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Overview

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This repository contains the data used to demonstrate the utility of +visiumStitched. +Three Visium +capture areas were collected from the lateral septum of the postmortem +human brain from one donor. We use Fiji and +visiumStitched to stitch the gene-expression and imaging +data into one sample, containing the entire lateral septum, for +downstream analysis.

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If you tweet about this website, the data or the R package please use +the #visiumStitched hashtag. You can find previous tweets +that way as shown +here.

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Thank you for your interest in our work!

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Study Design

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TODO: add figure 1 and caption

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Internal

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The code in this repository follows the organization from https://github.com/LieberInstitute/template_project +following the guidelines from organizing-your-work..

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Introductory Material

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Check out this +guide to using visiumStitched, which enabled the +integration of all three capture areas for this project.

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TODO: embed YT video demonstrating how to use Fiji

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