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testing-and-coverage.yml
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# This workflow will install Python dependencies, run tests and report code coverage with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: Unit test and code coverage
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
jobs:
build:
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
strategy:
matrix:
python-version: ['3.9', '3.10', '3.11']
steps:
- uses: actions/checkout@v3
- uses: conda-incubator/setup-miniconda@v2
with:
python-version: ${{ matrix.python-version }}
channels: conda-forge,defaults
channel-priority: strict
show-channel-urls: true
use-mamba: true
environment-file: ci-environment.yml
activate-environment: deepdisc
- name: Install dependencies
run: |
sudo apt-get update
python -m pip install --upgrade pip
pip install .
pip install .[dev]
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
- name: Run unit tests with pytest
run: |
python -m pytest tests --cov=deepdisc --cov-report=xml
- name: Upload coverage report to codecov
uses: codecov/codecov-action@v3