c-cpp.yml

name: run superbuild and test

on:
  push:
    branches: [ master ]
    paths-ignore:
    - 'docker/Dockerfile'
    - 'docker/*yml'
    - '**.md'
    - 'jupyterhub/**'
    - 'VirtualBox/**'
    - '.github/workflows/*docker*'
    - 'CITATION.cff'
    - '.mailmap'
    
  pull_request:
    branches: [ master ]
    paths-ignore:
    - 'docker/Dockerfile'
    - 'docker/*yml'
    - '**.md'
    - 'jupyterhub/**'
    - 'VirtualBox/**'
    - '.github/workflows/*docker*'
    

jobs:
  build:

    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        include:
        - os: ubuntu-latest
          compiler: gcc
          compiler_version: 9
          BUILD_TYPE: "Release"
          EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=ON -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON"
          DEVEL_BUILD: "OFF"
        - os: ubuntu-latest
          compiler: gcc
          compiler_version: 9
          BUILD_TYPE: "Release"
          EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=ON -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=OFF -DUSE_SYSTEM_HDF5=OFF -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=OFF"
          DEVEL_BUILD: "OFF"
        #- os: ubuntu-latest
        #  compiler: gcc
        #  compiler_version: 9
        #  BUILD_TYPE: "Release"
        #  EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=ON -DUSE_SYSTEM_Boost=OFF -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON"
        #  DEVEL_BUILD: "OFF"
        - os: ubuntu-latest
          compiler: gcc
          compiler_version: 9
          BUILD_TYPE: "Release"
          EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=ON -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON -DUSE_SYSTEM_GTest=OFF"
          DEVEL_BUILD: "OFF"
        - os: ubuntu-latest
          compiler: gcc
          compiler_version: 11
          BUILD_TYPE: "Release"
          EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=OFF -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON -DUSE_ROOT:BOOL=ON"
          DEVEL_BUILD: "ON"
        - os: ubuntu-latest
          compiler: gcc
          compiler_version: 11
          BUILD_TYPE: "Release"
          EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=OFF -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON -DUSE_ROOT:BOOL=ON"
          DEVEL_BUILD: "OFF"
      # let's run all of them, as opposed to aborting when one fails
      fail-fast: false

    steps:
    - uses: actions/checkout@v3

    - name: disk space
      shell: bash
      run: |
          case ${{matrix.os}} in
            (ubuntu* | macOS*)
              sudo .github/workflows/GHA_increase_disk_space.sh
              ;;
            (windows*)
              # no idea what to do here
              ;;
           esac

    - name: install_dependencies
      run: 
          cd docker;
          sudo bash raw-ubuntu.sh;
          sudo bash build_essential-ubuntu.sh;
          sudo bash build_python-ubuntu.sh;
          sudo bash build_gadgetron-ubuntu.sh;
          sudo bash build_system-ubuntu.sh;
          PYTHON_EXECUTABLE=python3 PYTHON_INSTALL_DIR=~/virtualenv bash user_python-ubuntu.sh;
    - name: ccache
      uses: hendrikmuhs/ccache-action@v1.2
      with:
        key: ${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.compiler_version }}-${{ matrix.BUILD_TYPE }}
        max-size: "900M"

    - name: set_compiler_variables
      shell: bash
      run: |
          set -ex
          if test 'XX${{ matrix.compiler }}' = 'XXclang'; then
            CC="clang"
            CXX="clang++"
          elif test 'XX${{ matrix.compiler }}' = 'XXgcc'; then
            CC="gcc"
            CXX="g++"
          fi
          if test 'XX${{ matrix.compiler_version }}' != 'XX'; then
            CC=${CC}-${{ matrix.compiler_version }}
            CXX=${CXX}-${{ matrix.compiler_version }}
            sudo apt install -yq ${CXX} ${CC}
          fi

          export CC CXX
          # make available to jobs below
          echo CC="$CC" >> $GITHUB_ENV
          echo CXX="$CXX" >> $GITHUB_ENV
    - name: configure
      shell: bash
      env:
          EXTRA_BUILD_FLAGS: ${{ matrix.EXTRA_BUILD_FLAGS }}
          CMAKE_BUILD_TYPE: ${{ matrix.CMAKE_BUILD_TYPE }}
          DEVEL_BUILD: "-DDEVEL_BUILD=${{ matrix.DEVEL_BUILD }}"
      run: |
          set -ex;
          export PATH="/usr/lib/ccache:/usr/local/opt/ccache/libexec:$PATH"
          export superbuild=`pwd`;
          export BUILD_FLAGS="-DCMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE} -DCMAKE_INSTALL_PREFIX=~/install -DPYVER=3 -DUSE_SYSTEM_RocksDB=OFF -DBUILD_TESTING_Gadgetron:BOOL=ON";
          mkdir -p build/;
          cd build;
          source ~/virtualenv/bin/activate;
          cmake -S ${GITHUB_WORKSPACE} ${BUILD_FLAGS} ${EXTRA_BUILD_FLAGS} ${DEVEL_BUILD};
    - name: build
      shell: bash
      run: | 
          cd ${GITHUB_WORKSPACE}/build;
          source ~/virtualenv/bin/activate;
          cmake --build . -j 2;

    # Enable tmate debugging of manually-triggered workflows if the input option was provided
    - name: Setup tmate session if triggered
      uses: mxschmitt/action-tmate@v3
      timeout-minutes: 15
      if: ${{ github.event_name == 'workflow_dispatch' && github.event.inputs.debug_enabled }}

    - name: Upload build log files for debugging
      uses: actions/upload-artifact@v3
      if: failure()
      with:
        name: build_log_files-${{ matrix.os }}-${{ matrix.compiler }}${{ matrix.compiler_version }}-${{ matrix.BUILD_TYPE }}-DEVEL=${{ matrix.DEVEL_BUILD }}-run=${{ github.run_number }}-id=${{ github.run_id }}
        path: ${{ github.workspace }}/build/**/*.log
        retention-days: 7

    - name: tests
      shell: bash
      run: 
          bash docker/ctest_sirf.sh