Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add ome-ngff metadata output to the zarr output of the fused images #41

Open
3 tasks
kgabor opened this issue Mar 10, 2023 · 1 comment
Open
3 tasks

Comments

@kgabor
Copy link

kgabor commented Mar 10, 2023

This ticket is to track the hackathon effort to make the multiview-reconstruction fusion zarr output ome (0.4) compatible.

  • Add a simple ome-ngff .zattrs "top-level" metadata file.
  • Pretty-print the json.
  • Use subdirs instead of "." separator.

Development branch code is currently at AllenNeuralDynamics/PreibischLab-multiview-reconstruction.

@kgabor
Copy link
Author

kgabor commented Mar 20, 2023

  • Use gson annotations on MultiScaleImageto mark fields to be serialized. Do not use transient keyword which always prevents serialization. This could cause problems if instances will be used within Spark jobs.
  • Add voxelsize info to ome-zarr output.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant