diff --git a/CNAME b/CNAME deleted file mode 100644 index d9cc3df..0000000 --- a/CNAME +++ /dev/null @@ -1 +0,0 @@ -docs.cellcanvas.org \ No newline at end of file diff --git a/search/search_index.json b/search/search_index.json index ac18cee..c686212 100644 --- a/search/search_index.json +++ b/search/search_index.json @@ -1 +1 @@ -{"config":{"lang":["en"],"separator":"[\\s\\-]+","pipeline":["stopWordFilter"]},"docs":[{"location":"","title":"CellCanvas","text":"

CellCanvas is a tool for building geometric models of cellular architecture from images.

CellCanvas combines machine learning with interactive visualization to facilitate the creation of geometric representations of cellular architectures.

"},{"location":"#what-can-cellcanvas-do","title":"What can CellCanvas do?","text":""},{"location":"#modalities","title":"Modalities","text":"

CellCanvas currently supports:

"},{"location":"quick_start/","title":"Quick Start","text":"
  1. Install album

  2. Setup the CellCanvas album catalog:

album add-catalog https://github.com/cellcanvas/album-catalog\n
  1. Browse the catalog.
"},{"location":"tutorials/remote_workflow/","title":"Tutorial: Remote Workflow","text":"

Step 1: Follow the quick start

Step 2: Install the server on the worker: album install cellcanvas:server:0.0.4

Step 3: Make a tunnel to the worker:

ssh -L 8080:worker-host:8000 user.name@login-host -N -f\nssh -L 2222:login-host:22 user.name@login-host -N -f\n

Step 4: Launch the server on the worker: album run cellcanvas:server:0.0.4

Step 5: Install the config file fetecher on your local machine: album install cellcanvas:fetch-config:0.0.1 --filepath <my_path>

Step 6: Run the config file fetcher: album run cellcanvas:fetch-config:0.0.1 --localhost localhost --port 8080 --overlay_remote True --static_remote True --filepath ~/Data/copick/cellcanvas_server/local_sshOverlay_sshStatic.json

Step 7: Install the client on your local machine: album install cellcanvas:napari-cellcanvas:0.0.1

Step 8: Launch the client on your local machine: album run cellcanvas:napari-cellcanvas:0.0.1 --copick_config_path <my path>

"}]} \ No newline at end of file +{"config":{"lang":["en"],"separator":"[\\s\\-]+","pipeline":["stopWordFilter"]},"docs":[{"location":"","title":"CellCanvas","text":"

CellCanvas is a tool for building geometric models of cellular architecture from images.

CellCanvas combines machine learning with interactive visualization to facilitate the creation of geometric representations of cellular architectures.

"},{"location":"#what-can-cellcanvas-do","title":"What can CellCanvas do?","text":""},{"location":"#modalities","title":"Modalities","text":"

CellCanvas currently supports:

"},{"location":"quick_start/","title":"Quick Start","text":"
  1. Install album

  2. Setup the CellCanvas album catalog:

album add-catalog https://github.com/cellcanvas/album-catalog\n
  1. Browse the catalog.
"},{"location":"tutorials/remote_workflow/","title":"Tutorial: Remote Workflow","text":"

Step 1: Follow the quick start

Step 2: Install the server on the worker: album install cellcanvas:server:0.0.4

Step 3: Make a tunnel to the worker:

ssh -L 8080:worker-host:8000 user.name@login-host -N -f\nssh -L 2222:login-host:22 user.name@login-host -N -f\n

Step 4: Launch the server on the worker:

album run cellcanvas:server:0.0.4\n

Step 5: Install the config file fetecher on your local machine:

album install cellcanvas:fetch-config:0.0.1 --filepath <my_path>\n

Step 6: Run the config file fetcher:

album run cellcanvas:fetch-config:0.0.1 --localhost localhost --port\n8080 --overlay_remote True --static_remote True --filepath\n~/Data/copick/cellcanvas_server/local_sshOverlay_sshStatic.json\n

Step 7: Install the client on your local machine:

album install\ncellcanvas:napari-cellcanvas:0.0.1\n

Step 8: Launch the client on your local machine:

album run cellcanvas:napari-cellcanvas:0.0.1 --copick_config_path <my path>\n
"}]} \ No newline at end of file diff --git a/tutorials/remote_workflow/index.html b/tutorials/remote_workflow/index.html index 2d62f92..6e14873 100644 --- a/tutorials/remote_workflow/index.html +++ b/tutorials/remote_workflow/index.html @@ -375,14 +375,24 @@

Tutorial: Remote Workflow

ssh -L 8080:worker-host:8000 user.name@login-host -N -f
 ssh -L 2222:login-host:22 user.name@login-host -N -f
 
-

Step 4: Launch the server on the worker: album run cellcanvas:server:0.0.4

-

Step 5: Install the config file fetecher on your local machine: album install -cellcanvas:fetch-config:0.0.1 --filepath <my_path>

-

Step 6: Run the config file fetcher: album run cellcanvas:fetch-config:0.0.1 --localhost localhost --port 8080 --overlay_remote True --static_remote True --filepath ~/Data/copick/cellcanvas_server/local_sshOverlay_sshStatic.json

-

Step 7: Install the client on your local machine: album install -cellcanvas:napari-cellcanvas:0.0.1

-

Step 8: Launch the client on your local machine: album run -cellcanvas:napari-cellcanvas:0.0.1 --copick_config_path <my path>

+

Step 4: Launch the server on the worker:

+
album run cellcanvas:server:0.0.4
+
+

Step 5: Install the config file fetecher on your local machine:

+
album install cellcanvas:fetch-config:0.0.1 --filepath <my_path>
+
+

Step 6: Run the config file fetcher:

+
album run cellcanvas:fetch-config:0.0.1 --localhost localhost --port
+8080 --overlay_remote True --static_remote True --filepath
+~/Data/copick/cellcanvas_server/local_sshOverlay_sshStatic.json
+
+

Step 7: Install the client on your local machine:

+
album install
+cellcanvas:napari-cellcanvas:0.0.1
+
+

Step 8: Launch the client on your local machine:

+
album run cellcanvas:napari-cellcanvas:0.0.1 --copick_config_path <my path>
+