diff --git a/brainglobe_registration/registration_widget.py b/brainglobe_registration/registration_widget.py index 60304c9..c11f4b9 100644 --- a/brainglobe_registration/registration_widget.py +++ b/brainglobe_registration/registration_widget.py @@ -27,7 +27,6 @@ from skimage.segmentation import find_boundaries from skimage.transform import rescale -from brainglobe_registration.elastix.register import run_registration from brainglobe_registration.utils.brainglobe_logo import header_widget from brainglobe_registration.utils.utils import ( adjust_napari_image_layer, @@ -221,6 +220,8 @@ def _on_adjust_moving_image_reset_button_click(self): adjust_napari_image_layer(self._moving_image, 0, 0, 0) def _on_run_button_click(self): + from brainglobe_registration.elastix.register import run_registration + current_atlas_slice = self._viewer.dims.current_step[0] result, parameters, registered_annotation_image = run_registration(