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3dIntracranial.json
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3dIntracranial.json
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{
"command-line": "3dIntracranial [ANAT] [PREFIX]",
"description": "tool description",
"inputs": [
{
"command-line-flag": "-anat",
"description": "Filename of anat dataset to be segmented [-min_val a] => Minimum voxel intensity limit Default: Internal PDF estimate for lower bound [-max_val b] => Maximum voxel intensity limit Default: Internal PDF estimate for upper bound [-min_conn m] => Minimum voxel connectivity to enter Default: m=4 [-max_conn n] => Maximum voxel connectivity to leave Default: n=2 [-nosmooth] => Suppress spatial smoothing of segmentation mask [-mask] => Generate functional image mask (complement) Default: Generate anatomical image [-quiet] => Suppress output to screen",
"id": "ANAT",
"name": "ANAT",
"optional": true,
"type": "String",
"value-key": "[ANAT]"
},
{
"command-line-flag": "-prefix",
"description": "Prefix name for file to contain segmented image ** NOTE **: The newer program 3dSkullStrip will probably give better segmentation results than 3dIntracranial! ----------------------------------------------------------------------- Examples: -------- 3dIntracranial -anat elvis+orig -prefix elvis_strip 3dIntracranial -min_val 30 -max_val 350 -anat elvis+orig -prefix strip 3dIntracranial -nosmooth -quiet -anat elvis+orig -prefix elvis_strip ----------------------------------------------------------------------- ++ Compile date = Sep 7 2018 {:}",
"id": "PREFIX",
"name": "PREFIX",
"optional": true,
"type": "String",
"value-key": "[PREFIX]"
}
],
"name": "tool name",
"schema-version": "0.5",
"suggested-resources": {
"cpu-cores": 1,
"ram": 1,
"walltime-estimate": 60
},
"tags": {},
"tool-version": "v0.1.0"
}