diff --git a/CNAME b/CNAME deleted file mode 100644 index d9cc3df..0000000 --- a/CNAME +++ /dev/null @@ -1 +0,0 @@ -docs.cellcanvas.org \ No newline at end of file diff --git a/search/search_index.json b/search/search_index.json index ac18cee..c686212 100644 --- a/search/search_index.json +++ b/search/search_index.json @@ -1 +1 @@ -{"config":{"lang":["en"],"separator":"[\\s\\-]+","pipeline":["stopWordFilter"]},"docs":[{"location":"","title":"CellCanvas","text":"
CellCanvas is a tool for building geometric models of cellular architecture from images.
CellCanvas combines machine learning with interactive visualization to facilitate the creation of geometric representations of cellular architectures.
"},{"location":"#what-can-cellcanvas-do","title":"What can CellCanvas do?","text":"CellCanvas currently supports:
Install album
Setup the CellCanvas album catalog:
album add-catalog https://github.com/cellcanvas/album-catalog\n
Step 1: Follow the quick start
Step 2: Install the server on the worker: album install cellcanvas:server:0.0.4
Step 3: Make a tunnel to the worker:
ssh -L 8080:worker-host:8000 user.name@login-host -N -f\nssh -L 2222:login-host:22 user.name@login-host -N -f\n
Step 4: Launch the server on the worker: album run cellcanvas:server:0.0.4
Step 5: Install the config file fetecher on your local machine: album install cellcanvas:fetch-config:0.0.1 --filepath <my_path>
Step 6: Run the config file fetcher: album run cellcanvas:fetch-config:0.0.1 --localhost localhost --port 8080 --overlay_remote True --static_remote True --filepath ~/Data/copick/cellcanvas_server/local_sshOverlay_sshStatic.json
Step 7: Install the client on your local machine: album install cellcanvas:napari-cellcanvas:0.0.1
Step 8: Launch the client on your local machine: album run cellcanvas:napari-cellcanvas:0.0.1 --copick_config_path <my path>
CellCanvas is a tool for building geometric models of cellular architecture from images.
CellCanvas combines machine learning with interactive visualization to facilitate the creation of geometric representations of cellular architectures.
"},{"location":"#what-can-cellcanvas-do","title":"What can CellCanvas do?","text":"CellCanvas currently supports:
Install album
Setup the CellCanvas album catalog:
album add-catalog https://github.com/cellcanvas/album-catalog\n
Step 1: Follow the quick start
Step 2: Install the server on the worker: album install cellcanvas:server:0.0.4
Step 3: Make a tunnel to the worker:
ssh -L 8080:worker-host:8000 user.name@login-host -N -f\nssh -L 2222:login-host:22 user.name@login-host -N -f\n
Step 4: Launch the server on the worker:
album run cellcanvas:server:0.0.4\n
Step 5: Install the config file fetecher on your local machine:
album install cellcanvas:fetch-config:0.0.1 --filepath <my_path>\n
Step 6: Run the config file fetcher:
album run cellcanvas:fetch-config:0.0.1 --localhost localhost --port\n8080 --overlay_remote True --static_remote True --filepath\n~/Data/copick/cellcanvas_server/local_sshOverlay_sshStatic.json\n
Step 7: Install the client on your local machine:
album install\ncellcanvas:napari-cellcanvas:0.0.1\n
Step 8: Launch the client on your local machine:
album run cellcanvas:napari-cellcanvas:0.0.1 --copick_config_path <my path>\n
"}]}
\ No newline at end of file
diff --git a/tutorials/remote_workflow/index.html b/tutorials/remote_workflow/index.html
index 2d62f92..6e14873 100644
--- a/tutorials/remote_workflow/index.html
+++ b/tutorials/remote_workflow/index.html
@@ -375,14 +375,24 @@ ssh -L 8080:worker-host:8000 user.name@login-host -N -f
ssh -L 2222:login-host:22 user.name@login-host -N -f
-Step 4: Launch the server on the worker: album run cellcanvas:server:0.0.4
Step 5: Install the config file fetecher on your local machine: album install
-cellcanvas:fetch-config:0.0.1 --filepath <my_path>
Step 6: Run the config file fetcher: album run cellcanvas:fetch-config:0.0.1 --localhost localhost --port 8080 --overlay_remote True --static_remote True --filepath ~/Data/copick/cellcanvas_server/local_sshOverlay_sshStatic.json
Step 7: Install the client on your local machine: album install
-cellcanvas:napari-cellcanvas:0.0.1
Step 8: Launch the client on your local machine: album run
-cellcanvas:napari-cellcanvas:0.0.1 --copick_config_path <my path>
Step 4: Launch the server on the worker:
+album run cellcanvas:server:0.0.4
+
+Step 5: Install the config file fetecher on your local machine:
+album install cellcanvas:fetch-config:0.0.1 --filepath <my_path>
+
+Step 6: Run the config file fetcher:
+album run cellcanvas:fetch-config:0.0.1 --localhost localhost --port
+8080 --overlay_remote True --static_remote True --filepath
+~/Data/copick/cellcanvas_server/local_sshOverlay_sshStatic.json
+
+Step 7: Install the client on your local machine:
+album install
+cellcanvas:napari-cellcanvas:0.0.1
+
+Step 8: Launch the client on your local machine:
+album run cellcanvas:napari-cellcanvas:0.0.1 --copick_config_path <my path>
+