of 1000 query sequences may look like:
Header:

  • fastq file name
  • pointer
  • qseq quantity in the package
    Body:
  • bit string where all sequences go one by one encoded by Huffman coding
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