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3dGenFeatureDist.json
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3dGenFeatureDist.json
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{
"command-line": "3dGenFeatureDist [CLASSES] [OTHER] [NO_OTHER] [FEATURES] [SIG] [SAMP] [HSPEC] [PREFIX] [SHOWTHESEHISTS] [OVERWRITE] [DEBUG] [LABELTABLE]",
"description": "tool description",
"inputs": [
{
"command-line-flag": "-classes",
"description": "-classes 'CLASS_STRING': CLASS_STRING is a semicolon delimited string of class labels. For example",
"id": "CLASSES",
"name": "CLASSES",
"optional": true,
"type": "String",
"value-key": "[CLASSES]"
},
{
"command-line-flag": "-OTHER",
"description": "Add histograms for an 'OTHER' class that has a uniform pdf.",
"id": "OTHER",
"name": "OTHER",
"optional": true,
"type": "String",
"value-key": "[OTHER]"
},
{
"command-line-flag": "-no_OTHER",
"description": "Opposite of -OTHER.",
"id": "NO_OTHER",
"name": "NO_OTHER",
"optional": true,
"type": "String",
"value-key": "[NO_OTHER]"
},
{
"command-line-flag": "-features",
"description": "-features 'FEATURES_STRING': FEATURES_STRING is a semicolon delimited string of features. For example",
"id": "FEATURES",
"name": "FEATURES",
"optional": true,
"type": "String",
"value-key": "[FEATURES]"
},
{
"command-line-flag": "-sig",
"description": "-sig 'FEATURE_VOL1 FEATURE_VOL2 ...': Specify volumes that define the features. Each sub-brick is a feature and the sub-brick's name is used to name the feature. Multiple volumes get catenated. Each occurence of -sig option must be paired with a -samp option. Think of each pair of '-sig, -samp' options as describing data on the same voxel grid; Think from the same subject. When specifying training data from K subjects, you will end up using K pairs of '-sig, -samp'. All volumes from the kth -sig instance should have the same voxel grid as each other and as that of the kth -samp datasets.",
"id": "SIG",
"name": "SIG",
"optional": true,
"type": "String",
"value-key": "[SIG]"
},
{
"command-line-flag": "-samp",
"description": "-samp 'SAMPLE_VOX1 SAMPLE_VOX2 ...': Specify which voxels belong to each class of interest. Each of the volumes should contain voxel values (keys) that are defined in -labeltable. You can specify multiple volumes, they all get catenated. Any volume can contain voxels from 1 or more classes. Each occurence of -samp option must be paired with a -sig option. Think of each pair of '-sig, -samp' options as describing data on the same voxel grid; Think from the same subject. When specifying training data from K subjects, you will end up using K pairs of '-sig, -samp'. All volumes from the kth -samp instance should have the same voxel grid as each other and as that of the kth -sig datasets.",
"id": "SAMP",
"name": "SAMP",
"optional": true,
"type": "String",
"value-key": "[SAMP]"
},
{
"command-line-flag": "-hspec",
"description": "Set histogram parameters for feature FEATURE FEATURE: String label of feature MIN, MAX: Range of histogram NBINS: Number of bins Use this option to set the histogram parameters for the features for the automatic parameter selection was lousy. You can specify for multiple features by using multiple -hspec instances. The only condition is that all feature labels (FEATURE) must be part of the set named in -features.",
"id": "HSPEC",
"name": "HSPEC",
"optional": true,
"type": "String",
"value-key": "[HSPEC]"
},
{
"command-line-flag": "-prefix",
"description": "PREF is the prefix for all output volume that are not debugging related. default: GenFeatDist",
"id": "PREFIX",
"name": "PREFIX",
"optional": true,
"type": "String",
"value-key": "[PREFIX]"
},
{
"command-line-flag": "-ShowTheseHists",
"description": "Show histograms specified by HISTNAMES and quit. HISTNAMES can specify just one .niml.hist file or a bunch of them using a space, or comma separated list. List multiple names between quotes.",
"id": "SHOWTHESEHISTS",
"name": "SHOWTHESEHISTS",
"optional": true,
"type": "String",
"value-key": "[SHOWTHESEHISTS]"
},
{
"command-line-flag": "-overwrite",
"description": "An option common to almost all AFNI programs. It is automatically turned on if you provide no PREF.",
"id": "OVERWRITE",
"name": "OVERWRITE",
"optional": true,
"type": "String",
"value-key": "[OVERWRITE]"
},
{
"command-line-flag": "-debug",
"description": "Debugging level default: 1",
"id": "DEBUG",
"name": "DEBUG",
"optional": true,
"type": "String",
"value-key": "[DEBUG]"
},
{
"command-line-flag": "-labeltable",
"description": "Specify the label table default: 1",
"id": "LABELTABLE",
"name": "LABELTABLE",
"optional": true,
"type": "String",
"value-key": "[LABELTABLE]"
}
],
"name": "tool name",
"schema-version": "0.5",
"suggested-resources": {
"cpu-cores": 1,
"ram": 1,
"walltime-estimate": 60
},
"tags": {},
"tool-version": "v0.1.0"
}