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b/log-files/2024-09-07_08-54-51/Test1D3DLinearEllipticSolver_valgrind.txt new file mode 100644 index 000000000..bb7835869 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/Test1D3DLinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24915== Memcheck, a memory error detector +==24915== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24915== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24915== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/Test1D3DLinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==24915== Parent PID: 23903 +==24915== +==24915== +==24915== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24915== Open file descriptor 12: +==24915== at 0x84E707D: pipe (pipe.c:29) +==24915== by 0x104D507D: ??? +==24915== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24915== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24915== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24915== by 0x6AACD38: PetscInitialize (pinit.c:924) +==24915== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24915== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24915== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24915== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24915== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24915== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24915== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24915== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18) +==24915== +==24915== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24915== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==24915== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24915== by 0x7D3B822: ??? +==24915== by 0x7D3B96F: ??? +==24915== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24915== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24915== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24915== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24915== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24915== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24915== by 0x6AACD38: PetscInitialize (pinit.c:924) +==24915== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24915== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24915== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24915== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24915== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24915== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24915== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24915== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18) +==24915== +==24915== Open file descriptor 115: +==24915== +==24915== +==24915== Open file descriptor 112: +==24915== +==24915== +==24915== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1D3DLinearEllipticSolver_valgrind.txt +==24915== +==24915== +==24915== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24915== +==24915== +==24915== +==24915== HEAP SUMMARY: +==24915== in use at exit: 618,254 bytes in 8,238 blocks +==24915== total heap usage: 51,119 allocs, 42,881 frees, 1,339,258,637 bytes allocated +==24915== +==24915== LEAK SUMMARY: +==24915== definitely lost: 0 bytes in 0 blocks +==24915== indirectly lost: 0 bytes in 0 blocks +==24915== possibly lost: 0 bytes in 0 blocks +==24915== still reachable: 24 bytes in 2 blocks +==24915== suppressed: 618,230 bytes in 8,236 blocks +==24915== Reachable blocks (those to which a pointer was found) are not shown. +==24915== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24915== +==24915== For lists of detected and suppressed errors, rerun with: -s +==24915== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt b/log-files/2024-09-07_08-54-51/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt new file mode 100644 index 000000000..25649a2e9 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt @@ -0,0 +1,73 @@ +==43290== Memcheck, a memory error detector +==43290== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43290== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43290== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/Test1dMonodomainShannonCvodeBenchmarks -malloc_debug -malloc_dump -memory_info +==43290== Parent PID: 23903 +==43290== +==43290== +==43290== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43290== Open file descriptor 12: +==43290== at 0xA7C307D: pipe (pipe.c:29) +==43290== by 0x1432407D: ??? +==43290== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43290== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43290== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43290== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==43290== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43290== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43290== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43290== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43290== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43290== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43290== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43290== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18) +==43290== +==43290== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43290== at 0xA7C7A1C: __open_nocancel (open64_nocancel.c:39) +==43290== by 0xA74BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43290== by 0xA0E4822: ??? +==43290== by 0xA0E496F: ??? +==43290== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43290== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43290== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43290== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43290== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43290== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43290== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==43290== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43290== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43290== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43290== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43290== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43290== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43290== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43290== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18) +==43290== +==43290== Open file descriptor 115: +==43290== +==43290== +==43290== Open file descriptor 112: +==43290== +==43290== +==43290== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt +==43290== +==43290== +==43290== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43290== +==43290== +==43290== +==43290== HEAP SUMMARY: +==43290== in use at exit: 618,743 bytes in 8,244 blocks +==43290== total heap usage: 319,600 allocs, 311,356 frees, 1,398,098,396 bytes allocated +==43290== +==43290== LEAK SUMMARY: +==43290== definitely lost: 0 bytes in 0 blocks +==43290== indirectly lost: 0 bytes in 0 blocks +==43290== possibly lost: 0 bytes in 0 blocks +==43290== still reachable: 24 bytes in 2 blocks +==43290== suppressed: 618,719 bytes in 8,242 blocks +==43290== Reachable blocks (those to which a pointer was found) are not shown. +==43290== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43290== +==43290== For lists of detected and suppressed errors, rerun with: -s +==43290== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 42 from 34) diff --git a/log-files/2024-09-07_08-54-51/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt b/log-files/2024-09-07_08-54-51/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt new file mode 100644 index 000000000..6478d3031 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt @@ -0,0 +1,73 @@ +==26100== Memcheck, a memory error detector +==26100== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26100== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26100== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info +==26100== Parent PID: 23903 +==26100== +==26100== +==26100== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26100== Open file descriptor 12: +==26100== at 0xF7F907D: pipe (pipe.c:29) +==26100== by 0x196AD07D: ??? +==26100== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26100== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26100== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26100== by 0x10127D38: PetscInitialize (pinit.c:924) +==26100== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26100== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26100== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26100== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26100== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26100== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26100== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26100== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) +==26100== +==26100== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26100== at 0xF7FDA1C: __open_nocancel (open64_nocancel.c:39) +==26100== by 0xF781BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26100== by 0xF136822: ??? +==26100== by 0xF13696F: ??? +==26100== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26100== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26100== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26100== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26100== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26100== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26100== by 0x10127D38: PetscInitialize (pinit.c:924) +==26100== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26100== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26100== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26100== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26100== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26100== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26100== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26100== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) +==26100== +==26100== Open file descriptor 115: +==26100== +==26100== +==26100== Open file descriptor 112: +==26100== +==26100== +==26100== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt +==26100== +==26100== +==26100== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26100== +==26100== +==26100== +==26100== HEAP SUMMARY: +==26100== in use at exit: 618,350 bytes in 8,239 blocks +==26100== total heap usage: 1,124,534 allocs, 1,116,295 frees, 1,415,927,715 bytes allocated +==26100== +==26100== LEAK SUMMARY: +==26100== definitely lost: 0 bytes in 0 blocks +==26100== indirectly lost: 0 bytes in 0 blocks +==26100== possibly lost: 0 bytes in 0 blocks +==26100== still reachable: 56 bytes in 3 blocks +==26100== suppressed: 618,294 bytes in 8,236 blocks +==26100== Reachable blocks (those to which a pointer was found) are not shown. +==26100== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26100== +==26100== For lists of detected and suppressed errors, rerun with: -s +==26100== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestAbstractAnalyticJacobian_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAbstractAnalyticJacobian_valgrind.txt new file mode 100644 index 000000000..d0c4f4262 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAbstractAnalyticJacobian_valgrind.txt @@ -0,0 +1,73 @@ +==24833== Memcheck, a memory error detector +==24833== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24833== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24833== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractAnalyticJacobian -malloc_debug -malloc_dump -memory_info +==24833== Parent PID: 23903 +==24833== +==24833== +==24833== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24833== Open file descriptor 12: +==24833== at 0x4F1007D: pipe (pipe.c:29) +==24833== by 0xB1E607D: ??? +==24833== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24833== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24833== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24833== by 0x5308D38: PetscInitialize (pinit.c:924) +==24833== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24833== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24833== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24833== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24833== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24833== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24833== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24833== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18) +==24833== +==24833== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24833== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39) +==24833== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24833== by 0x4B76822: ??? +==24833== by 0x4B7696F: ??? +==24833== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24833== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24833== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24833== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24833== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24833== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24833== by 0x5308D38: PetscInitialize (pinit.c:924) +==24833== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24833== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24833== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24833== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24833== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24833== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24833== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24833== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18) +==24833== +==24833== Open file descriptor 115: +==24833== +==24833== +==24833== Open file descriptor 112: +==24833== +==24833== +==24833== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractAnalyticJacobian_valgrind.txt +==24833== +==24833== +==24833== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24833== +==24833== +==24833== +==24833== HEAP SUMMARY: +==24833== in use at exit: 617,902 bytes in 8,238 blocks +==24833== total heap usage: 45,031 allocs, 36,793 frees, 1,338,170,049 bytes allocated +==24833== +==24833== LEAK SUMMARY: +==24833== definitely lost: 0 bytes in 0 blocks +==24833== indirectly lost: 0 bytes in 0 blocks +==24833== possibly lost: 0 bytes in 0 blocks +==24833== still reachable: 24 bytes in 2 blocks +==24833== suppressed: 617,878 bytes in 8,236 blocks +==24833== Reachable blocks (those to which a pointer was found) are not shown. +==24833== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24833== +==24833== For lists of detected and suppressed errors, rerun with: -s +==24833== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestAbstractContinuumMechanicsAssembler_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAbstractContinuumMechanicsAssembler_valgrind.txt new file mode 100644 index 000000000..1631cceae --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAbstractContinuumMechanicsAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25139== Memcheck, a memory error detector +==25139== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25139== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25139== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestAbstractContinuumMechanicsAssembler -malloc_debug -malloc_dump -memory_info +==25139== Parent PID: 23903 +==25139== +==25139== +==25139== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25139== Open file descriptor 12: +==25139== at 0x84E707D: pipe (pipe.c:29) +==25139== by 0x104D507D: ??? +==25139== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25139== by 0x8B4E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25139== by 0x8AE7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25139== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25139== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25139== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25139== by 0x1507F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25139== by 0x14B24D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25139== by 0x14E462: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25139== by 0x14E302: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25139== by 0x14E999: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25139== by 0x149675: main (TestAbstractContinuumMechanicsAssembler.cpp:19) +==25139== +==25139== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25139== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25139== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25139== by 0x7D3B822: ??? +==25139== by 0x7D3B96F: ??? +==25139== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25139== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25139== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25139== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25139== by 0x8B4E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25139== by 0x8AE7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25139== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25139== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25139== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25139== by 0x1507F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25139== by 0x14B24D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25139== by 0x14E462: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25139== by 0x14E302: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25139== by 0x14E999: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25139== by 0x149675: main (TestAbstractContinuumMechanicsAssembler.cpp:19) +==25139== +==25139== Open file descriptor 115: +==25139== +==25139== +==25139== Open file descriptor 112: +==25139== +==25139== +==25139== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractContinuumMechanicsAssembler_valgrind.txt +==25139== +==25139== +==25139== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25139== +==25139== +==25139== +==25139== HEAP SUMMARY: +==25139== in use at exit: 618,254 bytes in 8,238 blocks +==25139== total heap usage: 50,430 allocs, 42,192 frees, 1,339,923,972 bytes allocated +==25139== +==25139== LEAK SUMMARY: +==25139== definitely lost: 0 bytes in 0 blocks +==25139== indirectly lost: 0 bytes in 0 blocks +==25139== possibly lost: 0 bytes in 0 blocks +==25139== still reachable: 24 bytes in 2 blocks +==25139== suppressed: 618,230 bytes in 8,236 blocks +==25139== Reachable blocks (those to which a pointer was found) are not shown. +==25139== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25139== +==25139== For lists of detected and suppressed errors, rerun with: -s +==25139== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestAbstractContractionCellFactory_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAbstractContractionCellFactory_valgrind.txt new file mode 100644 index 000000000..dbbcfd8b4 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAbstractContractionCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==43411== Memcheck, a memory error detector +==43411== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43411== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43411== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestAbstractContractionCellFactory -malloc_debug -malloc_dump -memory_info +==43411== Parent PID: 23903 +==43411== +==43411== +==43411== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43411== Open file descriptor 12: +==43411== at 0xA8D007D: pipe (pipe.c:29) +==43411== by 0x1432407D: ??? +==43411== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43411== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43411== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43411== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43411== by 0xA1B71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43411== by 0xA1B7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43411== by 0x11F78E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43411== by 0x11A553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43411== by 0x11C978: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43411== by 0x11C873: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43411== by 0x11CE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43411== by 0x118D55: main (TestAbstractContractionCellFactory.cpp:18) +==43411== +==43411== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43411== at 0xA8D4A1C: __open_nocancel (open64_nocancel.c:39) +==43411== by 0xA858BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43411== by 0xA1F1822: ??? +==43411== by 0xA1F196F: ??? +==43411== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43411== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43411== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43411== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43411== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43411== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43411== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43411== by 0xA1B71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43411== by 0xA1B7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43411== by 0x11F78E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43411== by 0x11A553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43411== by 0x11C978: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43411== by 0x11C873: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43411== by 0x11CE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43411== by 0x118D55: main (TestAbstractContractionCellFactory.cpp:18) +==43411== +==43411== Open file descriptor 115: +==43411== +==43411== +==43411== Open file descriptor 112: +==43411== +==43411== +==43411== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractContractionCellFactory_valgrind.txt +==43411== +==43411== +==43411== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43411== +==43411== +==43411== +==43411== HEAP SUMMARY: +==43411== in use at exit: 618,814 bytes in 8,248 blocks +==43411== total heap usage: 169,218 allocs, 160,970 frees, 1,363,021,623 bytes allocated +==43411== +==43411== LEAK SUMMARY: +==43411== definitely lost: 0 bytes in 0 blocks +==43411== indirectly lost: 0 bytes in 0 blocks +==43411== possibly lost: 0 bytes in 0 blocks +==43411== still reachable: 24 bytes in 2 blocks +==43411== suppressed: 618,790 bytes in 8,246 blocks +==43411== Reachable blocks (those to which a pointer was found) are not shown. +==43411== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43411== +==43411== For lists of detected and suppressed errors, rerun with: -s +==43411== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2024-09-07_08-54-51/TestAbstractCvodeSystem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAbstractCvodeSystem_valgrind.txt new file mode 100644 index 000000000..e1dd2e46c --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAbstractCvodeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24826== Memcheck, a memory error detector +==24826== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24826== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24826== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractCvodeSystem -malloc_debug -malloc_dump -memory_info +==24826== Parent PID: 23903 +==24826== +==24826== +==24826== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24826== Open file descriptor 12: +==24826== at 0x643E07D: pipe (pipe.c:29) +==24826== by 0xB1CA07D: ??? +==24826== by 0x8CC44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24826== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24826== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24826== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24826== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24826== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24826== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24826== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24826== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24826== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24826== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24826== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) +==24826== +==24826== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24826== at 0x6442A1C: __open_nocancel (open64_nocancel.c:39) +==24826== by 0x63C6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24826== by 0x4B76822: ??? +==24826== by 0x4B7696F: ??? +==24826== by 0x8D696DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24826== by 0x8D69938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24826== by 0x8D1F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24826== by 0x8CC42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24826== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24826== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24826== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24826== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24826== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24826== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24826== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24826== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24826== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24826== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24826== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) +==24826== +==24826== Open file descriptor 115: +==24826== +==24826== +==24826== Open file descriptor 112: +==24826== +==24826== +==24826== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractCvodeSystem_valgrind.txt +==24826== +==24826== +==24826== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24826== +==24826== +==24826== +==24826== HEAP SUMMARY: +==24826== in use at exit: 617,886 bytes in 8,238 blocks +==24826== total heap usage: 46,488 allocs, 38,250 frees, 1,338,366,229 bytes allocated +==24826== +==24826== LEAK SUMMARY: +==24826== definitely lost: 0 bytes in 0 blocks +==24826== indirectly lost: 0 bytes in 0 blocks +==24826== possibly lost: 0 bytes in 0 blocks +==24826== still reachable: 24 bytes in 2 blocks +==24826== suppressed: 617,862 bytes in 8,236 blocks +==24826== Reachable blocks (those to which a pointer was found) are not shown. +==24826== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24826== +==24826== For lists of detected and suppressed errors, rerun with: -s +==24826== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestAbstractFeCableIntegralAssembler_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAbstractFeCableIntegralAssembler_valgrind.txt new file mode 100644 index 000000000..9d2de393f --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAbstractFeCableIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25046== Memcheck, a memory error detector +==25046== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25046== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25046== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeCableIntegralAssembler -malloc_debug -malloc_dump -memory_info +==25046== Parent PID: 23903 +==25046== +==25046== +==25046== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25046== Open file descriptor 12: +==25046== at 0x84E707D: pipe (pipe.c:29) +==25046== by 0x104D507D: ??? +==25046== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25046== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25046== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25046== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25046== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25046== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25046== by 0x136062: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25046== by 0x130C2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25046== by 0x133CD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25046== by 0x133B72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25046== by 0x134209: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25046== by 0x12F055: main (TestAbstractFeCableIntegralAssembler.cpp:19) +==25046== +==25046== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25046== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25046== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25046== by 0x7D3B822: ??? +==25046== by 0x7D3B96F: ??? +==25046== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25046== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25046== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25046== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25046== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25046== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25046== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25046== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25046== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25046== by 0x136062: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25046== by 0x130C2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25046== by 0x133CD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25046== by 0x133B72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25046== by 0x134209: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25046== by 0x12F055: main (TestAbstractFeCableIntegralAssembler.cpp:19) +==25046== +==25046== Open file descriptor 115: +==25046== +==25046== +==25046== Open file descriptor 112: +==25046== +==25046== +==25046== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeCableIntegralAssembler_valgrind.txt +==25046== +==25046== +==25046== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25046== +==25046== +==25046== +==25046== HEAP SUMMARY: +==25046== in use at exit: 618,254 bytes in 8,238 blocks +==25046== total heap usage: 59,952 allocs, 51,714 frees, 1,339,371,656 bytes allocated +==25046== +==25046== LEAK SUMMARY: +==25046== definitely lost: 0 bytes in 0 blocks +==25046== indirectly lost: 0 bytes in 0 blocks +==25046== possibly lost: 0 bytes in 0 blocks +==25046== still reachable: 24 bytes in 2 blocks +==25046== suppressed: 618,230 bytes in 8,236 blocks +==25046== Reachable blocks (those to which a pointer was found) are not shown. +==25046== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25046== +==25046== For lists of detected and suppressed errors, rerun with: -s +==25046== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt new file mode 100644 index 000000000..96e7b9099 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25055== Memcheck, a memory error detector +==25055== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25055== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25055== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeSurfaceIntegralAssembler -malloc_debug -malloc_dump -memory_info +==25055== Parent PID: 23903 +==25055== +==25055== +==25055== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25055== Open file descriptor 12: +==25055== at 0x84E707D: pipe (pipe.c:29) +==25055== by 0x104D507D: ??? +==25055== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25055== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25055== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25055== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25055== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25055== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25055== by 0x12D738: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25055== by 0x128933: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25055== by 0x12B4AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25055== by 0x12B3A5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25055== by 0x12B9B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25055== by 0x127135: main (TestAbstractFeSurfaceIntegralAssembler.cpp:18) +==25055== +==25055== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25055== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25055== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25055== by 0x7D3B822: ??? +==25055== by 0x7D3B96F: ??? +==25055== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25055== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25055== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25055== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25055== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25055== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25055== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25055== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25055== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25055== by 0x12D738: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25055== by 0x128933: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25055== by 0x12B4AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25055== by 0x12B3A5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25055== by 0x12B9B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25055== by 0x127135: main (TestAbstractFeSurfaceIntegralAssembler.cpp:18) +==25055== +==25055== Open file descriptor 115: +==25055== +==25055== +==25055== Open file descriptor 112: +==25055== +==25055== +==25055== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt +==25055== +==25055== +==25055== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25055== +==25055== +==25055== +==25055== HEAP SUMMARY: +==25055== in use at exit: 618,254 bytes in 8,238 blocks +==25055== total heap usage: 47,971 allocs, 39,733 frees, 1,338,474,008 bytes allocated +==25055== +==25055== LEAK SUMMARY: +==25055== definitely lost: 0 bytes in 0 blocks +==25055== indirectly lost: 0 bytes in 0 blocks +==25055== possibly lost: 0 bytes in 0 blocks +==25055== still reachable: 24 bytes in 2 blocks +==25055== suppressed: 618,230 bytes in 8,236 blocks +==25055== Reachable blocks (those to which a pointer was found) are not shown. +==25055== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25055== +==25055== For lists of detected and suppressed errors, rerun with: -s +==25055== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestAbstractFeVolumeIntegralAssembler_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAbstractFeVolumeIntegralAssembler_valgrind.txt new file mode 100644 index 000000000..b0858f0f1 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAbstractFeVolumeIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25056== Memcheck, a memory error detector +==25056== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25056== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25056== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeVolumeIntegralAssembler -malloc_debug -malloc_dump -memory_info +==25056== Parent PID: 23903 +==25056== +==25056== +==25056== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25056== Open file descriptor 12: +==25056== at 0x84E707D: pipe (pipe.c:29) +==25056== by 0x104D507D: ??? +==25056== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25056== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25056== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25056== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25056== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25056== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25056== by 0x15E73C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25056== by 0x15920D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25056== by 0x15C3AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25056== by 0x15C24C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25056== by 0x15C8E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25056== by 0x157635: main (TestAbstractFeVolumeIntegralAssembler.cpp:19) +==25056== +==25056== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25056== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25056== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25056== by 0x7D3B822: ??? +==25056== by 0x7D3B96F: ??? +==25056== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25056== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25056== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25056== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25056== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25056== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25056== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25056== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25056== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25056== by 0x15E73C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25056== by 0x15920D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25056== by 0x15C3AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25056== by 0x15C24C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25056== by 0x15C8E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25056== by 0x157635: main (TestAbstractFeVolumeIntegralAssembler.cpp:19) +==25056== +==25056== Open file descriptor 115: +==25056== +==25056== +==25056== Open file descriptor 112: +==25056== +==25056== +==25056== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeVolumeIntegralAssembler_valgrind.txt +==25056== +==25056== +==25056== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25056== +==25056== +==25056== +==25056== HEAP SUMMARY: +==25056== in use at exit: 618,254 bytes in 8,238 blocks +==25056== total heap usage: 57,061 allocs, 48,823 frees, 1,339,697,903 bytes allocated +==25056== +==25056== LEAK SUMMARY: +==25056== definitely lost: 0 bytes in 0 blocks +==25056== indirectly lost: 0 bytes in 0 blocks +==25056== possibly lost: 0 bytes in 0 blocks +==25056== still reachable: 24 bytes in 2 blocks +==25056== suppressed: 618,230 bytes in 8,236 blocks +==25056== Reachable blocks (those to which a pointer was found) are not shown. +==25056== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25056== +==25056== For lists of detected and suppressed errors, rerun with: -s +==25056== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestAbstractFunctionalCalculator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAbstractFunctionalCalculator_valgrind.txt new file mode 100644 index 000000000..fa86c9aa8 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAbstractFunctionalCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==25070== Memcheck, a memory error detector +==25070== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25070== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25070== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFunctionalCalculator -malloc_debug -malloc_dump -memory_info +==25070== Parent PID: 23903 +==25070== +==25070== +==25070== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25070== Open file descriptor 12: +==25070== at 0x858F07D: pipe (pipe.c:29) +==25070== by 0x104D607D: ??? +==25070== by 0xBE164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25070== by 0x7DB0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25070== by 0x7D49D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25070== by 0x6A1DD38: PetscInitialize (pinit.c:924) +==25070== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25070== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25070== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25070== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25070== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25070== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25070== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25070== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) +==25070== +==25070== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25070== at 0x8593A1C: __open_nocancel (open64_nocancel.c:39) +==25070== by 0x8517BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25070== by 0x7CAC822: ??? +==25070== by 0x7CAC96F: ??? +==25070== by 0xBEBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25070== by 0xBEBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25070== by 0xBE71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25070== by 0xBE162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25070== by 0x7DB0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25070== by 0x7D49D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25070== by 0x6A1DD38: PetscInitialize (pinit.c:924) +==25070== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25070== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25070== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25070== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25070== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25070== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25070== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25070== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) +==25070== +==25070== Open file descriptor 115: +==25070== +==25070== +==25070== Open file descriptor 112: +==25070== +==25070== +==25070== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFunctionalCalculator_valgrind.txt +==25070== +==25070== +==25070== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25070== +==25070== +==25070== +==25070== HEAP SUMMARY: +==25070== in use at exit: 618,254 bytes in 8,238 blocks +==25070== total heap usage: 89,962 allocs, 81,724 frees, 1,340,570,961 bytes allocated +==25070== +==25070== LEAK SUMMARY: +==25070== definitely lost: 0 bytes in 0 blocks +==25070== indirectly lost: 0 bytes in 0 blocks +==25070== possibly lost: 0 bytes in 0 blocks +==25070== still reachable: 24 bytes in 2 blocks +==25070== suppressed: 618,230 bytes in 8,236 blocks +==25070== Reachable blocks (those to which a pointer was found) are not shown. +==25070== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25070== +==25070== For lists of detected and suppressed errors, rerun with: -s +==25070== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestAbstractIvpOdeSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAbstractIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..d3023be30 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAbstractIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24812== Memcheck, a memory error detector +==24812== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24812== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24812== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24812== Parent PID: 23903 +==24812== +==24812== +==24812== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24812== Open file descriptor 12: +==24812== at 0x503907D: pipe (pipe.c:29) +==24812== by 0xB1E607D: ??? +==24812== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24812== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24812== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24812== by 0x5308D38: PetscInitialize (pinit.c:924) +==24812== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24812== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24812== by 0x13ABB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24812== by 0x13250D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24812== by 0x13549A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24812== by 0x13533A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24812== by 0x1359D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24812== by 0x12FAD5: main (TestAbstractIvpOdeSolver.cpp:19) +==24812== +==24812== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24812== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24812== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24812== by 0x4B76822: ??? +==24812== by 0x4B7696F: ??? +==24812== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24812== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24812== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24812== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24812== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24812== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24812== by 0x5308D38: PetscInitialize (pinit.c:924) +==24812== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24812== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24812== by 0x13ABB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24812== by 0x13250D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24812== by 0x13549A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24812== by 0x13533A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24812== by 0x1359D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24812== by 0x12FAD5: main (TestAbstractIvpOdeSolver.cpp:19) +==24812== +==24812== Open file descriptor 115: +==24812== +==24812== +==24812== Open file descriptor 112: +==24812== +==24812== +==24812== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractIvpOdeSolver_valgrind.txt +==24812== +==24812== +==24812== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24812== +==24812== +==24812== +==24812== HEAP SUMMARY: +==24812== in use at exit: 617,902 bytes in 8,238 blocks +==24812== total heap usage: 138,422 allocs, 130,184 frees, 1,346,069,052 bytes allocated +==24812== +==24812== LEAK SUMMARY: +==24812== definitely lost: 0 bytes in 0 blocks +==24812== indirectly lost: 0 bytes in 0 blocks +==24812== possibly lost: 0 bytes in 0 blocks +==24812== still reachable: 24 bytes in 2 blocks +==24812== suppressed: 617,878 bytes in 8,236 blocks +==24812== Reachable blocks (those to which a pointer was found) are not shown. +==24812== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24812== +==24812== For lists of detected and suppressed errors, rerun with: -s +==24812== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestAbstractOdeSystem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAbstractOdeSystem_valgrind.txt new file mode 100644 index 000000000..b6dc1b104 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAbstractOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24827== Memcheck, a memory error detector +==24827== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24827== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24827== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractOdeSystem -malloc_debug -malloc_dump -memory_info +==24827== Parent PID: 23903 +==24827== +==24827== +==24827== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24827== Open file descriptor 12: +==24827== at 0x640707D: pipe (pipe.c:29) +==24827== by 0xB1E407D: ??? +==24827== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24827== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24827== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24827== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24827== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24827== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24827== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24827== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24827== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24827== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24827== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24827== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) +==24827== +==24827== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24827== at 0x640BA1C: __open_nocancel (open64_nocancel.c:39) +==24827== by 0x638FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24827== by 0x4B76822: ??? +==24827== by 0x4B7696F: ??? +==24827== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24827== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24827== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24827== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24827== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24827== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24827== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24827== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24827== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24827== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24827== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24827== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24827== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24827== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24827== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) +==24827== +==24827== Open file descriptor 115: +==24827== +==24827== +==24827== Open file descriptor 112: +==24827== +==24827== +==24827== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractOdeSystem_valgrind.txt +==24827== +==24827== +==24827== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24827== +==24827== +==24827== +==24827== HEAP SUMMARY: +==24827== in use at exit: 617,902 bytes in 8,238 blocks +==24827== total heap usage: 45,968 allocs, 37,730 frees, 1,338,333,322 bytes allocated +==24827== +==24827== LEAK SUMMARY: +==24827== definitely lost: 0 bytes in 0 blocks +==24827== indirectly lost: 0 bytes in 0 blocks +==24827== possibly lost: 0 bytes in 0 blocks +==24827== still reachable: 24 bytes in 2 blocks +==24827== suppressed: 617,878 bytes in 8,236 blocks +==24827== Reachable blocks (those to which a pointer was found) are not shown. +==24827== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24827== +==24827== For lists of detected and suppressed errors, rerun with: -s +==24827== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestAbstractPurkinjeCellFactory_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAbstractPurkinjeCellFactory_valgrind.txt new file mode 100644 index 000000000..0a642c1d7 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAbstractPurkinjeCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==43412== Memcheck, a memory error detector +==43412== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43412== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43412== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestAbstractPurkinjeCellFactory -malloc_debug -malloc_dump -memory_info +==43412== Parent PID: 23903 +==43412== +==43412== +==43412== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43412== Open file descriptor 12: +==43412== at 0xA50C07D: pipe (pipe.c:29) +==43412== by 0x1432407D: ??? +==43412== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43412== by 0xBC07418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43412== by 0xBBA0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43412== by 0xA897D38: PetscInitialize (pinit.c:924) +==43412== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43412== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43412== by 0x11B060: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43412== by 0x11664D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43412== by 0x118D6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43412== by 0x118C0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43412== by 0x1192A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43412== by 0x114A75: main (TestAbstractPurkinjeCellFactory.cpp:19) +==43412== +==43412== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43412== at 0xA510A1C: __open_nocancel (open64_nocancel.c:39) +==43412== by 0xA494BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43412== by 0x9E2F822: ??? +==43412== by 0x9E2F96F: ??? +==43412== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43412== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43412== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43412== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43412== by 0xBC07418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43412== by 0xBBA0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43412== by 0xA897D38: PetscInitialize (pinit.c:924) +==43412== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43412== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43412== by 0x11B060: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43412== by 0x11664D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43412== by 0x118D6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43412== by 0x118C0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43412== by 0x1192A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43412== by 0x114A75: main (TestAbstractPurkinjeCellFactory.cpp:19) +==43412== +==43412== Open file descriptor 115: +==43412== +==43412== +==43412== Open file descriptor 112: +==43412== +==43412== +==43412== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractPurkinjeCellFactory_valgrind.txt +==43412== +==43412== +==43412== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43412== +==43412== +==43412== +==43412== HEAP SUMMARY: +==43412== in use at exit: 618,334 bytes in 8,238 blocks +==43412== total heap usage: 60,033 allocs, 51,795 frees, 1,339,347,977 bytes allocated +==43412== +==43412== LEAK SUMMARY: +==43412== definitely lost: 0 bytes in 0 blocks +==43412== indirectly lost: 0 bytes in 0 blocks +==43412== possibly lost: 0 bytes in 0 blocks +==43412== still reachable: 24 bytes in 2 blocks +==43412== suppressed: 618,310 bytes in 8,236 blocks +==43412== Reachable blocks (those to which a pointer was found) are not shown. +==43412== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43412== +==43412== For lists of detected and suppressed errors, rerun with: -s +==43412== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestAcinarUnitModels_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAcinarUnitModels_valgrind.txt new file mode 100644 index 000000000..6a6e311ff --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAcinarUnitModels_valgrind.txt @@ -0,0 +1,36 @@ +==40947== Memcheck, a memory error detector +==40947== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40947== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40947== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAcinarUnitModels -malloc_debug -malloc_dump -memory_info +==40947== Parent PID: 23903 +==40947== +==40947== +==40947== FILE DESCRIPTORS: 7 open (3 std) at exit. +==40947== Open file descriptor 115: +==40947== +==40947== +==40947== Open file descriptor 112: +==40947== +==40947== +==40947== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAcinarUnitModels_valgrind.txt +==40947== +==40947== +==40947== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40947== +==40947== +==40947== +==40947== HEAP SUMMARY: +==40947== in use at exit: 24 bytes in 2 blocks +==40947== total heap usage: 56,753 allocs, 56,751 frees, 1,351,562 bytes allocated +==40947== +==40947== LEAK SUMMARY: +==40947== definitely lost: 0 bytes in 0 blocks +==40947== indirectly lost: 0 bytes in 0 blocks +==40947== possibly lost: 0 bytes in 0 blocks +==40947== still reachable: 24 bytes in 2 blocks +==40947== suppressed: 0 bytes in 0 blocks +==40947== Reachable blocks (those to which a pointer was found) are not shown. +==40947== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40947== +==40947== For lists of detected and suppressed errors, rerun with: -s +==40947== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-07_08-54-51/TestAirwayBranch_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAirwayBranch_valgrind.txt new file mode 100644 index 000000000..54197d332 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAirwayBranch_valgrind.txt @@ -0,0 +1,36 @@ +==40866== Memcheck, a memory error detector +==40866== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40866== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40866== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayBranch -malloc_debug -malloc_dump -memory_info +==40866== Parent PID: 23903 +==40866== +==40866== +==40866== FILE DESCRIPTORS: 7 open (3 std) at exit. +==40866== Open file descriptor 115: +==40866== +==40866== +==40866== Open file descriptor 112: +==40866== +==40866== +==40866== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayBranch_valgrind.txt +==40866== +==40866== +==40866== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40866== +==40866== +==40866== +==40866== HEAP SUMMARY: +==40866== in use at exit: 24 bytes in 2 blocks +==40866== total heap usage: 7,276 allocs, 7,274 frees, 1,027,073 bytes allocated +==40866== +==40866== LEAK SUMMARY: +==40866== definitely lost: 0 bytes in 0 blocks +==40866== indirectly lost: 0 bytes in 0 blocks +==40866== possibly lost: 0 bytes in 0 blocks +==40866== still reachable: 24 bytes in 2 blocks +==40866== suppressed: 0 bytes in 0 blocks +==40866== Reachable blocks (those to which a pointer was found) are not shown. +==40866== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40866== +==40866== For lists of detected and suppressed errors, rerun with: -s +==40866== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-07_08-54-51/TestAirwayGeneration_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAirwayGeneration_valgrind.txt new file mode 100644 index 000000000..37b93e554 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAirwayGeneration_valgrind.txt @@ -0,0 +1,36 @@ +==40914== Memcheck, a memory error detector +==40914== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40914== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40914== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayGeneration -malloc_debug -malloc_dump -memory_info +==40914== Parent PID: 23903 +==40914== +==40914== +==40914== FILE DESCRIPTORS: 7 open (3 std) at exit. +==40914== Open file descriptor 115: +==40914== +==40914== +==40914== Open file descriptor 112: +==40914== +==40914== +==40914== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayGeneration_valgrind.txt +==40914== +==40914== +==40914== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40914== +==40914== +==40914== +==40914== HEAP SUMMARY: +==40914== in use at exit: 24 bytes in 2 blocks +==40914== total heap usage: 7,378 allocs, 7,376 frees, 939,180 bytes allocated +==40914== +==40914== LEAK SUMMARY: +==40914== definitely lost: 0 bytes in 0 blocks +==40914== indirectly lost: 0 bytes in 0 blocks +==40914== possibly lost: 0 bytes in 0 blocks +==40914== still reachable: 24 bytes in 2 blocks +==40914== suppressed: 0 bytes in 0 blocks +==40914== Reachable blocks (those to which a pointer was found) are not shown. +==40914== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40914== +==40914== For lists of detected and suppressed errors, rerun with: -s +==40914== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-07_08-54-51/TestAirwayGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAirwayGenerator_valgrind.txt new file mode 100644 index 000000000..dd5be8395 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAirwayGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==40915== Memcheck, a memory error detector +==40915== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40915== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40915== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayGenerator -malloc_debug -malloc_dump -memory_info +==40915== Parent PID: 23903 +==40915== +==40915== +==40915== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40915== Open file descriptor 12: +==40915== at 0x6BD107D: pipe (pipe.c:29) +==40915== by 0x107A407D: ??? +==40915== by 0xBAC94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40915== by 0x5ED6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40915== by 0x5E6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40915== by 0x4B43D38: PetscInitialize (pinit.c:924) +==40915== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40915== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40915== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40915== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40915== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40915== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40915== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40915== by 0x111D35: main (TestAirwayGenerator.cpp:19) +==40915== +==40915== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40915== at 0x6BD5A1C: __open_nocancel (open64_nocancel.c:39) +==40915== by 0x6B59BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40915== by 0x5DD2822: ??? +==40915== by 0x5DD296F: ??? +==40915== by 0xBB6E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40915== by 0xBB6E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40915== by 0xBB24922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40915== by 0xBAC92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40915== by 0x5ED6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40915== by 0x5E6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40915== by 0x4B43D38: PetscInitialize (pinit.c:924) +==40915== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40915== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40915== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40915== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40915== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40915== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40915== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40915== by 0x111D35: main (TestAirwayGenerator.cpp:19) +==40915== +==40915== Open file descriptor 115: +==40915== +==40915== +==40915== Open file descriptor 112: +==40915== +==40915== +==40915== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayGenerator_valgrind.txt +==40915== +==40915== +==40915== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40915== +==40915== +==40915== +==40915== HEAP SUMMARY: +==40915== in use at exit: 618,318 bytes in 8,238 blocks +==40915== total heap usage: 627,254 allocs, 619,016 frees, 1,787,062,573 bytes allocated +==40915== +==40915== LEAK SUMMARY: +==40915== definitely lost: 0 bytes in 0 blocks +==40915== indirectly lost: 0 bytes in 0 blocks +==40915== possibly lost: 0 bytes in 0 blocks +==40915== still reachable: 24 bytes in 2 blocks +==40915== suppressed: 618,294 bytes in 8,236 blocks +==40915== Reachable blocks (those to which a pointer was found) are not shown. +==40915== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40915== +==40915== For lists of detected and suppressed errors, rerun with: -s +==40915== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestAirwayPropertiesCalculator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAirwayPropertiesCalculator_valgrind.txt new file mode 100644 index 000000000..4c58620a0 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAirwayPropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==40867== Memcheck, a memory error detector +==40867== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40867== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40867== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayPropertiesCalculator -malloc_debug -malloc_dump -memory_info +==40867== Parent PID: 23903 +==40867== +==40867== +==40867== FILE DESCRIPTORS: 7 open (3 std) at exit. +==40867== Open file descriptor 115: +==40867== +==40867== +==40867== Open file descriptor 112: +==40867== +==40867== +==40867== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayPropertiesCalculator_valgrind.txt +==40867== +==40867== +==40867== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40867== +==40867== +==40867== +==40867== HEAP SUMMARY: +==40867== in use at exit: 24 bytes in 2 blocks +==40867== total heap usage: 6,941,070 allocs, 6,941,068 frees, 279,826,148 bytes allocated +==40867== +==40867== LEAK SUMMARY: +==40867== definitely lost: 0 bytes in 0 blocks +==40867== indirectly lost: 0 bytes in 0 blocks +==40867== possibly lost: 0 bytes in 0 blocks +==40867== still reachable: 24 bytes in 2 blocks +==40867== suppressed: 0 bytes in 0 blocks +==40867== Reachable blocks (those to which a pointer was found) are not shown. +==40867== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40867== +==40867== For lists of detected and suppressed errors, rerun with: -s +==40867== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-07_08-54-51/TestAirwayRemesher_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAirwayRemesher_valgrind.txt new file mode 100644 index 000000000..c7bf2b6d3 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAirwayRemesher_valgrind.txt @@ -0,0 +1,73 @@ +==40925== Memcheck, a memory error detector +==40925== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40925== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40925== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayRemesher -malloc_debug -malloc_dump -memory_info +==40925== Parent PID: 23903 +==40925== +==40925== +==40925== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40925== Open file descriptor 12: +==40925== at 0x822907D: pipe (pipe.c:29) +==40925== by 0x107A407D: ??? +==40925== by 0xBFCD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40925== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40925== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40925== by 0x679ED38: PetscInitialize (pinit.c:924) +==40925== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40925== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40925== by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40925== by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40925== by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40925== by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40925== by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40925== by 0x114955: main (TestAirwayRemesher.cpp:18) +==40925== +==40925== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40925== at 0x822DA1C: __open_nocancel (open64_nocancel.c:39) +==40925== by 0x81B1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40925== by 0x7A2D822: ??? +==40925== by 0x7A2D96F: ??? +==40925== by 0xC0726DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40925== by 0xC072938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40925== by 0xC028922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40925== by 0xBFCD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40925== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40925== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40925== by 0x679ED38: PetscInitialize (pinit.c:924) +==40925== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40925== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40925== by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40925== by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40925== by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40925== by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40925== by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40925== by 0x114955: main (TestAirwayRemesher.cpp:18) +==40925== +==40925== Open file descriptor 115: +==40925== +==40925== +==40925== Open file descriptor 112: +==40925== +==40925== +==40925== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayRemesher_valgrind.txt +==40925== +==40925== +==40925== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40925== +==40925== +==40925== +==40925== HEAP SUMMARY: +==40925== in use at exit: 618,247 bytes in 8,234 blocks +==40925== total heap usage: 11,597,068 allocs, 11,588,834 frees, 1,797,523,975 bytes allocated +==40925== +==40925== LEAK SUMMARY: +==40925== definitely lost: 0 bytes in 0 blocks +==40925== indirectly lost: 0 bytes in 0 blocks +==40925== possibly lost: 0 bytes in 0 blocks +==40925== still reachable: 24 bytes in 2 blocks +==40925== suppressed: 618,223 bytes in 8,232 blocks +==40925== Reachable blocks (those to which a pointer was found) are not shown. +==40925== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40925== +==40925== For lists of detected and suppressed errors, rerun with: -s +==40925== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-07_08-54-51/TestAirwayTreeWalker_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAirwayTreeWalker_valgrind.txt new file mode 100644 index 000000000..f8885b53e --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAirwayTreeWalker_valgrind.txt @@ -0,0 +1,36 @@ +==40868== Memcheck, a memory error detector +==40868== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40868== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40868== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayTreeWalker -malloc_debug -malloc_dump -memory_info +==40868== Parent PID: 23903 +==40868== +==40868== +==40868== FILE DESCRIPTORS: 7 open (3 std) at exit. +==40868== Open file descriptor 115: +==40868== +==40868== +==40868== Open file descriptor 112: +==40868== +==40868== +==40868== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayTreeWalker_valgrind.txt +==40868== +==40868== +==40868== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40868== +==40868== +==40868== +==40868== HEAP SUMMARY: +==40868== in use at exit: 24 bytes in 2 blocks +==40868== total heap usage: 7,161 allocs, 7,159 frees, 1,017,852 bytes allocated +==40868== +==40868== LEAK SUMMARY: +==40868== definitely lost: 0 bytes in 0 blocks +==40868== indirectly lost: 0 bytes in 0 blocks +==40868== possibly lost: 0 bytes in 0 blocks +==40868== still reachable: 24 bytes in 2 blocks +==40868== suppressed: 0 bytes in 0 blocks +==40868== Reachable blocks (those to which a pointer was found) are not shown. +==40868== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40868== +==40868== For lists of detected and suppressed errors, rerun with: -s +==40868== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-07_08-54-51/TestAirwayWallModels_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAirwayWallModels_valgrind.txt new file mode 100644 index 000000000..3a1e0537b --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAirwayWallModels_valgrind.txt @@ -0,0 +1,36 @@ +==40949== Memcheck, a memory error detector +==40949== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40949== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40949== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayWallModels -malloc_debug -malloc_dump -memory_info +==40949== Parent PID: 23903 +==40949== +==40949== +==40949== FILE DESCRIPTORS: 7 open (3 std) at exit. +==40949== Open file descriptor 115: +==40949== +==40949== +==40949== Open file descriptor 112: +==40949== +==40949== +==40949== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayWallModels_valgrind.txt +==40949== +==40949== +==40949== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40949== +==40949== +==40949== +==40949== HEAP SUMMARY: +==40949== in use at exit: 24 bytes in 2 blocks +==40949== total heap usage: 7,221 allocs, 7,219 frees, 1,020,269 bytes allocated +==40949== +==40949== LEAK SUMMARY: +==40949== definitely lost: 0 bytes in 0 blocks +==40949== indirectly lost: 0 bytes in 0 blocks +==40949== possibly lost: 0 bytes in 0 blocks +==40949== still reachable: 24 bytes in 2 blocks +==40949== suppressed: 0 bytes in 0 blocks +==40949== Reachable blocks (those to which a pointer was found) are not shown. +==40949== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40949== +==40949== For lists of detected and suppressed errors, rerun with: -s +==40949== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-07_08-54-51/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt new file mode 100644 index 000000000..0d9f21967 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25756== Memcheck, a memory error detector +==25756== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25756== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25756== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==25756== Parent PID: 23903 +==25756== +==25756== +==25756== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25756== Open file descriptor 12: +==25756== at 0xEF9407D: pipe (pipe.c:29) +==25756== by 0x196AC07D: ??? +==25756== by 0x13C514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25756== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25756== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25756== by 0xD871D38: PetscInitialize (pinit.c:924) +==25756== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25756== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25756== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25756== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25756== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25756== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25756== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25756== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) +==25756== +==25756== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25756== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25756== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25756== by 0xD71D822: ??? +==25756== by 0xD71D96F: ??? +==25756== by 0x13CF66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25756== by 0x13CF6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25756== by 0x13CAC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25756== by 0x13C512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25756== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25756== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25756== by 0xD871D38: PetscInitialize (pinit.c:924) +==25756== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25756== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25756== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25756== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25756== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25756== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25756== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25756== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) +==25756== +==25756== Open file descriptor 115: +==25756== +==25756== +==25756== Open file descriptor 112: +==25756== +==25756== +==25756== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt +==25756== +==25756== +==25756== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25756== +==25756== +==25756== +==25756== HEAP SUMMARY: +==25756== in use at exit: 618,318 bytes in 8,238 blocks +==25756== total heap usage: 166,111 allocs, 157,873 frees, 1,349,640,315 bytes allocated +==25756== +==25756== LEAK SUMMARY: +==25756== definitely lost: 0 bytes in 0 blocks +==25756== indirectly lost: 0 bytes in 0 blocks +==25756== possibly lost: 0 bytes in 0 blocks +==25756== still reachable: 24 bytes in 2 blocks +==25756== suppressed: 618,294 bytes in 8,236 blocks +==25756== Reachable blocks (those to which a pointer was found) are not shown. +==25756== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25756== +==25756== For lists of detected and suppressed errors, rerun with: -s +==25756== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestArchiveCell_valgrind.txt b/log-files/2024-09-07_08-54-51/TestArchiveCell_valgrind.txt new file mode 100644 index 000000000..24ba964fb --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestArchiveCell_valgrind.txt @@ -0,0 +1,73 @@ +==25237== Memcheck, a memory error detector +==25237== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25237== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25237== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestArchiveCell -malloc_debug -malloc_dump -memory_info +==25237== Parent PID: 23903 +==25237== +==25237== +==25237== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25237== Open file descriptor 12: +==25237== at 0xED5007D: pipe (pipe.c:29) +==25237== by 0x196AC07D: ??? +==25237== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25237== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25237== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25237== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25237== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25237== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25237== by 0x1A4DB1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25237== by 0x19F1FF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25237== by 0x1A2140: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25237== by 0x1A203C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25237== by 0x1A264F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25237== by 0x19D9F5: main (TestArchiveCell.cpp:18) +==25237== +==25237== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25237== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25237== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25237== by 0xD4D9822: ??? +==25237== by 0xD4D996F: ??? +==25237== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25237== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25237== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25237== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25237== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25237== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25237== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25237== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25237== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25237== by 0x1A4DB1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25237== by 0x19F1FF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25237== by 0x1A2140: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25237== by 0x1A203C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25237== by 0x1A264F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25237== by 0x19D9F5: main (TestArchiveCell.cpp:18) +==25237== +==25237== Open file descriptor 115: +==25237== +==25237== +==25237== Open file descriptor 112: +==25237== +==25237== +==25237== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiveCell_valgrind.txt +==25237== +==25237== +==25237== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25237== +==25237== +==25237== +==25237== HEAP SUMMARY: +==25237== in use at exit: 618,414 bytes in 8,240 blocks +==25237== total heap usage: 53,934 allocs, 45,694 frees, 1,339,008,758 bytes allocated +==25237== +==25237== LEAK SUMMARY: +==25237== definitely lost: 0 bytes in 0 blocks +==25237== indirectly lost: 0 bytes in 0 blocks +==25237== possibly lost: 0 bytes in 0 blocks +==25237== still reachable: 120 bytes in 4 blocks +==25237== suppressed: 618,294 bytes in 8,236 blocks +==25237== Reachable blocks (those to which a pointer was found) are not shown. +==25237== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25237== +==25237== For lists of detected and suppressed errors, rerun with: -s +==25237== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestArchiveFormat_valgrind.txt b/log-files/2024-09-07_08-54-51/TestArchiveFormat_valgrind.txt new file mode 100644 index 000000000..ec211b6c7 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestArchiveFormat_valgrind.txt @@ -0,0 +1,73 @@ +==40373== Memcheck, a memory error detector +==40373== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40373== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40373== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestArchiveFormat -malloc_debug -malloc_dump -memory_info +==40373== Parent PID: 23903 +==40373== +==40373== +==40373== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40373== Open file descriptor 12: +==40373== at 0x125B207D: pipe (pipe.c:29) +==40373== by 0x1B36D07D: ??? +==40373== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40373== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40373== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40373== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40373== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40373== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40373== by 0x1C0D5D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40373== by 0x1BBA9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40373== by 0x1BE6BA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40373== by 0x1BE5B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40373== by 0x1BEBC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40373== by 0x1BA295: main (TestArchiveFormat.cpp:18) +==40373== +==40373== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40373== at 0x125B6A1C: __open_nocancel (open64_nocancel.c:39) +==40373== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40373== by 0x109F6822: ??? +==40373== by 0x109F696F: ??? +==40373== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40373== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40373== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40373== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40373== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40373== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40373== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40373== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40373== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40373== by 0x1C0D5D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40373== by 0x1BBA9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40373== by 0x1BE6BA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40373== by 0x1BE5B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40373== by 0x1BEBC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40373== by 0x1BA295: main (TestArchiveFormat.cpp:18) +==40373== +==40373== Open file descriptor 115: +==40373== +==40373== +==40373== Open file descriptor 112: +==40373== +==40373== +==40373== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiveFormat_valgrind.txt +==40373== +==40373== +==40373== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40373== +==40373== +==40373== +==40373== HEAP SUMMARY: +==40373== in use at exit: 618,414 bytes in 8,239 blocks +==40373== total heap usage: 137,701 allocs, 129,462 frees, 1,345,410,393 bytes allocated +==40373== +==40373== LEAK SUMMARY: +==40373== definitely lost: 0 bytes in 0 blocks +==40373== indirectly lost: 0 bytes in 0 blocks +==40373== possibly lost: 0 bytes in 0 blocks +==40373== still reachable: 104 bytes in 3 blocks +==40373== suppressed: 618,310 bytes in 8,236 blocks +==40373== Reachable blocks (those to which a pointer was found) are not shown. +==40373== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40373== +==40373== For lists of detected and suppressed errors, rerun with: -s +==40373== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestArchivingExtendedBidomain_valgrind.txt b/log-files/2024-09-07_08-54-51/TestArchivingExtendedBidomain_valgrind.txt new file mode 100644 index 000000000..11acd3db6 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestArchivingExtendedBidomain_valgrind.txt @@ -0,0 +1,73 @@ +==41109== Memcheck, a memory error detector +==41109== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41109== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41109== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestArchivingExtendedBidomain -malloc_debug -malloc_dump -memory_info +==41109== Parent PID: 23903 +==41109== +==41109== +==41109== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41109== Open file descriptor 12: +==41109== at 0xBD4907D: pipe (pipe.c:29) +==41109== by 0x1432407D: ??? +==41109== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41109== by 0xB639418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41109== by 0xB5D2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41109== by 0xA2C9D38: PetscInitialize (pinit.c:924) +==41109== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41109== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41109== by 0x12EE9E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41109== by 0x129BF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41109== by 0x12CABA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41109== by 0x12C9B5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41109== by 0x12CFC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41109== by 0x1283A5: main (TestArchivingExtendedBidomain.cpp:18) +==41109== +==41109== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41109== at 0xBD4DA1C: __open_nocancel (open64_nocancel.c:39) +==41109== by 0xBCD1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41109== by 0xA173822: ??? +==41109== by 0xA17396F: ??? +==41109== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41109== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41109== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41109== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41109== by 0xB639418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41109== by 0xB5D2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41109== by 0xA2C9D38: PetscInitialize (pinit.c:924) +==41109== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41109== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41109== by 0x12EE9E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41109== by 0x129BF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41109== by 0x12CABA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41109== by 0x12C9B5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41109== by 0x12CFC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41109== by 0x1283A5: main (TestArchivingExtendedBidomain.cpp:18) +==41109== +==41109== Open file descriptor 115: +==41109== +==41109== +==41109== Open file descriptor 112: +==41109== +==41109== +==41109== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchivingExtendedBidomain_valgrind.txt +==41109== +==41109== +==41109== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41109== +==41109== +==41109== +==41109== HEAP SUMMARY: +==41109== in use at exit: 618,743 bytes in 8,244 blocks +==41109== total heap usage: 352,177 allocs, 343,933 frees, 1,440,037,513 bytes allocated +==41109== +==41109== LEAK SUMMARY: +==41109== definitely lost: 0 bytes in 0 blocks +==41109== indirectly lost: 0 bytes in 0 blocks +==41109== possibly lost: 0 bytes in 0 blocks +==41109== still reachable: 24 bytes in 2 blocks +==41109== suppressed: 618,719 bytes in 8,242 blocks +==41109== Reachable blocks (those to which a pointer was found) are not shown. +==41109== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41109== +==41109== For lists of detected and suppressed errors, rerun with: -s +==41109== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 51 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestArchivingHelperClasses_valgrind.txt b/log-files/2024-09-07_08-54-51/TestArchivingHelperClasses_valgrind.txt new file mode 100644 index 000000000..c0f342394 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestArchivingHelperClasses_valgrind.txt @@ -0,0 +1,73 @@ +==23904== Memcheck, a memory error detector +==23904== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23904== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23904== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestArchivingHelperClasses -malloc_debug -malloc_dump -memory_info +==23904== Parent PID: 23903 +==23904== +==23904== +==23904== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23904== Open file descriptor 12: +==23904== at 0x4CF607D: pipe (pipe.c:29) +==23904== by 0xAEA507D: ??? +==23904== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23904== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23904== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23904== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23904== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23904== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23904== by 0x11F878: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23904== by 0x11ABDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23904== by 0x11D596: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23904== by 0x11D436: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23904== by 0x11DACD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23904== by 0x119005: main (TestArchivingHelperClasses.cpp:19) +==23904== +==23904== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23904== at 0x4CFAA1C: __open_nocancel (open64_nocancel.c:39) +==23904== by 0x4C7EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23904== by 0x4934822: ??? +==23904== by 0x493496F: ??? +==23904== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23904== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23904== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23904== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23904== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23904== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23904== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23904== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23904== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23904== by 0x11F878: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23904== by 0x11ABDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23904== by 0x11D596: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23904== by 0x11D436: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23904== by 0x11DACD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23904== by 0x119005: main (TestArchivingHelperClasses.cpp:19) +==23904== +==23904== Open file descriptor 115: +==23904== +==23904== +==23904== Open file descriptor 112: +==23904== +==23904== +==23904== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchivingHelperClasses_valgrind.txt +==23904== +==23904== +==23904== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23904== +==23904== +==23904== +==23904== HEAP SUMMARY: +==23904== in use at exit: 617,838 bytes in 8,238 blocks +==23904== total heap usage: 45,930 allocs, 37,692 frees, 1,338,444,791 bytes allocated +==23904== +==23904== LEAK SUMMARY: +==23904== definitely lost: 0 bytes in 0 blocks +==23904== indirectly lost: 0 bytes in 0 blocks +==23904== possibly lost: 0 bytes in 0 blocks +==23904== still reachable: 24 bytes in 2 blocks +==23904== suppressed: 617,814 bytes in 8,236 blocks +==23904== Reachable blocks (those to which a pointer was found) are not shown. +==23904== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23904== +==23904== For lists of detected and suppressed errors, rerun with: -s +==23904== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestArchiving_valgrind.txt b/log-files/2024-09-07_08-54-51/TestArchiving_valgrind.txt new file mode 100644 index 000000000..e7788167b --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestArchiving_valgrind.txt @@ -0,0 +1,73 @@ +==23905== Memcheck, a memory error detector +==23905== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23905== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23905== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestArchiving -malloc_debug -malloc_dump -memory_info +==23905== Parent PID: 23903 +==23905== +==23905== +==23905== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23905== Open file descriptor 12: +==23905== at 0x61AB07D: pipe (pipe.c:29) +==23905== by 0xAEA507D: ??? +==23905== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23905== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23905== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23905== by 0x4A88D38: PetscInitialize (pinit.c:924) +==23905== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23905== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23905== by 0x12FB25: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23905== by 0x128E5F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23905== by 0x12CB36: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23905== by 0x12CA31: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23905== by 0x12D045: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23905== by 0x127655: main (TestArchiving.cpp:18) +==23905== +==23905== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23905== at 0x61AFA1C: __open_nocancel (open64_nocancel.c:39) +==23905== by 0x6133BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23905== by 0x4934822: ??? +==23905== by 0x493496F: ??? +==23905== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23905== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23905== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23905== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23905== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23905== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23905== by 0x4A88D38: PetscInitialize (pinit.c:924) +==23905== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23905== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23905== by 0x12FB25: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23905== by 0x128E5F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23905== by 0x12CB36: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23905== by 0x12CA31: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23905== by 0x12D045: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23905== by 0x127655: main (TestArchiving.cpp:18) +==23905== +==23905== Open file descriptor 115: +==23905== +==23905== +==23905== Open file descriptor 112: +==23905== +==23905== +==23905== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiving_valgrind.txt +==23905== +==23905== +==23905== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23905== +==23905== +==23905== +==23905== HEAP SUMMARY: +==23905== in use at exit: 617,838 bytes in 8,238 blocks +==23905== total heap usage: 45,506 allocs, 37,268 frees, 1,338,352,651 bytes allocated +==23905== +==23905== LEAK SUMMARY: +==23905== definitely lost: 0 bytes in 0 blocks +==23905== indirectly lost: 0 bytes in 0 blocks +==23905== possibly lost: 0 bytes in 0 blocks +==23905== still reachable: 24 bytes in 2 blocks +==23905== suppressed: 617,814 bytes in 8,236 blocks +==23905== Reachable blocks (those to which a pointer was found) are not shown. +==23905== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23905== +==23905== For lists of detected and suppressed errors, rerun with: -s +==23905== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestBackwardEulerIvpOdeSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestBackwardEulerIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..4d7619ca0 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestBackwardEulerIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24847== Memcheck, a memory error detector +==24847== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24847== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24847== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestBackwardEulerIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24847== Parent PID: 23903 +==24847== +==24847== +==24847== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24847== Open file descriptor 12: +==24847== at 0x503907D: pipe (pipe.c:29) +==24847== by 0xB1E607D: ??? +==24847== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24847== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24847== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24847== by 0x5308D38: PetscInitialize (pinit.c:924) +==24847== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24847== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24847== by 0x125F28: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24847== by 0x120619: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24847== by 0x122DCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24847== by 0x122CCA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24847== by 0x1232DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24847== by 0x11DEE5: main (TestBackwardEulerIvpOdeSolver.cpp:18) +==24847== +==24847== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24847== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24847== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24847== by 0x4B76822: ??? +==24847== by 0x4B7696F: ??? +==24847== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24847== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24847== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24847== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24847== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24847== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24847== by 0x5308D38: PetscInitialize (pinit.c:924) +==24847== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24847== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24847== by 0x125F28: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24847== by 0x120619: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24847== by 0x122DCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24847== by 0x122CCA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24847== by 0x1232DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24847== by 0x11DEE5: main (TestBackwardEulerIvpOdeSolver.cpp:18) +==24847== +==24847== Open file descriptor 115: +==24847== +==24847== +==24847== Open file descriptor 112: +==24847== +==24847== +==24847== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBackwardEulerIvpOdeSolver_valgrind.txt +==24847== +==24847== +==24847== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24847== +==24847== +==24847== +==24847== HEAP SUMMARY: +==24847== in use at exit: 617,902 bytes in 8,238 blocks +==24847== total heap usage: 386,054 allocs, 377,816 frees, 1,344,036,191 bytes allocated +==24847== +==24847== LEAK SUMMARY: +==24847== definitely lost: 0 bytes in 0 blocks +==24847== indirectly lost: 0 bytes in 0 blocks +==24847== possibly lost: 0 bytes in 0 blocks +==24847== still reachable: 24 bytes in 2 blocks +==24847== suppressed: 617,878 bytes in 8,236 blocks +==24847== Reachable blocks (those to which a pointer was found) are not shown. +==24847== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24847== +==24847== For lists of detected and suppressed errors, rerun with: -s +==24847== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt b/log-files/2024-09-07_08-54-51/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt new file mode 100644 index 000000000..d365c4b94 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt @@ -0,0 +1,73 @@ +==40993== Memcheck, a memory error detector +==40993== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40993== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40993== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBenchmarkPreconditionersForMeshIndependence -malloc_debug -malloc_dump -memory_info +==40993== Parent PID: 23903 +==40993== +==40993== +==40993== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40993== Open file descriptor 12: +==40993== at 0xBCEC07D: pipe (pipe.c:29) +==40993== by 0x1432407D: ??? +==40993== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40993== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40993== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40993== by 0xA160D38: PetscInitialize (pinit.c:924) +==40993== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40993== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40993== by 0x11D9C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40993== by 0x1189AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40993== by 0x11B52E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40993== by 0x11B3CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40993== by 0x11BA65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40993== by 0x116DD5: main (TestBenchmarkPreconditionersForMeshIndependence.cpp:19) +==40993== +==40993== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40993== at 0xBCF0A1C: __open_nocancel (open64_nocancel.c:39) +==40993== by 0xBC74BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40993== by 0xB3EF822: ??? +==40993== by 0xB3EF96F: ??? +==40993== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40993== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40993== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40993== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40993== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40993== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40993== by 0xA160D38: PetscInitialize (pinit.c:924) +==40993== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40993== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40993== by 0x11D9C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40993== by 0x1189AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40993== by 0x11B52E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40993== by 0x11B3CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40993== by 0x11BA65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40993== by 0x116DD5: main (TestBenchmarkPreconditionersForMeshIndependence.cpp:19) +==40993== +==40993== Open file descriptor 115: +==40993== +==40993== +==40993== Open file descriptor 112: +==40993== +==40993== +==40993== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt +==40993== +==40993== +==40993== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40993== +==40993== +==40993== +==40993== HEAP SUMMARY: +==40993== in use at exit: 618,759 bytes in 8,245 blocks +==40993== total heap usage: 466,127 allocs, 457,882 frees, 1,542,132,453 bytes allocated +==40993== +==40993== LEAK SUMMARY: +==40993== definitely lost: 0 bytes in 0 blocks +==40993== indirectly lost: 0 bytes in 0 blocks +==40993== possibly lost: 0 bytes in 0 blocks +==40993== still reachable: 40 bytes in 3 blocks +==40993== suppressed: 618,719 bytes in 8,242 blocks +==40993== Reachable blocks (those to which a pointer was found) are not shown. +==40993== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40993== +==40993== For lists of detected and suppressed errors, rerun with: -s +==40993== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 51 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestBidomainDistributedMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestBidomainDistributedMesh_valgrind.txt new file mode 100644 index 000000000..c17a578bc --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestBidomainDistributedMesh_valgrind.txt @@ -0,0 +1,73 @@ +==41007== Memcheck, a memory error detector +==41007== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41007== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41007== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainDistributedMesh -malloc_debug -malloc_dump -memory_info +==41007== Parent PID: 23903 +==41007== +==41007== +==41007== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41007== Open file descriptor 12: +==41007== at 0xBC0507D: pipe (pipe.c:29) +==41007== by 0x1432407D: ??? +==41007== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41007== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41007== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41007== by 0xA160D38: PetscInitialize (pinit.c:924) +==41007== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41007== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41007== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41007== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41007== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41007== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41007== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41007== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) +==41007== +==41007== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41007== at 0xBC09A1C: __open_nocancel (open64_nocancel.c:39) +==41007== by 0xBB8DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41007== by 0xB3EF822: ??? +==41007== by 0xB3EF96F: ??? +==41007== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41007== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41007== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41007== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41007== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41007== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41007== by 0xA160D38: PetscInitialize (pinit.c:924) +==41007== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41007== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41007== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41007== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41007== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41007== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41007== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41007== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) +==41007== +==41007== Open file descriptor 115: +==41007== +==41007== +==41007== Open file descriptor 112: +==41007== +==41007== +==41007== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainDistributedMesh_valgrind.txt +==41007== +==41007== +==41007== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41007== +==41007== +==41007== +==41007== HEAP SUMMARY: +==41007== in use at exit: 618,814 bytes in 8,248 blocks +==41007== total heap usage: 428,256 allocs, 420,008 frees, 1,437,394,761 bytes allocated +==41007== +==41007== LEAK SUMMARY: +==41007== definitely lost: 0 bytes in 0 blocks +==41007== indirectly lost: 0 bytes in 0 blocks +==41007== possibly lost: 0 bytes in 0 blocks +==41007== still reachable: 24 bytes in 2 blocks +==41007== suppressed: 618,790 bytes in 8,246 blocks +==41007== Reachable blocks (those to which a pointer was found) are not shown. +==41007== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41007== +==41007== For lists of detected and suppressed errors, rerun with: -s +==41007== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 55 from 38) diff --git a/log-files/2024-09-07_08-54-51/TestBidomainProblem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestBidomainProblem_valgrind.txt new file mode 100644 index 000000000..7a7d508cf --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41083== Memcheck, a memory error detector +==41083== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41083== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41083== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainProblem -malloc_debug -malloc_dump -memory_info +==41083== Parent PID: 23903 +==41083== +==41083== +==41083== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41083== Open file descriptor 12: +==41083== at 0xC0E807D: pipe (pipe.c:29) +==41083== by 0x1432407D: ??? +==41083== by 0xFADE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41083== by 0xB9D6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41083== by 0xB96FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41083== by 0xA666D38: PetscInitialize (pinit.c:924) +==41083== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41083== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41083== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41083== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41083== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41083== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41083== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41083== by 0x138285: main (TestBidomainProblem.cpp:19) +==41083== +==41083== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41083== at 0xC0ECA1C: __open_nocancel (open64_nocancel.c:39) +==41083== by 0xC070BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41083== by 0xA510822: ??? +==41083== by 0xA51096F: ??? +==41083== by 0xFB836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41083== by 0xFB83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41083== by 0xFB39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41083== by 0xFADE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41083== by 0xB9D6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41083== by 0xB96FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41083== by 0xA666D38: PetscInitialize (pinit.c:924) +==41083== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41083== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41083== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41083== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41083== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41083== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41083== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41083== by 0x138285: main (TestBidomainProblem.cpp:19) +==41083== +==41083== Open file descriptor 115: +==41083== +==41083== +==41083== Open file descriptor 112: +==41083== +==41083== +==41083== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainProblem_valgrind.txt +==41083== +==41083== +==41083== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41083== +==41083== +==41083== +==41083== HEAP SUMMARY: +==41083== in use at exit: 618,814 bytes in 8,248 blocks +==41083== total heap usage: 584,918 allocs, 576,670 frees, 1,548,984,468 bytes allocated +==41083== +==41083== LEAK SUMMARY: +==41083== definitely lost: 0 bytes in 0 blocks +==41083== indirectly lost: 0 bytes in 0 blocks +==41083== possibly lost: 0 bytes in 0 blocks +==41083== still reachable: 24 bytes in 2 blocks +==41083== suppressed: 618,790 bytes in 8,246 blocks +==41083== Reachable blocks (those to which a pointer was found) are not shown. +==41083== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41083== +==41083== For lists of detected and suppressed errors, rerun with: -s +==41083== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 103 from 38) diff --git a/log-files/2024-09-07_08-54-51/TestBidomainTissue_valgrind.txt b/log-files/2024-09-07_08-54-51/TestBidomainTissue_valgrind.txt new file mode 100644 index 000000000..143ec78f6 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestBidomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==41014== Memcheck, a memory error detector +==41014== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41014== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41014== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainTissue -malloc_debug -malloc_dump -memory_info +==41014== Parent PID: 23903 +==41014== +==41014== +==41014== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41014== Open file descriptor 12: +==41014== at 0xBB9F07D: pipe (pipe.c:29) +==41014== by 0x1432407D: ??? +==41014== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41014== by 0xBF1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41014== by 0xBEB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41014== by 0xA254D38: PetscInitialize (pinit.c:924) +==41014== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41014== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41014== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41014== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41014== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41014== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41014== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41014== by 0x1326C5: main (TestBidomainTissue.cpp:18) +==41014== +==41014== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41014== at 0xBBA3A1C: __open_nocancel (open64_nocancel.c:39) +==41014== by 0xBB27BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41014== by 0xA100822: ??? +==41014== by 0xA10096F: ??? +==41014== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41014== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41014== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41014== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41014== by 0xBF1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41014== by 0xBEB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41014== by 0xA254D38: PetscInitialize (pinit.c:924) +==41014== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41014== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41014== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41014== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41014== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41014== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41014== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41014== by 0x1326C5: main (TestBidomainTissue.cpp:18) +==41014== +==41014== Open file descriptor 115: +==41014== +==41014== +==41014== Open file descriptor 112: +==41014== +==41014== +==41014== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainTissue_valgrind.txt +==41014== +==41014== +==41014== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41014== +==41014== +==41014== +==41014== HEAP SUMMARY: +==41014== in use at exit: 618,334 bytes in 8,238 blocks +==41014== total heap usage: 192,058 allocs, 183,820 frees, 1,381,064,078 bytes allocated +==41014== +==41014== LEAK SUMMARY: +==41014== definitely lost: 0 bytes in 0 blocks +==41014== indirectly lost: 0 bytes in 0 blocks +==41014== possibly lost: 0 bytes in 0 blocks +==41014== still reachable: 24 bytes in 2 blocks +==41014== suppressed: 618,310 bytes in 8,236 blocks +==41014== Reachable blocks (those to which a pointer was found) are not shown. +==41014== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41014== +==41014== For lists of detected and suppressed errors, rerun with: -s +==41014== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestBidomainWithBathProblem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestBidomainWithBathProblem_valgrind.txt new file mode 100644 index 000000000..03688c8ca --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestBidomainWithBathProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41084== Memcheck, a memory error detector +==41084== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41084== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41084== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainWithBathProblem -malloc_debug -malloc_dump -memory_info +==41084== Parent PID: 23903 +==41084== +==41084== +==41084== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41084== Open file descriptor 12: +==41084== at 0xAC6307D: pipe (pipe.c:29) +==41084== by 0x1432407D: ??? +==41084== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41084== by 0xC35E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41084== by 0xC2F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41084== by 0xAFEED38: PetscInitialize (pinit.c:924) +==41084== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41084== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41084== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41084== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41084== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41084== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41084== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41084== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) +==41084== +==41084== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41084== at 0xAC67A1C: __open_nocancel (open64_nocancel.c:39) +==41084== by 0xABEBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41084== by 0xA49D822: ??? +==41084== by 0xA49D96F: ??? +==41084== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41084== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41084== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41084== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41084== by 0xC35E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41084== by 0xC2F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41084== by 0xAFEED38: PetscInitialize (pinit.c:924) +==41084== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41084== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41084== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41084== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41084== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41084== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41084== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41084== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) +==41084== +==41084== Open file descriptor 115: +==41084== +==41084== +==41084== Open file descriptor 112: +==41084== +==41084== +==41084== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainWithBathProblem_valgrind.txt +==41084== +==41084== +==41084== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41084== +==41084== +==41084== +==41084== HEAP SUMMARY: +==41084== in use at exit: 618,743 bytes in 8,244 blocks +==41084== total heap usage: 1,394,262 allocs, 1,386,018 frees, 1,987,571,259 bytes allocated +==41084== +==41084== LEAK SUMMARY: +==41084== definitely lost: 0 bytes in 0 blocks +==41084== indirectly lost: 0 bytes in 0 blocks +==41084== possibly lost: 0 bytes in 0 blocks +==41084== still reachable: 24 bytes in 2 blocks +==41084== suppressed: 618,719 bytes in 8,242 blocks +==41084== Reachable blocks (those to which a pointer was found) are not shown. +==41084== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41084== +==41084== For lists of detected and suppressed errors, rerun with: -s +==41084== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 69 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestBidomainWithSvi_valgrind.txt b/log-files/2024-09-07_08-54-51/TestBidomainWithSvi_valgrind.txt new file mode 100644 index 000000000..8e0b8d450 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestBidomainWithSvi_valgrind.txt @@ -0,0 +1,73 @@ +==41106== Memcheck, a memory error detector +==41106== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41106== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41106== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainWithSvi -malloc_debug -malloc_dump -memory_info +==41106== Parent PID: 23903 +==41106== +==41106== +==41106== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41106== Open file descriptor 12: +==41106== at 0xA7DF07D: pipe (pipe.c:29) +==41106== by 0x1432407D: ??? +==41106== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41106== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41106== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41106== by 0xAB68D38: PetscInitialize (pinit.c:924) +==41106== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41106== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41106== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41106== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41106== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41106== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41106== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41106== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) +==41106== +==41106== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41106== at 0xA7E3A1C: __open_nocancel (open64_nocancel.c:39) +==41106== by 0xA767BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41106== by 0xA100822: ??? +==41106== by 0xA10096F: ??? +==41106== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41106== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41106== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41106== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41106== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41106== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41106== by 0xAB68D38: PetscInitialize (pinit.c:924) +==41106== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41106== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41106== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41106== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41106== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41106== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41106== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41106== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) +==41106== +==41106== Open file descriptor 115: +==41106== +==41106== +==41106== Open file descriptor 112: +==41106== +==41106== +==41106== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainWithSvi_valgrind.txt +==41106== +==41106== +==41106== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41106== +==41106== +==41106== +==41106== HEAP SUMMARY: +==41106== in use at exit: 618,743 bytes in 8,244 blocks +==41106== total heap usage: 3,540,034 allocs, 3,531,790 frees, 2,046,652,474 bytes allocated +==41106== +==41106== LEAK SUMMARY: +==41106== definitely lost: 0 bytes in 0 blocks +==41106== indirectly lost: 0 bytes in 0 blocks +==41106== possibly lost: 0 bytes in 0 blocks +==41106== still reachable: 24 bytes in 2 blocks +==41106== suppressed: 618,719 bytes in 8,242 blocks +==41106== Reachable blocks (those to which a pointer was found) are not shown. +==41106== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41106== +==41106== For lists of detected and suppressed errors, rerun with: -s +==41106== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 72 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestBoundaryConditionsContainer_valgrind.txt b/log-files/2024-09-07_08-54-51/TestBoundaryConditionsContainer_valgrind.txt new file mode 100644 index 000000000..775dc665d --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestBoundaryConditionsContainer_valgrind.txt @@ -0,0 +1,73 @@ +==25071== Memcheck, a memory error detector +==25071== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25071== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25071== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestBoundaryConditionsContainer -malloc_debug -malloc_dump -memory_info +==25071== Parent PID: 23903 +==25071== +==25071== +==25071== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25071== Open file descriptor 12: +==25071== at 0x844207D: pipe (pipe.c:29) +==25071== by 0x104D507D: ??? +==25071== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25071== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25071== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25071== by 0x6B11D38: PetscInitialize (pinit.c:924) +==25071== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25071== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25071== by 0x13D842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25071== by 0x13868F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25071== by 0x13B1AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25071== by 0x13B0A6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25071== by 0x13B6B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25071== by 0x136E85: main (TestBoundaryConditionsContainer.cpp:18) +==25071== +==25071== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25071== at 0x8446A1C: __open_nocancel (open64_nocancel.c:39) +==25071== by 0x83CABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25071== by 0x69BD822: ??? +==25071== by 0x69BD96F: ??? +==25071== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25071== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25071== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25071== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25071== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25071== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25071== by 0x6B11D38: PetscInitialize (pinit.c:924) +==25071== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25071== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25071== by 0x13D842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25071== by 0x13868F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25071== by 0x13B1AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25071== by 0x13B0A6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25071== by 0x13B6B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25071== by 0x136E85: main (TestBoundaryConditionsContainer.cpp:18) +==25071== +==25071== Open file descriptor 115: +==25071== +==25071== +==25071== Open file descriptor 112: +==25071== +==25071== +==25071== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBoundaryConditionsContainer_valgrind.txt +==25071== +==25071== +==25071== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25071== +==25071== +==25071== +==25071== HEAP SUMMARY: +==25071== in use at exit: 618,254 bytes in 8,238 blocks +==25071== total heap usage: 54,304 allocs, 46,066 frees, 1,340,402,690 bytes allocated +==25071== +==25071== LEAK SUMMARY: +==25071== definitely lost: 0 bytes in 0 blocks +==25071== indirectly lost: 0 bytes in 0 blocks +==25071== possibly lost: 0 bytes in 0 blocks +==25071== still reachable: 24 bytes in 2 blocks +==25071== suppressed: 618,230 bytes in 8,236 blocks +==25071== Reachable blocks (those to which a pointer was found) are not shown. +==25071== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25071== +==25071== For lists of detected and suppressed errors, rerun with: -s +==25071== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestBuskeForces_valgrind.txt b/log-files/2024-09-07_08-54-51/TestBuskeForces_valgrind.txt new file mode 100644 index 000000000..8106f4416 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestBuskeForces_valgrind.txt @@ -0,0 +1,73 @@ +==25781== Memcheck, a memory error detector +==25781== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25781== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25781== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestBuskeForces -malloc_debug -malloc_dump -memory_info +==25781== Parent PID: 23903 +==25781== +==25781== +==25781== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25781== Open file descriptor 12: +==25781== at 0xF92407D: pipe (pipe.c:29) +==25781== by 0x196AD07D: ??? +==25781== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25781== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25781== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25781== by 0x10210D38: PetscInitialize (pinit.c:924) +==25781== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25781== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25781== by 0x1373C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25781== by 0x1302A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25781== by 0x132EDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25781== by 0x132DD7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25781== by 0x1333EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25781== by 0x12EAA5: main (TestBuskeForces.cpp:18) +==25781== +==25781== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25781== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==25781== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25781== by 0xF136822: ??? +==25781== by 0xF13696F: ??? +==25781== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25781== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25781== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25781== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25781== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25781== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25781== by 0x10210D38: PetscInitialize (pinit.c:924) +==25781== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25781== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25781== by 0x1373C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25781== by 0x1302A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25781== by 0x132EDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25781== by 0x132DD7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25781== by 0x1333EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25781== by 0x12EAA5: main (TestBuskeForces.cpp:18) +==25781== +==25781== Open file descriptor 115: +==25781== +==25781== +==25781== Open file descriptor 112: +==25781== +==25781== +==25781== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBuskeForces_valgrind.txt +==25781== +==25781== +==25781== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25781== +==25781== +==25781== +==25781== HEAP SUMMARY: +==25781== in use at exit: 618,350 bytes in 8,239 blocks +==25781== total heap usage: 56,046 allocs, 47,807 frees, 1,339,841,659 bytes allocated +==25781== +==25781== LEAK SUMMARY: +==25781== definitely lost: 0 bytes in 0 blocks +==25781== indirectly lost: 0 bytes in 0 blocks +==25781== possibly lost: 0 bytes in 0 blocks +==25781== still reachable: 56 bytes in 3 blocks +==25781== suppressed: 618,294 bytes in 8,236 blocks +==25781== Reachable blocks (those to which a pointer was found) are not shown. +==25781== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25781== +==25781== For lists of detected and suppressed errors, rerun with: -s +==25781== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCaBasedCellPopulation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCaBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..75ab6af38 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCaBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==25782== Memcheck, a memory error detector +==25782== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25782== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25782== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==25782== Parent PID: 23903 +==25782== +==25782== +==25782== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25782== Open file descriptor 12: +==25782== at 0xF83B07D: pipe (pipe.c:29) +==25782== by 0x196AD07D: ??? +==25782== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25782== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25782== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25782== by 0x10127D38: PetscInitialize (pinit.c:924) +==25782== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25782== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25782== by 0x16556C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25782== by 0x15DBC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25782== by 0x160D98: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25782== by 0x160C38: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25782== by 0x1612CF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25782== by 0x15BFE5: main (TestCaBasedCellPopulation.cpp:19) +==25782== +==25782== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25782== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==25782== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25782== by 0xF136822: ??? +==25782== by 0xF13696F: ??? +==25782== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25782== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25782== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25782== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25782== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25782== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25782== by 0x10127D38: PetscInitialize (pinit.c:924) +==25782== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25782== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25782== by 0x16556C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25782== by 0x15DBC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25782== by 0x160D98: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25782== by 0x160C38: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25782== by 0x1612CF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25782== by 0x15BFE5: main (TestCaBasedCellPopulation.cpp:19) +==25782== +==25782== Open file descriptor 115: +==25782== +==25782== +==25782== Open file descriptor 112: +==25782== +==25782== +==25782== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaBasedCellPopulation_valgrind.txt +==25782== +==25782== +==25782== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25782== +==25782== +==25782== +==25782== HEAP SUMMARY: +==25782== in use at exit: 618,350 bytes in 8,239 blocks +==25782== total heap usage: 75,851 allocs, 67,612 frees, 1,347,378,298 bytes allocated +==25782== +==25782== LEAK SUMMARY: +==25782== definitely lost: 0 bytes in 0 blocks +==25782== indirectly lost: 0 bytes in 0 blocks +==25782== possibly lost: 0 bytes in 0 blocks +==25782== still reachable: 56 bytes in 3 blocks +==25782== suppressed: 618,294 bytes in 8,236 blocks +==25782== Reachable blocks (those to which a pointer was found) are not shown. +==25782== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25782== +==25782== For lists of detected and suppressed errors, rerun with: -s +==25782== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCaBasedDivisionRules_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCaBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..c45bb80e7 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCaBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==25810== Memcheck, a memory error detector +==25810== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25810== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25810== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==25810== Parent PID: 23903 +==25810== +==25810== +==25810== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25810== Open file descriptor 12: +==25810== at 0xF09707D: pipe (pipe.c:29) +==25810== by 0x196AC07D: ??? +==25810== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25810== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25810== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25810== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25810== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25810== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25810== by 0x12E085: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25810== by 0x128EDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25810== by 0x12B8BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25810== by 0x12B75E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25810== by 0x12BDF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25810== by 0x127305: main (TestCaBasedDivisionRules.cpp:19) +==25810== +==25810== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25810== at 0xF09BA1C: __open_nocancel (open64_nocancel.c:39) +==25810== by 0xF01FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25810== by 0xD4D9822: ??? +==25810== by 0xD4D996F: ??? +==25810== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25810== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25810== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25810== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25810== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25810== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25810== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25810== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25810== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25810== by 0x12E085: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25810== by 0x128EDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25810== by 0x12B8BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25810== by 0x12B75E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25810== by 0x12BDF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25810== by 0x127305: main (TestCaBasedDivisionRules.cpp:19) +==25810== +==25810== Open file descriptor 115: +==25810== +==25810== +==25810== Open file descriptor 112: +==25810== +==25810== +==25810== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaBasedDivisionRules_valgrind.txt +==25810== +==25810== +==25810== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25810== +==25810== +==25810== +==25810== HEAP SUMMARY: +==25810== in use at exit: 618,366 bytes in 8,240 blocks +==25810== total heap usage: 56,339 allocs, 48,099 frees, 1,339,109,909 bytes allocated +==25810== +==25810== LEAK SUMMARY: +==25810== definitely lost: 0 bytes in 0 blocks +==25810== indirectly lost: 0 bytes in 0 blocks +==25810== possibly lost: 0 bytes in 0 blocks +==25810== still reachable: 72 bytes in 4 blocks +==25810== suppressed: 618,294 bytes in 8,236 blocks +==25810== Reachable blocks (those to which a pointer was found) are not shown. +==25810== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25810== +==25810== For lists of detected and suppressed errors, rerun with: -s +==25810== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCaUpdateRules_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCaUpdateRules_valgrind.txt new file mode 100644 index 000000000..74088a856 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCaUpdateRules_valgrind.txt @@ -0,0 +1,73 @@ +==25812== Memcheck, a memory error detector +==25812== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25812== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25812== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaUpdateRules -malloc_debug -malloc_dump -memory_info +==25812== Parent PID: 23903 +==25812== +==25812== +==25812== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25812== Open file descriptor 12: +==25812== at 0xDBE007D: pipe (pipe.c:29) +==25812== by 0x196AD07D: ??? +==25812== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25812== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25812== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25812== by 0x10129D38: PetscInitialize (pinit.c:924) +==25812== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25812== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25812== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25812== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25812== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25812== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25812== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25812== by 0x12A645: main (TestCaUpdateRules.cpp:18) +==25812== +==25812== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25812== at 0xDBE4A1C: __open_nocancel (open64_nocancel.c:39) +==25812== by 0xDB68BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25812== by 0xD4D9822: ??? +==25812== by 0xD4D996F: ??? +==25812== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25812== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25812== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25812== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25812== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25812== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25812== by 0x10129D38: PetscInitialize (pinit.c:924) +==25812== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25812== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25812== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25812== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25812== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25812== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25812== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25812== by 0x12A645: main (TestCaUpdateRules.cpp:18) +==25812== +==25812== Open file descriptor 115: +==25812== +==25812== +==25812== Open file descriptor 112: +==25812== +==25812== +==25812== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaUpdateRules_valgrind.txt +==25812== +==25812== +==25812== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25812== +==25812== +==25812== +==25812== HEAP SUMMARY: +==25812== in use at exit: 618,350 bytes in 8,239 blocks +==25812== total heap usage: 55,760 allocs, 47,521 frees, 1,339,202,198 bytes allocated +==25812== +==25812== LEAK SUMMARY: +==25812== definitely lost: 0 bytes in 0 blocks +==25812== indirectly lost: 0 bytes in 0 blocks +==25812== possibly lost: 0 bytes in 0 blocks +==25812== still reachable: 56 bytes in 3 blocks +==25812== suppressed: 618,294 bytes in 8,236 blocks +==25812== Reachable blocks (those to which a pointer was found) are not shown. +==25812== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25812== +==25812== For lists of detected and suppressed errors, rerun with: -s +==25812== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCableTestProblem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCableTestProblem_valgrind.txt new file mode 100644 index 000000000..de9747b25 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCableTestProblem_valgrind.txt @@ -0,0 +1,73 @@ +==24929== Memcheck, a memory error detector +==24929== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24929== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24929== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestCableTestProblem -malloc_debug -malloc_dump -memory_info +==24929== Parent PID: 23903 +==24929== +==24929== +==24929== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24929== Open file descriptor 12: +==24929== at 0x84E707D: pipe (pipe.c:29) +==24929== by 0x104D507D: ??? +==24929== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24929== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24929== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24929== by 0x6AACD38: PetscInitialize (pinit.c:924) +==24929== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24929== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24929== by 0x1419F6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24929== by 0x13CAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24929== by 0x13F69A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24929== by 0x13F595: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24929== by 0x13FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24929== by 0x13B2F5: main (TestCableTestProblem.cpp:18) +==24929== +==24929== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24929== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==24929== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24929== by 0x7D3B822: ??? +==24929== by 0x7D3B96F: ??? +==24929== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24929== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24929== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24929== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24929== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24929== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24929== by 0x6AACD38: PetscInitialize (pinit.c:924) +==24929== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24929== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24929== by 0x1419F6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24929== by 0x13CAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24929== by 0x13F69A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24929== by 0x13F595: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24929== by 0x13FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24929== by 0x13B2F5: main (TestCableTestProblem.cpp:18) +==24929== +==24929== Open file descriptor 115: +==24929== +==24929== +==24929== Open file descriptor 112: +==24929== +==24929== +==24929== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCableTestProblem_valgrind.txt +==24929== +==24929== +==24929== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24929== +==24929== +==24929== +==24929== HEAP SUMMARY: +==24929== in use at exit: 618,254 bytes in 8,238 blocks +==24929== total heap usage: 104,258 allocs, 96,020 frees, 1,341,042,428 bytes allocated +==24929== +==24929== LEAK SUMMARY: +==24929== definitely lost: 0 bytes in 0 blocks +==24929== indirectly lost: 0 bytes in 0 blocks +==24929== possibly lost: 0 bytes in 0 blocks +==24929== still reachable: 24 bytes in 2 blocks +==24929== suppressed: 618,230 bytes in 8,236 blocks +==24929== Reachable blocks (those to which a pointer was found) are not shown. +==24929== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24929== +==24929== For lists of detected and suppressed errors, rerun with: -s +==24929== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt new file mode 100644 index 000000000..4a124cd92 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt @@ -0,0 +1,73 @@ +==43047== Memcheck, a memory error detector +==43047== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43047== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43047== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacElectroMechanicsFurtherFunctionality -malloc_debug -malloc_dump -memory_info +==43047== Parent PID: 23903 +==43047== +==43047== +==43047== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43047== Open file descriptor 12: +==43047== at 0xBDA807D: pipe (pipe.c:29) +==43047== by 0x1432407D: ??? +==43047== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43047== by 0xBFA5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43047== by 0xBF3ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43047== by 0xA353D38: PetscInitialize (pinit.c:924) +==43047== by 0xA22A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43047== by 0xA22A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43047== by 0x123A6C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43047== by 0x11EC6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43047== by 0x1213DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43047== by 0x12127F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43047== by 0x121915: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43047== by 0x11D095: main (TestCardiacElectroMechanicsFurtherFunctionality.cpp:19) +==43047== +==43047== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43047== at 0xBDACA1C: __open_nocancel (open64_nocancel.c:39) +==43047== by 0xBD30BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43047== by 0xB5E2822: ??? +==43047== by 0xB5E296F: ??? +==43047== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43047== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43047== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43047== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43047== by 0xBFA5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43047== by 0xBF3ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43047== by 0xA353D38: PetscInitialize (pinit.c:924) +==43047== by 0xA22A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43047== by 0xA22A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43047== by 0x123A6C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43047== by 0x11EC6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43047== by 0x1213DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43047== by 0x12127F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43047== by 0x121915: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43047== by 0x11D095: main (TestCardiacElectroMechanicsFurtherFunctionality.cpp:19) +==43047== +==43047== Open file descriptor 115: +==43047== +==43047== +==43047== Open file descriptor 112: +==43047== +==43047== +==43047== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt +==43047== +==43047== +==43047== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43047== +==43047== +==43047== +==43047== HEAP SUMMARY: +==43047== in use at exit: 618,743 bytes in 8,244 blocks +==43047== total heap usage: 1,199,841 allocs, 1,191,597 frees, 1,496,533,735 bytes allocated +==43047== +==43047== LEAK SUMMARY: +==43047== definitely lost: 0 bytes in 0 blocks +==43047== indirectly lost: 0 bytes in 0 blocks +==43047== possibly lost: 0 bytes in 0 blocks +==43047== still reachable: 24 bytes in 2 blocks +==43047== suppressed: 618,719 bytes in 8,242 blocks +==43047== Reachable blocks (those to which a pointer was found) are not shown. +==43047== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43047== +==43047== For lists of detected and suppressed errors, rerun with: -s +==43047== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 57 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestCardiacElectroMechanicsProblem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCardiacElectroMechanicsProblem_valgrind.txt new file mode 100644 index 000000000..ffedfb9bc --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCardiacElectroMechanicsProblem_valgrind.txt @@ -0,0 +1,73 @@ +==43033== Memcheck, a memory error detector +==43033== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43033== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43033== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacElectroMechanicsProblem -malloc_debug -malloc_dump -memory_info +==43033== Parent PID: 23903 +==43033== +==43033== +==43033== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43033== Open file descriptor 12: +==43033== at 0xABF007D: pipe (pipe.c:29) +==43033== by 0x1432407D: ??? +==43033== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43033== by 0xA3F7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43033== by 0xA390D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43033== by 0xADFBD38: PetscInitialize (pinit.c:924) +==43033== by 0xA2B91D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43033== by 0xA2B9227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43033== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43033== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43033== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43033== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43033== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43033== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) +==43033== +==43033== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43033== at 0xABF4A1C: __open_nocancel (open64_nocancel.c:39) +==43033== by 0xAB78BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43033== by 0xA2F3822: ??? +==43033== by 0xA2F396F: ??? +==43033== by 0xDA036DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43033== by 0xDA03938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43033== by 0xD9B9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43033== by 0xD95E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43033== by 0xA3F7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43033== by 0xA390D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43033== by 0xADFBD38: PetscInitialize (pinit.c:924) +==43033== by 0xA2B91D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43033== by 0xA2B9227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43033== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43033== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43033== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43033== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43033== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43033== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) +==43033== +==43033== Open file descriptor 115: +==43033== +==43033== +==43033== Open file descriptor 112: +==43033== +==43033== +==43033== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacElectroMechanicsProblem_valgrind.txt +==43033== +==43033== +==43033== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43033== +==43033== +==43033== +==43033== HEAP SUMMARY: +==43033== in use at exit: 618,814 bytes in 8,248 blocks +==43033== total heap usage: 580,638 allocs, 572,390 frees, 1,482,473,175 bytes allocated +==43033== +==43033== LEAK SUMMARY: +==43033== definitely lost: 0 bytes in 0 blocks +==43033== indirectly lost: 0 bytes in 0 blocks +==43033== possibly lost: 0 bytes in 0 blocks +==43033== still reachable: 24 bytes in 2 blocks +==43033== suppressed: 618,790 bytes in 8,246 blocks +==43033== Reachable blocks (those to which a pointer was found) are not shown. +==43033== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43033== +==43033== For lists of detected and suppressed errors, rerun with: -s +==43033== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 79 from 38) diff --git a/log-files/2024-09-07_08-54-51/TestCardiacSimulationArchiver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCardiacSimulationArchiver_valgrind.txt new file mode 100644 index 000000000..1fea290ea --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCardiacSimulationArchiver_valgrind.txt @@ -0,0 +1,73 @@ +==43433== Memcheck, a memory error detector +==43433== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43433== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43433== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacSimulationArchiver -malloc_debug -malloc_dump -memory_info +==43433== Parent PID: 23903 +==43433== +==43433== +==43433== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43433== Open file descriptor 12: +==43433== at 0xBFAF07D: pipe (pipe.c:29) +==43433== by 0x1432407D: ??? +==43433== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43433== by 0xC32C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43433== by 0xC2C5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43433== by 0xA666D38: PetscInitialize (pinit.c:924) +==43433== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43433== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43433== by 0x207DA8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43433== by 0x200F5B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43433== by 0x204A44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43433== by 0x2048E4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43433== by 0x204F7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43433== by 0x1FF1D5: main (TestCardiacSimulationArchiver.cpp:19) +==43433== +==43433== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43433== at 0xBFB3A1C: __open_nocancel (open64_nocancel.c:39) +==43433== by 0xBF37BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43433== by 0xA510822: ??? +==43433== by 0xA51096F: ??? +==43433== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43433== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43433== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43433== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43433== by 0xC32C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43433== by 0xC2C5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43433== by 0xA666D38: PetscInitialize (pinit.c:924) +==43433== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43433== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43433== by 0x207DA8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43433== by 0x200F5B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43433== by 0x204A44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43433== by 0x2048E4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43433== by 0x204F7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43433== by 0x1FF1D5: main (TestCardiacSimulationArchiver.cpp:19) +==43433== +==43433== Open file descriptor 115: +==43433== +==43433== +==43433== Open file descriptor 112: +==43433== +==43433== +==43433== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacSimulationArchiver_valgrind.txt +==43433== +==43433== +==43433== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43433== +==43433== +==43433== +==43433== HEAP SUMMARY: +==43433== in use at exit: 618,743 bytes in 8,244 blocks +==43433== total heap usage: 2,894,969 allocs, 2,886,725 frees, 2,307,102,019 bytes allocated +==43433== +==43433== LEAK SUMMARY: +==43433== definitely lost: 0 bytes in 0 blocks +==43433== indirectly lost: 0 bytes in 0 blocks +==43433== possibly lost: 0 bytes in 0 blocks +==43433== still reachable: 24 bytes in 2 blocks +==43433== suppressed: 618,719 bytes in 8,242 blocks +==43433== Reachable blocks (those to which a pointer was found) are not shown. +==43433== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43433== +==43433== For lists of detected and suppressed errors, rerun with: -s +==43433== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 138 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestCardiacSimulation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCardiacSimulation_valgrind.txt new file mode 100644 index 000000000..f0b86415e --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCardiacSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==43432== Memcheck, a memory error detector +==43432== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43432== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43432== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacSimulation -malloc_debug -malloc_dump -memory_info +==43432== Parent PID: 23903 +==43432== +==43432== +==43432== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43432== Open file descriptor 12: +==43432== at 0x892407D: pipe (pipe.c:29) +==43432== by 0x1432507D: ??? +==43432== by 0xEE6D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43432== by 0xA01F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43432== by 0x9FB8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43432== by 0x8CAFD38: PetscInitialize (pinit.c:924) +==43432== by 0x820D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43432== by 0x820D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43432== by 0x1202B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43432== by 0x11A98D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43432== by 0x11E13C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43432== by 0x11DFDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43432== by 0x11E673: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43432== by 0x118DB5: main (TestCardiacSimulation.cpp:19) +==43432== +==43432== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43432== at 0x8928A1C: __open_nocancel (open64_nocancel.c:39) +==43432== by 0x88ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43432== by 0x8247822: ??? +==43432== by 0x824796F: ??? +==43432== by 0xEF126DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43432== by 0xEF12938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43432== by 0xEEC8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43432== by 0xEE6D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43432== by 0xA01F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43432== by 0x9FB8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43432== by 0x8CAFD38: PetscInitialize (pinit.c:924) +==43432== by 0x820D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43432== by 0x820D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43432== by 0x1202B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43432== by 0x11A98D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43432== by 0x11E13C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43432== by 0x11DFDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43432== by 0x11E673: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43432== by 0x118DB5: main (TestCardiacSimulation.cpp:19) +==43432== +==43432== Open file descriptor 115: +==43432== +==43432== +==43432== Open file descriptor 112: +==43432== +==43432== +==43432== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacSimulation_valgrind.txt +==43432== +==43432== +==43432== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43432== +==43432== +==43432== +==43432== HEAP SUMMARY: +==43432== in use at exit: 625,875 bytes in 8,260 blocks +==43432== total heap usage: 4,756,895 allocs, 4,748,635 frees, 2,828,620,747 bytes allocated +==43432== +==43432== LEAK SUMMARY: +==43432== definitely lost: 0 bytes in 0 blocks +==43432== indirectly lost: 0 bytes in 0 blocks +==43432== possibly lost: 0 bytes in 0 blocks +==43432== still reachable: 7,156 bytes in 18 blocks +==43432== suppressed: 618,719 bytes in 8,242 blocks +==43432== Reachable blocks (those to which a pointer was found) are not shown. +==43432== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43432== +==43432== For lists of detected and suppressed errors, rerun with: -s +==43432== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 231 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestCellBasedCellProperties_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellBasedCellProperties_valgrind.txt new file mode 100644 index 000000000..aad19ec45 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellBasedCellProperties_valgrind.txt @@ -0,0 +1,73 @@ +==25269== Memcheck, a memory error detector +==25269== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25269== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25269== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedCellProperties -malloc_debug -malloc_dump -memory_info +==25269== Parent PID: 23903 +==25269== +==25269== +==25269== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25269== Open file descriptor 12: +==25269== at 0xED5007D: pipe (pipe.c:29) +==25269== by 0x196AC07D: ??? +==25269== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25269== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25269== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25269== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25269== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25269== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25269== by 0x12F18B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25269== by 0x129EE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25269== by 0x12CAE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25269== by 0x12C980: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25269== by 0x12D017: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25269== by 0x128305: main (TestCellBasedCellProperties.cpp:19) +==25269== +==25269== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25269== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25269== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25269== by 0xD4D9822: ??? +==25269== by 0xD4D996F: ??? +==25269== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25269== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25269== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25269== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25269== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25269== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25269== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25269== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25269== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25269== by 0x12F18B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25269== by 0x129EE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25269== by 0x12CAE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25269== by 0x12C980: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25269== by 0x12D017: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25269== by 0x128305: main (TestCellBasedCellProperties.cpp:19) +==25269== +==25269== Open file descriptor 115: +==25269== +==25269== +==25269== Open file descriptor 112: +==25269== +==25269== +==25269== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedCellProperties_valgrind.txt +==25269== +==25269== +==25269== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25269== +==25269== +==25269== +==25269== HEAP SUMMARY: +==25269== in use at exit: 618,350 bytes in 8,239 blocks +==25269== total heap usage: 53,421 allocs, 45,182 frees, 1,338,995,585 bytes allocated +==25269== +==25269== LEAK SUMMARY: +==25269== definitely lost: 0 bytes in 0 blocks +==25269== indirectly lost: 0 bytes in 0 blocks +==25269== possibly lost: 0 bytes in 0 blocks +==25269== still reachable: 56 bytes in 3 blocks +==25269== suppressed: 618,294 bytes in 8,236 blocks +==25269== Reachable blocks (those to which a pointer was found) are not shown. +==25269== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25269== +==25269== For lists of detected and suppressed errors, rerun with: -s +==25269== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCellBasedEllipticPdeSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellBasedEllipticPdeSolver_valgrind.txt new file mode 100644 index 000000000..9c1204514 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellBasedEllipticPdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25370== Memcheck, a memory error detector +==25370== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25370== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25370== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedEllipticPdeSolver -malloc_debug -malloc_dump -memory_info +==25370== Parent PID: 23903 +==25370== +==25370== +==25370== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25370== Open file descriptor 12: +==25370== at 0x1108C07D: pipe (pipe.c:29) +==25370== by 0x196AC07D: ??? +==25370== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25370== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25370== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25370== by 0xF651D38: PetscInitialize (pinit.c:924) +==25370== by 0xF5281D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25370== by 0xF528227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25370== by 0x13C922: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25370== by 0x137A33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25370== by 0x13A5DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25370== by 0x13A4D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25370== by 0x13AAE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25370== by 0x136235: main (TestCellBasedEllipticPdeSolver.cpp:18) +==25370== +==25370== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25370== at 0x11090A1C: __open_nocancel (open64_nocancel.c:39) +==25370== by 0x11014BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25370== by 0x108E0822: ??? +==25370== by 0x108E096F: ??? +==25370== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25370== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25370== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25370== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25370== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25370== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25370== by 0xF651D38: PetscInitialize (pinit.c:924) +==25370== by 0xF5281D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25370== by 0xF528227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25370== by 0x13C922: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25370== by 0x137A33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25370== by 0x13A5DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25370== by 0x13A4D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25370== by 0x13AAE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25370== by 0x136235: main (TestCellBasedEllipticPdeSolver.cpp:18) +==25370== +==25370== Open file descriptor 115: +==25370== +==25370== +==25370== Open file descriptor 112: +==25370== +==25370== +==25370== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEllipticPdeSolver_valgrind.txt +==25370== +==25370== +==25370== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25370== +==25370== +==25370== +==25370== HEAP SUMMARY: +==25370== in use at exit: 618,318 bytes in 8,238 blocks +==25370== total heap usage: 55,378 allocs, 47,140 frees, 1,339,444,805 bytes allocated +==25370== +==25370== LEAK SUMMARY: +==25370== definitely lost: 0 bytes in 0 blocks +==25370== indirectly lost: 0 bytes in 0 blocks +==25370== possibly lost: 0 bytes in 0 blocks +==25370== still reachable: 24 bytes in 2 blocks +==25370== suppressed: 618,294 bytes in 8,236 blocks +==25370== Reachable blocks (those to which a pointer was found) are not shown. +==25370== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25370== +==25370== For lists of detected and suppressed errors, rerun with: -s +==25370== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestCellBasedEllipticPdes_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellBasedEllipticPdes_valgrind.txt new file mode 100644 index 000000000..a6ab23b7f --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellBasedEllipticPdes_valgrind.txt @@ -0,0 +1,73 @@ +==25357== Memcheck, a memory error detector +==25357== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25357== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25357== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedEllipticPdes -malloc_debug -malloc_dump -memory_info +==25357== Parent PID: 23903 +==25357== +==25357== +==25357== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25357== Open file descriptor 12: +==25357== at 0x10CF207D: pipe (pipe.c:29) +==25357== by 0x196AD07D: ??? +==25357== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25357== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25357== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25357== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25357== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25357== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25357== by 0x12CAB7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25357== by 0x127CC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25357== by 0x12A3DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25357== by 0x12A2D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25357== by 0x12A8EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25357== by 0x1264C5: main (TestCellBasedEllipticPdes.cpp:18) +==25357== +==25357== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25357== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==25357== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25357== by 0xF136822: ??? +==25357== by 0xF13696F: ??? +==25357== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25357== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25357== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25357== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25357== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25357== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25357== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25357== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25357== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25357== by 0x12CAB7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25357== by 0x127CC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25357== by 0x12A3DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25357== by 0x12A2D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25357== by 0x12A8EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25357== by 0x1264C5: main (TestCellBasedEllipticPdes.cpp:18) +==25357== +==25357== Open file descriptor 115: +==25357== +==25357== +==25357== Open file descriptor 112: +==25357== +==25357== +==25357== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEllipticPdes_valgrind.txt +==25357== +==25357== +==25357== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25357== +==25357== +==25357== +==25357== HEAP SUMMARY: +==25357== in use at exit: 618,350 bytes in 8,239 blocks +==25357== total heap usage: 79,163 allocs, 70,924 frees, 1,343,927,139 bytes allocated +==25357== +==25357== LEAK SUMMARY: +==25357== definitely lost: 0 bytes in 0 blocks +==25357== indirectly lost: 0 bytes in 0 blocks +==25357== possibly lost: 0 bytes in 0 blocks +==25357== still reachable: 56 bytes in 3 blocks +==25357== suppressed: 618,294 bytes in 8,236 blocks +==25357== Reachable blocks (those to which a pointer was found) are not shown. +==25357== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25357== +==25357== For lists of detected and suppressed errors, rerun with: -s +==25357== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCellBasedEventHandler_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellBasedEventHandler_valgrind.txt new file mode 100644 index 000000000..d22d8d58c --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellBasedEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==23933== Memcheck, a memory error detector +==23933== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23933== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23933== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCellBasedEventHandler -malloc_debug -malloc_dump -memory_info +==23933== Parent PID: 23903 +==23933== +==23933== +==23933== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23933== Open file descriptor 12: +==23933== at 0x4DEB07D: pipe (pipe.c:29) +==23933== by 0xAEA307D: ??? +==23933== by 0x643A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23933== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23933== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23933== by 0x5036D38: PetscInitialize (pinit.c:924) +==23933== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23933== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23933== by 0x114A22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23933== by 0x110173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23933== by 0x112AEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23933== by 0x1129E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23933== by 0x112FFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23933== by 0x10E975: main (TestCellBasedEventHandler.cpp:18) +==23933== +==23933== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23933== at 0x4DEFA1C: __open_nocancel (open64_nocancel.c:39) +==23933== by 0x4D73BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23933== by 0x4934822: ??? +==23933== by 0x493496F: ??? +==23933== by 0x64E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23933== by 0x64E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23933== by 0x6497922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23933== by 0x643A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23933== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23933== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23933== by 0x5036D38: PetscInitialize (pinit.c:924) +==23933== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23933== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23933== by 0x114A22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23933== by 0x110173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23933== by 0x112AEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23933== by 0x1129E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23933== by 0x112FFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23933== by 0x10E975: main (TestCellBasedEventHandler.cpp:18) +==23933== +==23933== Open file descriptor 115: +==23933== +==23933== +==23933== Open file descriptor 112: +==23933== +==23933== +==23933== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEventHandler_valgrind.txt +==23933== +==23933== +==23933== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23933== +==23933== +==23933== +==23933== HEAP SUMMARY: +==23933== in use at exit: 617,838 bytes in 8,238 blocks +==23933== total heap usage: 44,913 allocs, 36,675 frees, 1,338,159,944 bytes allocated +==23933== +==23933== LEAK SUMMARY: +==23933== definitely lost: 0 bytes in 0 blocks +==23933== indirectly lost: 0 bytes in 0 blocks +==23933== possibly lost: 0 bytes in 0 blocks +==23933== still reachable: 24 bytes in 2 blocks +==23933== suppressed: 617,814 bytes in 8,236 blocks +==23933== Reachable blocks (those to which a pointer was found) are not shown. +==23933== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23933== +==23933== For lists of detected and suppressed errors, rerun with: -s +==23933== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestCellBasedParabolicPdes_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellBasedParabolicPdes_valgrind.txt new file mode 100644 index 000000000..c3a93fd87 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellBasedParabolicPdes_valgrind.txt @@ -0,0 +1,73 @@ +==25383== Memcheck, a memory error detector +==25383== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25383== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25383== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedParabolicPdes -malloc_debug -malloc_dump -memory_info +==25383== Parent PID: 23903 +==25383== +==25383== +==25383== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25383== Open file descriptor 12: +==25383== at 0x10CF207D: pipe (pipe.c:29) +==25383== by 0x196AD07D: ??? +==25383== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25383== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25383== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25383== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25383== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25383== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25383== by 0x12B8B3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25383== by 0x126B23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25383== by 0x1291D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25383== by 0x1290D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25383== by 0x1296E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25383== by 0x125325: main (TestCellBasedParabolicPdes.cpp:18) +==25383== +==25383== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25383== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==25383== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25383== by 0xF136822: ??? +==25383== by 0xF13696F: ??? +==25383== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25383== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25383== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25383== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25383== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25383== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25383== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25383== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25383== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25383== by 0x12B8B3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25383== by 0x126B23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25383== by 0x1291D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25383== by 0x1290D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25383== by 0x1296E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25383== by 0x125325: main (TestCellBasedParabolicPdes.cpp:18) +==25383== +==25383== Open file descriptor 115: +==25383== +==25383== +==25383== Open file descriptor 112: +==25383== +==25383== +==25383== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedParabolicPdes_valgrind.txt +==25383== +==25383== +==25383== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25383== +==25383== +==25383== +==25383== HEAP SUMMARY: +==25383== in use at exit: 618,350 bytes in 8,239 blocks +==25383== total heap usage: 69,552 allocs, 61,313 frees, 1,342,137,638 bytes allocated +==25383== +==25383== LEAK SUMMARY: +==25383== definitely lost: 0 bytes in 0 blocks +==25383== indirectly lost: 0 bytes in 0 blocks +==25383== possibly lost: 0 bytes in 0 blocks +==25383== still reachable: 56 bytes in 3 blocks +==25383== suppressed: 618,294 bytes in 8,236 blocks +==25383== Reachable blocks (those to which a pointer was found) are not shown. +==25383== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25383== +==25383== For lists of detected and suppressed errors, rerun with: -s +==25383== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCellBetaCateninWriter_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellBetaCateninWriter_valgrind.txt new file mode 100644 index 000000000..1016ef403 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellBetaCateninWriter_valgrind.txt @@ -0,0 +1,73 @@ +==40322== Memcheck, a memory error detector +==40322== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40322== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40322== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellBetaCateninWriter -malloc_debug -malloc_dump -memory_info +==40322== Parent PID: 23903 +==40322== +==40322== +==40322== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40322== Open file descriptor 12: +==40322== at 0x110FD07D: pipe (pipe.c:29) +==40322== by 0x1B36F07D: ??? +==40322== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40322== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40322== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40322== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40322== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40322== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40322== by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40322== by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40322== by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40322== by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40322== by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40322== by 0x12E905: main (TestCellBetaCateninWriter.cpp:18) +==40322== +==40322== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40322== at 0x11101A1C: __open_nocancel (open64_nocancel.c:39) +==40322== by 0x11085BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40322== by 0x109F6822: ??? +==40322== by 0x109F696F: ??? +==40322== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40322== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40322== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40322== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40322== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40322== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40322== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40322== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40322== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40322== by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40322== by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40322== by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40322== by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40322== by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40322== by 0x12E905: main (TestCellBetaCateninWriter.cpp:18) +==40322== +==40322== Open file descriptor 115: +==40322== +==40322== +==40322== Open file descriptor 112: +==40322== +==40322== +==40322== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBetaCateninWriter_valgrind.txt +==40322== +==40322== +==40322== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40322== +==40322== +==40322== +==40322== HEAP SUMMARY: +==40322== in use at exit: 618,446 bytes in 8,240 blocks +==40322== total heap usage: 63,271 allocs, 55,031 frees, 1,341,084,173 bytes allocated +==40322== +==40322== LEAK SUMMARY: +==40322== definitely lost: 0 bytes in 0 blocks +==40322== indirectly lost: 0 bytes in 0 blocks +==40322== possibly lost: 0 bytes in 0 blocks +==40322== still reachable: 136 bytes in 4 blocks +==40322== suppressed: 618,310 bytes in 8,236 blocks +==40322== Reachable blocks (those to which a pointer was found) are not shown. +==40322== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40322== +==40322== For lists of detected and suppressed errors, rerun with: -s +==40322== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCellCycleModelOdeSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellCycleModelOdeSolver_valgrind.txt new file mode 100644 index 000000000..b6bd538d3 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellCycleModelOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25270== Memcheck, a memory error detector +==25270== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25270== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25270== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellCycleModelOdeSolver -malloc_debug -malloc_dump -memory_info +==25270== Parent PID: 23903 +==25270== +==25270== +==25270== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25270== Open file descriptor 12: +==25270== at 0xEF9407D: pipe (pipe.c:29) +==25270== by 0x196AC07D: ??? +==25270== by 0x13C514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25270== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25270== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25270== by 0xD871D38: PetscInitialize (pinit.c:924) +==25270== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25270== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25270== by 0x162DFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25270== by 0x15D597: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25270== by 0x1604CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25270== by 0x16036A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25270== by 0x160A01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25270== by 0x15B575: main (TestCellCycleModelOdeSolver.cpp:19) +==25270== +==25270== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25270== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25270== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25270== by 0xD71D822: ??? +==25270== by 0xD71D96F: ??? +==25270== by 0x13CF66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25270== by 0x13CF6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25270== by 0x13CAC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25270== by 0x13C512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25270== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25270== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25270== by 0xD871D38: PetscInitialize (pinit.c:924) +==25270== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25270== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25270== by 0x162DFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25270== by 0x15D597: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25270== by 0x1604CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25270== by 0x16036A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25270== by 0x160A01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25270== by 0x15B575: main (TestCellCycleModelOdeSolver.cpp:19) +==25270== +==25270== Open file descriptor 115: +==25270== +==25270== +==25270== Open file descriptor 112: +==25270== +==25270== +==25270== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellCycleModelOdeSolver_valgrind.txt +==25270== +==25270== +==25270== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25270== +==25270== +==25270== +==25270== HEAP SUMMARY: +==25270== in use at exit: 618,350 bytes in 8,239 blocks +==25270== total heap usage: 547,401 allocs, 539,162 frees, 1,344,759,203 bytes allocated +==25270== +==25270== LEAK SUMMARY: +==25270== definitely lost: 0 bytes in 0 blocks +==25270== indirectly lost: 0 bytes in 0 blocks +==25270== possibly lost: 0 bytes in 0 blocks +==25270== still reachable: 56 bytes in 3 blocks +==25270== suppressed: 618,294 bytes in 8,236 blocks +==25270== Reachable blocks (those to which a pointer was found) are not shown. +==25270== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25270== +==25270== For lists of detected and suppressed errors, rerun with: -s +==25270== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCellDataMaps_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellDataMaps_valgrind.txt new file mode 100644 index 000000000..13c296679 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellDataMaps_valgrind.txt @@ -0,0 +1,73 @@ +==25271== Memcheck, a memory error detector +==25271== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25271== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25271== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellDataMaps -malloc_debug -malloc_dump -memory_info +==25271== Parent PID: 23903 +==25271== +==25271== +==25271== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25271== Open file descriptor 12: +==25271== at 0xED9D07D: pipe (pipe.c:29) +==25271== by 0x196AC07D: ??? +==25271== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25271== by 0xE9EC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25271== by 0xE985D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25271== by 0xD659D38: PetscInitialize (pinit.c:924) +==25271== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25271== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25271== by 0x11C5E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25271== by 0x11792D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25271== by 0x11A1FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25271== by 0x11A09E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25271== by 0x11A735: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25271== by 0x115D55: main (TestCellDataMaps.cpp:19) +==25271== +==25271== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25271== at 0xEDA1A1C: __open_nocancel (open64_nocancel.c:39) +==25271== by 0xED25BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25271== by 0xE8E8822: ??? +==25271== by 0xE8E896F: ??? +==25271== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25271== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25271== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25271== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25271== by 0xE9EC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25271== by 0xE985D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25271== by 0xD659D38: PetscInitialize (pinit.c:924) +==25271== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25271== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25271== by 0x11C5E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25271== by 0x11792D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25271== by 0x11A1FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25271== by 0x11A09E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25271== by 0x11A735: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25271== by 0x115D55: main (TestCellDataMaps.cpp:19) +==25271== +==25271== Open file descriptor 115: +==25271== +==25271== +==25271== Open file descriptor 112: +==25271== +==25271== +==25271== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellDataMaps_valgrind.txt +==25271== +==25271== +==25271== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25271== +==25271== +==25271== +==25271== HEAP SUMMARY: +==25271== in use at exit: 618,478 bytes in 8,240 blocks +==25271== total heap usage: 53,648 allocs, 45,408 frees, 1,338,978,643 bytes allocated +==25271== +==25271== LEAK SUMMARY: +==25271== definitely lost: 0 bytes in 0 blocks +==25271== indirectly lost: 0 bytes in 0 blocks +==25271== possibly lost: 0 bytes in 0 blocks +==25271== still reachable: 184 bytes in 4 blocks +==25271== suppressed: 618,294 bytes in 8,236 blocks +==25271== Reachable blocks (those to which a pointer was found) are not shown. +==25271== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25271== +==25271== For lists of detected and suppressed errors, rerun with: -s +==25271== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestCellForCrypt_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellForCrypt_valgrind.txt new file mode 100644 index 000000000..5e52ba8a9 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40110== Memcheck, a memory error detector +==40110== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40110== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40110== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellForCrypt -malloc_debug -malloc_dump -memory_info +==40110== Parent PID: 23903 +==40110== +==40110== +==40110== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40110== Open file descriptor 12: +==40110== at 0xF45E07D: pipe (pipe.c:29) +==40110== by 0x1B36E07D: ??? +==40110== by 0x165804CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40110== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40110== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40110== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40110== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40110== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40110== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40110== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40110== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40110== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40110== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40110== by 0x118975: main (TestCellForCrypt.cpp:18) +==40110== +==40110== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40110== at 0xF462A1C: __open_nocancel (open64_nocancel.c:39) +==40110== by 0xF3E6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40110== by 0xED9B822: ??? +==40110== by 0xED9B96F: ??? +==40110== by 0x166256DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40110== by 0x16625938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40110== by 0x165DB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40110== by 0x165802DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40110== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40110== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40110== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40110== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40110== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40110== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40110== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40110== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40110== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40110== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40110== by 0x118975: main (TestCellForCrypt.cpp:18) +==40110== +==40110== Open file descriptor 115: +==40110== +==40110== +==40110== Open file descriptor 112: +==40110== +==40110== +==40110== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellForCrypt_valgrind.txt +==40110== +==40110== +==40110== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40110== +==40110== +==40110== +==40110== HEAP SUMMARY: +==40110== in use at exit: 618,494 bytes in 8,240 blocks +==40110== total heap usage: 55,770 allocs, 47,530 frees, 1,339,199,223 bytes allocated +==40110== +==40110== LEAK SUMMARY: +==40110== definitely lost: 0 bytes in 0 blocks +==40110== indirectly lost: 0 bytes in 0 blocks +==40110== possibly lost: 0 bytes in 0 blocks +==40110== still reachable: 184 bytes in 4 blocks +==40110== suppressed: 618,310 bytes in 8,236 blocks +==40110== Reachable blocks (those to which a pointer was found) are not shown. +==40110== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40110== +==40110== For lists of detected and suppressed errors, rerun with: -s +==40110== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCellKillers_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellKillers_valgrind.txt new file mode 100644 index 000000000..6cc9c33df --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellKillers_valgrind.txt @@ -0,0 +1,73 @@ +==25813== Memcheck, a memory error detector +==25813== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25813== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25813== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellKillers -malloc_debug -malloc_dump -memory_info +==25813== Parent PID: 23903 +==25813== +==25813== +==25813== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25813== Open file descriptor 12: +==25813== at 0x10DD907D: pipe (pipe.c:29) +==25813== by 0x196AD07D: ??? +==25813== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25813== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25813== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25813== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25813== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25813== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25813== by 0x1A5341: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25813== by 0x19D239: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25813== by 0x1A087C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25813== by 0x1A071C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25813== by 0x1A0DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25813== by 0x19B655: main (TestCellKillers.cpp:19) +==25813== +==25813== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25813== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==25813== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25813== by 0xF136822: ??? +==25813== by 0xF13696F: ??? +==25813== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25813== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25813== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25813== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25813== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25813== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25813== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25813== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25813== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25813== by 0x1A5341: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25813== by 0x19D239: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25813== by 0x1A087C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25813== by 0x1A071C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25813== by 0x1A0DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25813== by 0x19B655: main (TestCellKillers.cpp:19) +==25813== +==25813== Open file descriptor 115: +==25813== +==25813== +==25813== Open file descriptor 112: +==25813== +==25813== +==25813== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellKillers_valgrind.txt +==25813== +==25813== +==25813== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25813== +==25813== +==25813== +==25813== HEAP SUMMARY: +==25813== in use at exit: 618,350 bytes in 8,239 blocks +==25813== total heap usage: 119,759 allocs, 111,520 frees, 1,344,138,778 bytes allocated +==25813== +==25813== LEAK SUMMARY: +==25813== definitely lost: 0 bytes in 0 blocks +==25813== indirectly lost: 0 bytes in 0 blocks +==25813== possibly lost: 0 bytes in 0 blocks +==25813== still reachable: 56 bytes in 3 blocks +==25813== suppressed: 618,294 bytes in 8,236 blocks +==25813== Reachable blocks (those to which a pointer was found) are not shown. +==25813== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25813== +==25813== For lists of detected and suppressed errors, rerun with: -s +==25813== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCellMutationStates_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellMutationStates_valgrind.txt new file mode 100644 index 000000000..86657885f --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellMutationStates_valgrind.txt @@ -0,0 +1,73 @@ +==25280== Memcheck, a memory error detector +==25280== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25280== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25280== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellMutationStates -malloc_debug -malloc_dump -memory_info +==25280== Parent PID: 23903 +==25280== +==25280== +==25280== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25280== Open file descriptor 12: +==25280== at 0xED5007D: pipe (pipe.c:29) +==25280== by 0x196AC07D: ??? +==25280== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25280== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25280== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25280== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25280== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25280== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25280== by 0x12BE69: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25280== by 0x126E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25280== by 0x129792: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25280== by 0x129632: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25280== by 0x129CC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25280== by 0x125225: main (TestCellMutationStates.cpp:19) +==25280== +==25280== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25280== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25280== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25280== by 0xD4D9822: ??? +==25280== by 0xD4D996F: ??? +==25280== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25280== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25280== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25280== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25280== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25280== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25280== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25280== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25280== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25280== by 0x12BE69: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25280== by 0x126E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25280== by 0x129792: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25280== by 0x129632: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25280== by 0x129CC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25280== by 0x125225: main (TestCellMutationStates.cpp:19) +==25280== +==25280== Open file descriptor 115: +==25280== +==25280== +==25280== Open file descriptor 112: +==25280== +==25280== +==25280== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellMutationStates_valgrind.txt +==25280== +==25280== +==25280== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25280== +==25280== +==25280== +==25280== HEAP SUMMARY: +==25280== in use at exit: 618,350 bytes in 8,239 blocks +==25280== total heap usage: 53,167 allocs, 44,928 frees, 1,338,924,474 bytes allocated +==25280== +==25280== LEAK SUMMARY: +==25280== definitely lost: 0 bytes in 0 blocks +==25280== indirectly lost: 0 bytes in 0 blocks +==25280== possibly lost: 0 bytes in 0 blocks +==25280== still reachable: 56 bytes in 3 blocks +==25280== suppressed: 618,294 bytes in 8,236 blocks +==25280== Reachable blocks (those to which a pointer was found) are not shown. +==25280== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25280== +==25280== For lists of detected and suppressed errors, rerun with: -s +==25280== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCellPopulationBoundaryConditions_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellPopulationBoundaryConditions_valgrind.txt new file mode 100644 index 000000000..69659d911 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellPopulationBoundaryConditions_valgrind.txt @@ -0,0 +1,73 @@ +==25833== Memcheck, a memory error detector +==25833== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25833== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25833== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationBoundaryConditions -malloc_debug -malloc_dump -memory_info +==25833== Parent PID: 23903 +==25833== +==25833== +==25833== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25833== Open file descriptor 12: +==25833== at 0xF92407D: pipe (pipe.c:29) +==25833== by 0x196AD07D: ??? +==25833== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25833== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25833== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25833== by 0x10210D38: PetscInitialize (pinit.c:924) +==25833== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25833== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25833== by 0x1550EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25833== by 0x14DBDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25833== by 0x150A32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25833== by 0x1508D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25833== by 0x150F69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25833== by 0x14C005: main (TestCellPopulationBoundaryConditions.cpp:19) +==25833== +==25833== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25833== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==25833== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25833== by 0xF136822: ??? +==25833== by 0xF13696F: ??? +==25833== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25833== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25833== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25833== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25833== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25833== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25833== by 0x10210D38: PetscInitialize (pinit.c:924) +==25833== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25833== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25833== by 0x1550EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25833== by 0x14DBDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25833== by 0x150A32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25833== by 0x1508D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25833== by 0x150F69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25833== by 0x14C005: main (TestCellPopulationBoundaryConditions.cpp:19) +==25833== +==25833== Open file descriptor 115: +==25833== +==25833== +==25833== Open file descriptor 112: +==25833== +==25833== +==25833== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationBoundaryConditions_valgrind.txt +==25833== +==25833== +==25833== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25833== +==25833== +==25833== +==25833== HEAP SUMMARY: +==25833== in use at exit: 618,350 bytes in 8,239 blocks +==25833== total heap usage: 70,299 allocs, 62,060 frees, 1,342,462,545 bytes allocated +==25833== +==25833== LEAK SUMMARY: +==25833== definitely lost: 0 bytes in 0 blocks +==25833== indirectly lost: 0 bytes in 0 blocks +==25833== possibly lost: 0 bytes in 0 blocks +==25833== still reachable: 56 bytes in 3 blocks +==25833== suppressed: 618,294 bytes in 8,236 blocks +==25833== Reachable blocks (those to which a pointer was found) are not shown. +==25833== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25833== +==25833== For lists of detected and suppressed errors, rerun with: -s +==25833== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCellPopulationCountWriters_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellPopulationCountWriters_valgrind.txt new file mode 100644 index 000000000..1a7bbc92f --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellPopulationCountWriters_valgrind.txt @@ -0,0 +1,73 @@ +==25834== Memcheck, a memory error detector +==25834== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25834== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25834== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationCountWriters -malloc_debug -malloc_dump -memory_info +==25834== Parent PID: 23903 +==25834== +==25834== +==25834== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25834== Open file descriptor 12: +==25834== at 0xF83B07D: pipe (pipe.c:29) +==25834== by 0x196AD07D: ??? +==25834== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25834== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25834== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25834== by 0x10127D38: PetscInitialize (pinit.c:924) +==25834== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25834== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25834== by 0x137BD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25834== by 0x130FA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25834== by 0x133996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25834== by 0x133891: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25834== by 0x133EA5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25834== by 0x12F7A5: main (TestCellPopulationCountWriters.cpp:18) +==25834== +==25834== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25834== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==25834== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25834== by 0xF136822: ??? +==25834== by 0xF13696F: ??? +==25834== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25834== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25834== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25834== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25834== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25834== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25834== by 0x10127D38: PetscInitialize (pinit.c:924) +==25834== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25834== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25834== by 0x137BD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25834== by 0x130FA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25834== by 0x133996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25834== by 0x133891: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25834== by 0x133EA5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25834== by 0x12F7A5: main (TestCellPopulationCountWriters.cpp:18) +==25834== +==25834== Open file descriptor 115: +==25834== +==25834== +==25834== Open file descriptor 112: +==25834== +==25834== +==25834== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationCountWriters_valgrind.txt +==25834== +==25834== +==25834== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25834== +==25834== +==25834== +==25834== HEAP SUMMARY: +==25834== in use at exit: 618,350 bytes in 8,239 blocks +==25834== total heap usage: 57,820 allocs, 49,581 frees, 1,346,110,478 bytes allocated +==25834== +==25834== LEAK SUMMARY: +==25834== definitely lost: 0 bytes in 0 blocks +==25834== indirectly lost: 0 bytes in 0 blocks +==25834== possibly lost: 0 bytes in 0 blocks +==25834== still reachable: 56 bytes in 3 blocks +==25834== suppressed: 618,294 bytes in 8,236 blocks +==25834== Reachable blocks (those to which a pointer was found) are not shown. +==25834== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25834== +==25834== For lists of detected and suppressed errors, rerun with: -s +==25834== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCellPopulationEventWriters_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellPopulationEventWriters_valgrind.txt new file mode 100644 index 000000000..99fcb9818 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellPopulationEventWriters_valgrind.txt @@ -0,0 +1,73 @@ +==25835== Memcheck, a memory error detector +==25835== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25835== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25835== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationEventWriters -malloc_debug -malloc_dump -memory_info +==25835== Parent PID: 23903 +==25835== +==25835== +==25835== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25835== Open file descriptor 12: +==25835== at 0xF83B07D: pipe (pipe.c:29) +==25835== by 0x196AD07D: ??? +==25835== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25835== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25835== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25835== by 0x10127D38: PetscInitialize (pinit.c:924) +==25835== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25835== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25835== by 0x13559C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25835== by 0x12E53D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25835== by 0x130F8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25835== by 0x130E2C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25835== by 0x1314C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25835== by 0x12C965: main (TestCellPopulationEventWriters.cpp:19) +==25835== +==25835== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25835== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==25835== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25835== by 0xF136822: ??? +==25835== by 0xF13696F: ??? +==25835== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25835== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25835== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25835== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25835== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25835== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25835== by 0x10127D38: PetscInitialize (pinit.c:924) +==25835== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25835== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25835== by 0x13559C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25835== by 0x12E53D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25835== by 0x130F8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25835== by 0x130E2C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25835== by 0x1314C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25835== by 0x12C965: main (TestCellPopulationEventWriters.cpp:19) +==25835== +==25835== Open file descriptor 115: +==25835== +==25835== +==25835== Open file descriptor 112: +==25835== +==25835== +==25835== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationEventWriters_valgrind.txt +==25835== +==25835== +==25835== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25835== +==25835== +==25835== +==25835== HEAP SUMMARY: +==25835== in use at exit: 618,350 bytes in 8,239 blocks +==25835== total heap usage: 69,862 allocs, 61,623 frees, 1,350,932,411 bytes allocated +==25835== +==25835== LEAK SUMMARY: +==25835== definitely lost: 0 bytes in 0 blocks +==25835== indirectly lost: 0 bytes in 0 blocks +==25835== possibly lost: 0 bytes in 0 blocks +==25835== still reachable: 56 bytes in 3 blocks +==25835== suppressed: 618,294 bytes in 8,236 blocks +==25835== Reachable blocks (those to which a pointer was found) are not shown. +==25835== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25835== +==25835== For lists of detected and suppressed errors, rerun with: -s +==25835== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCellPopulationWriters_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellPopulationWriters_valgrind.txt new file mode 100644 index 000000000..6453b07c8 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellPopulationWriters_valgrind.txt @@ -0,0 +1,73 @@ +==25850== Memcheck, a memory error detector +==25850== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25850== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25850== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationWriters -malloc_debug -malloc_dump -memory_info +==25850== Parent PID: 23903 +==25850== +==25850== +==25850== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25850== Open file descriptor 12: +==25850== at 0xF83B07D: pipe (pipe.c:29) +==25850== by 0x196AD07D: ??? +==25850== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25850== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25850== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25850== by 0x10127D38: PetscInitialize (pinit.c:924) +==25850== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25850== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25850== by 0x146C30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25850== by 0x13F5FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25850== by 0x14252E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25850== by 0x1423CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25850== by 0x142A65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25850== by 0x13DA25: main (TestCellPopulationWriters.cpp:19) +==25850== +==25850== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25850== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==25850== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25850== by 0xF136822: ??? +==25850== by 0xF13696F: ??? +==25850== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25850== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25850== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25850== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25850== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25850== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25850== by 0x10127D38: PetscInitialize (pinit.c:924) +==25850== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25850== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25850== by 0x146C30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25850== by 0x13F5FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25850== by 0x14252E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25850== by 0x1423CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25850== by 0x142A65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25850== by 0x13DA25: main (TestCellPopulationWriters.cpp:19) +==25850== +==25850== Open file descriptor 115: +==25850== +==25850== +==25850== Open file descriptor 112: +==25850== +==25850== +==25850== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationWriters_valgrind.txt +==25850== +==25850== +==25850== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25850== +==25850== +==25850== +==25850== HEAP SUMMARY: +==25850== in use at exit: 618,350 bytes in 8,239 blocks +==25850== total heap usage: 157,624 allocs, 149,385 frees, 1,399,028,165 bytes allocated +==25850== +==25850== LEAK SUMMARY: +==25850== definitely lost: 0 bytes in 0 blocks +==25850== indirectly lost: 0 bytes in 0 blocks +==25850== possibly lost: 0 bytes in 0 blocks +==25850== still reachable: 56 bytes in 3 blocks +==25850== suppressed: 618,294 bytes in 8,236 blocks +==25850== Reachable blocks (those to which a pointer was found) are not shown. +==25850== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25850== +==25850== For lists of detected and suppressed errors, rerun with: -s +==25850== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCellProliferativeTypes_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellProliferativeTypes_valgrind.txt new file mode 100644 index 000000000..ab7dbe6e0 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellProliferativeTypes_valgrind.txt @@ -0,0 +1,73 @@ +==25293== Memcheck, a memory error detector +==25293== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25293== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25293== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellProliferativeTypes -malloc_debug -malloc_dump -memory_info +==25293== Parent PID: 23903 +==25293== +==25293== +==25293== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25293== Open file descriptor 12: +==25293== at 0xED5007D: pipe (pipe.c:29) +==25293== by 0x196AC07D: ??? +==25293== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25293== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25293== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25293== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25293== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25293== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25293== by 0x12CF1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25293== by 0x127E29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25293== by 0x12A848: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25293== by 0x12A6E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25293== by 0x12AD7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25293== by 0x126245: main (TestCellProliferativeTypes.cpp:19) +==25293== +==25293== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25293== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25293== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25293== by 0xD4D9822: ??? +==25293== by 0xD4D996F: ??? +==25293== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25293== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25293== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25293== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25293== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25293== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25293== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25293== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25293== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25293== by 0x12CF1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25293== by 0x127E29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25293== by 0x12A848: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25293== by 0x12A6E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25293== by 0x12AD7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25293== by 0x126245: main (TestCellProliferativeTypes.cpp:19) +==25293== +==25293== Open file descriptor 115: +==25293== +==25293== +==25293== Open file descriptor 112: +==25293== +==25293== +==25293== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellProliferativeTypes_valgrind.txt +==25293== +==25293== +==25293== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25293== +==25293== +==25293== +==25293== HEAP SUMMARY: +==25293== in use at exit: 618,350 bytes in 8,239 blocks +==25293== total heap usage: 53,388 allocs, 45,149 frees, 1,339,006,399 bytes allocated +==25293== +==25293== LEAK SUMMARY: +==25293== definitely lost: 0 bytes in 0 blocks +==25293== indirectly lost: 0 bytes in 0 blocks +==25293== possibly lost: 0 bytes in 0 blocks +==25293== still reachable: 56 bytes in 3 blocks +==25293== suppressed: 618,294 bytes in 8,236 blocks +==25293== Reachable blocks (those to which a pointer was found) are not shown. +==25293== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25293== +==25293== For lists of detected and suppressed errors, rerun with: -s +==25293== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestCellProperties_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellProperties_valgrind.txt new file mode 100644 index 000000000..1a05251aa --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellProperties_valgrind.txt @@ -0,0 +1,73 @@ +==43301== Memcheck, a memory error detector +==43301== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43301== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43301== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCellProperties -malloc_debug -malloc_dump -memory_info +==43301== Parent PID: 23903 +==43301== +==43301== +==43301== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43301== Open file descriptor 12: +==43301== at 0x882107D: pipe (pipe.c:29) +==43301== by 0x1432407D: ??? +==43301== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43301== by 0x9F1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43301== by 0x9EB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43301== by 0x8BACD38: PetscInitialize (pinit.c:924) +==43301== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43301== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43301== by 0x11C95A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43301== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43301== by 0x11A450: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43301== by 0x11A2F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43301== by 0x11A987: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43301== by 0x115CD5: main (TestCellProperties.cpp:19) +==43301== +==43301== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43301== at 0x8825A1C: __open_nocancel (open64_nocancel.c:39) +==43301== by 0x87A9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43301== by 0x8489822: ??? +==43301== by 0x848996F: ??? +==43301== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43301== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43301== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43301== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43301== by 0x9F1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43301== by 0x9EB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43301== by 0x8BACD38: PetscInitialize (pinit.c:924) +==43301== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43301== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43301== by 0x11C95A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43301== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43301== by 0x11A450: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43301== by 0x11A2F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43301== by 0x11A987: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43301== by 0x115CD5: main (TestCellProperties.cpp:19) +==43301== +==43301== Open file descriptor 115: +==43301== +==43301== +==43301== Open file descriptor 112: +==43301== +==43301== +==43301== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellProperties_valgrind.txt +==43301== +==43301== +==43301== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43301== +==43301== +==43301== +==43301== HEAP SUMMARY: +==43301== in use at exit: 618,263 bytes in 8,234 blocks +==43301== total heap usage: 1,086,636 allocs, 1,078,402 frees, 1,460,646,661 bytes allocated +==43301== +==43301== LEAK SUMMARY: +==43301== definitely lost: 0 bytes in 0 blocks +==43301== indirectly lost: 0 bytes in 0 blocks +==43301== possibly lost: 0 bytes in 0 blocks +==43301== still reachable: 24 bytes in 2 blocks +==43301== suppressed: 618,239 bytes in 8,232 blocks +==43301== Reachable blocks (those to which a pointer was found) are not shown. +==43301== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43301== +==43301== For lists of detected and suppressed errors, rerun with: -s +==43301== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestCellPropertyCollection_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellPropertyCollection_valgrind.txt new file mode 100644 index 000000000..3bfae7d38 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellPropertyCollection_valgrind.txt @@ -0,0 +1,73 @@ +==25294== Memcheck, a memory error detector +==25294== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25294== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25294== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPropertyCollection -malloc_debug -malloc_dump -memory_info +==25294== Parent PID: 23903 +==25294== +==25294== +==25294== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25294== Open file descriptor 12: +==25294== at 0xED5007D: pipe (pipe.c:29) +==25294== by 0x196AC07D: ??? +==25294== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25294== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25294== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25294== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25294== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25294== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25294== by 0x1546B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25294== by 0x14F129: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25294== by 0x151D20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25294== by 0x151BC0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25294== by 0x152257: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25294== by 0x14D545: main (TestCellPropertyCollection.cpp:19) +==25294== +==25294== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25294== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25294== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25294== by 0xD4D9822: ??? +==25294== by 0xD4D996F: ??? +==25294== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25294== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25294== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25294== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25294== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25294== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25294== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25294== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25294== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25294== by 0x1546B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25294== by 0x14F129: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25294== by 0x151D20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25294== by 0x151BC0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25294== by 0x152257: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25294== by 0x14D545: main (TestCellPropertyCollection.cpp:19) +==25294== +==25294== Open file descriptor 115: +==25294== +==25294== +==25294== Open file descriptor 112: +==25294== +==25294== +==25294== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPropertyCollection_valgrind.txt +==25294== +==25294== +==25294== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25294== +==25294== +==25294== +==25294== HEAP SUMMARY: +==25294== in use at exit: 618,350 bytes in 8,239 blocks +==25294== total heap usage: 53,257 allocs, 45,018 frees, 1,338,931,325 bytes allocated +==25294== +==25294== LEAK SUMMARY: +==25294== definitely lost: 0 bytes in 0 blocks +==25294== indirectly lost: 0 bytes in 0 blocks +==25294== possibly lost: 0 bytes in 0 blocks +==25294== still reachable: 56 bytes in 3 blocks +==25294== suppressed: 618,294 bytes in 8,236 blocks +==25294== Reachable blocks (those to which a pointer was found) are not shown. +==25294== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25294== +==25294== For lists of detected and suppressed errors, rerun with: -s +==25294== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCellPropertyRegistry_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellPropertyRegistry_valgrind.txt new file mode 100644 index 000000000..ea941a631 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellPropertyRegistry_valgrind.txt @@ -0,0 +1,73 @@ +==25302== Memcheck, a memory error detector +==25302== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25302== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25302== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPropertyRegistry -malloc_debug -malloc_dump -memory_info +==25302== Parent PID: 23903 +==25302== +==25302== +==25302== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25302== Open file descriptor 12: +==25302== at 0xED5007D: pipe (pipe.c:29) +==25302== by 0x196AC07D: ??? +==25302== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25302== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25302== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25302== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25302== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25302== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25302== by 0x15B69D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25302== by 0x156089: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25302== by 0x158D4C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25302== by 0x158BEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25302== by 0x159283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25302== by 0x1544A5: main (TestCellPropertyRegistry.cpp:19) +==25302== +==25302== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25302== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25302== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25302== by 0xD4D9822: ??? +==25302== by 0xD4D996F: ??? +==25302== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25302== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25302== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25302== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25302== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25302== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25302== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25302== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25302== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25302== by 0x15B69D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25302== by 0x156089: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25302== by 0x158D4C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25302== by 0x158BEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25302== by 0x159283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25302== by 0x1544A5: main (TestCellPropertyRegistry.cpp:19) +==25302== +==25302== Open file descriptor 115: +==25302== +==25302== +==25302== Open file descriptor 112: +==25302== +==25302== +==25302== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPropertyRegistry_valgrind.txt +==25302== +==25302== +==25302== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25302== +==25302== +==25302== +==25302== HEAP SUMMARY: +==25302== in use at exit: 618,350 bytes in 8,239 blocks +==25302== total heap usage: 53,292 allocs, 45,053 frees, 1,338,959,342 bytes allocated +==25302== +==25302== LEAK SUMMARY: +==25302== definitely lost: 0 bytes in 0 blocks +==25302== indirectly lost: 0 bytes in 0 blocks +==25302== possibly lost: 0 bytes in 0 blocks +==25302== still reachable: 56 bytes in 3 blocks +==25302== suppressed: 618,294 bytes in 8,236 blocks +==25302== Reachable blocks (those to which a pointer was found) are not shown. +==25302== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25302== +==25302== For lists of detected and suppressed errors, rerun with: -s +==25302== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCellSrn_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellSrn_valgrind.txt new file mode 100644 index 000000000..f34d7dc45 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellSrn_valgrind.txt @@ -0,0 +1,73 @@ +==25250== Memcheck, a memory error detector +==25250== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25250== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25250== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellSrn -malloc_debug -malloc_dump -memory_info +==25250== Parent PID: 23903 +==25250== +==25250== +==25250== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25250== Open file descriptor 12: +==25250== at 0xED0E07D: pipe (pipe.c:29) +==25250== by 0x196AC07D: ??? +==25250== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25250== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25250== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25250== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25250== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25250== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25250== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25250== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25250== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25250== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25250== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25250== by 0x113935: main (TestCellSrn.cpp:18) +==25250== +==25250== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25250== at 0xED12A1C: __open_nocancel (open64_nocancel.c:39) +==25250== by 0xEC96BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25250== by 0xE859822: ??? +==25250== by 0xE85996F: ??? +==25250== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25250== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25250== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25250== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25250== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25250== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25250== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25250== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25250== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25250== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25250== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25250== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25250== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25250== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25250== by 0x113935: main (TestCellSrn.cpp:18) +==25250== +==25250== Open file descriptor 115: +==25250== +==25250== +==25250== Open file descriptor 112: +==25250== +==25250== +==25250== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellSrn_valgrind.txt +==25250== +==25250== +==25250== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25250== +==25250== +==25250== +==25250== HEAP SUMMARY: +==25250== in use at exit: 618,414 bytes in 8,240 blocks +==25250== total heap usage: 63,351 allocs, 55,111 frees, 1,339,389,387 bytes allocated +==25250== +==25250== LEAK SUMMARY: +==25250== definitely lost: 0 bytes in 0 blocks +==25250== indirectly lost: 0 bytes in 0 blocks +==25250== possibly lost: 0 bytes in 0 blocks +==25250== still reachable: 120 bytes in 4 blocks +==25250== suppressed: 618,294 bytes in 8,236 blocks +==25250== Reachable blocks (those to which a pointer was found) are not shown. +==25250== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25250== +==25250== For lists of detected and suppressed errors, rerun with: -s +==25250== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCellWriters_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellWriters_valgrind.txt new file mode 100644 index 000000000..8c860dfd0 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellWriters_valgrind.txt @@ -0,0 +1,73 @@ +==25858== Memcheck, a memory error detector +==25858== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25858== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25858== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellWriters -malloc_debug -malloc_dump -memory_info +==25858== Parent PID: 23903 +==25858== +==25858== +==25858== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25858== Open file descriptor 12: +==25858== at 0xFB0E07D: pipe (pipe.c:29) +==25858== by 0x196AD07D: ??? +==25858== by 0x14CB94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25858== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25858== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25858== by 0x10127D38: PetscInitialize (pinit.c:924) +==25858== by 0xF3CD1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25858== by 0xF3CD227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25858== by 0x144A2A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25858== by 0x13CE5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25858== by 0x14024C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25858== by 0x1400EC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25858== by 0x140783: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25858== by 0x13B285: main (TestCellWriters.cpp:19) +==25858== +==25858== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25858== at 0xFB12A1C: __open_nocancel (open64_nocancel.c:39) +==25858== by 0xFA96BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25858== by 0xF407822: ??? +==25858== by 0xF40796F: ??? +==25858== by 0x14D5E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25858== by 0x14D5E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25858== by 0x14D14922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25858== by 0x14CB92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25858== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25858== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25858== by 0x10127D38: PetscInitialize (pinit.c:924) +==25858== by 0xF3CD1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25858== by 0xF3CD227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25858== by 0x144A2A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25858== by 0x13CE5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25858== by 0x14024C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25858== by 0x1400EC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25858== by 0x140783: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25858== by 0x13B285: main (TestCellWriters.cpp:19) +==25858== +==25858== Open file descriptor 115: +==25858== +==25858== +==25858== Open file descriptor 112: +==25858== +==25858== +==25858== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellWriters_valgrind.txt +==25858== +==25858== +==25858== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25858== +==25858== +==25858== +==25858== HEAP SUMMARY: +==25858== in use at exit: 618,350 bytes in 8,239 blocks +==25858== total heap usage: 69,785 allocs, 61,546 frees, 1,342,420,484 bytes allocated +==25858== +==25858== LEAK SUMMARY: +==25858== definitely lost: 0 bytes in 0 blocks +==25858== indirectly lost: 0 bytes in 0 blocks +==25858== possibly lost: 0 bytes in 0 blocks +==25858== still reachable: 56 bytes in 3 blocks +==25858== suppressed: 618,294 bytes in 8,236 blocks +==25858== Reachable blocks (those to which a pointer was found) are not shown. +==25858== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25858== +==25858== For lists of detected and suppressed errors, rerun with: -s +==25858== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCell_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCell_valgrind.txt new file mode 100644 index 000000000..e1b2d984f --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCell_valgrind.txt @@ -0,0 +1,73 @@ +==25249== Memcheck, a memory error detector +==25249== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25249== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25249== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCell -malloc_debug -malloc_dump -memory_info +==25249== Parent PID: 23903 +==25249== +==25249== +==25249== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25249== Open file descriptor 12: +==25249== at 0xED0E07D: pipe (pipe.c:29) +==25249== by 0x196AC07D: ??? +==25249== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25249== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25249== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25249== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25249== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25249== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25249== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25249== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25249== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25249== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25249== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25249== by 0x1222F5: main (TestCell.cpp:19) +==25249== +==25249== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25249== at 0xED12A1C: __open_nocancel (open64_nocancel.c:39) +==25249== by 0xEC96BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25249== by 0xE859822: ??? +==25249== by 0xE85996F: ??? +==25249== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25249== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25249== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25249== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25249== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25249== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25249== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25249== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25249== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25249== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25249== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25249== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25249== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25249== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25249== by 0x1222F5: main (TestCell.cpp:19) +==25249== +==25249== Open file descriptor 115: +==25249== +==25249== +==25249== Open file descriptor 112: +==25249== +==25249== +==25249== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCell_valgrind.txt +==25249== +==25249== +==25249== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25249== +==25249== +==25249== +==25249== HEAP SUMMARY: +==25249== in use at exit: 618,407 bytes in 8,236 blocks +==25249== total heap usage: 5,183,521 allocs, 5,175,285 frees, 1,819,191,251 bytes allocated +==25249== +==25249== LEAK SUMMARY: +==25249== definitely lost: 0 bytes in 0 blocks +==25249== indirectly lost: 0 bytes in 0 blocks +==25249== possibly lost: 0 bytes in 0 blocks +==25249== still reachable: 184 bytes in 4 blocks +==25249== suppressed: 618,223 bytes in 8,232 blocks +==25249== Reachable blocks (those to which a pointer was found) are not shown. +==25249== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25249== +==25249== For lists of detected and suppressed errors, rerun with: -s +==25249== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestCellsGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellsGenerator_valgrind.txt new file mode 100644 index 000000000..5637d6cbb --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==25315== Memcheck, a memory error detector +==25315== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25315== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25315== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellsGenerator -malloc_debug -malloc_dump -memory_info +==25315== Parent PID: 23903 +==25315== +==25315== +==25315== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25315== Open file descriptor 12: +==25315== at 0xF7F907D: pipe (pipe.c:29) +==25315== by 0x196AD07D: ??? +==25315== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25315== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25315== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25315== by 0x10127D38: PetscInitialize (pinit.c:924) +==25315== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25315== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25315== by 0x1248EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25315== by 0x11F90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25315== by 0x122428: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25315== by 0x1222C8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25315== by 0x12295F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25315== by 0x11DD35: main (TestCellsGenerator.cpp:19) +==25315== +==25315== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25315== at 0xF7FDA1C: __open_nocancel (open64_nocancel.c:39) +==25315== by 0xF781BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25315== by 0xF136822: ??? +==25315== by 0xF13696F: ??? +==25315== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25315== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25315== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25315== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25315== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25315== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25315== by 0x10127D38: PetscInitialize (pinit.c:924) +==25315== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25315== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25315== by 0x1248EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25315== by 0x11F90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25315== by 0x122428: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25315== by 0x1222C8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25315== by 0x12295F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25315== by 0x11DD35: main (TestCellsGenerator.cpp:19) +==25315== +==25315== Open file descriptor 115: +==25315== +==25315== +==25315== Open file descriptor 112: +==25315== +==25315== +==25315== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellsGenerator_valgrind.txt +==25315== +==25315== +==25315== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25315== +==25315== +==25315== +==25315== HEAP SUMMARY: +==25315== in use at exit: 618,414 bytes in 8,240 blocks +==25315== total heap usage: 69,420 allocs, 61,180 frees, 1,340,699,825 bytes allocated +==25315== +==25315== LEAK SUMMARY: +==25315== definitely lost: 0 bytes in 0 blocks +==25315== indirectly lost: 0 bytes in 0 blocks +==25315== possibly lost: 0 bytes in 0 blocks +==25315== still reachable: 120 bytes in 4 blocks +==25315== suppressed: 618,294 bytes in 8,236 blocks +==25315== Reachable blocks (those to which a pointer was found) are not shown. +==25315== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25315== +==25315== For lists of detected and suppressed errors, rerun with: -s +==25315== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCellwiseDataGradient_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCellwiseDataGradient_valgrind.txt new file mode 100644 index 000000000..aba737a84 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCellwiseDataGradient_valgrind.txt @@ -0,0 +1,73 @@ +==25857== Memcheck, a memory error detector +==25857== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25857== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25857== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellwiseDataGradient -malloc_debug -malloc_dump -memory_info +==25857== Parent PID: 23903 +==25857== +==25857== +==25857== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25857== Open file descriptor 12: +==25857== at 0xF7F907D: pipe (pipe.c:29) +==25857== by 0x196AD07D: ??? +==25857== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25857== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25857== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25857== by 0x10127D38: PetscInitialize (pinit.c:924) +==25857== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25857== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25857== by 0x11DD52: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25857== by 0x119493: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25857== by 0x11B86C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25857== by 0x11B767: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25857== by 0x11BD7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25857== by 0x117C95: main (TestCellwiseDataGradient.cpp:18) +==25857== +==25857== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25857== at 0xF7FDA1C: __open_nocancel (open64_nocancel.c:39) +==25857== by 0xF781BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25857== by 0xF136822: ??? +==25857== by 0xF13696F: ??? +==25857== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25857== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25857== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25857== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25857== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25857== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25857== by 0x10127D38: PetscInitialize (pinit.c:924) +==25857== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25857== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25857== by 0x11DD52: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25857== by 0x119493: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25857== by 0x11B86C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25857== by 0x11B767: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25857== by 0x11BD7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25857== by 0x117C95: main (TestCellwiseDataGradient.cpp:18) +==25857== +==25857== Open file descriptor 115: +==25857== +==25857== +==25857== Open file descriptor 112: +==25857== +==25857== +==25857== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellwiseDataGradient_valgrind.txt +==25857== +==25857== +==25857== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25857== +==25857== +==25857== +==25857== HEAP SUMMARY: +==25857== in use at exit: 618,350 bytes in 8,239 blocks +==25857== total heap usage: 418,861 allocs, 410,622 frees, 1,353,657,847 bytes allocated +==25857== +==25857== LEAK SUMMARY: +==25857== definitely lost: 0 bytes in 0 blocks +==25857== indirectly lost: 0 bytes in 0 blocks +==25857== possibly lost: 0 bytes in 0 blocks +==25857== still reachable: 56 bytes in 3 blocks +==25857== suppressed: 618,294 bytes in 8,236 blocks +==25857== Reachable blocks (those to which a pointer was found) are not shown. +==25857== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25857== +==25857== For lists of detected and suppressed errors, rerun with: -s +==25857== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCentreBasedDivisionRules_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCentreBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..add9dfa19 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCentreBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==25885== Memcheck, a memory error detector +==25885== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25885== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25885== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCentreBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==25885== Parent PID: 23903 +==25885== +==25885== +==25885== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25885== Open file descriptor 12: +==25885== at 0x10DD907D: pipe (pipe.c:29) +==25885== by 0x196AD07D: ??? +==25885== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25885== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25885== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25885== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25885== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25885== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25885== by 0x140B79: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25885== by 0x13BAA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25885== by 0x13E124: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25885== by 0x13E020: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25885== by 0x13E633: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25885== by 0x13A2A5: main (TestCentreBasedDivisionRules.cpp:18) +==25885== +==25885== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25885== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==25885== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25885== by 0xF136822: ??? +==25885== by 0xF13696F: ??? +==25885== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25885== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25885== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25885== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25885== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25885== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25885== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25885== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25885== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25885== by 0x140B79: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25885== by 0x13BAA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25885== by 0x13E124: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25885== by 0x13E020: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25885== by 0x13E633: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25885== by 0x13A2A5: main (TestCentreBasedDivisionRules.cpp:18) +==25885== +==25885== Open file descriptor 115: +==25885== +==25885== +==25885== Open file descriptor 112: +==25885== +==25885== +==25885== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCentreBasedDivisionRules_valgrind.txt +==25885== +==25885== +==25885== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25885== +==25885== +==25885== +==25885== HEAP SUMMARY: +==25885== in use at exit: 618,350 bytes in 8,239 blocks +==25885== total heap usage: 58,549 allocs, 50,310 frees, 1,339,872,832 bytes allocated +==25885== +==25885== LEAK SUMMARY: +==25885== definitely lost: 0 bytes in 0 blocks +==25885== indirectly lost: 0 bytes in 0 blocks +==25885== possibly lost: 0 bytes in 0 blocks +==25885== still reachable: 56 bytes in 3 blocks +==25885== suppressed: 618,294 bytes in 8,236 blocks +==25885== Reachable blocks (those to which a pointer was found) are not shown. +==25885== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25885== +==25885== For lists of detected and suppressed errors, rerun with: -s +==25885== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestChasteBuildInfo_valgrind.txt b/log-files/2024-09-07_08-54-51/TestChasteBuildInfo_valgrind.txt new file mode 100644 index 000000000..d4f979968 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestChasteBuildInfo_valgrind.txt @@ -0,0 +1,73 @@ +==23934== Memcheck, a memory error detector +==23934== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23934== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23934== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestChasteBuildInfo -malloc_debug -malloc_dump -memory_info +==23934== Parent PID: 23903 +==23934== +==23934== +==23934== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23934== Open file descriptor 12: +==23934== at 0x616907D: pipe (pipe.c:29) +==23934== by 0xAEA507D: ??? +==23934== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23934== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23934== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23934== by 0x4A23D38: PetscInitialize (pinit.c:924) +==23934== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23934== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23934== by 0x111D89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23934== by 0x10DC93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23934== by 0x10FE44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23934== by 0x10FD40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23934== by 0x110353: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23934== by 0x10C495: main (TestChasteBuildInfo.cpp:18) +==23934== +==23934== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23934== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==23934== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23934== by 0x5CB2822: ??? +==23934== by 0x5CB296F: ??? +==23934== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23934== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23934== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23934== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23934== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23934== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23934== by 0x4A23D38: PetscInitialize (pinit.c:924) +==23934== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23934== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23934== by 0x111D89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23934== by 0x10DC93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23934== by 0x10FE44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23934== by 0x10FD40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23934== by 0x110353: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23934== by 0x10C495: main (TestChasteBuildInfo.cpp:18) +==23934== +==23934== Open file descriptor 115: +==23934== +==23934== +==23934== Open file descriptor 112: +==23934== +==23934== +==23934== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChasteBuildInfo_valgrind.txt +==23934== +==23934== +==23934== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23934== +==23934== +==23934== +==23934== HEAP SUMMARY: +==23934== in use at exit: 617,838 bytes in 8,238 blocks +==23934== total heap usage: 44,924 allocs, 36,686 frees, 1,338,164,707 bytes allocated +==23934== +==23934== LEAK SUMMARY: +==23934== definitely lost: 0 bytes in 0 blocks +==23934== indirectly lost: 0 bytes in 0 blocks +==23934== possibly lost: 0 bytes in 0 blocks +==23934== still reachable: 24 bytes in 2 blocks +==23934== suppressed: 617,814 bytes in 8,236 blocks +==23934== Reachable blocks (those to which a pointer was found) are not shown. +==23934== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23934== +==23934== For lists of detected and suppressed errors, rerun with: -s +==23934== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestChastePoint_valgrind.txt b/log-files/2024-09-07_08-54-51/TestChastePoint_valgrind.txt new file mode 100644 index 000000000..a4cb6824b --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestChastePoint_valgrind.txt @@ -0,0 +1,73 @@ +==24285== Memcheck, a memory error detector +==24285== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24285== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24285== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestChastePoint -malloc_debug -malloc_dump -memory_info +==24285== Parent PID: 23903 +==24285== +==24285== +==24285== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24285== Open file descriptor 12: +==24285== at 0x7E0607D: pipe (pipe.c:29) +==24285== by 0x100C307D: ??? +==24285== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24285== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24285== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24285== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24285== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24285== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24285== by 0x1434C7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24285== by 0x13DFC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24285== by 0x140D84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24285== by 0x140C24: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24285== by 0x1412BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24285== by 0x13C3E5: main (TestChastePoint.cpp:19) +==24285== +==24285== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24285== at 0x7E0AA1C: __open_nocancel (open64_nocancel.c:39) +==24285== by 0x7D8EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24285== by 0x658F822: ??? +==24285== by 0x658F96F: ??? +==24285== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24285== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24285== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24285== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24285== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24285== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24285== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24285== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24285== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24285== by 0x1434C7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24285== by 0x13DFC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24285== by 0x140D84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24285== by 0x140C24: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24285== by 0x1412BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24285== by 0x13C3E5: main (TestChastePoint.cpp:19) +==24285== +==24285== Open file descriptor 115: +==24285== +==24285== +==24285== Open file descriptor 112: +==24285== +==24285== +==24285== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChastePoint_valgrind.txt +==24285== +==24285== +==24285== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24285== +==24285== +==24285== +==24285== HEAP SUMMARY: +==24285== in use at exit: 618,222 bytes in 8,238 blocks +==24285== total heap usage: 47,412 allocs, 39,174 frees, 1,338,407,991 bytes allocated +==24285== +==24285== LEAK SUMMARY: +==24285== definitely lost: 0 bytes in 0 blocks +==24285== indirectly lost: 0 bytes in 0 blocks +==24285== possibly lost: 0 bytes in 0 blocks +==24285== still reachable: 24 bytes in 2 blocks +==24285== suppressed: 618,198 bytes in 8,236 blocks +==24285== Reachable blocks (those to which a pointer was found) are not shown. +==24285== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24285== +==24285== For lists of detected and suppressed errors, rerun with: -s +==24285== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestChasteRegions_valgrind.txt b/log-files/2024-09-07_08-54-51/TestChasteRegions_valgrind.txt new file mode 100644 index 000000000..ef3fe506f --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestChasteRegions_valgrind.txt @@ -0,0 +1,73 @@ +==24286== Memcheck, a memory error detector +==24286== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24286== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24286== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestChasteRegions -malloc_debug -malloc_dump -memory_info +==24286== Parent PID: 23903 +==24286== +==24286== +==24286== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24286== Open file descriptor 12: +==24286== at 0x6A3807D: pipe (pipe.c:29) +==24286== by 0x100C307D: ??? +==24286== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24286== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24286== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24286== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==24286== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24286== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24286== by 0x127EAE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24286== by 0x122DBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24286== by 0x12589A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24286== by 0x12573A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24286== by 0x125DD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24286== by 0x1211E5: main (TestChasteRegions.cpp:19) +==24286== +==24286== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24286== at 0x6A3CA1C: __open_nocancel (open64_nocancel.c:39) +==24286== by 0x69C0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24286== by 0x658F822: ??? +==24286== by 0x658F96F: ??? +==24286== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24286== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24286== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24286== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24286== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24286== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24286== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==24286== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24286== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24286== by 0x127EAE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24286== by 0x122DBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24286== by 0x12589A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24286== by 0x12573A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24286== by 0x125DD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24286== by 0x1211E5: main (TestChasteRegions.cpp:19) +==24286== +==24286== Open file descriptor 115: +==24286== +==24286== +==24286== Open file descriptor 112: +==24286== +==24286== +==24286== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChasteRegions_valgrind.txt +==24286== +==24286== +==24286== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24286== +==24286== +==24286== +==24286== HEAP SUMMARY: +==24286== in use at exit: 618,222 bytes in 8,238 blocks +==24286== total heap usage: 47,507 allocs, 39,269 frees, 1,338,414,913 bytes allocated +==24286== +==24286== LEAK SUMMARY: +==24286== definitely lost: 0 bytes in 0 blocks +==24286== indirectly lost: 0 bytes in 0 blocks +==24286== possibly lost: 0 bytes in 0 blocks +==24286== still reachable: 24 bytes in 2 blocks +==24286== suppressed: 618,198 bytes in 8,236 blocks +==24286== Reachable blocks (those to which a pointer was found) are not shown. +==24286== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24286== +==24286== For lists of detected and suppressed errors, rerun with: -s +==24286== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-09-07_08-54-51/TestChebyshevIteration_valgrind.txt b/log-files/2024-09-07_08-54-51/TestChebyshevIteration_valgrind.txt new file mode 100644 index 000000000..3d2731443 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestChebyshevIteration_valgrind.txt @@ -0,0 +1,73 @@ +==24207== Memcheck, a memory error detector +==24207== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24207== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24207== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestChebyshevIteration -malloc_debug -malloc_dump -memory_info +==24207== Parent PID: 23903 +==24207== +==24207== +==24207== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24207== Open file descriptor 12: +==24207== at 0x60C107D: pipe (pipe.c:29) +==24207== by 0xAF3907D: ??? +==24207== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24207== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24207== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24207== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24207== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24207== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24207== by 0x115156: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24207== by 0x11068D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24207== by 0x112F8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24207== by 0x112E2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24207== by 0x1134C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24207== by 0x10EAB5: main (TestChebyshevIteration.cpp:19) +==24207== +==24207== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24207== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24207== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24207== by 0x5D41822: ??? +==24207== by 0x5D4196F: ??? +==24207== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24207== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24207== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24207== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24207== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24207== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24207== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24207== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24207== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24207== by 0x115156: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24207== by 0x11068D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24207== by 0x112F8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24207== by 0x112E2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24207== by 0x1134C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24207== by 0x10EAB5: main (TestChebyshevIteration.cpp:19) +==24207== +==24207== Open file descriptor 115: +==24207== +==24207== +==24207== Open file descriptor 112: +==24207== +==24207== +==24207== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChebyshevIteration_valgrind.txt +==24207== +==24207== +==24207== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24207== +==24207== +==24207== +==24207== HEAP SUMMARY: +==24207== in use at exit: 617,854 bytes in 8,238 blocks +==24207== total heap usage: 49,164 allocs, 40,926 frees, 1,357,739,903 bytes allocated +==24207== +==24207== LEAK SUMMARY: +==24207== definitely lost: 0 bytes in 0 blocks +==24207== indirectly lost: 0 bytes in 0 blocks +==24207== possibly lost: 0 bytes in 0 blocks +==24207== still reachable: 24 bytes in 2 blocks +==24207== suppressed: 617,830 bytes in 8,236 blocks +==24207== Reachable blocks (those to which a pointer was found) are not shown. +==24207== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24207== +==24207== For lists of detected and suppressed errors, rerun with: -s +==24207== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestCheckpointing_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCheckpointing_valgrind.txt new file mode 100644 index 000000000..fd2e473f0 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCheckpointing_valgrind.txt @@ -0,0 +1,73 @@ +==43441== Memcheck, a memory error detector +==43441== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43441== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43441== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCheckpointing -malloc_debug -malloc_dump -memory_info +==43441== Parent PID: 23903 +==43441== +==43441== +==43441== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43441== Open file descriptor 12: +==43441== at 0xA7C307D: pipe (pipe.c:29) +==43441== by 0x1432407D: ??? +==43441== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43441== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43441== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43441== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==43441== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43441== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43441== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43441== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43441== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43441== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43441== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43441== by 0x11CCF5: main (TestCheckpointing.cpp:18) +==43441== +==43441== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43441== at 0xA7C7A1C: __open_nocancel (open64_nocancel.c:39) +==43441== by 0xA74BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43441== by 0xA0E4822: ??? +==43441== by 0xA0E496F: ??? +==43441== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43441== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43441== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43441== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43441== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43441== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43441== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==43441== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43441== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43441== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43441== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43441== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43441== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43441== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43441== by 0x11CCF5: main (TestCheckpointing.cpp:18) +==43441== +==43441== Open file descriptor 115: +==43441== +==43441== +==43441== Open file descriptor 112: +==43441== +==43441== +==43441== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCheckpointing_valgrind.txt +==43441== +==43441== +==43441== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43441== +==43441== +==43441== +==43441== HEAP SUMMARY: +==43441== in use at exit: 618,743 bytes in 8,244 blocks +==43441== total heap usage: 834,309 allocs, 826,065 frees, 1,443,021,774 bytes allocated +==43441== +==43441== LEAK SUMMARY: +==43441== definitely lost: 0 bytes in 0 blocks +==43441== indirectly lost: 0 bytes in 0 blocks +==43441== possibly lost: 0 bytes in 0 blocks +==43441== still reachable: 24 bytes in 2 blocks +==43441== suppressed: 618,719 bytes in 8,242 blocks +==43441== Reachable blocks (those to which a pointer was found) are not shown. +==43441== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43441== +==43441== For lists of detected and suppressed errors, rerun with: -s +==43441== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 60 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestCitations_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCitations_valgrind.txt new file mode 100644 index 000000000..3aec5cd09 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCitations_valgrind.txt @@ -0,0 +1,79 @@ +==23906== Memcheck, a memory error detector +==23906== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23906== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23906== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCitations -malloc_debug -malloc_dump -memory_info +==23906== Parent PID: 23903 +==23906== +==23906== +==23906== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23906== Open file descriptor 12: +==23906== at 0x4CB207D: pipe (pipe.c:29) +==23906== by 0xAEA507D: ??? +==23906== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23906== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23906== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23906== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23906== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23906== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23906== by 0x11862B: TestCitations::TestChasteCitation() (TestCitations.hpp:72) +==23906== by 0x118ED8: TestDescription_TestCitations_TestChasteCitation::runTest() (TestCitations.cpp:30) +==23906== by 0x111C4A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==23906== by 0x114E74: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==23906== by 0x114D59: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==23906== by 0x114BFF: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==23906== by 0x114AC1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23906== by 0x1150D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23906== by 0x110C15: main (TestCitations.cpp:18) +==23906== +==23906== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23906== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==23906== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23906== by 0x4934822: ??? +==23906== by 0x493496F: ??? +==23906== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23906== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23906== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23906== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23906== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23906== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23906== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23906== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23906== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23906== by 0x11862B: TestCitations::TestChasteCitation() (TestCitations.hpp:72) +==23906== by 0x118ED8: TestDescription_TestCitations_TestChasteCitation::runTest() (TestCitations.cpp:30) +==23906== by 0x111C4A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==23906== by 0x114E74: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==23906== by 0x114D59: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==23906== by 0x114BFF: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==23906== by 0x114AC1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23906== by 0x1150D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23906== by 0x110C15: main (TestCitations.cpp:18) +==23906== +==23906== Open file descriptor 115: +==23906== +==23906== +==23906== Open file descriptor 112: +==23906== +==23906== +==23906== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCitations_valgrind.txt +==23906== +==23906== +==23906== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23906== +==23906== +==23906== +==23906== HEAP SUMMARY: +==23906== in use at exit: 617,838 bytes in 8,238 blocks +==23906== total heap usage: 45,217 allocs, 36,979 frees, 1,338,328,548 bytes allocated +==23906== +==23906== LEAK SUMMARY: +==23906== definitely lost: 0 bytes in 0 blocks +==23906== indirectly lost: 0 bytes in 0 blocks +==23906== possibly lost: 0 bytes in 0 blocks +==23906== still reachable: 24 bytes in 2 blocks +==23906== suppressed: 617,814 bytes in 8,236 blocks +==23906== Reachable blocks (those to which a pointer was found) are not shown. +==23906== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23906== +==23906== For lists of detected and suppressed errors, rerun with: -s +==23906== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestCodegenPresent_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCodegenPresent_valgrind.txt new file mode 100644 index 000000000..5cd8bd83f --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCodegenPresent_valgrind.txt @@ -0,0 +1,73 @@ +==42415== Memcheck, a memory error detector +==42415== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42415== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42415== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCodegenPresent -malloc_debug -malloc_dump -memory_info +==42415== Parent PID: 23903 +==42415== +==42415== +==42415== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42415== Open file descriptor 12: +==42415== at 0x616907D: pipe (pipe.c:29) +==42415== by 0xAEA507D: ??? +==42415== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42415== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42415== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42415== by 0x4A23D38: PetscInitialize (pinit.c:924) +==42415== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42415== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42415== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42415== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42415== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42415== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42415== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42415== by 0x10C695: main (TestCodegenPresent.cpp:18) +==42415== +==42415== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42415== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==42415== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42415== by 0x5CB2822: ??? +==42415== by 0x5CB296F: ??? +==42415== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42415== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42415== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42415== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42415== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42415== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42415== by 0x4A23D38: PetscInitialize (pinit.c:924) +==42415== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42415== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42415== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42415== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42415== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42415== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42415== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42415== by 0x10C695: main (TestCodegenPresent.cpp:18) +==42415== +==42415== Open file descriptor 115: +==42415== +==42415== +==42415== Open file descriptor 112: +==42415== +==42415== +==42415== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCodegenPresent_valgrind.txt +==42415== +==42415== +==42415== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42415== +==42415== +==42415== +==42415== HEAP SUMMARY: +==42415== in use at exit: 617,838 bytes in 8,238 blocks +==42415== total heap usage: 44,923 allocs, 36,685 frees, 1,338,160,515 bytes allocated +==42415== +==42415== LEAK SUMMARY: +==42415== definitely lost: 0 bytes in 0 blocks +==42415== indirectly lost: 0 bytes in 0 blocks +==42415== possibly lost: 0 bytes in 0 blocks +==42415== still reachable: 24 bytes in 2 blocks +==42415== suppressed: 617,814 bytes in 8,236 blocks +==42415== Reachable blocks (those to which a pointer was found) are not shown. +==42415== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42415== +==42415== For lists of detected and suppressed errors, rerun with: -s +==42415== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestColumnDataReaderWriter_valgrind.txt b/log-files/2024-09-07_08-54-51/TestColumnDataReaderWriter_valgrind.txt new file mode 100644 index 000000000..48001af67 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestColumnDataReaderWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24154== Memcheck, a memory error detector +==24154== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24154== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24154== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestColumnDataReaderWriter -malloc_debug -malloc_dump -memory_info +==24154== Parent PID: 23903 +==24154== +==24154== +==24154== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24154== Open file descriptor 12: +==24154== at 0x61DC07D: pipe (pipe.c:29) +==24154== by 0xAF1807D: ??? +==24154== by 0x8A2F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24154== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24154== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24154== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24154== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24154== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24154== by 0x11A4DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24154== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24154== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24154== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24154== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24154== by 0x113AF5: main (TestColumnDataReaderWriter.cpp:19) +==24154== +==24154== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24154== at 0x61E0A1C: __open_nocancel (open64_nocancel.c:39) +==24154== by 0x6164BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24154== by 0x5D25822: ??? +==24154== by 0x5D2596F: ??? +==24154== by 0x8AD66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24154== by 0x8AD6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24154== by 0x8A8C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24154== by 0x8A2F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24154== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24154== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24154== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24154== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24154== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24154== by 0x11A4DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24154== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24154== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24154== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24154== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24154== by 0x113AF5: main (TestColumnDataReaderWriter.cpp:19) +==24154== +==24154== Open file descriptor 115: +==24154== +==24154== +==24154== Open file descriptor 112: +==24154== +==24154== +==24154== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestColumnDataReaderWriter_valgrind.txt +==24154== +==24154== +==24154== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24154== +==24154== +==24154== +==24154== HEAP SUMMARY: +==24154== in use at exit: 617,854 bytes in 8,238 blocks +==24154== total heap usage: 61,709 allocs, 53,471 frees, 1,341,174,408 bytes allocated +==24154== +==24154== LEAK SUMMARY: +==24154== definitely lost: 0 bytes in 0 blocks +==24154== indirectly lost: 0 bytes in 0 blocks +==24154== possibly lost: 0 bytes in 0 blocks +==24154== still reachable: 24 bytes in 2 blocks +==24154== suppressed: 617,830 bytes in 8,236 blocks +==24154== Reachable blocks (those to which a pointer was found) are not shown. +==24154== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24154== +==24154== For lists of detected and suppressed errors, rerun with: -s +==24154== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestCombinedOdeSystem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCombinedOdeSystem_valgrind.txt new file mode 100644 index 000000000..fe9dcc266 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCombinedOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24848== Memcheck, a memory error detector +==24848== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24848== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24848== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestCombinedOdeSystem -malloc_debug -malloc_dump -memory_info +==24848== Parent PID: 23903 +==24848== +==24848== +==24848== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24848== Open file descriptor 12: +==24848== at 0x4F1007D: pipe (pipe.c:29) +==24848== by 0xB1E607D: ??? +==24848== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24848== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24848== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24848== by 0x5308D38: PetscInitialize (pinit.c:924) +==24848== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24848== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24848== by 0x11FE4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24848== by 0x11AEED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24848== by 0x11DACC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24848== by 0x11D9C7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24848== by 0x11DFDB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24848== by 0x118A75: main (TestCombinedOdeSystem.cpp:18) +==24848== +==24848== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24848== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39) +==24848== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24848== by 0x4B76822: ??? +==24848== by 0x4B7696F: ??? +==24848== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24848== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24848== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24848== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24848== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24848== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24848== by 0x5308D38: PetscInitialize (pinit.c:924) +==24848== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24848== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24848== by 0x11FE4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24848== by 0x11AEED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24848== by 0x11DACC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24848== by 0x11D9C7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24848== by 0x11DFDB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24848== by 0x118A75: main (TestCombinedOdeSystem.cpp:18) +==24848== +==24848== Open file descriptor 115: +==24848== +==24848== +==24848== Open file descriptor 112: +==24848== +==24848== +==24848== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCombinedOdeSystem_valgrind.txt +==24848== +==24848== +==24848== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24848== +==24848== +==24848== +==24848== HEAP SUMMARY: +==24848== in use at exit: 617,902 bytes in 8,238 blocks +==24848== total heap usage: 46,090 allocs, 37,852 frees, 1,338,258,914 bytes allocated +==24848== +==24848== LEAK SUMMARY: +==24848== definitely lost: 0 bytes in 0 blocks +==24848== indirectly lost: 0 bytes in 0 blocks +==24848== possibly lost: 0 bytes in 0 blocks +==24848== still reachable: 24 bytes in 2 blocks +==24848== suppressed: 617,878 bytes in 8,236 blocks +==24848== Reachable blocks (those to which a pointer was found) are not shown. +==24848== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24848== +==24848== For lists of detected and suppressed errors, rerun with: -s +==24848== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestCommandLineArgumentsTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCommandLineArgumentsTutorial_valgrind.txt new file mode 100644 index 000000000..bc2c3e9aa --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCommandLineArgumentsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==24153== Memcheck, a memory error detector +==24153== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24153== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24153== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCommandLineArgumentsTutorial -malloc_debug -malloc_dump -memory_info +==24153== Parent PID: 23903 +==24153== +==24153== +==24153== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24153== Open file descriptor 12: +==24153== at 0x4CB207D: pipe (pipe.c:29) +==24153== by 0xAEA507D: ??? +==24153== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24153== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24153== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24153== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24153== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24153== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24153== by 0x112FDA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24153== by 0x10EE73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24153== by 0x111094: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24153== by 0x110F90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24153== by 0x1115A3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24153== by 0x10D675: main (TestCommandLineArgumentsTutorial.cpp:18) +==24153== +==24153== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24153== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24153== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24153== by 0x4934822: ??? +==24153== by 0x493496F: ??? +==24153== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24153== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24153== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24153== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24153== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24153== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24153== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24153== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24153== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24153== by 0x112FDA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24153== by 0x10EE73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24153== by 0x111094: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24153== by 0x110F90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24153== by 0x1115A3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24153== by 0x10D675: main (TestCommandLineArgumentsTutorial.cpp:18) +==24153== +==24153== Open file descriptor 115: +==24153== +==24153== +==24153== Open file descriptor 112: +==24153== +==24153== +==24153== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCommandLineArgumentsTutorial_valgrind.txt +==24153== +==24153== +==24153== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24153== +==24153== +==24153== +==24153== HEAP SUMMARY: +==24153== in use at exit: 617,838 bytes in 8,238 blocks +==24153== total heap usage: 44,942 allocs, 36,704 frees, 1,338,162,630 bytes allocated +==24153== +==24153== LEAK SUMMARY: +==24153== definitely lost: 0 bytes in 0 blocks +==24153== indirectly lost: 0 bytes in 0 blocks +==24153== possibly lost: 0 bytes in 0 blocks +==24153== still reachable: 24 bytes in 2 blocks +==24153== suppressed: 617,814 bytes in 8,236 blocks +==24153== Reachable blocks (those to which a pointer was found) are not shown. +==24153== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24153== +==24153== For lists of detected and suppressed errors, rerun with: -s +==24153== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestCommandLineArguments_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCommandLineArguments_valgrind.txt new file mode 100644 index 000000000..6634213c5 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCommandLineArguments_valgrind.txt @@ -0,0 +1,73 @@ +==23907== Memcheck, a memory error detector +==23907== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23907== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23907== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCommandLineArguments -malloc_debug -malloc_dump -memory_info +==23907== Parent PID: 23903 +==23907== +==23907== +==23907== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23907== Open file descriptor 12: +==23907== at 0x4CB207D: pipe (pipe.c:29) +==23907== by 0xAEA507D: ??? +==23907== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23907== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23907== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23907== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23907== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23907== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23907== by 0x115FD0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23907== by 0x11158D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23907== by 0x114072: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23907== by 0x113F12: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23907== by 0x1145A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23907== by 0x10F9B5: main (TestCommandLineArguments.cpp:19) +==23907== +==23907== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23907== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==23907== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23907== by 0x4934822: ??? +==23907== by 0x493496F: ??? +==23907== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23907== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23907== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23907== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23907== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23907== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23907== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23907== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23907== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23907== by 0x115FD0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23907== by 0x11158D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23907== by 0x114072: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23907== by 0x113F12: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23907== by 0x1145A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23907== by 0x10F9B5: main (TestCommandLineArguments.cpp:19) +==23907== +==23907== Open file descriptor 115: +==23907== +==23907== +==23907== Open file descriptor 112: +==23907== +==23907== +==23907== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCommandLineArguments_valgrind.txt +==23907== +==23907== +==23907== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23907== +==23907== +==23907== +==23907== HEAP SUMMARY: +==23907== in use at exit: 617,838 bytes in 8,238 blocks +==23907== total heap usage: 45,103 allocs, 36,865 frees, 1,338,179,914 bytes allocated +==23907== +==23907== LEAK SUMMARY: +==23907== definitely lost: 0 bytes in 0 blocks +==23907== indirectly lost: 0 bytes in 0 blocks +==23907== possibly lost: 0 bytes in 0 blocks +==23907== still reachable: 24 bytes in 2 blocks +==23907== suppressed: 617,814 bytes in 8,236 blocks +==23907== Reachable blocks (those to which a pointer was found) are not shown. +==23907== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23907== +==23907== For lists of detected and suppressed errors, rerun with: -s +==23907== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestCompressibleNonlinearElasticitySolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCompressibleNonlinearElasticitySolver_valgrind.txt new file mode 100644 index 000000000..a910ca4b0 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCompressibleNonlinearElasticitySolver_valgrind.txt @@ -0,0 +1,73 @@ +==25152== Memcheck, a memory error detector +==25152== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25152== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25152== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestCompressibleNonlinearElasticitySolver -malloc_debug -malloc_dump -memory_info +==25152== Parent PID: 23903 +==25152== +==25152== +==25152== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25152== Open file descriptor 12: +==25152== at 0x879E07D: pipe (pipe.c:29) +==25152== by 0x106D807D: ??? +==25152== by 0xBF914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25152== by 0x7FBF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25152== by 0x7F58D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25152== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25152== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25152== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25152== by 0x169A90: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25152== by 0x163FD1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25152== by 0x16757C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25152== by 0x16741C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25152== by 0x167AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25152== by 0x161595: main (TestCompressibleNonlinearElasticitySolver.cpp:19) +==25152== +==25152== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25152== at 0x87A2A1C: __open_nocancel (open64_nocancel.c:39) +==25152== by 0x8726BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25152== by 0x7EBB822: ??? +==25152== by 0x7EBB96F: ??? +==25152== by 0xC0366DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25152== by 0xC036938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25152== by 0xBFEC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25152== by 0xBF912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25152== by 0x7FBF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25152== by 0x7F58D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25152== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25152== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25152== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25152== by 0x169A90: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25152== by 0x163FD1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25152== by 0x16757C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25152== by 0x16741C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25152== by 0x167AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25152== by 0x161595: main (TestCompressibleNonlinearElasticitySolver.cpp:19) +==25152== +==25152== Open file descriptor 115: +==25152== +==25152== +==25152== Open file descriptor 112: +==25152== +==25152== +==25152== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCompressibleNonlinearElasticitySolver_valgrind.txt +==25152== +==25152== +==25152== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25152== +==25152== +==25152== +==25152== HEAP SUMMARY: +==25152== in use at exit: 618,270 bytes in 8,238 blocks +==25152== total heap usage: 309,154 allocs, 300,916 frees, 1,381,169,010 bytes allocated +==25152== +==25152== LEAK SUMMARY: +==25152== definitely lost: 0 bytes in 0 blocks +==25152== indirectly lost: 0 bytes in 0 blocks +==25152== possibly lost: 0 bytes in 0 blocks +==25152== still reachable: 24 bytes in 2 blocks +==25152== suppressed: 618,246 bytes in 8,236 blocks +==25152== Reachable blocks (those to which a pointer was found) are not shown. +==25152== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25152== +==25152== For lists of detected and suppressed errors, rerun with: -s +==25152== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestConductivityTensors_valgrind.txt b/log-files/2024-09-07_08-54-51/TestConductivityTensors_valgrind.txt new file mode 100644 index 000000000..1be7f96f7 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestConductivityTensors_valgrind.txt @@ -0,0 +1,73 @@ +==43457== Memcheck, a memory error detector +==43457== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43457== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43457== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestConductivityTensors -malloc_debug -malloc_dump -memory_info +==43457== Parent PID: 23903 +==43457== +==43457== +==43457== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43457== Open file descriptor 12: +==43457== at 0xA68407D: pipe (pipe.c:29) +==43457== by 0x1432407D: ??? +==43457== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43457== by 0xBD7D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43457== by 0xBD16D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43457== by 0xAA0DD38: PetscInitialize (pinit.c:924) +==43457== by 0x9E841D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43457== by 0x9E84227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43457== by 0x1288D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43457== by 0x123B0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43457== by 0x12665E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43457== by 0x1264FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43457== by 0x126B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43457== by 0x121F35: main (TestConductivityTensors.cpp:19) +==43457== +==43457== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43457== at 0xA688A1C: __open_nocancel (open64_nocancel.c:39) +==43457== by 0xA60CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43457== by 0x9EBE822: ??? +==43457== by 0x9EBE96F: ??? +==43457== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43457== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43457== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43457== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43457== by 0xBD7D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43457== by 0xBD16D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43457== by 0xAA0DD38: PetscInitialize (pinit.c:924) +==43457== by 0x9E841D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43457== by 0x9E84227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43457== by 0x1288D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43457== by 0x123B0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43457== by 0x12665E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43457== by 0x1264FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43457== by 0x126B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43457== by 0x121F35: main (TestConductivityTensors.cpp:19) +==43457== +==43457== Open file descriptor 115: +==43457== +==43457== +==43457== Open file descriptor 112: +==43457== +==43457== +==43457== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConductivityTensors_valgrind.txt +==43457== +==43457== +==43457== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43457== +==43457== +==43457== +==43457== HEAP SUMMARY: +==43457== in use at exit: 618,334 bytes in 8,238 blocks +==43457== total heap usage: 58,722 allocs, 50,484 frees, 1,339,525,799 bytes allocated +==43457== +==43457== LEAK SUMMARY: +==43457== definitely lost: 0 bytes in 0 blocks +==43457== indirectly lost: 0 bytes in 0 blocks +==43457== possibly lost: 0 bytes in 0 blocks +==43457== still reachable: 24 bytes in 2 blocks +==43457== suppressed: 618,310 bytes in 8,236 blocks +==43457== Reachable blocks (those to which a pointer was found) are not shown. +==43457== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43457== +==43457== For lists of detected and suppressed errors, rerun with: -s +==43457== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestConstBoundaryCondition_valgrind.txt b/log-files/2024-09-07_08-54-51/TestConstBoundaryCondition_valgrind.txt new file mode 100644 index 000000000..542e5bf64 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestConstBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==25084== Memcheck, a memory error detector +==25084== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25084== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25084== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestConstBoundaryCondition -malloc_debug -malloc_dump -memory_info +==25084== Parent PID: 23903 +==25084== +==25084== +==25084== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25084== Open file descriptor 12: +==25084== at 0x6CAC07D: pipe (pipe.c:29) +==25084== by 0x104D507D: ??? +==25084== by 0xC31D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25084== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25084== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25084== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25084== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25084== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25084== by 0x111DEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25084== by 0x10DBB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25084== by 0x10FEA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25084== by 0x10FD9D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25084== by 0x1103B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25084== by 0x10C3B5: main (TestConstBoundaryCondition.cpp:18) +==25084== +==25084== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25084== at 0x6CB0A1C: __open_nocancel (open64_nocancel.c:39) +==25084== by 0x6C34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25084== by 0x692E822: ??? +==25084== by 0x692E96F: ??? +==25084== by 0xC3C26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25084== by 0xC3C2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25084== by 0xC378922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25084== by 0xC31D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25084== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25084== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25084== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25084== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25084== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25084== by 0x111DEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25084== by 0x10DBB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25084== by 0x10FEA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25084== by 0x10FD9D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25084== by 0x1103B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25084== by 0x10C3B5: main (TestConstBoundaryCondition.cpp:18) +==25084== +==25084== Open file descriptor 115: +==25084== +==25084== +==25084== Open file descriptor 112: +==25084== +==25084== +==25084== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConstBoundaryCondition_valgrind.txt +==25084== +==25084== +==25084== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25084== +==25084== +==25084== +==25084== HEAP SUMMARY: +==25084== in use at exit: 618,254 bytes in 8,238 blocks +==25084== total heap usage: 47,334 allocs, 39,096 frees, 1,338,384,729 bytes allocated +==25084== +==25084== LEAK SUMMARY: +==25084== definitely lost: 0 bytes in 0 blocks +==25084== indirectly lost: 0 bytes in 0 blocks +==25084== possibly lost: 0 bytes in 0 blocks +==25084== still reachable: 24 bytes in 2 blocks +==25084== suppressed: 618,230 bytes in 8,236 blocks +==25084== Reachable blocks (those to which a pointer was found) are not shown. +==25084== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25084== +==25084== For lists of detected and suppressed errors, rerun with: -s +==25084== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt b/log-files/2024-09-07_08-54-51/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt new file mode 100644 index 000000000..0418e7bfc --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25153== Memcheck, a memory error detector +==25153== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25153== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25153== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestContinuumMechanicsNeumannBcsAssembler -malloc_debug -malloc_dump -memory_info +==25153== Parent PID: 23903 +==25153== +==25153== +==25153== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25153== Open file descriptor 12: +==25153== at 0x866707D: pipe (pipe.c:29) +==25153== by 0x106D807D: ??? +==25153== by 0xC4EC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25153== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25153== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25153== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25153== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25153== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25153== by 0x132A16: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25153== by 0x12DD0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25153== by 0x130686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25153== by 0x130526: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25153== by 0x130BBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25153== by 0x12C135: main (TestContinuumMechanicsNeumannBcsAssembler.cpp:19) +==25153== +==25153== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25153== at 0x866BA1C: __open_nocancel (open64_nocancel.c:39) +==25153== by 0x85EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25153== by 0x7EBB822: ??? +==25153== by 0x7EBB96F: ??? +==25153== by 0xC5916DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25153== by 0xC591938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25153== by 0xC547922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25153== by 0xC4EC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25153== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25153== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25153== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25153== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25153== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25153== by 0x132A16: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25153== by 0x12DD0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25153== by 0x130686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25153== by 0x130526: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25153== by 0x130BBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25153== by 0x12C135: main (TestContinuumMechanicsNeumannBcsAssembler.cpp:19) +==25153== +==25153== Open file descriptor 115: +==25153== +==25153== +==25153== Open file descriptor 112: +==25153== +==25153== +==25153== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt +==25153== +==25153== +==25153== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25153== +==25153== +==25153== +==25153== HEAP SUMMARY: +==25153== in use at exit: 618,270 bytes in 8,238 blocks +==25153== total heap usage: 48,482 allocs, 40,244 frees, 1,338,692,211 bytes allocated +==25153== +==25153== LEAK SUMMARY: +==25153== definitely lost: 0 bytes in 0 blocks +==25153== indirectly lost: 0 bytes in 0 blocks +==25153== possibly lost: 0 bytes in 0 blocks +==25153== still reachable: 24 bytes in 2 blocks +==25153== suppressed: 618,246 bytes in 8,236 blocks +==25153== Reachable blocks (those to which a pointer was found) are not shown. +==25153== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25153== +==25153== For lists of detected and suppressed errors, rerun with: -s +==25153== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestContractionModels_valgrind.txt b/log-files/2024-09-07_08-54-51/TestContractionModels_valgrind.txt new file mode 100644 index 000000000..5943dd20d --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestContractionModels_valgrind.txt @@ -0,0 +1,73 @@ +==43054== Memcheck, a memory error detector +==43054== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43054== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43054== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestContractionModels -malloc_debug -malloc_dump -memory_info +==43054== Parent PID: 23903 +==43054== +==43054== +==43054== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43054== Open file descriptor 12: +==43054== at 0x9DBF07D: pipe (pipe.c:29) +==43054== by 0x1432407D: ??? +==43054== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43054== by 0x990B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43054== by 0x98A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43054== by 0x8578D38: PetscInitialize (pinit.c:924) +==43054== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43054== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43054== by 0x12263F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43054== by 0x11CBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43054== by 0x11F788: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43054== by 0x11F628: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43054== by 0x11FCBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43054== by 0x11AE95: main (TestContractionModels.cpp:19) +==43054== +==43054== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43054== at 0x9DC3A1C: __open_nocancel (open64_nocancel.c:39) +==43054== by 0x9D47BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43054== by 0x9807822: ??? +==43054== by 0x980796F: ??? +==43054== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43054== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43054== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43054== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43054== by 0x990B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43054== by 0x98A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43054== by 0x8578D38: PetscInitialize (pinit.c:924) +==43054== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43054== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43054== by 0x12263F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43054== by 0x11CBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43054== by 0x11F788: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43054== by 0x11F628: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43054== by 0x11FCBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43054== by 0x11AE95: main (TestContractionModels.cpp:19) +==43054== +==43054== Open file descriptor 115: +==43054== +==43054== +==43054== Open file descriptor 112: +==43054== +==43054== +==43054== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestContractionModels_valgrind.txt +==43054== +==43054== +==43054== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43054== +==43054== +==43054== +==43054== HEAP SUMMARY: +==43054== in use at exit: 618,263 bytes in 8,234 blocks +==43054== total heap usage: 4,643,676 allocs, 4,635,442 frees, 1,548,568,011 bytes allocated +==43054== +==43054== LEAK SUMMARY: +==43054== definitely lost: 0 bytes in 0 blocks +==43054== indirectly lost: 0 bytes in 0 blocks +==43054== possibly lost: 0 bytes in 0 blocks +==43054== still reachable: 24 bytes in 2 blocks +==43054== suppressed: 618,239 bytes in 8,232 blocks +==43054== Reachable blocks (those to which a pointer was found) are not shown. +==43054== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43054== +==43054== For lists of detected and suppressed errors, rerun with: -s +==43054== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-07_08-54-51/TestConvergenceTester_valgrind.txt b/log-files/2024-09-07_08-54-51/TestConvergenceTester_valgrind.txt new file mode 100644 index 000000000..d0f62f51c --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestConvergenceTester_valgrind.txt @@ -0,0 +1,73 @@ +==41183== Memcheck, a memory error detector +==41183== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41183== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41183== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestConvergenceTester -malloc_debug -malloc_dump -memory_info +==41183== Parent PID: 23903 +==41183== +==41183== +==41183== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41183== Open file descriptor 12: +==41183== at 0xAC4707D: pipe (pipe.c:29) +==41183== by 0x1432407D: ??? +==41183== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41183== by 0xC342418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41183== by 0xC2DBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41183== by 0xAFD2D38: PetscInitialize (pinit.c:924) +==41183== by 0xA4471D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41183== by 0xA447227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41183== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41183== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41183== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41183== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41183== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41183== by 0x11B5F5: main (TestConvergenceTester.cpp:18) +==41183== +==41183== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41183== at 0xAC4BA1C: __open_nocancel (open64_nocancel.c:39) +==41183== by 0xABCFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41183== by 0xA481822: ??? +==41183== by 0xA48196F: ??? +==41183== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41183== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41183== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41183== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41183== by 0xC342418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41183== by 0xC2DBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41183== by 0xAFD2D38: PetscInitialize (pinit.c:924) +==41183== by 0xA4471D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41183== by 0xA447227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41183== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41183== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41183== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41183== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41183== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41183== by 0x11B5F5: main (TestConvergenceTester.cpp:18) +==41183== +==41183== Open file descriptor 115: +==41183== +==41183== +==41183== Open file descriptor 112: +==41183== +==41183== +==41183== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConvergenceTester_valgrind.txt +==41183== +==41183== +==41183== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41183== +==41183== +==41183== +==41183== HEAP SUMMARY: +==41183== in use at exit: 618,814 bytes in 8,248 blocks +==41183== total heap usage: 1,810,243 allocs, 1,801,995 frees, 1,914,182,358 bytes allocated +==41183== +==41183== LEAK SUMMARY: +==41183== definitely lost: 0 bytes in 0 blocks +==41183== indirectly lost: 0 bytes in 0 blocks +==41183== possibly lost: 0 bytes in 0 blocks +==41183== still reachable: 24 bytes in 2 blocks +==41183== suppressed: 618,790 bytes in 8,246 blocks +==41183== Reachable blocks (those to which a pointer was found) are not shown. +==41183== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41183== +==41183== For lists of detected and suppressed errors, rerun with: -s +==41183== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 121 from 38) diff --git a/log-files/2024-09-07_08-54-51/TestCoupledCableTestProblem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCoupledCableTestProblem_valgrind.txt new file mode 100644 index 000000000..fcc7e70fa --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCoupledCableTestProblem_valgrind.txt @@ -0,0 +1,73 @@ +==24936== Memcheck, a memory error detector +==24936== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24936== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24936== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestCoupledCableTestProblem -malloc_debug -malloc_dump -memory_info +==24936== Parent PID: 23903 +==24936== +==24936== +==24936== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24936== Open file descriptor 12: +==24936== at 0x84E707D: pipe (pipe.c:29) +==24936== by 0x104D507D: ??? +==24936== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24936== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24936== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24936== by 0x6AACD38: PetscInitialize (pinit.c:924) +==24936== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24936== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24936== by 0x13CC22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24936== by 0x137D33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24936== by 0x13A8DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24936== by 0x13A7D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24936== by 0x13ADE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24936== by 0x136535: main (TestCoupledCableTestProblem.cpp:18) +==24936== +==24936== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24936== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==24936== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24936== by 0x7D3B822: ??? +==24936== by 0x7D3B96F: ??? +==24936== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24936== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24936== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24936== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24936== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24936== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24936== by 0x6AACD38: PetscInitialize (pinit.c:924) +==24936== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24936== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24936== by 0x13CC22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24936== by 0x137D33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24936== by 0x13A8DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24936== by 0x13A7D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24936== by 0x13ADE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24936== by 0x136535: main (TestCoupledCableTestProblem.cpp:18) +==24936== +==24936== Open file descriptor 115: +==24936== +==24936== +==24936== Open file descriptor 112: +==24936== +==24936== +==24936== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCoupledCableTestProblem_valgrind.txt +==24936== +==24936== +==24936== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24936== +==24936== +==24936== +==24936== HEAP SUMMARY: +==24936== in use at exit: 618,254 bytes in 8,238 blocks +==24936== total heap usage: 501,736 allocs, 493,498 frees, 1,359,093,647 bytes allocated +==24936== +==24936== LEAK SUMMARY: +==24936== definitely lost: 0 bytes in 0 blocks +==24936== indirectly lost: 0 bytes in 0 blocks +==24936== possibly lost: 0 bytes in 0 blocks +==24936== still reachable: 24 bytes in 2 blocks +==24936== suppressed: 618,230 bytes in 8,236 blocks +==24936== Reachable blocks (those to which a pointer was found) are not shown. +==24936== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24936== +==24936== For lists of detected and suppressed errors, rerun with: -s +==24936== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt new file mode 100644 index 000000000..ae87a027d --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39535== Memcheck, a memory error detector +==39535== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39535== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39535== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial -malloc_debug -malloc_dump -memory_info +==39535== Parent PID: 23903 +==39535== +==39535== +==39535== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39535== Open file descriptor 12: +==39535== at 0x10CF207D: pipe (pipe.c:29) +==39535== by 0x196AD07D: ??? +==39535== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39535== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39535== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39535== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39535== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39535== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39535== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39535== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39535== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39535== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39535== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39535== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) +==39535== +==39535== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39535== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==39535== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39535== by 0xF136822: ??? +==39535== by 0xF13696F: ??? +==39535== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39535== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39535== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39535== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39535== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39535== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39535== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39535== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39535== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39535== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39535== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39535== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39535== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39535== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39535== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) +==39535== +==39535== Open file descriptor 115: +==39535== +==39535== +==39535== Open file descriptor 112: +==39535== +==39535== +==39535== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt +==39535== +==39535== +==39535== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39535== +==39535== +==39535== +==39535== HEAP SUMMARY: +==39535== in use at exit: 618,350 bytes in 8,239 blocks +==39535== total heap usage: 514,149 allocs, 505,910 frees, 1,651,566,009 bytes allocated +==39535== +==39535== LEAK SUMMARY: +==39535== definitely lost: 0 bytes in 0 blocks +==39535== indirectly lost: 0 bytes in 0 blocks +==39535== possibly lost: 0 bytes in 0 blocks +==39535== still reachable: 56 bytes in 3 blocks +==39535== suppressed: 618,294 bytes in 8,236 blocks +==39535== Reachable blocks (those to which a pointer was found) are not shown. +==39535== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39535== +==39535== For lists of detected and suppressed errors, rerun with: -s +==39535== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt new file mode 100644 index 000000000..4f47f800b --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39592== Memcheck, a memory error detector +==39592== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39592== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39592== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellCycleModelTutorial -malloc_debug -malloc_dump -memory_info +==39592== Parent PID: 23903 +==39592== +==39592== +==39592== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39592== Open file descriptor 12: +==39592== at 0x10DD907D: pipe (pipe.c:29) +==39592== by 0x196AD07D: ??? +==39592== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39592== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39592== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39592== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39592== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39592== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39592== by 0x2258F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39592== by 0x21F2AB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39592== by 0x222B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39592== by 0x222A01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39592== by 0x223097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39592== by 0x21BBD5: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19) +==39592== +==39592== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39592== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==39592== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39592== by 0xF136822: ??? +==39592== by 0xF13696F: ??? +==39592== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39592== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39592== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39592== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39592== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39592== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39592== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39592== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39592== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39592== by 0x2258F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39592== by 0x21F2AB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39592== by 0x222B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39592== by 0x222A01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39592== by 0x223097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39592== by 0x21BBD5: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19) +==39592== +==39592== Open file descriptor 115: +==39592== +==39592== +==39592== Open file descriptor 112: +==39592== +==39592== +==39592== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt +==39592== +==39592== +==39592== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39592== +==39592== +==39592== +==39592== HEAP SUMMARY: +==39592== in use at exit: 618,279 bytes in 8,235 blocks +==39592== total heap usage: 8,976,907 allocs, 8,968,672 frees, 2,183,735,968 bytes allocated +==39592== +==39592== LEAK SUMMARY: +==39592== definitely lost: 0 bytes in 0 blocks +==39592== indirectly lost: 0 bytes in 0 blocks +==39592== possibly lost: 0 bytes in 0 blocks +==39592== still reachable: 56 bytes in 3 blocks +==39592== suppressed: 618,223 bytes in 8,232 blocks +==39592== Reachable blocks (those to which a pointer was found) are not shown. +==39592== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39592== +==39592== For lists of detected and suppressed errors, rerun with: -s +==39592== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 32 from 32) diff --git a/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt new file mode 100644 index 000000000..199ec2265 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39599== Memcheck, a memory error detector +==39599== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39599== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39599== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellKillerTutorial -malloc_debug -malloc_dump -memory_info +==39599== Parent PID: 23903 +==39599== +==39599== +==39599== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39599== Open file descriptor 12: +==39599== at 0x10DD907D: pipe (pipe.c:29) +==39599== by 0x196AD07D: ??? +==39599== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39599== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39599== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39599== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39599== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39599== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39599== by 0x141179: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39599== by 0x13BF3F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39599== by 0x13E6FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39599== by 0x13E5F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39599== by 0x13EC09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39599== by 0x13A735: main (TestCreatingAndUsingANewCellKillerTutorial.cpp:18) +==39599== +==39599== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39599== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==39599== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39599== by 0xF136822: ??? +==39599== by 0xF13696F: ??? +==39599== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39599== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39599== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39599== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39599== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39599== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39599== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39599== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39599== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39599== by 0x141179: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39599== by 0x13BF3F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39599== by 0x13E6FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39599== by 0x13E5F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39599== by 0x13EC09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39599== by 0x13A735: main (TestCreatingAndUsingANewCellKillerTutorial.cpp:18) +==39599== +==39599== Open file descriptor 115: +==39599== +==39599== +==39599== Open file descriptor 112: +==39599== +==39599== +==39599== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt +==39599== +==39599== +==39599== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39599== +==39599== +==39599== +==39599== HEAP SUMMARY: +==39599== in use at exit: 618,279 bytes in 8,235 blocks +==39599== total heap usage: 2,717,563 allocs, 2,709,328 frees, 1,507,789,231 bytes allocated +==39599== +==39599== LEAK SUMMARY: +==39599== definitely lost: 0 bytes in 0 blocks +==39599== indirectly lost: 0 bytes in 0 blocks +==39599== possibly lost: 0 bytes in 0 blocks +==39599== still reachable: 56 bytes in 3 blocks +==39599== suppressed: 618,223 bytes in 8,232 blocks +==39599== Reachable blocks (those to which a pointer was found) are not shown. +==39599== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39599== +==39599== For lists of detected and suppressed errors, rerun with: -s +==39599== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt new file mode 100644 index 000000000..6591b8ec8 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39612== Memcheck, a memory error detector +==39612== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39612== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39612== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellMutationStateTutorial -malloc_debug -malloc_dump -memory_info +==39612== Parent PID: 23903 +==39612== +==39612== +==39612== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39612== Open file descriptor 12: +==39612== at 0x10CF207D: pipe (pipe.c:29) +==39612== by 0x196AD07D: ??? +==39612== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39612== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39612== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39612== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39612== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39612== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39612== by 0x149987: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39612== by 0x1442D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39612== by 0x146FD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39612== by 0x146E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39612== by 0x147509: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39612== by 0x1426F5: main (TestCreatingAndUsingANewCellMutationStateTutorial.cpp:19) +==39612== +==39612== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39612== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==39612== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39612== by 0xF136822: ??? +==39612== by 0xF13696F: ??? +==39612== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39612== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39612== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39612== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39612== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39612== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39612== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39612== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39612== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39612== by 0x149987: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39612== by 0x1442D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39612== by 0x146FD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39612== by 0x146E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39612== by 0x147509: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39612== by 0x1426F5: main (TestCreatingAndUsingANewCellMutationStateTutorial.cpp:19) +==39612== +==39612== Open file descriptor 115: +==39612== +==39612== +==39612== Open file descriptor 112: +==39612== +==39612== +==39612== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt +==39612== +==39612== +==39612== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39612== +==39612== +==39612== +==39612== HEAP SUMMARY: +==39612== in use at exit: 618,279 bytes in 8,235 blocks +==39612== total heap usage: 4,262,895 allocs, 4,254,660 frees, 1,898,477,131 bytes allocated +==39612== +==39612== LEAK SUMMARY: +==39612== definitely lost: 0 bytes in 0 blocks +==39612== indirectly lost: 0 bytes in 0 blocks +==39612== possibly lost: 0 bytes in 0 blocks +==39612== still reachable: 56 bytes in 3 blocks +==39612== suppressed: 618,223 bytes in 8,232 blocks +==39612== Reachable blocks (those to which a pointer was found) are not shown. +==39612== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39612== +==39612== For lists of detected and suppressed errors, rerun with: -s +==39612== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt new file mode 100644 index 000000000..b80d7080f --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39753== Memcheck, a memory error detector +==39753== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39753== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39753== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial -malloc_debug -malloc_dump -memory_info +==39753== Parent PID: 23903 +==39753== +==39753== +==39753== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39753== Open file descriptor 12: +==39753== at 0x10CF207D: pipe (pipe.c:29) +==39753== by 0x196AD07D: ??? +==39753== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39753== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39753== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39753== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39753== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39753== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39753== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39753== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39753== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39753== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39753== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39753== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) +==39753== +==39753== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39753== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==39753== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39753== by 0xF136822: ??? +==39753== by 0xF13696F: ??? +==39753== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39753== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39753== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39753== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39753== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39753== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39753== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39753== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39753== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39753== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39753== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39753== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39753== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39753== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39753== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) +==39753== +==39753== Open file descriptor 115: +==39753== +==39753== +==39753== Open file descriptor 112: +==39753== +==39753== +==39753== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt +==39753== +==39753== +==39753== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39753== +==39753== +==39753== +==39753== HEAP SUMMARY: +==39753== in use at exit: 618,350 bytes in 8,239 blocks +==39753== total heap usage: 426,445 allocs, 418,206 frees, 1,393,461,215 bytes allocated +==39753== +==39753== LEAK SUMMARY: +==39753== definitely lost: 0 bytes in 0 blocks +==39753== indirectly lost: 0 bytes in 0 blocks +==39753== possibly lost: 0 bytes in 0 blocks +==39753== still reachable: 56 bytes in 3 blocks +==39753== suppressed: 618,294 bytes in 8,236 blocks +==39753== Reachable blocks (those to which a pointer was found) are not shown. +==39753== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39753== +==39753== For lists of detected and suppressed errors, rerun with: -s +==39753== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt new file mode 100644 index 000000000..5852090ef --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39782== Memcheck, a memory error detector +==39782== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39782== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39782== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellPropertyTutorial -malloc_debug -malloc_dump -memory_info +==39782== Parent PID: 23903 +==39782== +==39782== +==39782== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39782== Open file descriptor 12: +==39782== at 0x10CF207D: pipe (pipe.c:29) +==39782== by 0x196AD07D: ??? +==39782== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39782== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39782== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39782== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39782== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39782== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39782== by 0x1502FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39782== by 0x14A5F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39782== by 0x14D664: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39782== by 0x14D504: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39782== by 0x14DB9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39782== by 0x148A15: main (TestCreatingAndUsingANewCellPropertyTutorial.cpp:19) +==39782== +==39782== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39782== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==39782== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39782== by 0xF136822: ??? +==39782== by 0xF13696F: ??? +==39782== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39782== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39782== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39782== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39782== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39782== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39782== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39782== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39782== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39782== by 0x1502FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39782== by 0x14A5F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39782== by 0x14D664: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39782== by 0x14D504: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39782== by 0x14DB9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39782== by 0x148A15: main (TestCreatingAndUsingANewCellPropertyTutorial.cpp:19) +==39782== +==39782== Open file descriptor 115: +==39782== +==39782== +==39782== Open file descriptor 112: +==39782== +==39782== +==39782== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt +==39782== +==39782== +==39782== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39782== +==39782== +==39782== +==39782== HEAP SUMMARY: +==39782== in use at exit: 618,279 bytes in 8,235 blocks +==39782== total heap usage: 2,410,741 allocs, 2,402,506 frees, 1,556,333,089 bytes allocated +==39782== +==39782== LEAK SUMMARY: +==39782== definitely lost: 0 bytes in 0 blocks +==39782== indirectly lost: 0 bytes in 0 blocks +==39782== possibly lost: 0 bytes in 0 blocks +==39782== still reachable: 56 bytes in 3 blocks +==39782== suppressed: 618,223 bytes in 8,232 blocks +==39782== Reachable blocks (those to which a pointer was found) are not shown. +==39782== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39782== +==39782== For lists of detected and suppressed errors, rerun with: -s +==39782== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewForceTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewForceTutorial_valgrind.txt new file mode 100644 index 000000000..e2dea778d --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewForceTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39784== Memcheck, a memory error detector +==39784== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39784== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39784== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewForceTutorial -malloc_debug -malloc_dump -memory_info +==39784== Parent PID: 23903 +==39784== +==39784== +==39784== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39784== Open file descriptor 12: +==39784== at 0x10DD907D: pipe (pipe.c:29) +==39784== by 0x196AD07D: ??? +==39784== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39784== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39784== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39784== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39784== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39784== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39784== by 0x14368F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39784== by 0x13E09F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39784== by 0x140942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39784== by 0x14083D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39784== by 0x140E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39784== by 0x13C895: main (TestCreatingAndUsingANewForceTutorial.cpp:18) +==39784== +==39784== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39784== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==39784== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39784== by 0xF136822: ??? +==39784== by 0xF13696F: ??? +==39784== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39784== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39784== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39784== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39784== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39784== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39784== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39784== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39784== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39784== by 0x14368F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39784== by 0x13E09F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39784== by 0x140942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39784== by 0x14083D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39784== by 0x140E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39784== by 0x13C895: main (TestCreatingAndUsingANewForceTutorial.cpp:18) +==39784== +==39784== Open file descriptor 115: +==39784== +==39784== +==39784== Open file descriptor 112: +==39784== +==39784== +==39784== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewForceTutorial_valgrind.txt +==39784== +==39784== +==39784== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39784== +==39784== +==39784== +==39784== HEAP SUMMARY: +==39784== in use at exit: 618,350 bytes in 8,239 blocks +==39784== total heap usage: 681,547 allocs, 673,308 frees, 1,549,479,513 bytes allocated +==39784== +==39784== LEAK SUMMARY: +==39784== definitely lost: 0 bytes in 0 blocks +==39784== indirectly lost: 0 bytes in 0 blocks +==39784== possibly lost: 0 bytes in 0 blocks +==39784== still reachable: 56 bytes in 3 blocks +==39784== suppressed: 618,294 bytes in 8,236 blocks +==39784== Reachable blocks (those to which a pointer was found) are not shown. +==39784== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39784== +==39784== For lists of detected and suppressed errors, rerun with: -s +==39784== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt new file mode 100644 index 000000000..c04619cbe --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39817== Memcheck, a memory error detector +==39817== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39817== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39817== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewSrnModelTutorial -malloc_debug -malloc_dump -memory_info +==39817== Parent PID: 23903 +==39817== +==39817== +==39817== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39817== Open file descriptor 12: +==39817== at 0x1101B07D: pipe (pipe.c:29) +==39817== by 0x196AB07D: ??? +==39817== by 0x14C6C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39817== by 0x1083C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39817== by 0x107D5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39817== by 0xF4CCD38: PetscInitialize (pinit.c:924) +==39817== by 0xF33E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39817== by 0xF33E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39817== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39817== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39817== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39817== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39817== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39817== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) +==39817== +==39817== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39817== at 0x1101FA1C: __open_nocancel (open64_nocancel.c:39) +==39817== by 0x10FA3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39817== by 0xF378822: ??? +==39817== by 0xF37896F: ??? +==39817== by 0x14D116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39817== by 0x14D11938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39817== by 0x14CC7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39817== by 0x14C6C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39817== by 0x1083C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39817== by 0x107D5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39817== by 0xF4CCD38: PetscInitialize (pinit.c:924) +==39817== by 0xF33E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39817== by 0xF33E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39817== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39817== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39817== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39817== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39817== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39817== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) +==39817== +==39817== Open file descriptor 115: +==39817== +==39817== +==39817== Open file descriptor 112: +==39817== +==39817== +==39817== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt +==39817== +==39817== +==39817== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39817== +==39817== +==39817== +==39817== HEAP SUMMARY: +==39817== in use at exit: 618,279 bytes in 8,235 blocks +==39817== total heap usage: 3,817,497 allocs, 3,809,262 frees, 1,509,498,704 bytes allocated +==39817== +==39817== LEAK SUMMARY: +==39817== definitely lost: 0 bytes in 0 blocks +==39817== indirectly lost: 0 bytes in 0 blocks +==39817== possibly lost: 0 bytes in 0 blocks +==39817== still reachable: 56 bytes in 3 blocks +==39817== suppressed: 618,223 bytes in 8,232 blocks +==39817== Reachable blocks (those to which a pointer was found) are not shown. +==39817== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39817== +==39817== For lists of detected and suppressed errors, rerun with: -s +==39817== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt new file mode 100644 index 000000000..b6fa07c69 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39849== Memcheck, a memory error detector +==39849== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39849== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39849== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingNewCellBasedWritersTutorial -malloc_debug -malloc_dump -memory_info +==39849== Parent PID: 23903 +==39849== +==39849== +==39849== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39849== Open file descriptor 12: +==39849== at 0xF83B07D: pipe (pipe.c:29) +==39849== by 0x196AD07D: ??? +==39849== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39849== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39849== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39849== by 0x10127D38: PetscInitialize (pinit.c:924) +==39849== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39849== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39849== by 0x1B8DC8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39849== by 0x1B2CFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39849== by 0x1B669A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39849== by 0x1B6596: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39849== by 0x1B6BA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39849== by 0x1B14F5: main (TestCreatingAndUsingNewCellBasedWritersTutorial.cpp:18) +==39849== +==39849== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39849== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==39849== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39849== by 0xF136822: ??? +==39849== by 0xF13696F: ??? +==39849== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39849== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39849== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39849== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39849== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39849== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39849== by 0x10127D38: PetscInitialize (pinit.c:924) +==39849== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39849== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39849== by 0x1B8DC8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39849== by 0x1B2CFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39849== by 0x1B669A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39849== by 0x1B6596: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39849== by 0x1B6BA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39849== by 0x1B14F5: main (TestCreatingAndUsingNewCellBasedWritersTutorial.cpp:18) +==39849== +==39849== Open file descriptor 115: +==39849== +==39849== +==39849== Open file descriptor 112: +==39849== +==39849== +==39849== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt +==39849== +==39849== +==39849== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39849== +==39849== +==39849== +==39849== HEAP SUMMARY: +==39849== in use at exit: 618,279 bytes in 8,235 blocks +==39849== total heap usage: 2,243,067 allocs, 2,234,832 frees, 1,577,629,592 bytes allocated +==39849== +==39849== LEAK SUMMARY: +==39849== definitely lost: 0 bytes in 0 blocks +==39849== indirectly lost: 0 bytes in 0 blocks +==39849== possibly lost: 0 bytes in 0 blocks +==39849== still reachable: 56 bytes in 3 blocks +==39849== suppressed: 618,223 bytes in 8,232 blocks +==39849== Reachable blocks (those to which a pointer was found) are not shown. +==39849== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39849== +==39849== For lists of detected and suppressed errors, rerun with: -s +==39849== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestCryptCellsGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCryptCellsGenerator_valgrind.txt new file mode 100644 index 000000000..723f06935 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCryptCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==40117== Memcheck, a memory error detector +==40117== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40117== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40117== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptCellsGenerator -malloc_debug -malloc_dump -memory_info +==40117== Parent PID: 23903 +==40117== +==40117== +==40117== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40117== Open file descriptor 12: +==40117== at 0x1257007D: pipe (pipe.c:29) +==40117== by 0x1B36D07D: ??? +==40117== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40117== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40117== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40117== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40117== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40117== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40117== by 0x1222A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40117== by 0x11D653: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40117== by 0x11FD06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40117== by 0x11FC01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40117== by 0x120215: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40117== by 0x11BE55: main (TestCryptCellsGenerator.cpp:18) +==40117== +==40117== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40117== at 0x12574A1C: __open_nocancel (open64_nocancel.c:39) +==40117== by 0x124F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40117== by 0x11D74822: ??? +==40117== by 0x11D7496F: ??? +==40117== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40117== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40117== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40117== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40117== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40117== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40117== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40117== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40117== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40117== by 0x1222A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40117== by 0x11D653: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40117== by 0x11FD06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40117== by 0x11FC01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40117== by 0x120215: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40117== by 0x11BE55: main (TestCryptCellsGenerator.cpp:18) +==40117== +==40117== Open file descriptor 115: +==40117== +==40117== +==40117== Open file descriptor 112: +==40117== +==40117== +==40117== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptCellsGenerator_valgrind.txt +==40117== +==40117== +==40117== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40117== +==40117== +==40117== +==40117== HEAP SUMMARY: +==40117== in use at exit: 618,494 bytes in 8,240 blocks +==40117== total heap usage: 87,340 allocs, 79,100 frees, 1,342,271,900 bytes allocated +==40117== +==40117== LEAK SUMMARY: +==40117== definitely lost: 0 bytes in 0 blocks +==40117== indirectly lost: 0 bytes in 0 blocks +==40117== possibly lost: 0 bytes in 0 blocks +==40117== still reachable: 184 bytes in 4 blocks +==40117== suppressed: 618,310 bytes in 8,236 blocks +==40117== Reachable blocks (those to which a pointer was found) are not shown. +==40117== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40117== +==40117== For lists of detected and suppressed errors, rerun with: -s +==40117== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCryptDivisionRules_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCryptDivisionRules_valgrind.txt new file mode 100644 index 000000000..ac51ae2f5 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCryptDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==40323== Memcheck, a memory error detector +==40323== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40323== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40323== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptDivisionRules -malloc_debug -malloc_dump -memory_info +==40323== Parent PID: 23903 +==40323== +==40323== +==40323== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40323== Open file descriptor 12: +==40323== at 0x125B207D: pipe (pipe.c:29) +==40323== by 0x1B36D07D: ??? +==40323== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40323== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40323== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40323== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40323== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40323== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40323== by 0x15D2DD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40323== by 0x15795D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40323== by 0x15A6A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40323== by 0x15A542: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40323== by 0x15ABD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40323== by 0x155D85: main (TestCryptDivisionRules.cpp:19) +==40323== +==40323== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40323== at 0x125B6A1C: __open_nocancel (open64_nocancel.c:39) +==40323== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40323== by 0x109F6822: ??? +==40323== by 0x109F696F: ??? +==40323== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40323== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40323== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40323== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40323== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40323== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40323== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40323== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40323== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40323== by 0x15D2DD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40323== by 0x15795D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40323== by 0x15A6A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40323== by 0x15A542: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40323== by 0x15ABD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40323== by 0x155D85: main (TestCryptDivisionRules.cpp:19) +==40323== +==40323== Open file descriptor 115: +==40323== +==40323== +==40323== Open file descriptor 112: +==40323== +==40323== +==40323== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptDivisionRules_valgrind.txt +==40323== +==40323== +==40323== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40323== +==40323== +==40323== +==40323== HEAP SUMMARY: +==40323== in use at exit: 618,382 bytes in 8,240 blocks +==40323== total heap usage: 56,686 allocs, 48,446 frees, 1,339,375,603 bytes allocated +==40323== +==40323== LEAK SUMMARY: +==40323== definitely lost: 0 bytes in 0 blocks +==40323== indirectly lost: 0 bytes in 0 blocks +==40323== possibly lost: 0 bytes in 0 blocks +==40323== still reachable: 72 bytes in 4 blocks +==40323== suppressed: 618,310 bytes in 8,236 blocks +==40323== Reachable blocks (those to which a pointer was found) are not shown. +==40323== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40323== +==40323== For lists of detected and suppressed errors, rerun with: -s +==40323== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCryptProjectionForce_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCryptProjectionForce_valgrind.txt new file mode 100644 index 000000000..0a6bb5235 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCryptProjectionForce_valgrind.txt @@ -0,0 +1,73 @@ +==40165== Memcheck, a memory error detector +==40165== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40165== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40165== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptProjectionForce -malloc_debug -malloc_dump -memory_info +==40165== Parent PID: 23903 +==40165== +==40165== +==40165== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40165== Open file descriptor 12: +==40165== at 0x111E407D: pipe (pipe.c:29) +==40165== by 0x1B36F07D: ??? +==40165== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40165== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40165== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40165== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40165== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40165== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40165== by 0x162A3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40165== by 0x15AE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40165== by 0x15DF5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40165== by 0x15DDFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40165== by 0x15E491: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40165== by 0x159295: main (TestCryptProjectionForce.cpp:19) +==40165== +==40165== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40165== at 0x111E8A1C: __open_nocancel (open64_nocancel.c:39) +==40165== by 0x1116CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40165== by 0x109F6822: ??? +==40165== by 0x109F696F: ??? +==40165== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40165== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40165== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40165== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40165== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40165== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40165== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40165== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40165== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40165== by 0x162A3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40165== by 0x15AE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40165== by 0x15DF5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40165== by 0x15DDFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40165== by 0x15E491: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40165== by 0x159295: main (TestCryptProjectionForce.cpp:19) +==40165== +==40165== Open file descriptor 115: +==40165== +==40165== +==40165== Open file descriptor 112: +==40165== +==40165== +==40165== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptProjectionForce_valgrind.txt +==40165== +==40165== +==40165== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40165== +==40165== +==40165== +==40165== HEAP SUMMARY: +==40165== in use at exit: 618,446 bytes in 8,240 blocks +==40165== total heap usage: 88,281 allocs, 80,041 frees, 1,341,616,305 bytes allocated +==40165== +==40165== LEAK SUMMARY: +==40165== definitely lost: 0 bytes in 0 blocks +==40165== indirectly lost: 0 bytes in 0 blocks +==40165== possibly lost: 0 bytes in 0 blocks +==40165== still reachable: 136 bytes in 4 blocks +==40165== suppressed: 618,310 bytes in 8,236 blocks +==40165== Reachable blocks (those to which a pointer was found) are not shown. +==40165== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40165== +==40165== For lists of detected and suppressed errors, rerun with: -s +==40165== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCryptProjectionStatistics_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCryptProjectionStatistics_valgrind.txt new file mode 100644 index 000000000..419c9be4b --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCryptProjectionStatistics_valgrind.txt @@ -0,0 +1,73 @@ +==40613== Memcheck, a memory error detector +==40613== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40613== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40613== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptProjectionStatistics -malloc_debug -malloc_dump -memory_info +==40613== Parent PID: 23903 +==40613== +==40613== +==40613== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40613== Open file descriptor 12: +==40613== at 0x1265707D: pipe (pipe.c:29) +==40613== by 0x1B36D07D: ??? +==40613== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40613== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40613== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40613== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40613== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40613== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40613== by 0x128443: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40613== by 0x123753: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40613== by 0x125C6C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40613== by 0x125B67: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40613== by 0x12617B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40613== by 0x121F55: main (TestCryptProjectionStatistics.cpp:18) +==40613== +==40613== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40613== at 0x1265BA1C: __open_nocancel (open64_nocancel.c:39) +==40613== by 0x125DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40613== by 0x11D74822: ??? +==40613== by 0x11D7496F: ??? +==40613== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40613== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40613== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40613== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40613== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40613== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40613== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40613== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40613== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40613== by 0x128443: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40613== by 0x123753: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40613== by 0x125C6C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40613== by 0x125B67: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40613== by 0x12617B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40613== by 0x121F55: main (TestCryptProjectionStatistics.cpp:18) +==40613== +==40613== Open file descriptor 115: +==40613== +==40613== +==40613== Open file descriptor 112: +==40613== +==40613== +==40613== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptProjectionStatistics_valgrind.txt +==40613== +==40613== +==40613== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40613== +==40613== +==40613== +==40613== HEAP SUMMARY: +==40613== in use at exit: 618,366 bytes in 8,239 blocks +==40613== total heap usage: 1,083,855 allocs, 1,075,616 frees, 1,401,239,724 bytes allocated +==40613== +==40613== LEAK SUMMARY: +==40613== definitely lost: 0 bytes in 0 blocks +==40613== indirectly lost: 0 bytes in 0 blocks +==40613== possibly lost: 0 bytes in 0 blocks +==40613== still reachable: 56 bytes in 3 blocks +==40613== suppressed: 618,310 bytes in 8,236 blocks +==40613== Reachable blocks (those to which a pointer was found) are not shown. +==40613== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40613== +==40613== For lists of detected and suppressed errors, rerun with: -s +==40613== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCryptSimulation1d_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCryptSimulation1d_valgrind.txt new file mode 100644 index 000000000..2dba1275a --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCryptSimulation1d_valgrind.txt @@ -0,0 +1,73 @@ +==40374== Memcheck, a memory error detector +==40374== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40374== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40374== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation1d -malloc_debug -malloc_dump -memory_info +==40374== Parent PID: 23903 +==40374== +==40374== +==40374== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40374== Open file descriptor 12: +==40374== at 0x125B207D: pipe (pipe.c:29) +==40374== by 0x1B36D07D: ??? +==40374== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40374== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40374== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40374== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40374== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40374== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40374== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40374== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40374== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40374== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40374== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40374== by 0x21B395: main (TestCryptSimulation1d.cpp:18) +==40374== +==40374== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40374== at 0x125B6A1C: __open_nocancel (open64_nocancel.c:39) +==40374== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40374== by 0x109F6822: ??? +==40374== by 0x109F696F: ??? +==40374== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40374== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40374== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40374== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40374== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40374== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40374== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40374== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40374== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40374== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40374== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40374== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40374== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40374== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40374== by 0x21B395: main (TestCryptSimulation1d.cpp:18) +==40374== +==40374== Open file descriptor 115: +==40374== +==40374== +==40374== Open file descriptor 112: +==40374== +==40374== +==40374== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation1d_valgrind.txt +==40374== +==40374== +==40374== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40374== +==40374== +==40374== +==40374== HEAP SUMMARY: +==40374== in use at exit: 618,295 bytes in 8,235 blocks +==40374== total heap usage: 4,119,326 allocs, 4,111,091 frees, 1,972,573,947 bytes allocated +==40374== +==40374== LEAK SUMMARY: +==40374== definitely lost: 0 bytes in 0 blocks +==40374== indirectly lost: 0 bytes in 0 blocks +==40374== possibly lost: 0 bytes in 0 blocks +==40374== still reachable: 56 bytes in 3 blocks +==40374== suppressed: 618,239 bytes in 8,232 blocks +==40374== Reachable blocks (those to which a pointer was found) are not shown. +==40374== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40374== +==40374== For lists of detected and suppressed errors, rerun with: -s +==40374== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..0d4137ae3 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==40418== Memcheck, a memory error detector +==40418== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40418== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40418== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==40418== Parent PID: 23903 +==40418== +==40418== +==40418== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40418== Open file descriptor 12: +==40418== at 0x111E407D: pipe (pipe.c:29) +==40418== by 0x1B36F07D: ??? +==40418== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40418== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40418== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40418== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40418== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40418== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40418== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40418== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40418== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40418== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40418== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40418== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) +==40418== +==40418== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40418== at 0x111E8A1C: __open_nocancel (open64_nocancel.c:39) +==40418== by 0x1116CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40418== by 0x109F6822: ??? +==40418== by 0x109F696F: ??? +==40418== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40418== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40418== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40418== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40418== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40418== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40418== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40418== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40418== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40418== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40418== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40418== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40418== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40418== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40418== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) +==40418== +==40418== Open file descriptor 115: +==40418== +==40418== +==40418== Open file descriptor 112: +==40418== +==40418== +==40418== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt +==40418== +==40418== +==40418== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40418== +==40418== +==40418== +==40418== HEAP SUMMARY: +==40418== in use at exit: 618,295 bytes in 8,235 blocks +==40418== total heap usage: 6,308,305 allocs, 6,300,070 frees, 2,056,531,380 bytes allocated +==40418== +==40418== LEAK SUMMARY: +==40418== definitely lost: 0 bytes in 0 blocks +==40418== indirectly lost: 0 bytes in 0 blocks +==40418== possibly lost: 0 bytes in 0 blocks +==40418== still reachable: 56 bytes in 3 blocks +==40418== suppressed: 618,239 bytes in 8,232 blocks +==40418== Reachable blocks (those to which a pointer was found) are not shown. +==40418== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40418== +==40418== For lists of detected and suppressed errors, rerun with: -s +==40418== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..111b90987 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==40445== Memcheck, a memory error detector +==40445== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40445== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40445== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==40445== Parent PID: 23903 +==40445== +==40445== +==40445== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40445== Open file descriptor 12: +==40445== at 0x125B207D: pipe (pipe.c:29) +==40445== by 0x1B36D07D: ??? +==40445== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40445== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40445== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40445== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40445== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40445== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40445== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40445== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40445== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40445== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40445== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40445== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) +==40445== +==40445== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40445== at 0x125B6A1C: __open_nocancel (open64_nocancel.c:39) +==40445== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40445== by 0x109F6822: ??? +==40445== by 0x109F696F: ??? +==40445== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40445== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40445== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40445== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40445== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40445== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40445== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40445== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40445== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40445== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40445== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40445== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40445== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40445== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40445== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) +==40445== +==40445== Open file descriptor 115: +==40445== +==40445== +==40445== Open file descriptor 112: +==40445== +==40445== +==40445== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt +==40445== +==40445== +==40445== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40445== +==40445== +==40445== +==40445== HEAP SUMMARY: +==40445== in use at exit: 618,295 bytes in 8,235 blocks +==40445== total heap usage: 3,713,954 allocs, 3,705,719 frees, 1,620,332,309 bytes allocated +==40445== +==40445== LEAK SUMMARY: +==40445== definitely lost: 0 bytes in 0 blocks +==40445== indirectly lost: 0 bytes in 0 blocks +==40445== possibly lost: 0 bytes in 0 blocks +==40445== still reachable: 56 bytes in 3 blocks +==40445== suppressed: 618,239 bytes in 8,232 blocks +==40445== Reachable blocks (those to which a pointer was found) are not shown. +==40445== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40445== +==40445== For lists of detected and suppressed errors, rerun with: -s +==40445== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestCryptSimulationBoundaryCondition_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCryptSimulationBoundaryCondition_valgrind.txt new file mode 100644 index 000000000..804677bf1 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCryptSimulationBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==40324== Memcheck, a memory error detector +==40324== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40324== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40324== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulationBoundaryCondition -malloc_debug -malloc_dump -memory_info +==40324== Parent PID: 23903 +==40324== +==40324== +==40324== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40324== Open file descriptor 12: +==40324== at 0x125B207D: pipe (pipe.c:29) +==40324== by 0x1B36D07D: ??? +==40324== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40324== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40324== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40324== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40324== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40324== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40324== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40324== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40324== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40324== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40324== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40324== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) +==40324== +==40324== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40324== at 0x125B6A1C: __open_nocancel (open64_nocancel.c:39) +==40324== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40324== by 0x109F6822: ??? +==40324== by 0x109F696F: ??? +==40324== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40324== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40324== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40324== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40324== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40324== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40324== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40324== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40324== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40324== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40324== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40324== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40324== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40324== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40324== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) +==40324== +==40324== Open file descriptor 115: +==40324== +==40324== +==40324== Open file descriptor 112: +==40324== +==40324== +==40324== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulationBoundaryCondition_valgrind.txt +==40324== +==40324== +==40324== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40324== +==40324== +==40324== +==40324== HEAP SUMMARY: +==40324== in use at exit: 618,446 bytes in 8,240 blocks +==40324== total heap usage: 70,030 allocs, 61,790 frees, 1,343,020,831 bytes allocated +==40324== +==40324== LEAK SUMMARY: +==40324== definitely lost: 0 bytes in 0 blocks +==40324== indirectly lost: 0 bytes in 0 blocks +==40324== possibly lost: 0 bytes in 0 blocks +==40324== still reachable: 136 bytes in 4 blocks +==40324== suppressed: 618,310 bytes in 8,236 blocks +==40324== Reachable blocks (those to which a pointer was found) are not shown. +==40324== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40324== +==40324== For lists of detected and suppressed errors, rerun with: -s +==40324== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCryptStatistics_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCryptStatistics_valgrind.txt new file mode 100644 index 000000000..84d7d8b5f --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCryptStatistics_valgrind.txt @@ -0,0 +1,73 @@ +==40670== Memcheck, a memory error detector +==40670== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40670== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40670== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info +==40670== Parent PID: 23903 +==40670== +==40670== +==40670== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40670== Open file descriptor 12: +==40670== at 0x1270C07D: pipe (pipe.c:29) +==40670== by 0x1B36F07D: ??? +==40670== by 0x164D44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40670== by 0x11F2D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40670== by 0x11EC6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40670== by 0x10BBDD38: PetscInitialize (pinit.c:924) +==40670== by 0x10A2F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40670== by 0x10A2F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40670== by 0x1BB797: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40670== by 0x1B35DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40670== by 0x1B6DC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40670== by 0x1B6CBD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40670== by 0x1B72D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40670== by 0x1B1DD5: main (TestCryptStatistics.cpp:18) +==40670== +==40670== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40670== at 0x12710A1C: __open_nocancel (open64_nocancel.c:39) +==40670== by 0x12694BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40670== by 0x10A69822: ??? +==40670== by 0x10A6996F: ??? +==40670== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40670== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40670== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40670== by 0x164D42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40670== by 0x11F2D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40670== by 0x11EC6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40670== by 0x10BBDD38: PetscInitialize (pinit.c:924) +==40670== by 0x10A2F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40670== by 0x10A2F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40670== by 0x1BB797: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40670== by 0x1B35DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40670== by 0x1B6DC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40670== by 0x1B6CBD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40670== by 0x1B72D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40670== by 0x1B1DD5: main (TestCryptStatistics.cpp:18) +==40670== +==40670== Open file descriptor 115: +==40670== +==40670== +==40670== Open file descriptor 112: +==40670== +==40670== +==40670== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptStatistics_valgrind.txt +==40670== +==40670== +==40670== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40670== +==40670== +==40670== +==40670== HEAP SUMMARY: +==40670== in use at exit: 618,334 bytes in 8,238 blocks +==40670== total heap usage: 1,798,664 allocs, 1,790,426 frees, 1,443,890,870 bytes allocated +==40670== +==40670== LEAK SUMMARY: +==40670== definitely lost: 0 bytes in 0 blocks +==40670== indirectly lost: 0 bytes in 0 blocks +==40670== possibly lost: 0 bytes in 0 blocks +==40670== still reachable: 24 bytes in 2 blocks +==40670== suppressed: 618,310 bytes in 8,236 blocks +==40670== Reachable blocks (those to which a pointer was found) are not shown. +==40670== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40670== +==40670== For lists of detected and suppressed errors, rerun with: -s +==40670== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCvodeAdaptor_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCvodeAdaptor_valgrind.txt new file mode 100644 index 000000000..8a1b56d62 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCvodeAdaptor_valgrind.txt @@ -0,0 +1,73 @@ +==24849== Memcheck, a memory error detector +==24849== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24849== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24849== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestCvodeAdaptor -malloc_debug -malloc_dump -memory_info +==24849== Parent PID: 23903 +==24849== +==24849== +==24849== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24849== Open file descriptor 12: +==24849== at 0x4F5207D: pipe (pipe.c:29) +==24849== by 0xB1E607D: ??? +==24849== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24849== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24849== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24849== by 0x5308D38: PetscInitialize (pinit.c:924) +==24849== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24849== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24849== by 0x126E96: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24849== by 0x1215DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24849== by 0x1243B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24849== by 0x124254: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24849== by 0x1248EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24849== by 0x11F185: main (TestCvodeAdaptor.cpp:19) +==24849== +==24849== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24849== at 0x4F56A1C: __open_nocancel (open64_nocancel.c:39) +==24849== by 0x4EDABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24849== by 0x4B76822: ??? +==24849== by 0x4B7696F: ??? +==24849== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24849== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24849== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24849== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24849== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24849== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24849== by 0x5308D38: PetscInitialize (pinit.c:924) +==24849== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24849== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24849== by 0x126E96: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24849== by 0x1215DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24849== by 0x1243B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24849== by 0x124254: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24849== by 0x1248EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24849== by 0x11F185: main (TestCvodeAdaptor.cpp:19) +==24849== +==24849== Open file descriptor 115: +==24849== +==24849== +==24849== Open file descriptor 112: +==24849== +==24849== +==24849== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeAdaptor_valgrind.txt +==24849== +==24849== +==24849== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24849== +==24849== +==24849== +==24849== HEAP SUMMARY: +==24849== in use at exit: 617,902 bytes in 8,238 blocks +==24849== total heap usage: 49,835 allocs, 41,597 frees, 1,338,664,064 bytes allocated +==24849== +==24849== LEAK SUMMARY: +==24849== definitely lost: 0 bytes in 0 blocks +==24849== indirectly lost: 0 bytes in 0 blocks +==24849== possibly lost: 0 bytes in 0 blocks +==24849== still reachable: 24 bytes in 2 blocks +==24849== suppressed: 617,878 bytes in 8,236 blocks +==24849== Reachable blocks (those to which a pointer was found) are not shown. +==24849== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24849== +==24849== For lists of detected and suppressed errors, rerun with: -s +==24849== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestCvodeCellsWithDataClamp_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCvodeCellsWithDataClamp_valgrind.txt new file mode 100644 index 000000000..5cc4b9a81 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCvodeCellsWithDataClamp_valgrind.txt @@ -0,0 +1,73 @@ +==41213== Memcheck, a memory error detector +==41213== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41213== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41213== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeCellsWithDataClamp -malloc_debug -malloc_dump -memory_info +==41213== Parent PID: 23903 +==41213== +==41213== +==41213== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41213== Open file descriptor 12: +==41213== at 0x9D8E07D: pipe (pipe.c:29) +==41213== by 0x1432407D: ??? +==41213== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41213== by 0x98DA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41213== by 0x9873D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41213== by 0x856AD38: PetscInitialize (pinit.c:924) +==41213== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41213== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41213== by 0x12948D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41213== by 0x124351: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41213== by 0x126E16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41213== by 0x126CB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41213== by 0x12734D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41213== by 0x1222A5: main (TestCvodeCellsWithDataClamp.cpp:19) +==41213== +==41213== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41213== at 0x9D92A1C: __open_nocancel (open64_nocancel.c:39) +==41213== by 0x9D16BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41213== by 0x8416822: ??? +==41213== by 0x841696F: ??? +==41213== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41213== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41213== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41213== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41213== by 0x98DA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41213== by 0x9873D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41213== by 0x856AD38: PetscInitialize (pinit.c:924) +==41213== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41213== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41213== by 0x12948D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41213== by 0x124351: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41213== by 0x126E16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41213== by 0x126CB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41213== by 0x12734D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41213== by 0x1222A5: main (TestCvodeCellsWithDataClamp.cpp:19) +==41213== +==41213== Open file descriptor 115: +==41213== +==41213== +==41213== Open file descriptor 112: +==41213== +==41213== +==41213== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeCellsWithDataClamp_valgrind.txt +==41213== +==41213== +==41213== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41213== +==41213== +==41213== +==41213== HEAP SUMMARY: +==41213== in use at exit: 624,618 bytes in 8,243 blocks +==41213== total heap usage: 102,618 allocs, 94,375 frees, 1,481,816,985 bytes allocated +==41213== +==41213== LEAK SUMMARY: +==41213== definitely lost: 0 bytes in 0 blocks +==41213== indirectly lost: 0 bytes in 0 blocks +==41213== possibly lost: 0 bytes in 0 blocks +==41213== still reachable: 6,379 bytes in 11 blocks +==41213== suppressed: 618,239 bytes in 8,232 blocks +==41213== Reachable blocks (those to which a pointer was found) are not shown. +==41213== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41213== +==41213== For lists of detected and suppressed errors, rerun with: -s +==41213== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestCvodeCells_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCvodeCells_valgrind.txt new file mode 100644 index 000000000..2fe04fd00 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCvodeCells_valgrind.txt @@ -0,0 +1,73 @@ +==41212== Memcheck, a memory error detector +==41212== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41212== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41212== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeCells -malloc_debug -malloc_dump -memory_info +==41212== Parent PID: 23903 +==41212== +==41212== +==41212== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41212== Open file descriptor 12: +==41212== at 0x9D1A07D: pipe (pipe.c:29) +==41212== by 0x1432407D: ??? +==41212== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41212== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41212== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41212== by 0x85DDD38: PetscInitialize (pinit.c:924) +==41212== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41212== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41212== by 0x1353CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41212== by 0x12FB8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41212== by 0x132882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41212== by 0x132722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41212== by 0x132DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41212== by 0x12AB65: main (TestCvodeCells.cpp:19) +==41212== +==41212== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41212== at 0x9D1EA1C: __open_nocancel (open64_nocancel.c:39) +==41212== by 0x9CA2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41212== by 0x8489822: ??? +==41212== by 0x848996F: ??? +==41212== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41212== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41212== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41212== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41212== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41212== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41212== by 0x85DDD38: PetscInitialize (pinit.c:924) +==41212== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41212== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41212== by 0x1353CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41212== by 0x12FB8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41212== by 0x132882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41212== by 0x132722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41212== by 0x132DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41212== by 0x12AB65: main (TestCvodeCells.cpp:19) +==41212== +==41212== Open file descriptor 115: +==41212== +==41212== +==41212== Open file descriptor 112: +==41212== +==41212== +==41212== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeCells_valgrind.txt +==41212== +==41212== +==41212== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41212== +==41212== +==41212== +==41212== HEAP SUMMARY: +==41212== in use at exit: 620,034 bytes in 8,238 blocks +==41212== total heap usage: 231,021 allocs, 222,783 frees, 1,363,913,118 bytes allocated +==41212== +==41212== LEAK SUMMARY: +==41212== definitely lost: 0 bytes in 0 blocks +==41212== indirectly lost: 0 bytes in 0 blocks +==41212== possibly lost: 0 bytes in 0 blocks +==41212== still reachable: 1,795 bytes in 6 blocks +==41212== suppressed: 618,239 bytes in 8,232 blocks +==41212== Reachable blocks (those to which a pointer was found) are not shown. +==41212== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41212== +==41212== For lists of detected and suppressed errors, rerun with: -s +==41212== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestCvodeWithJacobian_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCvodeWithJacobian_valgrind.txt new file mode 100644 index 000000000..795c8d35f --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCvodeWithJacobian_valgrind.txt @@ -0,0 +1,73 @@ +==41422== Memcheck, a memory error detector +==41422== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41422== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41422== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeWithJacobian -malloc_debug -malloc_dump -memory_info +==41422== Parent PID: 23903 +==41422== +==41422== +==41422== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41422== Open file descriptor 12: +==41422== at 0x9C6507D: pipe (pipe.c:29) +==41422== by 0x1432407D: ??? +==41422== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41422== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41422== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41422== by 0x8505D38: PetscInitialize (pinit.c:924) +==41422== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41422== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41422== by 0x117769: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41422== by 0x1133B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41422== by 0x1155A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41422== by 0x11549E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41422== by 0x115AB1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41422== by 0x111BB5: main (TestCvodeWithJacobian.cpp:18) +==41422== +==41422== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41422== at 0x9C69A1C: __open_nocancel (open64_nocancel.c:39) +==41422== by 0x9BEDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41422== by 0x9794822: ??? +==41422== by 0x979496F: ??? +==41422== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41422== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41422== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41422== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41422== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41422== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41422== by 0x8505D38: PetscInitialize (pinit.c:924) +==41422== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41422== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41422== by 0x117769: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41422== by 0x1133B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41422== by 0x1155A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41422== by 0x11549E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41422== by 0x115AB1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41422== by 0x111BB5: main (TestCvodeWithJacobian.cpp:18) +==41422== +==41422== Open file descriptor 115: +==41422== +==41422== +==41422== Open file descriptor 112: +==41422== +==41422== +==41422== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeWithJacobian_valgrind.txt +==41422== +==41422== +==41422== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41422== +==41422== +==41422== +==41422== HEAP SUMMARY: +==41422== in use at exit: 618,263 bytes in 8,234 blocks +==41422== total heap usage: 74,027 allocs, 65,793 frees, 1,342,639,599 bytes allocated +==41422== +==41422== LEAK SUMMARY: +==41422== definitely lost: 0 bytes in 0 blocks +==41422== indirectly lost: 0 bytes in 0 blocks +==41422== possibly lost: 0 bytes in 0 blocks +==41422== still reachable: 24 bytes in 2 blocks +==41422== suppressed: 618,239 bytes in 8,232 blocks +==41422== Reachable blocks (those to which a pointer was found) are not shown. +==41422== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41422== +==41422== For lists of detected and suppressed errors, rerun with: -s +==41422== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-07_08-54-51/TestCwd_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCwd_valgrind.txt new file mode 100644 index 000000000..f0dbb8a56 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCwd_valgrind.txt @@ -0,0 +1,73 @@ +==23936== Memcheck, a memory error detector +==23936== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23936== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23936== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCwd -malloc_debug -malloc_dump -memory_info +==23936== Parent PID: 23903 +==23936== +==23936== +==23936== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23936== Open file descriptor 12: +==23936== at 0x616907D: pipe (pipe.c:29) +==23936== by 0xAEA507D: ??? +==23936== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23936== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23936== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23936== by 0x4A23D38: PetscInitialize (pinit.c:924) +==23936== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23936== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23936== by 0x1130E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23936== by 0x10EFB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23936== by 0x1111A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23936== by 0x11109E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23936== by 0x1116B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23936== by 0x10D7B5: main (TestCwd.cpp:18) +==23936== +==23936== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23936== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==23936== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23936== by 0x5CB2822: ??? +==23936== by 0x5CB296F: ??? +==23936== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23936== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23936== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23936== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23936== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23936== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23936== by 0x4A23D38: PetscInitialize (pinit.c:924) +==23936== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23936== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23936== by 0x1130E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23936== by 0x10EFB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23936== by 0x1111A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23936== by 0x11109E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23936== by 0x1116B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23936== by 0x10D7B5: main (TestCwd.cpp:18) +==23936== +==23936== Open file descriptor 115: +==23936== +==23936== +==23936== Open file descriptor 112: +==23936== +==23936== +==23936== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCwd_valgrind.txt +==23936== +==23936== +==23936== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23936== +==23936== +==23936== +==23936== HEAP SUMMARY: +==23936== in use at exit: 617,838 bytes in 8,238 blocks +==23936== total heap usage: 44,919 allocs, 36,681 frees, 1,338,164,567 bytes allocated +==23936== +==23936== LEAK SUMMARY: +==23936== definitely lost: 0 bytes in 0 blocks +==23936== indirectly lost: 0 bytes in 0 blocks +==23936== possibly lost: 0 bytes in 0 blocks +==23936== still reachable: 24 bytes in 2 blocks +==23936== suppressed: 617,814 bytes in 8,236 blocks +==23936== Reachable blocks (those to which a pointer was found) are not shown. +==23936== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23936== +==23936== For lists of detected and suppressed errors, rerun with: -s +==23936== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestCylindrical2dMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCylindrical2dMesh_valgrind.txt new file mode 100644 index 000000000..0b7c45a45 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCylindrical2dMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24467== Memcheck, a memory error detector +==24467== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24467== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24467== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dMesh -malloc_debug -malloc_dump -memory_info +==24467== Parent PID: 23903 +==24467== +==24467== +==24467== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24467== Open file descriptor 12: +==24467== at 0x823407D: pipe (pipe.c:29) +==24467== by 0x100C507D: ??? +==24467== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24467== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24467== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24467== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24467== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24467== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24467== by 0x12A575: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24467== by 0x124FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24467== by 0x127D3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24467== by 0x127BDF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24467== by 0x128275: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24467== by 0x123425: main (TestCylindrical2dMesh.cpp:19) +==24467== +==24467== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24467== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24467== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24467== by 0x658F822: ??? +==24467== by 0x658F96F: ??? +==24467== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24467== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24467== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24467== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24467== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24467== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24467== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24467== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24467== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24467== by 0x12A575: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24467== by 0x124FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24467== by 0x127D3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24467== by 0x127BDF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24467== by 0x128275: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24467== by 0x123425: main (TestCylindrical2dMesh.cpp:19) +==24467== +==24467== Open file descriptor 115: +==24467== +==24467== +==24467== Open file descriptor 112: +==24467== +==24467== +==24467== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dMesh_valgrind.txt +==24467== +==24467== +==24467== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24467== +==24467== +==24467== +==24467== HEAP SUMMARY: +==24467== in use at exit: 618,222 bytes in 8,238 blocks +==24467== total heap usage: 165,003 allocs, 156,765 frees, 1,356,836,034 bytes allocated +==24467== +==24467== LEAK SUMMARY: +==24467== definitely lost: 0 bytes in 0 blocks +==24467== indirectly lost: 0 bytes in 0 blocks +==24467== possibly lost: 0 bytes in 0 blocks +==24467== still reachable: 24 bytes in 2 blocks +==24467== suppressed: 618,198 bytes in 8,236 blocks +==24467== Reachable blocks (those to which a pointer was found) are not shown. +==24467== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24467== +==24467== For lists of detected and suppressed errors, rerun with: -s +==24467== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCylindrical2dNodesOnlyMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCylindrical2dNodesOnlyMesh_valgrind.txt new file mode 100644 index 000000000..2c0c6967a --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCylindrical2dNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24474== Memcheck, a memory error detector +==24474== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24474== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24474== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==24474== Parent PID: 23903 +==24474== +==24474== +==24474== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24474== Open file descriptor 12: +==24474== at 0x6D7D07D: pipe (pipe.c:29) +==24474== by 0x100C507D: ??? +==24474== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24474== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24474== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24474== by 0x7017D38: PetscInitialize (pinit.c:924) +==24474== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24474== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24474== by 0x126F1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24474== by 0x121B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24474== by 0x1248C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24474== by 0x124768: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24474== by 0x124DFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24474== by 0x11FFC5: main (TestCylindrical2dNodesOnlyMesh.cpp:19) +==24474== +==24474== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24474== at 0x6D81A1C: __open_nocancel (open64_nocancel.c:39) +==24474== by 0x6D05BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24474== by 0x658F822: ??? +==24474== by 0x658F96F: ??? +==24474== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24474== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24474== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24474== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24474== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24474== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24474== by 0x7017D38: PetscInitialize (pinit.c:924) +==24474== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24474== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24474== by 0x126F1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24474== by 0x121B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24474== by 0x1248C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24474== by 0x124768: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24474== by 0x124DFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24474== by 0x11FFC5: main (TestCylindrical2dNodesOnlyMesh.cpp:19) +==24474== +==24474== Open file descriptor 115: +==24474== +==24474== +==24474== Open file descriptor 112: +==24474== +==24474== +==24474== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dNodesOnlyMesh_valgrind.txt +==24474== +==24474== +==24474== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24474== +==24474== +==24474== +==24474== HEAP SUMMARY: +==24474== in use at exit: 618,222 bytes in 8,238 blocks +==24474== total heap usage: 58,517 allocs, 50,279 frees, 1,341,297,047 bytes allocated +==24474== +==24474== LEAK SUMMARY: +==24474== definitely lost: 0 bytes in 0 blocks +==24474== indirectly lost: 0 bytes in 0 blocks +==24474== possibly lost: 0 bytes in 0 blocks +==24474== still reachable: 24 bytes in 2 blocks +==24474== suppressed: 618,198 bytes in 8,236 blocks +==24474== Reachable blocks (those to which a pointer was found) are not shown. +==24474== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24474== +==24474== For lists of detected and suppressed errors, rerun with: -s +==24474== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCylindrical2dVertexMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCylindrical2dVertexMesh_valgrind.txt new file mode 100644 index 000000000..e2de4a4ad --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCylindrical2dVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24609== Memcheck, a memory error detector +==24609== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24609== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24609== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dVertexMesh -malloc_debug -malloc_dump -memory_info +==24609== Parent PID: 23903 +==24609== +==24609== +==24609== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24609== Open file descriptor 12: +==24609== at 0x823407D: pipe (pipe.c:29) +==24609== by 0x100C507D: ??? +==24609== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24609== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24609== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24609== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24609== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24609== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24609== by 0x129413: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24609== by 0x123FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24609== by 0x126C38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24609== by 0x126AD9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24609== by 0x12716F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24609== by 0x1223E5: main (TestCylindrical2dVertexMesh.cpp:19) +==24609== +==24609== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24609== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24609== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24609== by 0x658F822: ??? +==24609== by 0x658F96F: ??? +==24609== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24609== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24609== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24609== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24609== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24609== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24609== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24609== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24609== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24609== by 0x129413: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24609== by 0x123FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24609== by 0x126C38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24609== by 0x126AD9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24609== by 0x12716F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24609== by 0x1223E5: main (TestCylindrical2dVertexMesh.cpp:19) +==24609== +==24609== Open file descriptor 115: +==24609== +==24609== +==24609== Open file descriptor 112: +==24609== +==24609== +==24609== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dVertexMesh_valgrind.txt +==24609== +==24609== +==24609== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24609== +==24609== +==24609== +==24609== HEAP SUMMARY: +==24609== in use at exit: 618,222 bytes in 8,238 blocks +==24609== total heap usage: 152,181 allocs, 143,943 frees, 1,348,598,161 bytes allocated +==24609== +==24609== LEAK SUMMARY: +==24609== definitely lost: 0 bytes in 0 blocks +==24609== indirectly lost: 0 bytes in 0 blocks +==24609== possibly lost: 0 bytes in 0 blocks +==24609== still reachable: 24 bytes in 2 blocks +==24609== suppressed: 618,198 bytes in 8,236 blocks +==24609== Reachable blocks (those to which a pointer was found) are not shown. +==24609== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24609== +==24609== For lists of detected and suppressed errors, rerun with: -s +==24609== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestCylindricalHoneycombMeshGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCylindricalHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..66ce9e593 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCylindricalHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24487== Memcheck, a memory error detector +==24487== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24487== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24487== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindricalHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24487== Parent PID: 23903 +==24487== +==24487== +==24487== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24487== Open file descriptor 12: +==24487== at 0x810907D: pipe (pipe.c:29) +==24487== by 0x100C307D: ??? +==24487== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24487== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24487== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24487== by 0x667ED38: PetscInitialize (pinit.c:924) +==24487== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24487== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24487== by 0x11A3C5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24487== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24487== by 0x1181AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24487== by 0x11804C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24487== by 0x1186E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24487== by 0x113AF5: main (TestCylindricalHoneycombMeshGenerator.cpp:19) +==24487== +==24487== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24487== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24487== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24487== by 0x790D822: ??? +==24487== by 0x790D96F: ??? +==24487== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24487== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24487== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24487== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24487== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24487== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24487== by 0x667ED38: PetscInitialize (pinit.c:924) +==24487== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24487== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24487== by 0x11A3C5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24487== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24487== by 0x1181AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24487== by 0x11804C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24487== by 0x1186E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24487== by 0x113AF5: main (TestCylindricalHoneycombMeshGenerator.cpp:19) +==24487== +==24487== Open file descriptor 115: +==24487== +==24487== +==24487== Open file descriptor 112: +==24487== +==24487== +==24487== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindricalHoneycombMeshGenerator_valgrind.txt +==24487== +==24487== +==24487== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24487== +==24487== +==24487== +==24487== HEAP SUMMARY: +==24487== in use at exit: 618,222 bytes in 8,238 blocks +==24487== total heap usage: 92,046 allocs, 83,808 frees, 1,341,719,039 bytes allocated +==24487== +==24487== LEAK SUMMARY: +==24487== definitely lost: 0 bytes in 0 blocks +==24487== indirectly lost: 0 bytes in 0 blocks +==24487== possibly lost: 0 bytes in 0 blocks +==24487== still reachable: 24 bytes in 2 blocks +==24487== suppressed: 618,198 bytes in 8,236 blocks +==24487== Reachable blocks (those to which a pointer was found) are not shown. +==24487== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24487== +==24487== For lists of detected and suppressed errors, rerun with: -s +==24487== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..4abf3da44 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24610== Memcheck, a memory error detector +==24610== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24610== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24610== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindricalHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24610== Parent PID: 23903 +==24610== +==24610== +==24610== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24610== Open file descriptor 12: +==24610== at 0x810907D: pipe (pipe.c:29) +==24610== by 0x100C307D: ??? +==24610== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24610== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24610== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24610== by 0x667ED38: PetscInitialize (pinit.c:924) +==24610== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24610== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24610== by 0x11A15D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24610== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24610== by 0x1162D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24610== by 0x116176: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24610== by 0x11680D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24610== by 0x111D75: main (TestCylindricalHoneycombVertexMeshGenerator.cpp:19) +==24610== +==24610== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24610== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24610== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24610== by 0x790D822: ??? +==24610== by 0x790D96F: ??? +==24610== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24610== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24610== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24610== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24610== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24610== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24610== by 0x667ED38: PetscInitialize (pinit.c:924) +==24610== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24610== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24610== by 0x11A15D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24610== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24610== by 0x1162D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24610== by 0x116176: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24610== by 0x11680D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24610== by 0x111D75: main (TestCylindricalHoneycombVertexMeshGenerator.cpp:19) +==24610== +==24610== Open file descriptor 115: +==24610== +==24610== +==24610== Open file descriptor 112: +==24610== +==24610== +==24610== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt +==24610== +==24610== +==24610== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24610== +==24610== +==24610== +==24610== HEAP SUMMARY: +==24610== in use at exit: 618,222 bytes in 8,238 blocks +==24610== total heap usage: 50,611 allocs, 42,373 frees, 1,338,862,376 bytes allocated +==24610== +==24610== LEAK SUMMARY: +==24610== definitely lost: 0 bytes in 0 blocks +==24610== indirectly lost: 0 bytes in 0 blocks +==24610== possibly lost: 0 bytes in 0 blocks +==24610== still reachable: 24 bytes in 2 blocks +==24610== suppressed: 618,198 bytes in 8,236 blocks +==24610== Reachable blocks (those to which a pointer was found) are not shown. +==24610== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24610== +==24610== For lists of detected and suppressed errors, rerun with: -s +==24610== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestDebug_valgrind.txt b/log-files/2024-09-07_08-54-51/TestDebug_valgrind.txt new file mode 100644 index 000000000..49f16a3f3 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestDebug_valgrind.txt @@ -0,0 +1,73 @@ +==23964== Memcheck, a memory error detector +==23964== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23964== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23964== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestDebug -malloc_debug -malloc_dump -memory_info +==23964== Parent PID: 23903 +==23964== +==23964== +==23964== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23964== Open file descriptor 12: +==23964== at 0x4CB207D: pipe (pipe.c:29) +==23964== by 0xAEA507D: ??? +==23964== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23964== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23964== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23964== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23964== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23964== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23964== by 0x112F42: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23964== by 0x10EE33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23964== by 0x11100C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23964== by 0x110F08: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23964== by 0x11151B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23964== by 0x10D635: main (TestDebug.cpp:18) +==23964== +==23964== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23964== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==23964== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23964== by 0x4934822: ??? +==23964== by 0x493496F: ??? +==23964== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23964== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23964== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23964== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23964== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23964== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23964== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23964== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23964== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23964== by 0x112F42: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23964== by 0x10EE33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23964== by 0x11100C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23964== by 0x110F08: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23964== by 0x11151B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23964== by 0x10D635: main (TestDebug.cpp:18) +==23964== +==23964== Open file descriptor 115: +==23964== +==23964== +==23964== Open file descriptor 112: +==23964== +==23964== +==23964== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDebug_valgrind.txt +==23964== +==23964== +==23964== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23964== +==23964== +==23964== +==23964== HEAP SUMMARY: +==23964== in use at exit: 617,838 bytes in 8,238 blocks +==23964== total heap usage: 44,920 allocs, 36,682 frees, 1,340,566,273 bytes allocated +==23964== +==23964== LEAK SUMMARY: +==23964== definitely lost: 0 bytes in 0 blocks +==23964== indirectly lost: 0 bytes in 0 blocks +==23964== possibly lost: 0 bytes in 0 blocks +==23964== still reachable: 24 bytes in 2 blocks +==23964== suppressed: 617,814 bytes in 8,236 blocks +==23964== Reachable blocks (those to which a pointer was found) are not shown. +==23964== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23964== +==23964== For lists of detected and suppressed errors, rerun with: -s +==23964== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestDeltaNotchModifier_valgrind.txt b/log-files/2024-09-07_08-54-51/TestDeltaNotchModifier_valgrind.txt new file mode 100644 index 000000000..99ec6fb60 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestDeltaNotchModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26101== Memcheck, a memory error detector +==26101== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26101== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26101== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDeltaNotchModifier -malloc_debug -malloc_dump -memory_info +==26101== Parent PID: 23903 +==26101== +==26101== +==26101== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26101== Open file descriptor 12: +==26101== at 0xF83B07D: pipe (pipe.c:29) +==26101== by 0x196AD07D: ??? +==26101== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26101== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26101== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26101== by 0x10127D38: PetscInitialize (pinit.c:924) +==26101== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26101== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26101== by 0x208508: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26101== by 0x1FFF99: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26101== by 0x203992: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26101== by 0x203832: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26101== by 0x203EC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26101== by 0x1FE3B5: main (TestDeltaNotchModifier.cpp:19) +==26101== +==26101== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26101== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==26101== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26101== by 0xF136822: ??? +==26101== by 0xF13696F: ??? +==26101== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26101== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26101== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26101== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26101== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26101== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26101== by 0x10127D38: PetscInitialize (pinit.c:924) +==26101== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26101== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26101== by 0x208508: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26101== by 0x1FFF99: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26101== by 0x203992: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26101== by 0x203832: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26101== by 0x203EC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26101== by 0x1FE3B5: main (TestDeltaNotchModifier.cpp:19) +==26101== +==26101== Open file descriptor 115: +==26101== +==26101== +==26101== Open file descriptor 112: +==26101== +==26101== +==26101== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDeltaNotchModifier_valgrind.txt +==26101== +==26101== +==26101== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26101== +==26101== +==26101== +==26101== HEAP SUMMARY: +==26101== in use at exit: 618,279 bytes in 8,235 blocks +==26101== total heap usage: 5,565,412 allocs, 5,557,177 frees, 8,883,972,853 bytes allocated +==26101== +==26101== LEAK SUMMARY: +==26101== definitely lost: 0 bytes in 0 blocks +==26101== indirectly lost: 0 bytes in 0 blocks +==26101== possibly lost: 0 bytes in 0 blocks +==26101== still reachable: 56 bytes in 3 blocks +==26101== suppressed: 618,223 bytes in 8,232 blocks +==26101== Reachable blocks (those to which a pointer was found) are not shown. +==26101== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26101== +==26101== For lists of detected and suppressed errors, rerun with: -s +==26101== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestDeltaNotchOdeSystem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestDeltaNotchOdeSystem_valgrind.txt new file mode 100644 index 000000000..51b9b86fd --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestDeltaNotchOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25757== Memcheck, a memory error detector +==25757== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25757== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25757== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDeltaNotchOdeSystem -malloc_debug -malloc_dump -memory_info +==25757== Parent PID: 23903 +==25757== +==25757== +==25757== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25757== Open file descriptor 12: +==25757== at 0xEF9407D: pipe (pipe.c:29) +==25757== by 0x196AC07D: ??? +==25757== by 0x13C514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25757== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25757== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25757== by 0xD871D38: PetscInitialize (pinit.c:924) +==25757== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25757== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25757== by 0x123193: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25757== by 0x11E6C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25757== by 0x120CDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25757== by 0x120BD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25757== by 0x1211EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25757== by 0x11CEC5: main (TestDeltaNotchOdeSystem.cpp:18) +==25757== +==25757== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25757== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25757== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25757== by 0xD71D822: ??? +==25757== by 0xD71D96F: ??? +==25757== by 0x13CF66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25757== by 0x13CF6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25757== by 0x13CAC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25757== by 0x13C512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25757== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25757== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25757== by 0xD871D38: PetscInitialize (pinit.c:924) +==25757== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25757== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25757== by 0x123193: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25757== by 0x11E6C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25757== by 0x120CDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25757== by 0x120BD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25757== by 0x1211EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25757== by 0x11CEC5: main (TestDeltaNotchOdeSystem.cpp:18) +==25757== +==25757== Open file descriptor 115: +==25757== +==25757== +==25757== Open file descriptor 112: +==25757== +==25757== +==25757== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDeltaNotchOdeSystem_valgrind.txt +==25757== +==25757== +==25757== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25757== +==25757== +==25757== +==25757== HEAP SUMMARY: +==25757== in use at exit: 618,318 bytes in 8,238 blocks +==25757== total heap usage: 53,419 allocs, 45,181 frees, 1,338,943,261 bytes allocated +==25757== +==25757== LEAK SUMMARY: +==25757== definitely lost: 0 bytes in 0 blocks +==25757== indirectly lost: 0 bytes in 0 blocks +==25757== possibly lost: 0 bytes in 0 blocks +==25757== still reachable: 24 bytes in 2 blocks +==25757== suppressed: 618,294 bytes in 8,236 blocks +==25757== Reachable blocks (those to which a pointer was found) are not shown. +==25757== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25757== +==25757== For lists of detected and suppressed errors, rerun with: -s +==25757== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestDiscreteSystemForceCalculator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestDiscreteSystemForceCalculator_valgrind.txt new file mode 100644 index 000000000..ce33de5fb --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestDiscreteSystemForceCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==25886== Memcheck, a memory error detector +==25886== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25886== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25886== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDiscreteSystemForceCalculator -malloc_debug -malloc_dump -memory_info +==25886== Parent PID: 23903 +==25886== +==25886== +==25886== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25886== Open file descriptor 12: +==25886== at 0x10CB007D: pipe (pipe.c:29) +==25886== by 0x196AD07D: ??? +==25886== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25886== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25886== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25886== by 0xF225D38: PetscInitialize (pinit.c:924) +==25886== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25886== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25886== by 0x12A32F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25886== by 0x123F2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25886== by 0x1269BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25886== by 0x12685E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25886== by 0x126EF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25886== by 0x122355: main (TestDiscreteSystemForceCalculator.cpp:19) +==25886== +==25886== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25886== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==25886== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25886== by 0x104B4822: ??? +==25886== by 0x104B496F: ??? +==25886== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25886== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25886== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25886== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25886== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25886== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25886== by 0xF225D38: PetscInitialize (pinit.c:924) +==25886== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25886== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25886== by 0x12A32F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25886== by 0x123F2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25886== by 0x1269BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25886== by 0x12685E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25886== by 0x126EF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25886== by 0x122355: main (TestDiscreteSystemForceCalculator.cpp:19) +==25886== +==25886== Open file descriptor 115: +==25886== +==25886== +==25886== Open file descriptor 112: +==25886== +==25886== +==25886== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDiscreteSystemForceCalculator_valgrind.txt +==25886== +==25886== +==25886== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25886== +==25886== +==25886== +==25886== HEAP SUMMARY: +==25886== in use at exit: 618,350 bytes in 8,239 blocks +==25886== total heap usage: 123,058 allocs, 114,819 frees, 1,345,486,164 bytes allocated +==25886== +==25886== LEAK SUMMARY: +==25886== definitely lost: 0 bytes in 0 blocks +==25886== indirectly lost: 0 bytes in 0 blocks +==25886== possibly lost: 0 bytes in 0 blocks +==25886== still reachable: 56 bytes in 3 blocks +==25886== suppressed: 618,294 bytes in 8,236 blocks +==25886== Reachable blocks (those to which a pointer was found) are not shown. +==25886== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25886== +==25886== For lists of detected and suppressed errors, rerun with: -s +==25886== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestDistanceMapCalculator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestDistanceMapCalculator_valgrind.txt new file mode 100644 index 000000000..60a11d97b --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestDistanceMapCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==24570== Memcheck, a memory error detector +==24570== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24570== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24570== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistanceMapCalculator -malloc_debug -malloc_dump -memory_info +==24570== Parent PID: 23903 +==24570== +==24570== +==24570== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24570== Open file descriptor 12: +==24570== at 0x6D3B07D: pipe (pipe.c:29) +==24570== by 0x100C507D: ??? +==24570== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24570== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24570== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24570== by 0x7017D38: PetscInitialize (pinit.c:924) +==24570== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24570== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24570== by 0x121308: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24570== by 0x11C90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24570== by 0x11F030: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24570== by 0x11EED0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24570== by 0x11F567: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24570== by 0x11AD35: main (TestDistanceMapCalculator.cpp:19) +==24570== +==24570== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24570== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24570== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24570== by 0x658F822: ??? +==24570== by 0x658F96F: ??? +==24570== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24570== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24570== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24570== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24570== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24570== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24570== by 0x7017D38: PetscInitialize (pinit.c:924) +==24570== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24570== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24570== by 0x121308: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24570== by 0x11C90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24570== by 0x11F030: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24570== by 0x11EED0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24570== by 0x11F567: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24570== by 0x11AD35: main (TestDistanceMapCalculator.cpp:19) +==24570== +==24570== Open file descriptor 115: +==24570== +==24570== +==24570== Open file descriptor 112: +==24570== +==24570== +==24570== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistanceMapCalculator_valgrind.txt +==24570== +==24570== +==24570== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24570== +==24570== +==24570== +==24570== HEAP SUMMARY: +==24570== in use at exit: 620,703 bytes in 8,235 blocks +==24570== total heap usage: 7,651,832 allocs, 7,643,597 frees, 1,604,363,382 bytes allocated +==24570== +==24570== LEAK SUMMARY: +==24570== definitely lost: 0 bytes in 0 blocks +==24570== indirectly lost: 0 bytes in 0 blocks +==24570== possibly lost: 0 bytes in 0 blocks +==24570== still reachable: 2,576 bytes in 3 blocks +==24570== suppressed: 618,127 bytes in 8,232 blocks +==24570== Reachable blocks (those to which a pointer was found) are not shown. +==24570== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24570== +==24570== For lists of detected and suppressed errors, rerun with: -s +==24570== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestDistributedBoxCollection_valgrind.txt b/log-files/2024-09-07_08-54-51/TestDistributedBoxCollection_valgrind.txt new file mode 100644 index 000000000..6a4c536a3 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestDistributedBoxCollection_valgrind.txt @@ -0,0 +1,73 @@ +==24567== Memcheck, a memory error detector +==24567== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24567== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24567== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedBoxCollection -malloc_debug -malloc_dump -memory_info +==24567== Parent PID: 23903 +==24567== +==24567== +==24567== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24567== Open file descriptor 12: +==24567== at 0x823407D: pipe (pipe.c:29) +==24567== by 0x100C507D: ??? +==24567== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24567== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24567== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24567== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24567== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24567== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24567== by 0x161C60: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24567== by 0x15BFE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24567== by 0x15F37A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24567== by 0x15F21A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24567== by 0x15F8B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24567== by 0x15A405: main (TestDistributedBoxCollection.cpp:19) +==24567== +==24567== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24567== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24567== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24567== by 0x658F822: ??? +==24567== by 0x658F96F: ??? +==24567== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24567== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24567== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24567== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24567== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24567== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24567== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24567== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24567== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24567== by 0x161C60: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24567== by 0x15BFE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24567== by 0x15F37A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24567== by 0x15F21A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24567== by 0x15F8B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24567== by 0x15A405: main (TestDistributedBoxCollection.cpp:19) +==24567== +==24567== Open file descriptor 115: +==24567== +==24567== +==24567== Open file descriptor 112: +==24567== +==24567== +==24567== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedBoxCollection_valgrind.txt +==24567== +==24567== +==24567== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24567== +==24567== +==24567== +==24567== HEAP SUMMARY: +==24567== in use at exit: 618,222 bytes in 8,238 blocks +==24567== total heap usage: 179,701 allocs, 171,463 frees, 1,440,800,022 bytes allocated +==24567== +==24567== LEAK SUMMARY: +==24567== definitely lost: 0 bytes in 0 blocks +==24567== indirectly lost: 0 bytes in 0 blocks +==24567== possibly lost: 0 bytes in 0 blocks +==24567== still reachable: 24 bytes in 2 blocks +==24567== suppressed: 618,198 bytes in 8,236 blocks +==24567== Reachable blocks (those to which a pointer was found) are not shown. +==24567== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24567== +==24567== For lists of detected and suppressed errors, rerun with: -s +==24567== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestDistributedQuadraticMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestDistributedQuadraticMesh_valgrind.txt new file mode 100644 index 000000000..5a090042e --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestDistributedQuadraticMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24287== Memcheck, a memory error detector +==24287== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24287== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24287== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedQuadraticMesh -malloc_debug -malloc_dump -memory_info +==24287== Parent PID: 23903 +==24287== +==24287== +==24287== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24287== Open file descriptor 12: +==24287== at 0x6D7D07D: pipe (pipe.c:29) +==24287== by 0x100C507D: ??? +==24287== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24287== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24287== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24287== by 0x7017D38: PetscInitialize (pinit.c:924) +==24287== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24287== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24287== by 0x12A04E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24287== by 0x124E9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24287== by 0x127B7A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24287== by 0x127A1A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24287== by 0x1280B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24287== by 0x1232C5: main (TestDistributedQuadraticMesh.cpp:19) +==24287== +==24287== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24287== at 0x6D81A1C: __open_nocancel (open64_nocancel.c:39) +==24287== by 0x6D05BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24287== by 0x658F822: ??? +==24287== by 0x658F96F: ??? +==24287== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24287== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24287== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24287== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24287== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24287== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24287== by 0x7017D38: PetscInitialize (pinit.c:924) +==24287== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24287== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24287== by 0x12A04E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24287== by 0x124E9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24287== by 0x127B7A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24287== by 0x127A1A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24287== by 0x1280B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24287== by 0x1232C5: main (TestDistributedQuadraticMesh.cpp:19) +==24287== +==24287== Open file descriptor 115: +==24287== +==24287== +==24287== Open file descriptor 112: +==24287== +==24287== +==24287== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedQuadraticMesh_valgrind.txt +==24287== +==24287== +==24287== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24287== +==24287== +==24287== +==24287== HEAP SUMMARY: +==24287== in use at exit: 618,222 bytes in 8,238 blocks +==24287== total heap usage: 204,142 allocs, 195,904 frees, 1,346,746,238 bytes allocated +==24287== +==24287== LEAK SUMMARY: +==24287== definitely lost: 0 bytes in 0 blocks +==24287== indirectly lost: 0 bytes in 0 blocks +==24287== possibly lost: 0 bytes in 0 blocks +==24287== still reachable: 24 bytes in 2 blocks +==24287== suppressed: 618,198 bytes in 8,236 blocks +==24287== Reachable blocks (those to which a pointer was found) are not shown. +==24287== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24287== +==24287== For lists of detected and suppressed errors, rerun with: -s +==24287== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestDistributedTetrahedralMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestDistributedTetrahedralMesh_valgrind.txt new file mode 100644 index 000000000..7fc1635c2 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestDistributedTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24292== Memcheck, a memory error detector +==24292== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24292== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24292== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==24292== Parent PID: 23903 +==24292== +==24292== +==24292== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24292== Open file descriptor 12: +==24292== at 0x823407D: pipe (pipe.c:29) +==24292== by 0x100C507D: ??? +==24292== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24292== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24292== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24292== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24292== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24292== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24292== by 0x1464DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24292== by 0x13EB23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24292== by 0x141FCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24292== by 0x141E6E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24292== by 0x142505: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24292== by 0x13CE05: main (TestDistributedTetrahedralMesh.cpp:19) +==24292== +==24292== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24292== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24292== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24292== by 0x658F822: ??? +==24292== by 0x658F96F: ??? +==24292== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24292== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24292== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24292== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24292== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24292== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24292== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24292== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24292== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24292== by 0x1464DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24292== by 0x13EB23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24292== by 0x141FCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24292== by 0x141E6E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24292== by 0x142505: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24292== by 0x13CE05: main (TestDistributedTetrahedralMesh.cpp:19) +==24292== +==24292== Open file descriptor 115: +==24292== +==24292== +==24292== Open file descriptor 112: +==24292== +==24292== +==24292== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedTetrahedralMesh_valgrind.txt +==24292== +==24292== +==24292== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24292== +==24292== +==24292== +==24292== HEAP SUMMARY: +==24292== in use at exit: 620,774 bytes in 8,239 blocks +==24292== total heap usage: 3,378,449 allocs, 3,370,210 frees, 1,457,879,417 bytes allocated +==24292== +==24292== LEAK SUMMARY: +==24292== definitely lost: 0 bytes in 0 blocks +==24292== indirectly lost: 0 bytes in 0 blocks +==24292== possibly lost: 0 bytes in 0 blocks +==24292== still reachable: 2,576 bytes in 3 blocks +==24292== suppressed: 618,198 bytes in 8,236 blocks +==24292== Reachable blocks (those to which a pointer was found) are not shown. +==24292== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24292== +==24292== For lists of detected and suppressed errors, rerun with: -s +==24292== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestDistributedVector_valgrind.txt b/log-files/2024-09-07_08-54-51/TestDistributedVector_valgrind.txt new file mode 100644 index 000000000..35824a1ef --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestDistributedVector_valgrind.txt @@ -0,0 +1,73 @@ +==23965== Memcheck, a memory error detector +==23965== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23965== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23965== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestDistributedVector -malloc_debug -malloc_dump -memory_info +==23965== Parent PID: 23903 +==23965== +==23965== +==23965== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23965== Open file descriptor 12: +==23965== at 0x607407D: pipe (pipe.c:29) +==23965== by 0xAEA507D: ??? +==23965== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23965== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23965== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23965== by 0x4A88D38: PetscInitialize (pinit.c:924) +==23965== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23965== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23965== by 0x129F94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23965== by 0x124F49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23965== by 0x127BA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23965== by 0x127A48: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23965== by 0x1280DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23965== by 0x123365: main (TestDistributedVector.cpp:19) +==23965== +==23965== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23965== at 0x6078A1C: __open_nocancel (open64_nocancel.c:39) +==23965== by 0x5FFCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23965== by 0x4934822: ??? +==23965== by 0x493496F: ??? +==23965== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23965== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23965== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23965== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23965== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23965== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23965== by 0x4A88D38: PetscInitialize (pinit.c:924) +==23965== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23965== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23965== by 0x129F94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23965== by 0x124F49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23965== by 0x127BA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23965== by 0x127A48: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23965== by 0x1280DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23965== by 0x123365: main (TestDistributedVector.cpp:19) +==23965== +==23965== Open file descriptor 115: +==23965== +==23965== +==23965== Open file descriptor 112: +==23965== +==23965== +==23965== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedVector_valgrind.txt +==23965== +==23965== +==23965== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23965== +==23965== +==23965== +==23965== HEAP SUMMARY: +==23965== in use at exit: 617,838 bytes in 8,238 blocks +==23965== total heap usage: 46,125 allocs, 37,887 frees, 1,338,418,437 bytes allocated +==23965== +==23965== LEAK SUMMARY: +==23965== definitely lost: 0 bytes in 0 blocks +==23965== indirectly lost: 0 bytes in 0 blocks +==23965== possibly lost: 0 bytes in 0 blocks +==23965== still reachable: 24 bytes in 2 blocks +==23965== suppressed: 617,814 bytes in 8,236 blocks +==23965== Reachable blocks (those to which a pointer was found) are not shown. +==23965== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23965== +==23965== For lists of detected and suppressed errors, rerun with: -s +==23965== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestDivisionBiasTrackingModifier_valgrind.txt b/log-files/2024-09-07_08-54-51/TestDivisionBiasTrackingModifier_valgrind.txt new file mode 100644 index 000000000..b488dd7fd --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestDivisionBiasTrackingModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26102== Memcheck, a memory error detector +==26102== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26102== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26102== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDivisionBiasTrackingModifier -malloc_debug -malloc_dump -memory_info +==26102== Parent PID: 23903 +==26102== +==26102== +==26102== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26102== Open file descriptor 12: +==26102== at 0xF83B07D: pipe (pipe.c:29) +==26102== by 0x196AD07D: ??? +==26102== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26102== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26102== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26102== by 0x10127D38: PetscInitialize (pinit.c:924) +==26102== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26102== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26102== by 0x1FE694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26102== by 0x1F67DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26102== by 0x1F9F72: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26102== by 0x1F9E6D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26102== by 0x1FA481: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26102== by 0x1F4FD5: main (TestDivisionBiasTrackingModifier.cpp:18) +==26102== +==26102== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26102== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==26102== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26102== by 0xF136822: ??? +==26102== by 0xF13696F: ??? +==26102== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26102== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26102== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26102== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26102== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26102== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26102== by 0x10127D38: PetscInitialize (pinit.c:924) +==26102== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26102== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26102== by 0x1FE694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26102== by 0x1F67DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26102== by 0x1F9F72: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26102== by 0x1F9E6D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26102== by 0x1FA481: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26102== by 0x1F4FD5: main (TestDivisionBiasTrackingModifier.cpp:18) +==26102== +==26102== Open file descriptor 115: +==26102== +==26102== +==26102== Open file descriptor 112: +==26102== +==26102== +==26102== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDivisionBiasTrackingModifier_valgrind.txt +==26102== +==26102== +==26102== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26102== +==26102== +==26102== +==26102== HEAP SUMMARY: +==26102== in use at exit: 618,279 bytes in 8,235 blocks +==26102== total heap usage: 7,541,913 allocs, 7,533,678 frees, 2,725,541,862 bytes allocated +==26102== +==26102== LEAK SUMMARY: +==26102== definitely lost: 0 bytes in 0 blocks +==26102== indirectly lost: 0 bytes in 0 blocks +==26102== possibly lost: 0 bytes in 0 blocks +==26102== still reachable: 56 bytes in 3 blocks +==26102== suppressed: 618,223 bytes in 8,232 blocks +==26102== Reachable blocks (those to which a pointer was found) are not shown. +==26102== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26102== +==26102== For lists of detected and suppressed errors, rerun with: -s +==26102== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestDynamicVentilation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestDynamicVentilation_valgrind.txt new file mode 100644 index 000000000..7cec6dee5 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestDynamicVentilation_valgrind.txt @@ -0,0 +1,73 @@ +==40954== Memcheck, a memory error detector +==40954== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40954== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40954== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestDynamicVentilation -malloc_debug -malloc_dump -memory_info +==40954== Parent PID: 23903 +==40954== +==40954== +==40954== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40954== Open file descriptor 12: +==40954== at 0x51FE07D: pipe (pipe.c:29) +==40954== by 0x107A507D: ??? +==40954== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40954== by 0x6779418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40954== by 0x6712D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40954== by 0x5409D38: PetscInitialize (pinit.c:924) +==40954== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40954== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40954== by 0x11807E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40954== by 0x11378D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40954== by 0x1160AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40954== by 0x115F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40954== by 0x1165E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40954== by 0x111BB5: main (TestDynamicVentilation.cpp:19) +==40954== +==40954== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40954== at 0x5202A1C: __open_nocancel (open64_nocancel.c:39) +==40954== by 0x5186BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40954== by 0x4A52822: ??? +==40954== by 0x4A5296F: ??? +==40954== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40954== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40954== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40954== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40954== by 0x6779418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40954== by 0x6712D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40954== by 0x5409D38: PetscInitialize (pinit.c:924) +==40954== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40954== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40954== by 0x11807E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40954== by 0x11378D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40954== by 0x1160AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40954== by 0x115F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40954== by 0x1165E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40954== by 0x111BB5: main (TestDynamicVentilation.cpp:19) +==40954== +==40954== Open file descriptor 115: +==40954== +==40954== +==40954== Open file descriptor 112: +==40954== +==40954== +==40954== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDynamicVentilation_valgrind.txt +==40954== +==40954== +==40954== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40954== +==40954== +==40954== +==40954== HEAP SUMMARY: +==40954== in use at exit: 618,318 bytes in 8,238 blocks +==40954== total heap usage: 74,110 allocs, 65,872 frees, 1,350,507,579 bytes allocated +==40954== +==40954== LEAK SUMMARY: +==40954== definitely lost: 0 bytes in 0 blocks +==40954== indirectly lost: 0 bytes in 0 blocks +==40954== possibly lost: 0 bytes in 0 blocks +==40954== still reachable: 24 bytes in 2 blocks +==40954== suppressed: 618,294 bytes in 8,236 blocks +==40954== Reachable blocks (those to which a pointer was found) are not shown. +==40954== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40954== +==40954== For lists of detected and suppressed errors, rerun with: -s +==40954== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestDynamicallyLoadedCellModels_valgrind.txt b/log-files/2024-09-07_08-54-51/TestDynamicallyLoadedCellModels_valgrind.txt new file mode 100644 index 000000000..ac850cea1 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestDynamicallyLoadedCellModels_valgrind.txt @@ -0,0 +1,73 @@ +==41539== Memcheck, a memory error detector +==41539== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41539== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41539== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestDynamicallyLoadedCellModels -malloc_debug -malloc_dump -memory_info +==41539== Parent PID: 23903 +==41539== +==41539== +==41539== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41539== Open file descriptor 12: +==41539== at 0x882107D: pipe (pipe.c:29) +==41539== by 0x1432407D: ??? +==41539== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41539== by 0x9F1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41539== by 0x9EB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41539== by 0x8BACD38: PetscInitialize (pinit.c:924) +==41539== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41539== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41539== by 0x123164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41539== by 0x11E28F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41539== by 0x120CE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41539== by 0x120B88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41539== by 0x12121F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41539== by 0x119055: main (TestDynamicallyLoadedCellModels.cpp:19) +==41539== +==41539== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41539== at 0x8825A1C: __open_nocancel (open64_nocancel.c:39) +==41539== by 0x87A9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41539== by 0x8489822: ??? +==41539== by 0x848996F: ??? +==41539== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41539== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41539== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41539== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41539== by 0x9F1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41539== by 0x9EB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41539== by 0x8BACD38: PetscInitialize (pinit.c:924) +==41539== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41539== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41539== by 0x123164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41539== by 0x11E28F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41539== by 0x120CE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41539== by 0x120B88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41539== by 0x12121F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41539== by 0x119055: main (TestDynamicallyLoadedCellModels.cpp:19) +==41539== +==41539== Open file descriptor 115: +==41539== +==41539== +==41539== Open file descriptor 112: +==41539== +==41539== +==41539== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDynamicallyLoadedCellModels_valgrind.txt +==41539== +==41539== +==41539== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41539== +==41539== +==41539== +==41539== HEAP SUMMARY: +==41539== in use at exit: 632,404 bytes in 8,265 blocks +==41539== total heap usage: 958,949 allocs, 950,684 frees, 1,914,138,697 bytes allocated +==41539== +==41539== LEAK SUMMARY: +==41539== definitely lost: 0 bytes in 0 blocks +==41539== indirectly lost: 0 bytes in 0 blocks +==41539== possibly lost: 0 bytes in 0 blocks +==41539== still reachable: 14,165 bytes in 33 blocks +==41539== suppressed: 618,239 bytes in 8,232 blocks +==41539== Reachable blocks (those to which a pointer was found) are not shown. +==41539== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41539== +==41539== For lists of detected and suppressed errors, rerun with: -s +==41539== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2024-09-07_08-54-51/TestEdgeInteriorSrn_valgrind.txt b/log-files/2024-09-07_08-54-51/TestEdgeInteriorSrn_valgrind.txt new file mode 100644 index 000000000..c04911884 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestEdgeInteriorSrn_valgrind.txt @@ -0,0 +1,73 @@ +==25355== Memcheck, a memory error detector +==25355== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25355== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25355== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEdgeInteriorSrn -malloc_debug -malloc_dump -memory_info +==25355== Parent PID: 23903 +==25355== +==25355== +==25355== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25355== Open file descriptor 12: +==25355== at 0xF83B07D: pipe (pipe.c:29) +==25355== by 0x196AD07D: ??? +==25355== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25355== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25355== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25355== by 0x10127D38: PetscInitialize (pinit.c:924) +==25355== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25355== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25355== by 0x130B3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25355== by 0x12B59D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25355== by 0x12E2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25355== by 0x12E14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25355== by 0x12E7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25355== by 0x1299C5: main (TestEdgeInteriorSrn.cpp:19) +==25355== +==25355== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25355== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==25355== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25355== by 0xF136822: ??? +==25355== by 0xF13696F: ??? +==25355== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25355== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25355== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25355== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25355== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25355== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25355== by 0x10127D38: PetscInitialize (pinit.c:924) +==25355== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25355== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25355== by 0x130B3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25355== by 0x12B59D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25355== by 0x12E2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25355== by 0x12E14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25355== by 0x12E7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25355== by 0x1299C5: main (TestEdgeInteriorSrn.cpp:19) +==25355== +==25355== Open file descriptor 115: +==25355== +==25355== +==25355== Open file descriptor 112: +==25355== +==25355== +==25355== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEdgeInteriorSrn_valgrind.txt +==25355== +==25355== +==25355== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25355== +==25355== +==25355== +==25355== HEAP SUMMARY: +==25355== in use at exit: 618,366 bytes in 8,240 blocks +==25355== total heap usage: 90,090 allocs, 81,850 frees, 1,342,348,745 bytes allocated +==25355== +==25355== LEAK SUMMARY: +==25355== definitely lost: 0 bytes in 0 blocks +==25355== indirectly lost: 0 bytes in 0 blocks +==25355== possibly lost: 0 bytes in 0 blocks +==25355== still reachable: 72 bytes in 4 blocks +==25355== suppressed: 618,294 bytes in 8,236 blocks +==25355== Reachable blocks (those to which a pointer was found) are not shown. +==25355== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25355== +==25355== For lists of detected and suppressed errors, rerun with: -s +==25355== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestEdge_valgrind.txt b/log-files/2024-09-07_08-54-51/TestEdge_valgrind.txt new file mode 100644 index 000000000..13c5506d2 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestEdge_valgrind.txt @@ -0,0 +1,73 @@ +==24466== Memcheck, a memory error detector +==24466== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24466== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24466== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestEdge -malloc_debug -malloc_dump -memory_info +==24466== Parent PID: 23903 +==24466== +==24466== +==24466== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24466== Open file descriptor 12: +==24466== at 0x814B07D: pipe (pipe.c:29) +==24466== by 0x100C507D: ??? +==24466== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24466== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24466== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24466== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24466== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24466== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24466== by 0x15EC55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24466== by 0x15930F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24466== by 0x15C29A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24466== by 0x15C196: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24466== by 0x15C7A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24466== by 0x157B05: main (TestEdge.cpp:18) +==24466== +==24466== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24466== at 0x814FA1C: __open_nocancel (open64_nocancel.c:39) +==24466== by 0x80D3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24466== by 0x658F822: ??? +==24466== by 0x658F96F: ??? +==24466== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24466== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24466== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24466== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24466== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24466== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24466== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24466== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24466== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24466== by 0x15EC55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24466== by 0x15930F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24466== by 0x15C29A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24466== by 0x15C196: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24466== by 0x15C7A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24466== by 0x157B05: main (TestEdge.cpp:18) +==24466== +==24466== Open file descriptor 115: +==24466== +==24466== +==24466== Open file descriptor 112: +==24466== +==24466== +==24466== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEdge_valgrind.txt +==24466== +==24466== +==24466== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24466== +==24466== +==24466== +==24466== HEAP SUMMARY: +==24466== in use at exit: 618,222 bytes in 8,238 blocks +==24466== total heap usage: 48,025 allocs, 39,787 frees, 1,338,475,939 bytes allocated +==24466== +==24466== LEAK SUMMARY: +==24466== definitely lost: 0 bytes in 0 blocks +==24466== indirectly lost: 0 bytes in 0 blocks +==24466== possibly lost: 0 bytes in 0 blocks +==24466== still reachable: 24 bytes in 2 blocks +==24466== suppressed: 618,198 bytes in 8,236 blocks +==24466== Reachable blocks (those to which a pointer was found) are not shown. +==24466== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24466== +==24466== For lists of detected and suppressed errors, rerun with: -s +==24466== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestElectroMechanicsExactSolution_valgrind.txt b/log-files/2024-09-07_08-54-51/TestElectroMechanicsExactSolution_valgrind.txt new file mode 100644 index 000000000..ea62939ed --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestElectroMechanicsExactSolution_valgrind.txt @@ -0,0 +1,73 @@ +==43064== Memcheck, a memory error detector +==43064== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43064== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43064== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectroMechanicsExactSolution -malloc_debug -malloc_dump -memory_info +==43064== Parent PID: 23903 +==43064== +==43064== +==43064== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43064== Open file descriptor 12: +==43064== at 0xAAEE07D: pipe (pipe.c:29) +==43064== by 0x1432407D: ??? +==43064== by 0xD5A94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43064== by 0xA2F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43064== by 0xA28ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43064== by 0xACF7D38: PetscInitialize (pinit.c:924) +==43064== by 0xA1B71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43064== by 0xA1B7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43064== by 0x12D4D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43064== by 0x12824F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43064== by 0x12ADF6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43064== by 0x12ACF1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43064== by 0x12B305: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43064== by 0x126095: main (TestElectroMechanicsExactSolution.cpp:18) +==43064== +==43064== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43064== at 0xAAF2A1C: __open_nocancel (open64_nocancel.c:39) +==43064== by 0xAA76BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43064== by 0xA1F1822: ??? +==43064== by 0xA1F196F: ??? +==43064== by 0xD64E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43064== by 0xD64E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43064== by 0xD604922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43064== by 0xD5A92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43064== by 0xA2F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43064== by 0xA28ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43064== by 0xACF7D38: PetscInitialize (pinit.c:924) +==43064== by 0xA1B71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43064== by 0xA1B7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43064== by 0x12D4D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43064== by 0x12824F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43064== by 0x12ADF6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43064== by 0x12ACF1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43064== by 0x12B305: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43064== by 0x126095: main (TestElectroMechanicsExactSolution.cpp:18) +==43064== +==43064== Open file descriptor 115: +==43064== +==43064== +==43064== Open file descriptor 112: +==43064== +==43064== +==43064== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectroMechanicsExactSolution_valgrind.txt +==43064== +==43064== +==43064== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43064== +==43064== +==43064== +==43064== HEAP SUMMARY: +==43064== in use at exit: 618,743 bytes in 8,244 blocks +==43064== total heap usage: 1,257,384 allocs, 1,249,140 frees, 1,488,137,250 bytes allocated +==43064== +==43064== LEAK SUMMARY: +==43064== definitely lost: 0 bytes in 0 blocks +==43064== indirectly lost: 0 bytes in 0 blocks +==43064== possibly lost: 0 bytes in 0 blocks +==43064== still reachable: 24 bytes in 2 blocks +==43064== suppressed: 618,719 bytes in 8,242 blocks +==43064== Reachable blocks (those to which a pointer was found) are not shown. +==43064== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43064== +==43064== For lists of detected and suppressed errors, rerun with: -s +==43064== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestElectroMechanicsProblemDefinition_valgrind.txt b/log-files/2024-09-07_08-54-51/TestElectroMechanicsProblemDefinition_valgrind.txt new file mode 100644 index 000000000..978637852 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestElectroMechanicsProblemDefinition_valgrind.txt @@ -0,0 +1,36 @@ +==43055== Memcheck, a memory error detector +==43055== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43055== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43055== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectroMechanicsProblemDefinition -malloc_debug -malloc_dump -memory_info +==43055== Parent PID: 23903 +==43055== +==43055== +==43055== FILE DESCRIPTORS: 7 open (3 std) at exit. +==43055== Open file descriptor 115: +==43055== +==43055== +==43055== Open file descriptor 112: +==43055== +==43055== +==43055== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectroMechanicsProblemDefinition_valgrind.txt +==43055== +==43055== +==43055== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43055== +==43055== +==43055== +==43055== HEAP SUMMARY: +==43055== in use at exit: 24 bytes in 2 blocks +==43055== total heap usage: 13,908 allocs, 13,906 frees, 1,516,395 bytes allocated +==43055== +==43055== LEAK SUMMARY: +==43055== definitely lost: 0 bytes in 0 blocks +==43055== indirectly lost: 0 bytes in 0 blocks +==43055== possibly lost: 0 bytes in 0 blocks +==43055== still reachable: 24 bytes in 2 blocks +==43055== suppressed: 0 bytes in 0 blocks +==43055== Reachable blocks (those to which a pointer was found) are not shown. +==43055== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43055== +==43055== For lists of detected and suppressed errors, rerun with: -s +==43055== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-07_08-54-51/TestElectrodes_valgrind.txt b/log-files/2024-09-07_08-54-51/TestElectrodes_valgrind.txt new file mode 100644 index 000000000..4138fcc71 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestElectrodes_valgrind.txt @@ -0,0 +1,73 @@ +==43551== Memcheck, a memory error detector +==43551== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43551== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43551== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectrodes -malloc_debug -malloc_dump -memory_info +==43551== Parent PID: 23903 +==43551== +==43551== +==43551== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43551== Open file descriptor 12: +==43551== at 0xBD6007D: pipe (pipe.c:29) +==43551== by 0x1432407D: ??? +==43551== by 0xFADE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43551== by 0xB64E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43551== by 0xB5E7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43551== by 0xA2BBD38: PetscInitialize (pinit.c:924) +==43551== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43551== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43551== by 0x11B15C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43551== by 0x1167ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43551== by 0x118FC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43551== by 0x118E66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43551== by 0x1194FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43551== by 0x114C15: main (TestElectrodes.cpp:19) +==43551== +==43551== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43551== at 0xBD64A1C: __open_nocancel (open64_nocancel.c:39) +==43551== by 0xBCE8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43551== by 0xB54A822: ??? +==43551== by 0xB54A96F: ??? +==43551== by 0xFB836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43551== by 0xFB83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43551== by 0xFB39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43551== by 0xFADE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43551== by 0xB64E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43551== by 0xB5E7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43551== by 0xA2BBD38: PetscInitialize (pinit.c:924) +==43551== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43551== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43551== by 0x11B15C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43551== by 0x1167ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43551== by 0x118FC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43551== by 0x118E66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43551== by 0x1194FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43551== by 0x114C15: main (TestElectrodes.cpp:19) +==43551== +==43551== Open file descriptor 115: +==43551== +==43551== +==43551== Open file descriptor 112: +==43551== +==43551== +==43551== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectrodes_valgrind.txt +==43551== +==43551== +==43551== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43551== +==43551== +==43551== +==43551== HEAP SUMMARY: +==43551== in use at exit: 618,334 bytes in 8,238 blocks +==43551== total heap usage: 264,938 allocs, 256,700 frees, 1,364,214,348 bytes allocated +==43551== +==43551== LEAK SUMMARY: +==43551== definitely lost: 0 bytes in 0 blocks +==43551== indirectly lost: 0 bytes in 0 blocks +==43551== possibly lost: 0 bytes in 0 blocks +==43551== still reachable: 24 bytes in 2 blocks +==43551== suppressed: 618,310 bytes in 8,236 blocks +==43551== Reachable blocks (those to which a pointer was found) are not shown. +==43551== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43551== +==43551== For lists of detected and suppressed errors, rerun with: -s +==43551== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestElementAttributes_valgrind.txt b/log-files/2024-09-07_08-54-51/TestElementAttributes_valgrind.txt new file mode 100644 index 000000000..1b1e816a6 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestElementAttributes_valgrind.txt @@ -0,0 +1,73 @@ +==24318== Memcheck, a memory error detector +==24318== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24318== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24318== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestElementAttributes -malloc_debug -malloc_dump -memory_info +==24318== Parent PID: 23903 +==24318== +==24318== +==24318== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24318== Open file descriptor 12: +==24318== at 0x695107D: pipe (pipe.c:29) +==24318== by 0x100C307D: ??? +==24318== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24318== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24318== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24318== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24318== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24318== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24318== by 0x12CF3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24318== by 0x127D29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24318== by 0x12A996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24318== by 0x12A836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24318== by 0x12AECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24318== by 0x126145: main (TestElementAttributes.cpp:19) +==24318== +==24318== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24318== at 0x6955A1C: __open_nocancel (open64_nocancel.c:39) +==24318== by 0x68D9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24318== by 0x658F822: ??? +==24318== by 0x658F96F: ??? +==24318== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24318== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24318== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24318== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24318== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24318== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24318== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24318== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24318== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24318== by 0x12CF3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24318== by 0x127D29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24318== by 0x12A996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24318== by 0x12A836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24318== by 0x12AECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24318== by 0x126145: main (TestElementAttributes.cpp:19) +==24318== +==24318== Open file descriptor 115: +==24318== +==24318== +==24318== Open file descriptor 112: +==24318== +==24318== +==24318== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElementAttributes_valgrind.txt +==24318== +==24318== +==24318== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24318== +==24318== +==24318== +==24318== HEAP SUMMARY: +==24318== in use at exit: 618,222 bytes in 8,238 blocks +==24318== total heap usage: 47,471 allocs, 39,233 frees, 1,338,441,916 bytes allocated +==24318== +==24318== LEAK SUMMARY: +==24318== definitely lost: 0 bytes in 0 blocks +==24318== indirectly lost: 0 bytes in 0 blocks +==24318== possibly lost: 0 bytes in 0 blocks +==24318== still reachable: 24 bytes in 2 blocks +==24318== suppressed: 618,198 bytes in 8,236 blocks +==24318== Reachable blocks (those to which a pointer was found) are not shown. +==24318== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24318== +==24318== For lists of detected and suppressed errors, rerun with: -s +==24318== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestElement_valgrind.txt b/log-files/2024-09-07_08-54-51/TestElement_valgrind.txt new file mode 100644 index 000000000..4a7e9982e --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestElement_valgrind.txt @@ -0,0 +1,73 @@ +==24317== Memcheck, a memory error detector +==24317== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24317== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24317== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestElement -malloc_debug -malloc_dump -memory_info +==24317== Parent PID: 23903 +==24317== +==24317== +==24317== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24317== Open file descriptor 12: +==24317== at 0x6D3B07D: pipe (pipe.c:29) +==24317== by 0x100C507D: ??? +==24317== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24317== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24317== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24317== by 0x7017D38: PetscInitialize (pinit.c:924) +==24317== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24317== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24317== by 0x12B5A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24317== by 0x12642D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24317== by 0x12932C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24317== by 0x1291CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24317== by 0x129863: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24317== by 0x124855: main (TestElement.cpp:19) +==24317== +==24317== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24317== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24317== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24317== by 0x658F822: ??? +==24317== by 0x658F96F: ??? +==24317== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24317== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24317== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24317== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24317== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24317== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24317== by 0x7017D38: PetscInitialize (pinit.c:924) +==24317== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24317== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24317== by 0x12B5A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24317== by 0x12642D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24317== by 0x12932C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24317== by 0x1291CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24317== by 0x129863: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24317== by 0x124855: main (TestElement.cpp:19) +==24317== +==24317== Open file descriptor 115: +==24317== +==24317== +==24317== Open file descriptor 112: +==24317== +==24317== +==24317== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElement_valgrind.txt +==24317== +==24317== +==24317== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24317== +==24317== +==24317== +==24317== HEAP SUMMARY: +==24317== in use at exit: 618,222 bytes in 8,238 blocks +==24317== total heap usage: 65,853 allocs, 57,615 frees, 1,340,508,147 bytes allocated +==24317== +==24317== LEAK SUMMARY: +==24317== definitely lost: 0 bytes in 0 blocks +==24317== indirectly lost: 0 bytes in 0 blocks +==24317== possibly lost: 0 bytes in 0 blocks +==24317== still reachable: 24 bytes in 2 blocks +==24317== suppressed: 618,198 bytes in 8,236 blocks +==24317== Reachable blocks (those to which a pointer was found) are not shown. +==24317== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24317== +==24317== For lists of detected and suppressed errors, rerun with: -s +==24317== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestEllipticBoxDomainPdeModifier_valgrind.txt b/log-files/2024-09-07_08-54-51/TestEllipticBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..f361d0f19 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestEllipticBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25384== Memcheck, a memory error detector +==25384== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25384== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25384== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEllipticBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25384== Parent PID: 23903 +==25384== +==25384== +==25384== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25384== Open file descriptor 12: +==25384== at 0x1108F07D: pipe (pipe.c:29) +==25384== by 0x196AC07D: ??? +==25384== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25384== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25384== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25384== by 0xF627D38: PetscInitialize (pinit.c:924) +==25384== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25384== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25384== by 0x13AB97: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25384== by 0x135563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25384== by 0x138174: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25384== by 0x13806F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25384== by 0x138683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25384== by 0x133D65: main (TestEllipticBoxDomainPdeModifier.cpp:18) +==25384== +==25384== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25384== at 0x11093A1C: __open_nocancel (open64_nocancel.c:39) +==25384== by 0x11017BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25384== by 0xF4D3822: ??? +==25384== by 0xF4D396F: ??? +==25384== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25384== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25384== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25384== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25384== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25384== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25384== by 0xF627D38: PetscInitialize (pinit.c:924) +==25384== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25384== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25384== by 0x13AB97: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25384== by 0x135563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25384== by 0x138174: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25384== by 0x13806F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25384== by 0x138683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25384== by 0x133D65: main (TestEllipticBoxDomainPdeModifier.cpp:18) +==25384== +==25384== Open file descriptor 115: +==25384== +==25384== +==25384== Open file descriptor 112: +==25384== +==25384== +==25384== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEllipticBoxDomainPdeModifier_valgrind.txt +==25384== +==25384== +==25384== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25384== +==25384== +==25384== +==25384== HEAP SUMMARY: +==25384== in use at exit: 618,279 bytes in 8,235 blocks +==25384== total heap usage: 4,550,114 allocs, 4,541,879 frees, 1,904,493,279 bytes allocated +==25384== +==25384== LEAK SUMMARY: +==25384== definitely lost: 0 bytes in 0 blocks +==25384== indirectly lost: 0 bytes in 0 blocks +==25384== possibly lost: 0 bytes in 0 blocks +==25384== still reachable: 56 bytes in 3 blocks +==25384== suppressed: 618,223 bytes in 8,232 blocks +==25384== Reachable blocks (those to which a pointer was found) are not shown. +==25384== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25384== +==25384== For lists of detected and suppressed errors, rerun with: -s +==25384== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestEllipticGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-09-07_08-54-51/TestEllipticGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..823fad6dd --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestEllipticGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25392== Memcheck, a memory error detector +==25392== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25392== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25392== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEllipticGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25392== Parent PID: 23903 +==25392== +==25392== +==25392== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25392== Open file descriptor 12: +==25392== at 0x1117607D: pipe (pipe.c:29) +==25392== by 0x196AC07D: ??? +==25392== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25392== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25392== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25392== by 0xF627D38: PetscInitialize (pinit.c:924) +==25392== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25392== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25392== by 0x13FC51: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25392== by 0x139D3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25392== by 0x13CDD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25392== by 0x13CC74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25392== by 0x13D30B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25392== by 0x138165: main (TestEllipticGrowingDomainPdeModifier.cpp:19) +==25392== +==25392== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25392== at 0x1117AA1C: __open_nocancel (open64_nocancel.c:39) +==25392== by 0x110FEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25392== by 0xF4D3822: ??? +==25392== by 0xF4D396F: ??? +==25392== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25392== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25392== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25392== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25392== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25392== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25392== by 0xF627D38: PetscInitialize (pinit.c:924) +==25392== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25392== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25392== by 0x13FC51: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25392== by 0x139D3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25392== by 0x13CDD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25392== by 0x13CC74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25392== by 0x13D30B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25392== by 0x138165: main (TestEllipticGrowingDomainPdeModifier.cpp:19) +==25392== +==25392== Open file descriptor 115: +==25392== +==25392== +==25392== Open file descriptor 112: +==25392== +==25392== +==25392== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEllipticGrowingDomainPdeModifier_valgrind.txt +==25392== +==25392== +==25392== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25392== +==25392== +==25392== +==25392== HEAP SUMMARY: +==25392== in use at exit: 618,350 bytes in 8,239 blocks +==25392== total heap usage: 1,610,263 allocs, 1,602,024 frees, 1,438,380,833 bytes allocated +==25392== +==25392== LEAK SUMMARY: +==25392== definitely lost: 0 bytes in 0 blocks +==25392== indirectly lost: 0 bytes in 0 blocks +==25392== possibly lost: 0 bytes in 0 blocks +==25392== still reachable: 56 bytes in 3 blocks +==25392== suppressed: 618,294 bytes in 8,236 blocks +==25392== Reachable blocks (those to which a pointer was found) are not shown. +==25392== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25392== +==25392== For lists of detected and suppressed errors, rerun with: -s +==25392== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestException_valgrind.txt b/log-files/2024-09-07_08-54-51/TestException_valgrind.txt new file mode 100644 index 000000000..55ee3475b --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestException_valgrind.txt @@ -0,0 +1,73 @@ +==23966== Memcheck, a memory error detector +==23966== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23966== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23966== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestException -malloc_debug -malloc_dump -memory_info +==23966== Parent PID: 23903 +==23966== +==23966== +==23966== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23966== Open file descriptor 12: +==23966== at 0x4CB207D: pipe (pipe.c:29) +==23966== by 0xAEA507D: ??? +==23966== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23966== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23966== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23966== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23966== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23966== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23966== by 0x114E36: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23966== by 0x1105AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23966== by 0x112ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23966== by 0x112D78: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23966== by 0x11340F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23966== by 0x10E9D5: main (TestException.cpp:19) +==23966== +==23966== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23966== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==23966== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23966== by 0x4934822: ??? +==23966== by 0x493496F: ??? +==23966== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23966== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23966== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23966== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23966== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23966== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23966== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23966== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23966== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23966== by 0x114E36: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23966== by 0x1105AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23966== by 0x112ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23966== by 0x112D78: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23966== by 0x11340F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23966== by 0x10E9D5: main (TestException.cpp:19) +==23966== +==23966== Open file descriptor 115: +==23966== +==23966== +==23966== Open file descriptor 112: +==23966== +==23966== +==23966== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestException_valgrind.txt +==23966== +==23966== +==23966== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23966== +==23966== +==23966== +==23966== HEAP SUMMARY: +==23966== in use at exit: 617,838 bytes in 8,238 blocks +==23966== total heap usage: 45,181 allocs, 36,943 frees, 1,338,186,488 bytes allocated +==23966== +==23966== LEAK SUMMARY: +==23966== definitely lost: 0 bytes in 0 blocks +==23966== indirectly lost: 0 bytes in 0 blocks +==23966== possibly lost: 0 bytes in 0 blocks +==23966== still reachable: 24 bytes in 2 blocks +==23966== suppressed: 617,814 bytes in 8,236 blocks +==23966== Reachable blocks (those to which a pointer was found) are not shown. +==23966== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23966== +==23966== For lists of detected and suppressed errors, rerun with: -s +==23966== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestExecutableSupport_valgrind.txt b/log-files/2024-09-07_08-54-51/TestExecutableSupport_valgrind.txt new file mode 100644 index 000000000..a679777cb --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestExecutableSupport_valgrind.txt @@ -0,0 +1,79 @@ +==23967== Memcheck, a memory error detector +==23967== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23967== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23967== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestExecutableSupport -malloc_debug -malloc_dump -memory_info +==23967== Parent PID: 23903 +==23967== +==23967== +==23967== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23967== Open file descriptor 12: +==23967== at 0x4CB207D: pipe (pipe.c:29) +==23967== by 0xAEA507D: ??? +==23967== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23967== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23967== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23967== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23967== by 0x48D632C: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) +==23967== by 0x48D7EC0: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:455) +==23967== by 0x1120FD: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) +==23967== by 0x1124BC: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) +==23967== by 0x10D6CA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==23967== by 0x1103DA: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==23967== by 0x1102BF: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==23967== by 0x110165: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==23967== by 0x110027: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23967== by 0x11063B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23967== by 0x10C695: main (TestExecutableSupport.cpp:18) +==23967== +==23967== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23967== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==23967== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23967== by 0x4934822: ??? +==23967== by 0x493496F: ??? +==23967== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23967== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23967== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23967== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23967== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23967== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23967== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23967== by 0x48D632C: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) +==23967== by 0x48D7EC0: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:455) +==23967== by 0x1120FD: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) +==23967== by 0x1124BC: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) +==23967== by 0x10D6CA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==23967== by 0x1103DA: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==23967== by 0x1102BF: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==23967== by 0x110165: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==23967== by 0x110027: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23967== by 0x11063B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23967== by 0x10C695: main (TestExecutableSupport.cpp:18) +==23967== +==23967== Open file descriptor 115: +==23967== +==23967== +==23967== Open file descriptor 112: +==23967== +==23967== +==23967== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExecutableSupport_valgrind.txt +==23967== +==23967== +==23967== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23967== +==23967== +==23967== +==23967== HEAP SUMMARY: +==23967== in use at exit: 617,838 bytes in 8,238 blocks +==23967== total heap usage: 45,222 allocs, 36,984 frees, 1,338,262,370 bytes allocated +==23967== +==23967== LEAK SUMMARY: +==23967== definitely lost: 0 bytes in 0 blocks +==23967== indirectly lost: 0 bytes in 0 blocks +==23967== possibly lost: 0 bytes in 0 blocks +==23967== still reachable: 24 bytes in 2 blocks +==23967== suppressed: 617,814 bytes in 8,236 blocks +==23967== Reachable blocks (those to which a pointer was found) are not shown. +==23967== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23967== +==23967== For lists of detected and suppressed errors, rerun with: -s +==23967== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestExplicitCardiacMechanicsSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestExplicitCardiacMechanicsSolver_valgrind.txt new file mode 100644 index 000000000..8f38be2d6 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestExplicitCardiacMechanicsSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43083== Memcheck, a memory error detector +==43083== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43083== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43083== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExplicitCardiacMechanicsSolver -malloc_debug -malloc_dump -memory_info +==43083== Parent PID: 23903 +==43083== +==43083== +==43083== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43083== Open file descriptor 12: +==43083== at 0xAB1207D: pipe (pipe.c:29) +==43083== by 0x1432607D: ??? +==43083== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43083== by 0xC08B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43083== by 0xC024D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43083== by 0xAD1BD38: PetscInitialize (pinit.c:924) +==43083== by 0xA3121D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43083== by 0xA312227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43083== by 0x12399A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43083== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43083== by 0x1218A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43083== by 0x121746: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43083== by 0x121DDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43083== by 0x11D175: main (TestExplicitCardiacMechanicsSolver.cpp:19) +==43083== +==43083== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43083== at 0xAB16A1C: __open_nocancel (open64_nocancel.c:39) +==43083== by 0xAA9ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43083== by 0xA34C822: ??? +==43083== by 0xA34C96F: ??? +==43083== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43083== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43083== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43083== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43083== by 0xC08B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43083== by 0xC024D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43083== by 0xAD1BD38: PetscInitialize (pinit.c:924) +==43083== by 0xA3121D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43083== by 0xA312227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43083== by 0x12399A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43083== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43083== by 0x1218A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43083== by 0x121746: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43083== by 0x121DDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43083== by 0x11D175: main (TestExplicitCardiacMechanicsSolver.cpp:19) +==43083== +==43083== Open file descriptor 115: +==43083== +==43083== +==43083== Open file descriptor 112: +==43083== +==43083== +==43083== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExplicitCardiacMechanicsSolver_valgrind.txt +==43083== +==43083== +==43083== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43083== +==43083== +==43083== +==43083== HEAP SUMMARY: +==43083== in use at exit: 618,263 bytes in 8,234 blocks +==43083== total heap usage: 1,587,802 allocs, 1,579,568 frees, 1,535,126,781 bytes allocated +==43083== +==43083== LEAK SUMMARY: +==43083== definitely lost: 0 bytes in 0 blocks +==43083== indirectly lost: 0 bytes in 0 blocks +==43083== possibly lost: 0 bytes in 0 blocks +==43083== still reachable: 24 bytes in 2 blocks +==43083== suppressed: 618,239 bytes in 8,232 blocks +==43083== Reachable blocks (those to which a pointer was found) are not shown. +==43083== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43083== +==43083== For lists of detected and suppressed errors, rerun with: -s +==43083== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2024-09-07_08-54-51/TestExtendedBidomainProblem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestExtendedBidomainProblem_valgrind.txt new file mode 100644 index 000000000..9278ddd2a --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestExtendedBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41150== Memcheck, a memory error detector +==41150== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41150== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41150== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainProblem -malloc_debug -malloc_dump -memory_info +==41150== Parent PID: 23903 +==41150== +==41150== +==41150== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41150== Open file descriptor 12: +==41150== at 0xA98907D: pipe (pipe.c:29) +==41150== by 0x1432407D: ??? +==41150== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41150== by 0xA277418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41150== by 0xA210D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41150== by 0xAD14D38: PetscInitialize (pinit.c:924) +==41150== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41150== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41150== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41150== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41150== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41150== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41150== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41150== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) +==41150== +==41150== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41150== at 0xA98DA1C: __open_nocancel (open64_nocancel.c:39) +==41150== by 0xA911BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41150== by 0xA173822: ??? +==41150== by 0xA17396F: ??? +==41150== by 0xDA036DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41150== by 0xDA03938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41150== by 0xD9B9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41150== by 0xD95E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41150== by 0xA277418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41150== by 0xA210D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41150== by 0xAD14D38: PetscInitialize (pinit.c:924) +==41150== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41150== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41150== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41150== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41150== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41150== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41150== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41150== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) +==41150== +==41150== Open file descriptor 115: +==41150== +==41150== +==41150== Open file descriptor 112: +==41150== +==41150== +==41150== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainProblem_valgrind.txt +==41150== +==41150== +==41150== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41150== +==41150== +==41150== +==41150== HEAP SUMMARY: +==41150== in use at exit: 618,743 bytes in 8,244 blocks +==41150== total heap usage: 2,372,930 allocs, 2,364,686 frees, 2,468,286,172 bytes allocated +==41150== +==41150== LEAK SUMMARY: +==41150== definitely lost: 0 bytes in 0 blocks +==41150== indirectly lost: 0 bytes in 0 blocks +==41150== possibly lost: 0 bytes in 0 blocks +==41150== still reachable: 24 bytes in 2 blocks +==41150== suppressed: 618,719 bytes in 8,242 blocks +==41150== Reachable blocks (those to which a pointer was found) are not shown. +==41150== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41150== +==41150== For lists of detected and suppressed errors, rerun with: -s +==41150== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestExtendedBidomainTissue_valgrind.txt b/log-files/2024-09-07_08-54-51/TestExtendedBidomainTissue_valgrind.txt new file mode 100644 index 000000000..c082c5d64 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestExtendedBidomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==41142== Memcheck, a memory error detector +==41142== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41142== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41142== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainTissue -malloc_debug -malloc_dump -memory_info +==41142== Parent PID: 23903 +==41142== +==41142== +==41142== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41142== Open file descriptor 12: +==41142== at 0xBB9F07D: pipe (pipe.c:29) +==41142== by 0x1432407D: ??? +==41142== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41142== by 0xBF1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41142== by 0xBEB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41142== by 0xA254D38: PetscInitialize (pinit.c:924) +==41142== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41142== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41142== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41142== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41142== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41142== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41142== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41142== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) +==41142== +==41142== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41142== at 0xBBA3A1C: __open_nocancel (open64_nocancel.c:39) +==41142== by 0xBB27BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41142== by 0xA100822: ??? +==41142== by 0xA10096F: ??? +==41142== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41142== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41142== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41142== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41142== by 0xBF1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41142== by 0xBEB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41142== by 0xA254D38: PetscInitialize (pinit.c:924) +==41142== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41142== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41142== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41142== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41142== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41142== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41142== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41142== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) +==41142== +==41142== Open file descriptor 115: +==41142== +==41142== +==41142== Open file descriptor 112: +==41142== +==41142== +==41142== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainTissue_valgrind.txt +==41142== +==41142== +==41142== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41142== +==41142== +==41142== +==41142== HEAP SUMMARY: +==41142== in use at exit: 618,334 bytes in 8,238 blocks +==41142== total heap usage: 120,935 allocs, 112,697 frees, 1,354,349,789 bytes allocated +==41142== +==41142== LEAK SUMMARY: +==41142== definitely lost: 0 bytes in 0 blocks +==41142== indirectly lost: 0 bytes in 0 blocks +==41142== possibly lost: 0 bytes in 0 blocks +==41142== still reachable: 24 bytes in 2 blocks +==41142== suppressed: 618,310 bytes in 8,236 blocks +==41142== Reachable blocks (those to which a pointer was found) are not shown. +==41142== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41142== +==41142== For lists of detected and suppressed errors, rerun with: -s +==41142== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestExtendedVsBidomainProblem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestExtendedVsBidomainProblem_valgrind.txt new file mode 100644 index 000000000..22a5bf055 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestExtendedVsBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41134== Memcheck, a memory error detector +==41134== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41134== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41134== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedVsBidomainProblem -malloc_debug -malloc_dump -memory_info +==41134== Parent PID: 23903 +==41134== +==41134== +==41134== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41134== Open file descriptor 12: +==41134== at 0xABEF07D: pipe (pipe.c:29) +==41134== by 0x1432407D: ??? +==41134== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41134== by 0xC2EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41134== by 0xC283D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41134== by 0xAF7AD38: PetscInitialize (pinit.c:924) +==41134== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41134== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41134== by 0x12E254: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41134== by 0x128EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41134== by 0x12C1D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41134== by 0x12C076: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41134== by 0x12C70D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41134== by 0x1272D5: main (TestExtendedVsBidomainProblem.cpp:19) +==41134== +==41134== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41134== at 0xABF3A1C: __open_nocancel (open64_nocancel.c:39) +==41134== by 0xAB77BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41134== by 0xA510822: ??? +==41134== by 0xA51096F: ??? +==41134== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41134== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41134== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41134== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41134== by 0xC2EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41134== by 0xC283D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41134== by 0xAF7AD38: PetscInitialize (pinit.c:924) +==41134== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41134== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41134== by 0x12E254: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41134== by 0x128EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41134== by 0x12C1D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41134== by 0x12C076: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41134== by 0x12C70D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41134== by 0x1272D5: main (TestExtendedVsBidomainProblem.cpp:19) +==41134== +==41134== Open file descriptor 115: +==41134== +==41134== +==41134== Open file descriptor 112: +==41134== +==41134== +==41134== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedVsBidomainProblem_valgrind.txt +==41134== +==41134== +==41134== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41134== +==41134== +==41134== +==41134== HEAP SUMMARY: +==41134== in use at exit: 618,814 bytes in 8,248 blocks +==41134== total heap usage: 466,060 allocs, 457,812 frees, 1,446,178,212 bytes allocated +==41134== +==41134== LEAK SUMMARY: +==41134== definitely lost: 0 bytes in 0 blocks +==41134== indirectly lost: 0 bytes in 0 blocks +==41134== possibly lost: 0 bytes in 0 blocks +==41134== still reachable: 24 bytes in 2 blocks +==41134== suppressed: 618,790 bytes in 8,246 blocks +==41134== Reachable blocks (those to which a pointer was found) are not shown. +==41134== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41134== +==41134== For lists of detected and suppressed errors, rerun with: -s +==41134== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 61 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestExtrinsicPullModifier_valgrind.txt b/log-files/2024-09-07_08-54-51/TestExtrinsicPullModifier_valgrind.txt new file mode 100644 index 000000000..6aaf63bcc --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestExtrinsicPullModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26185== Memcheck, a memory error detector +==26185== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26185== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26185== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestExtrinsicPullModifier -malloc_debug -malloc_dump -memory_info +==26185== Parent PID: 23903 +==26185== +==26185== +==26185== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26185== Open file descriptor 12: +==26185== at 0xF83B07D: pipe (pipe.c:29) +==26185== by 0x196AD07D: ??? +==26185== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26185== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26185== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26185== by 0x10127D38: PetscInitialize (pinit.c:924) +==26185== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26185== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26185== by 0x1FC280: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26185== by 0x1F453F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26185== by 0x1F7DA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26185== by 0x1F7CA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26185== by 0x1F82B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26185== by 0x1F2D35: main (TestExtrinsicPullModifier.cpp:18) +==26185== +==26185== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26185== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==26185== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26185== by 0xF136822: ??? +==26185== by 0xF13696F: ??? +==26185== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26185== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26185== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26185== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26185== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26185== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26185== by 0x10127D38: PetscInitialize (pinit.c:924) +==26185== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26185== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26185== by 0x1FC280: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26185== by 0x1F453F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26185== by 0x1F7DA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26185== by 0x1F7CA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26185== by 0x1F82B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26185== by 0x1F2D35: main (TestExtrinsicPullModifier.cpp:18) +==26185== +==26185== Open file descriptor 115: +==26185== +==26185== +==26185== Open file descriptor 112: +==26185== +==26185== +==26185== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtrinsicPullModifier_valgrind.txt +==26185== +==26185== +==26185== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26185== +==26185== +==26185== +==26185== HEAP SUMMARY: +==26185== in use at exit: 618,350 bytes in 8,239 blocks +==26185== total heap usage: 223,370 allocs, 215,131 frees, 1,365,674,745 bytes allocated +==26185== +==26185== LEAK SUMMARY: +==26185== definitely lost: 0 bytes in 0 blocks +==26185== indirectly lost: 0 bytes in 0 blocks +==26185== possibly lost: 0 bytes in 0 blocks +==26185== still reachable: 56 bytes in 3 blocks +==26185== suppressed: 618,294 bytes in 8,236 blocks +==26185== Reachable blocks (those to which a pointer was found) are not shown. +==26185== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26185== +==26185== For lists of detected and suppressed errors, rerun with: -s +==26185== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestFemlabMeshReader_valgrind.txt b/log-files/2024-09-07_08-54-51/TestFemlabMeshReader_valgrind.txt new file mode 100644 index 000000000..378d1d5a5 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestFemlabMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24524== Memcheck, a memory error detector +==24524== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24524== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24524== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestFemlabMeshReader -malloc_debug -malloc_dump -memory_info +==24524== Parent PID: 23903 +==24524== +==24524== +==24524== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24524== Open file descriptor 12: +==24524== at 0x690F07D: pipe (pipe.c:29) +==24524== by 0x100C307D: ??? +==24524== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24524== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24524== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24524== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24524== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24524== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24524== by 0x116D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24524== by 0x11236D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24524== by 0x114DBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24524== by 0x114C5E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24524== by 0x1152F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24524== by 0x110795: main (TestFemlabMeshReader.cpp:19) +==24524== +==24524== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24524== at 0x6913A1C: __open_nocancel (open64_nocancel.c:39) +==24524== by 0x6897BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24524== by 0x658F822: ??? +==24524== by 0x658F96F: ??? +==24524== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24524== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24524== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24524== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24524== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24524== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24524== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24524== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24524== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24524== by 0x116D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24524== by 0x11236D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24524== by 0x114DBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24524== by 0x114C5E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24524== by 0x1152F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24524== by 0x110795: main (TestFemlabMeshReader.cpp:19) +==24524== +==24524== Open file descriptor 115: +==24524== +==24524== +==24524== Open file descriptor 112: +==24524== +==24524== +==24524== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFemlabMeshReader_valgrind.txt +==24524== +==24524== +==24524== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24524== +==24524== +==24524== +==24524== HEAP SUMMARY: +==24524== in use at exit: 618,222 bytes in 8,238 blocks +==24524== total heap usage: 68,511 allocs, 60,273 frees, 1,339,841,011 bytes allocated +==24524== +==24524== LEAK SUMMARY: +==24524== definitely lost: 0 bytes in 0 blocks +==24524== indirectly lost: 0 bytes in 0 blocks +==24524== possibly lost: 0 bytes in 0 blocks +==24524== still reachable: 24 bytes in 2 blocks +==24524== suppressed: 618,198 bytes in 8,236 blocks +==24524== Reachable blocks (those to which a pointer was found) are not shown. +==24524== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24524== +==24524== For lists of detected and suppressed errors, rerun with: -s +==24524== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt new file mode 100644 index 000000000..b43043ace --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41155== Memcheck, a memory error detector +==41155== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41155== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41155== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreReaderAbilityExtendedBidomainProblem -malloc_debug -malloc_dump -memory_info +==41155== Parent PID: 23903 +==41155== +==41155== +==41155== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41155== Open file descriptor 12: +==41155== at 0xA7DF07D: pipe (pipe.c:29) +==41155== by 0x1432407D: ??? +==41155== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41155== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41155== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41155== by 0xAB68D38: PetscInitialize (pinit.c:924) +==41155== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41155== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41155== by 0x128E4C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41155== by 0x123553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41155== by 0x126214: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41155== by 0x12610F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41155== by 0x126723: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41155== by 0x121D55: main (TestFibreReaderAbilityExtendedBidomainProblem.cpp:18) +==41155== +==41155== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41155== at 0xA7E3A1C: __open_nocancel (open64_nocancel.c:39) +==41155== by 0xA767BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41155== by 0xA100822: ??? +==41155== by 0xA10096F: ??? +==41155== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41155== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41155== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41155== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41155== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41155== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41155== by 0xAB68D38: PetscInitialize (pinit.c:924) +==41155== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41155== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41155== by 0x128E4C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41155== by 0x123553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41155== by 0x126214: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41155== by 0x12610F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41155== by 0x126723: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41155== by 0x121D55: main (TestFibreReaderAbilityExtendedBidomainProblem.cpp:18) +==41155== +==41155== Open file descriptor 115: +==41155== +==41155== +==41155== Open file descriptor 112: +==41155== +==41155== +==41155== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt +==41155== +==41155== +==41155== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41155== +==41155== +==41155== +==41155== HEAP SUMMARY: +==41155== in use at exit: 618,334 bytes in 8,238 blocks +==41155== total heap usage: 115,880 allocs, 107,642 frees, 1,342,959,819 bytes allocated +==41155== +==41155== LEAK SUMMARY: +==41155== definitely lost: 0 bytes in 0 blocks +==41155== indirectly lost: 0 bytes in 0 blocks +==41155== possibly lost: 0 bytes in 0 blocks +==41155== still reachable: 24 bytes in 2 blocks +==41155== suppressed: 618,310 bytes in 8,236 blocks +==41155== Reachable blocks (those to which a pointer was found) are not shown. +==41155== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41155== +==41155== For lists of detected and suppressed errors, rerun with: -s +==41155== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestFibreReader_valgrind.txt b/log-files/2024-09-07_08-54-51/TestFibreReader_valgrind.txt new file mode 100644 index 000000000..937e510e0 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestFibreReader_valgrind.txt @@ -0,0 +1,36 @@ +==41202== Memcheck, a memory error detector +==41202== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41202== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41202== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreReader -malloc_debug -malloc_dump -memory_info +==41202== Parent PID: 23903 +==41202== +==41202== +==41202== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41202== Open file descriptor 115: +==41202== +==41202== +==41202== Open file descriptor 112: +==41202== +==41202== +==41202== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreReader_valgrind.txt +==41202== +==41202== +==41202== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41202== +==41202== +==41202== +==41202== HEAP SUMMARY: +==41202== in use at exit: 24 bytes in 2 blocks +==41202== total heap usage: 9,356 allocs, 9,354 frees, 3,309,570 bytes allocated +==41202== +==41202== LEAK SUMMARY: +==41202== definitely lost: 0 bytes in 0 blocks +==41202== indirectly lost: 0 bytes in 0 blocks +==41202== possibly lost: 0 bytes in 0 blocks +==41202== still reachable: 24 bytes in 2 blocks +==41202== suppressed: 0 bytes in 0 blocks +==41202== Reachable blocks (those to which a pointer was found) are not shown. +==41202== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41202== +==41202== For lists of detected and suppressed errors, rerun with: -s +==41202== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-07_08-54-51/TestFibreWriter_valgrind.txt b/log-files/2024-09-07_08-54-51/TestFibreWriter_valgrind.txt new file mode 100644 index 000000000..348fabf56 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestFibreWriter_valgrind.txt @@ -0,0 +1,73 @@ +==41203== Memcheck, a memory error detector +==41203== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41203== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41203== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreWriter -malloc_debug -malloc_dump -memory_info +==41203== Parent PID: 23903 +==41203== +==41203== +==41203== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41203== Open file descriptor 12: +==41203== at 0x9A2107D: pipe (pipe.c:29) +==41203== by 0x1432607D: ??? +==41203== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41203== by 0x9656418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41203== by 0x95EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41203== by 0x82C3D38: PetscInitialize (pinit.c:924) +==41203== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41203== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41203== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41203== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41203== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41203== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41203== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41203== by 0x113DD5: main (TestFibreWriter.cpp:18) +==41203== +==41203== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41203== at 0x9A25A1C: __open_nocancel (open64_nocancel.c:39) +==41203== by 0x99A9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41203== by 0x9552822: ??? +==41203== by 0x955296F: ??? +==41203== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41203== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41203== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41203== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41203== by 0x9656418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41203== by 0x95EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41203== by 0x82C3D38: PetscInitialize (pinit.c:924) +==41203== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41203== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41203== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41203== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41203== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41203== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41203== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41203== by 0x113DD5: main (TestFibreWriter.cpp:18) +==41203== +==41203== Open file descriptor 115: +==41203== +==41203== +==41203== Open file descriptor 112: +==41203== +==41203== +==41203== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreWriter_valgrind.txt +==41203== +==41203== +==41203== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41203== +==41203== +==41203== +==41203== HEAP SUMMARY: +==41203== in use at exit: 618,334 bytes in 8,238 blocks +==41203== total heap usage: 57,350 allocs, 49,112 frees, 1,339,750,871 bytes allocated +==41203== +==41203== LEAK SUMMARY: +==41203== definitely lost: 0 bytes in 0 blocks +==41203== indirectly lost: 0 bytes in 0 blocks +==41203== possibly lost: 0 bytes in 0 blocks +==41203== still reachable: 24 bytes in 2 blocks +==41203== suppressed: 618,310 bytes in 8,236 blocks +==41203== Reachable blocks (those to which a pointer was found) are not shown. +==41203== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41203== +==41203== For lists of detected and suppressed errors, rerun with: -s +==41203== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestFileComparison_valgrind.txt b/log-files/2024-09-07_08-54-51/TestFileComparison_valgrind.txt new file mode 100644 index 000000000..e619e6c0a --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestFileComparison_valgrind.txt @@ -0,0 +1,73 @@ +==24002== Memcheck, a memory error detector +==24002== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24002== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24002== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFileComparison -malloc_debug -malloc_dump -memory_info +==24002== Parent PID: 23903 +==24002== +==24002== +==24002== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24002== Open file descriptor 12: +==24002== at 0x4CB207D: pipe (pipe.c:29) +==24002== by 0xAEA507D: ??? +==24002== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24002== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24002== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24002== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24002== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24002== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24002== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24002== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24002== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24002== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24002== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24002== by 0x110B35: main (TestFileComparison.cpp:18) +==24002== +==24002== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24002== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24002== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24002== by 0x4934822: ??? +==24002== by 0x493496F: ??? +==24002== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24002== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24002== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24002== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24002== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24002== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24002== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24002== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24002== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24002== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24002== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24002== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24002== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24002== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24002== by 0x110B35: main (TestFileComparison.cpp:18) +==24002== +==24002== Open file descriptor 115: +==24002== +==24002== +==24002== Open file descriptor 112: +==24002== +==24002== +==24002== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFileComparison_valgrind.txt +==24002== +==24002== +==24002== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24002== +==24002== +==24002== +==24002== HEAP SUMMARY: +==24002== in use at exit: 617,838 bytes in 8,238 blocks +==24002== total heap usage: 45,389 allocs, 37,151 frees, 1,338,617,682 bytes allocated +==24002== +==24002== LEAK SUMMARY: +==24002== definitely lost: 0 bytes in 0 blocks +==24002== indirectly lost: 0 bytes in 0 blocks +==24002== possibly lost: 0 bytes in 0 blocks +==24002== still reachable: 24 bytes in 2 blocks +==24002== suppressed: 617,814 bytes in 8,236 blocks +==24002== Reachable blocks (those to which a pointer was found) are not shown. +==24002== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24002== +==24002== For lists of detected and suppressed errors, rerun with: -s +==24002== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestFileFinder_valgrind.txt b/log-files/2024-09-07_08-54-51/TestFileFinder_valgrind.txt new file mode 100644 index 000000000..b49da52ef --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestFileFinder_valgrind.txt @@ -0,0 +1,73 @@ +==23995== Memcheck, a memory error detector +==23995== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23995== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23995== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFileFinder -malloc_debug -malloc_dump -memory_info +==23995== Parent PID: 23903 +==23995== +==23995== +==23995== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23995== Open file descriptor 12: +==23995== at 0x616907D: pipe (pipe.c:29) +==23995== by 0xAEA507D: ??? +==23995== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23995== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23995== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23995== by 0x4A23D38: PetscInitialize (pinit.c:924) +==23995== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23995== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23995== by 0x118727: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23995== by 0x113B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23995== by 0x1166DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23995== by 0x11657A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23995== by 0x116C11: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23995== by 0x111FB5: main (TestFileFinder.cpp:19) +==23995== +==23995== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23995== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==23995== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23995== by 0x5CB2822: ??? +==23995== by 0x5CB296F: ??? +==23995== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23995== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23995== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23995== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23995== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23995== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23995== by 0x4A23D38: PetscInitialize (pinit.c:924) +==23995== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23995== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23995== by 0x118727: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23995== by 0x113B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23995== by 0x1166DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23995== by 0x11657A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23995== by 0x116C11: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23995== by 0x111FB5: main (TestFileFinder.cpp:19) +==23995== +==23995== Open file descriptor 115: +==23995== +==23995== +==23995== Open file descriptor 112: +==23995== +==23995== +==23995== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFileFinder_valgrind.txt +==23995== +==23995== +==23995== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23995== +==23995== +==23995== +==23995== HEAP SUMMARY: +==23995== in use at exit: 617,838 bytes in 8,238 blocks +==23995== total heap usage: 48,389 allocs, 40,151 frees, 1,339,900,722 bytes allocated +==23995== +==23995== LEAK SUMMARY: +==23995== definitely lost: 0 bytes in 0 blocks +==23995== indirectly lost: 0 bytes in 0 blocks +==23995== possibly lost: 0 bytes in 0 blocks +==23995== still reachable: 24 bytes in 2 blocks +==23995== suppressed: 617,814 bytes in 8,236 blocks +==23995== Reachable blocks (those to which a pointer was found) are not shown. +==23995== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23995== +==23995== For lists of detected and suppressed errors, rerun with: -s +==23995== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestFineCoarseMeshPair_valgrind.txt b/log-files/2024-09-07_08-54-51/TestFineCoarseMeshPair_valgrind.txt new file mode 100644 index 000000000..0a2ab0eff --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestFineCoarseMeshPair_valgrind.txt @@ -0,0 +1,73 @@ +==25085== Memcheck, a memory error detector +==25085== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25085== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25085== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestFineCoarseMeshPair -malloc_debug -malloc_dump -memory_info +==25085== Parent PID: 23903 +==25085== +==25085== +==25085== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25085== Open file descriptor 12: +==25085== at 0x6FF107D: pipe (pipe.c:29) +==25085== by 0x104D507D: ??? +==25085== by 0xC36A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25085== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25085== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25085== by 0x7340D38: PetscInitialize (pinit.c:924) +==25085== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25085== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25085== by 0x1229DA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25085== by 0x11DBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25085== by 0x120762: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25085== by 0x120602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25085== by 0x120C99: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25085== by 0x11C015: main (TestFineCoarseMeshPair.cpp:19) +==25085== +==25085== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25085== at 0x6FF5A1C: __open_nocancel (open64_nocancel.c:39) +==25085== by 0x6F79BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25085== by 0x692E822: ??? +==25085== by 0x692E96F: ??? +==25085== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25085== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25085== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25085== by 0xC36A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25085== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25085== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25085== by 0x7340D38: PetscInitialize (pinit.c:924) +==25085== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25085== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25085== by 0x1229DA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25085== by 0x11DBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25085== by 0x120762: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25085== by 0x120602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25085== by 0x120C99: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25085== by 0x11C015: main (TestFineCoarseMeshPair.cpp:19) +==25085== +==25085== Open file descriptor 115: +==25085== +==25085== +==25085== Open file descriptor 112: +==25085== +==25085== +==25085== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFineCoarseMeshPair_valgrind.txt +==25085== +==25085== +==25085== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25085== +==25085== +==25085== +==25085== HEAP SUMMARY: +==25085== in use at exit: 618,254 bytes in 8,238 blocks +==25085== total heap usage: 1,511,420 allocs, 1,503,182 frees, 1,478,950,084 bytes allocated +==25085== +==25085== LEAK SUMMARY: +==25085== definitely lost: 0 bytes in 0 blocks +==25085== indirectly lost: 0 bytes in 0 blocks +==25085== possibly lost: 0 bytes in 0 blocks +==25085== still reachable: 24 bytes in 2 blocks +==25085== suppressed: 618,230 bytes in 8,236 blocks +==25085== Reachable blocks (those to which a pointer was found) are not shown. +==25085== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25085== +==25085== For lists of detected and suppressed errors, rerun with: -s +==25085== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestFloatingPointDivisionByZeroPetsc_valgrind.txt b/log-files/2024-09-07_08-54-51/TestFloatingPointDivisionByZeroPetsc_valgrind.txt new file mode 100644 index 000000000..6b5c3112b --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestFloatingPointDivisionByZeroPetsc_valgrind.txt @@ -0,0 +1,73 @@ +==24004== Memcheck, a memory error detector +==24004== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24004== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24004== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFloatingPointDivisionByZeroPetsc -malloc_debug -malloc_dump -memory_info +==24004== Parent PID: 23903 +==24004== +==24004== +==24004== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24004== Open file descriptor 12: +==24004== at 0x4CB207D: pipe (pipe.c:29) +==24004== by 0xAEA507D: ??? +==24004== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24004== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24004== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24004== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24004== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24004== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24004== by 0x1123B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24004== by 0x10DFCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24004== by 0x110452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24004== by 0x1102F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24004== by 0x110989: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24004== by 0x10C3F5: main (TestFloatingPointDivisionByZeroPetsc.cpp:19) +==24004== +==24004== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24004== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24004== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24004== by 0x4934822: ??? +==24004== by 0x493496F: ??? +==24004== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24004== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24004== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24004== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24004== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24004== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24004== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24004== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24004== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24004== by 0x1123B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24004== by 0x10DFCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24004== by 0x110452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24004== by 0x1102F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24004== by 0x110989: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24004== by 0x10C3F5: main (TestFloatingPointDivisionByZeroPetsc.cpp:19) +==24004== +==24004== Open file descriptor 115: +==24004== +==24004== +==24004== Open file descriptor 112: +==24004== +==24004== +==24004== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFloatingPointDivisionByZeroPetsc_valgrind.txt +==24004== +==24004== +==24004== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24004== +==24004== +==24004== +==24004== HEAP SUMMARY: +==24004== in use at exit: 617,838 bytes in 8,238 blocks +==24004== total heap usage: 44,909 allocs, 36,671 frees, 1,338,159,590 bytes allocated +==24004== +==24004== LEAK SUMMARY: +==24004== definitely lost: 0 bytes in 0 blocks +==24004== indirectly lost: 0 bytes in 0 blocks +==24004== possibly lost: 0 bytes in 0 blocks +==24004== still reachable: 24 bytes in 2 blocks +==24004== suppressed: 617,814 bytes in 8,236 blocks +==24004== Reachable blocks (those to which a pointer was found) are not shown. +==24004== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24004== +==24004== For lists of detected and suppressed errors, rerun with: -s +==24004== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestFloatingPointDivisionByZero_valgrind.txt b/log-files/2024-09-07_08-54-51/TestFloatingPointDivisionByZero_valgrind.txt new file mode 100644 index 000000000..7bfc7d1ab --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestFloatingPointDivisionByZero_valgrind.txt @@ -0,0 +1,73 @@ +==24003== Memcheck, a memory error detector +==24003== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24003== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24003== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFloatingPointDivisionByZero -malloc_debug -malloc_dump -memory_info +==24003== Parent PID: 23903 +==24003== +==24003== +==24003== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24003== Open file descriptor 12: +==24003== at 0x616907D: pipe (pipe.c:29) +==24003== by 0xAEA507D: ??? +==24003== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24003== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24003== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24003== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24003== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24003== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24003== by 0x11245F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24003== by 0x10E06D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24003== by 0x1104F2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24003== by 0x110392: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24003== by 0x110A29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24003== by 0x10C495: main (TestFloatingPointDivisionByZero.cpp:19) +==24003== +==24003== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24003== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24003== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24003== by 0x5CB2822: ??? +==24003== by 0x5CB296F: ??? +==24003== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24003== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24003== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24003== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24003== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24003== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24003== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24003== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24003== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24003== by 0x11245F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24003== by 0x10E06D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24003== by 0x1104F2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24003== by 0x110392: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24003== by 0x110A29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24003== by 0x10C495: main (TestFloatingPointDivisionByZero.cpp:19) +==24003== +==24003== Open file descriptor 115: +==24003== +==24003== +==24003== Open file descriptor 112: +==24003== +==24003== +==24003== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFloatingPointDivisionByZero_valgrind.txt +==24003== +==24003== +==24003== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24003== +==24003== +==24003== +==24003== HEAP SUMMARY: +==24003== in use at exit: 617,838 bytes in 8,238 blocks +==24003== total heap usage: 44,909 allocs, 36,671 frees, 1,338,159,418 bytes allocated +==24003== +==24003== LEAK SUMMARY: +==24003== definitely lost: 0 bytes in 0 blocks +==24003== indirectly lost: 0 bytes in 0 blocks +==24003== possibly lost: 0 bytes in 0 blocks +==24003== still reachable: 24 bytes in 2 blocks +==24003== suppressed: 617,814 bytes in 8,236 blocks +==24003== Reachable blocks (those to which a pointer was found) are not shown. +==24003== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24003== +==24003== For lists of detected and suppressed errors, rerun with: -s +==24003== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestFluidSource_valgrind.txt b/log-files/2024-09-07_08-54-51/TestFluidSource_valgrind.txt new file mode 100644 index 000000000..1115f34e3 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestFluidSource_valgrind.txt @@ -0,0 +1,73 @@ +==24729== Memcheck, a memory error detector +==24729== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24729== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24729== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestFluidSource -malloc_debug -malloc_dump -memory_info +==24729== Parent PID: 23903 +==24729== +==24729== +==24729== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24729== Open file descriptor 12: +==24729== at 0x7DC407D: pipe (pipe.c:29) +==24729== by 0x100C307D: ??? +==24729== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24729== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24729== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24729== by 0x667ED38: PetscInitialize (pinit.c:924) +==24729== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24729== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24729== by 0x11576F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24729== by 0x110FF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24729== by 0x113510: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24729== by 0x11340B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24729== by 0x113A1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24729== by 0x10F7F5: main (TestFluidSource.cpp:18) +==24729== +==24729== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24729== at 0x7DC8A1C: __open_nocancel (open64_nocancel.c:39) +==24729== by 0x7D4CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24729== by 0x790D822: ??? +==24729== by 0x790D96F: ??? +==24729== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24729== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24729== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24729== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24729== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24729== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24729== by 0x667ED38: PetscInitialize (pinit.c:924) +==24729== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24729== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24729== by 0x11576F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24729== by 0x110FF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24729== by 0x113510: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24729== by 0x11340B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24729== by 0x113A1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24729== by 0x10F7F5: main (TestFluidSource.cpp:18) +==24729== +==24729== Open file descriptor 115: +==24729== +==24729== +==24729== Open file descriptor 112: +==24729== +==24729== +==24729== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFluidSource_valgrind.txt +==24729== +==24729== +==24729== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24729== +==24729== +==24729== +==24729== HEAP SUMMARY: +==24729== in use at exit: 618,222 bytes in 8,238 blocks +==24729== total heap usage: 47,307 allocs, 39,069 frees, 1,338,381,783 bytes allocated +==24729== +==24729== LEAK SUMMARY: +==24729== definitely lost: 0 bytes in 0 blocks +==24729== indirectly lost: 0 bytes in 0 blocks +==24729== possibly lost: 0 bytes in 0 blocks +==24729== still reachable: 24 bytes in 2 blocks +==24729== suppressed: 618,198 bytes in 8,236 blocks +==24729== Reachable blocks (those to which a pointer was found) are not shown. +==24729== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24729== +==24729== For lists of detected and suppressed errors, rerun with: -s +==24729== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestForces_valgrind.txt b/log-files/2024-09-07_08-54-51/TestForces_valgrind.txt new file mode 100644 index 000000000..a5807f06d --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestForces_valgrind.txt @@ -0,0 +1,73 @@ +==25887== Memcheck, a memory error detector +==25887== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25887== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25887== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestForces -malloc_debug -malloc_dump -memory_info +==25887== Parent PID: 23903 +==25887== +==25887== +==25887== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25887== Open file descriptor 12: +==25887== at 0xF92407D: pipe (pipe.c:29) +==25887== by 0x196AD07D: ??? +==25887== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25887== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25887== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25887== by 0x10210D38: PetscInitialize (pinit.c:924) +==25887== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25887== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25887== by 0x14FA72: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25887== by 0x147FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25887== by 0x14B1C0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25887== by 0x14B060: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25887== by 0x14B6F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25887== by 0x1463E5: main (TestForces.cpp:19) +==25887== +==25887== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25887== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==25887== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25887== by 0xF136822: ??? +==25887== by 0xF13696F: ??? +==25887== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25887== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25887== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25887== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25887== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25887== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25887== by 0x10210D38: PetscInitialize (pinit.c:924) +==25887== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25887== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25887== by 0x14FA72: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25887== by 0x147FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25887== by 0x14B1C0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25887== by 0x14B060: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25887== by 0x14B6F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25887== by 0x1463E5: main (TestForces.cpp:19) +==25887== +==25887== Open file descriptor 115: +==25887== +==25887== +==25887== Open file descriptor 112: +==25887== +==25887== +==25887== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestForces_valgrind.txt +==25887== +==25887== +==25887== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25887== +==25887== +==25887== +==25887== HEAP SUMMARY: +==25887== in use at exit: 618,350 bytes in 8,239 blocks +==25887== total heap usage: 100,086 allocs, 91,847 frees, 1,344,048,877 bytes allocated +==25887== +==25887== LEAK SUMMARY: +==25887== definitely lost: 0 bytes in 0 blocks +==25887== indirectly lost: 0 bytes in 0 blocks +==25887== possibly lost: 0 bytes in 0 blocks +==25887== still reachable: 56 bytes in 3 blocks +==25887== suppressed: 618,294 bytes in 8,236 blocks +==25887== Reachable blocks (those to which a pointer was found) are not shown. +==25887== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25887== +==25887== For lists of detected and suppressed errors, rerun with: -s +==25887== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestFourthOrderTensor_valgrind.txt b/log-files/2024-09-07_08-54-51/TestFourthOrderTensor_valgrind.txt new file mode 100644 index 000000000..bb8c46dde --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestFourthOrderTensor_valgrind.txt @@ -0,0 +1,73 @@ +==24209== Memcheck, a memory error detector +==24209== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24209== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24209== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestFourthOrderTensor -malloc_debug -malloc_dump -memory_info +==24209== Parent PID: 23903 +==24209== +==24209== +==24209== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24209== Open file descriptor 12: +==24209== at 0x4CB407D: pipe (pipe.c:29) +==24209== by 0xAEA507D: ??? +==24209== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24209== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24209== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24209== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24209== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24209== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24209== by 0x114306: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24209== by 0x10FD33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24209== by 0x1122B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24209== by 0x1121AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24209== by 0x1127BF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24209== by 0x10E535: main (TestFourthOrderTensor.cpp:18) +==24209== +==24209== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24209== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==24209== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24209== by 0x4934822: ??? +==24209== by 0x493496F: ??? +==24209== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24209== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24209== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24209== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24209== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24209== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24209== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24209== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24209== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24209== by 0x114306: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24209== by 0x10FD33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24209== by 0x1122B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24209== by 0x1121AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24209== by 0x1127BF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24209== by 0x10E535: main (TestFourthOrderTensor.cpp:18) +==24209== +==24209== Open file descriptor 115: +==24209== +==24209== +==24209== Open file descriptor 112: +==24209== +==24209== +==24209== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFourthOrderTensor_valgrind.txt +==24209== +==24209== +==24209== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24209== +==24209== +==24209== +==24209== HEAP SUMMARY: +==24209== in use at exit: 617,838 bytes in 8,238 blocks +==24209== total heap usage: 44,931 allocs, 36,693 frees, 1,338,166,557 bytes allocated +==24209== +==24209== LEAK SUMMARY: +==24209== definitely lost: 0 bytes in 0 blocks +==24209== indirectly lost: 0 bytes in 0 blocks +==24209== possibly lost: 0 bytes in 0 blocks +==24209== still reachable: 24 bytes in 2 blocks +==24209== suppressed: 617,814 bytes in 8,236 blocks +==24209== Reachable blocks (those to which a pointer was found) are not shown. +==24209== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24209== +==24209== For lists of detected and suppressed errors, rerun with: -s +==24209== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestGIModifiedModels_valgrind.txt b/log-files/2024-09-07_08-54-51/TestGIModifiedModels_valgrind.txt new file mode 100644 index 000000000..addcf5a26 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestGIModifiedModels_valgrind.txt @@ -0,0 +1,73 @@ +==41166== Memcheck, a memory error detector +==41166== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41166== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41166== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestGIModifiedModels -malloc_debug -malloc_dump -memory_info +==41166== Parent PID: 23903 +==41166== +==41166== +==41166== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41166== Open file descriptor 12: +==41166== at 0x886507D: pipe (pipe.c:29) +==41166== by 0x1432407D: ??? +==41166== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41166== by 0x9F5E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41166== by 0x9EF7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41166== by 0x8BEED38: PetscInitialize (pinit.c:924) +==41166== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41166== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41166== by 0x12C2F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41166== by 0x126ECB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41166== by 0x129968: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41166== by 0x129808: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41166== by 0x129E9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41166== by 0x122165: main (TestGIModifiedModels.cpp:19) +==41166== +==41166== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41166== at 0x8869A1C: __open_nocancel (open64_nocancel.c:39) +==41166== by 0x87EDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41166== by 0x8489822: ??? +==41166== by 0x848996F: ??? +==41166== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41166== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41166== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41166== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41166== by 0x9F5E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41166== by 0x9EF7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41166== by 0x8BEED38: PetscInitialize (pinit.c:924) +==41166== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41166== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41166== by 0x12C2F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41166== by 0x126ECB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41166== by 0x129968: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41166== by 0x129808: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41166== by 0x129E9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41166== by 0x122165: main (TestGIModifiedModels.cpp:19) +==41166== +==41166== Open file descriptor 115: +==41166== +==41166== +==41166== Open file descriptor 112: +==41166== +==41166== +==41166== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGIModifiedModels_valgrind.txt +==41166== +==41166== +==41166== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41166== +==41166== +==41166== +==41166== HEAP SUMMARY: +==41166== in use at exit: 618,263 bytes in 8,234 blocks +==41166== total heap usage: 1,453,372 allocs, 1,445,138 frees, 1,614,518,060 bytes allocated +==41166== +==41166== LEAK SUMMARY: +==41166== definitely lost: 0 bytes in 0 blocks +==41166== indirectly lost: 0 bytes in 0 blocks +==41166== possibly lost: 0 bytes in 0 blocks +==41166== still reachable: 24 bytes in 2 blocks +==41166== suppressed: 618,239 bytes in 8,232 blocks +==41166== Reachable blocks (those to which a pointer was found) are not shown. +==41166== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41166== +==41166== For lists of detected and suppressed errors, rerun with: -s +==41166== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestGRL1IvpOdeSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestGRL1IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..5f7eb97bf --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestGRL1IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24868== Memcheck, a memory error detector +==24868== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24868== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24868== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestGRL1IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24868== Parent PID: 23903 +==24868== +==24868== +==24868== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24868== Open file descriptor 12: +==24868== at 0x503907D: pipe (pipe.c:29) +==24868== by 0xB1E607D: ??? +==24868== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24868== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24868== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24868== by 0x5308D38: PetscInitialize (pinit.c:924) +==24868== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24868== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24868== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24868== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24868== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24868== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24868== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24868== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) +==24868== +==24868== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24868== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24868== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24868== by 0x4B76822: ??? +==24868== by 0x4B7696F: ??? +==24868== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24868== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24868== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24868== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24868== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24868== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24868== by 0x5308D38: PetscInitialize (pinit.c:924) +==24868== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24868== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24868== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24868== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24868== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24868== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24868== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24868== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) +==24868== +==24868== Open file descriptor 115: +==24868== +==24868== +==24868== Open file descriptor 112: +==24868== +==24868== +==24868== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGRL1IvpOdeSolver_valgrind.txt +==24868== +==24868== +==24868== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24868== +==24868== +==24868== +==24868== HEAP SUMMARY: +==24868== in use at exit: 617,902 bytes in 8,238 blocks +==24868== total heap usage: 50,998 allocs, 42,760 frees, 1,338,665,642 bytes allocated +==24868== +==24868== LEAK SUMMARY: +==24868== definitely lost: 0 bytes in 0 blocks +==24868== indirectly lost: 0 bytes in 0 blocks +==24868== possibly lost: 0 bytes in 0 blocks +==24868== still reachable: 24 bytes in 2 blocks +==24868== suppressed: 617,878 bytes in 8,236 blocks +==24868== Reachable blocks (those to which a pointer was found) are not shown. +==24868== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24868== +==24868== For lists of detected and suppressed errors, rerun with: -s +==24868== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestGRL2IvpOdeSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestGRL2IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..9dc01dfa1 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestGRL2IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24869== Memcheck, a memory error detector +==24869== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24869== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24869== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestGRL2IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24869== Parent PID: 23903 +==24869== +==24869== +==24869== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24869== Open file descriptor 12: +==24869== at 0x503907D: pipe (pipe.c:29) +==24869== by 0xB1E607D: ??? +==24869== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24869== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24869== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24869== by 0x5308D38: PetscInitialize (pinit.c:924) +==24869== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24869== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24869== by 0x127082: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24869== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24869== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24869== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24869== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24869== by 0x11EEA5: main (TestGRL2IvpOdeSolver.cpp:19) +==24869== +==24869== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24869== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24869== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24869== by 0x4B76822: ??? +==24869== by 0x4B7696F: ??? +==24869== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24869== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24869== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24869== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24869== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24869== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24869== by 0x5308D38: PetscInitialize (pinit.c:924) +==24869== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24869== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24869== by 0x127082: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24869== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24869== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24869== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24869== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24869== by 0x11EEA5: main (TestGRL2IvpOdeSolver.cpp:19) +==24869== +==24869== Open file descriptor 115: +==24869== +==24869== +==24869== Open file descriptor 112: +==24869== +==24869== +==24869== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGRL2IvpOdeSolver_valgrind.txt +==24869== +==24869== +==24869== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24869== +==24869== +==24869== +==24869== HEAP SUMMARY: +==24869== in use at exit: 617,902 bytes in 8,238 blocks +==24869== total heap usage: 51,372 allocs, 43,134 frees, 1,338,713,950 bytes allocated +==24869== +==24869== LEAK SUMMARY: +==24869== definitely lost: 0 bytes in 0 blocks +==24869== indirectly lost: 0 bytes in 0 blocks +==24869== possibly lost: 0 bytes in 0 blocks +==24869== still reachable: 24 bytes in 2 blocks +==24869== suppressed: 617,878 bytes in 8,236 blocks +==24869== Reachable blocks (those to which a pointer was found) are not shown. +==24869== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24869== +==24869== For lists of detected and suppressed errors, rerun with: -s +==24869== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestGaussianQuadratureRule_valgrind.txt b/log-files/2024-09-07_08-54-51/TestGaussianQuadratureRule_valgrind.txt new file mode 100644 index 000000000..e58fff26d --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestGaussianQuadratureRule_valgrind.txt @@ -0,0 +1,73 @@ +==25098== Memcheck, a memory error detector +==25098== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25098== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25098== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestGaussianQuadratureRule -malloc_debug -malloc_dump -memory_info +==25098== Parent PID: 23903 +==25098== +==25098== +==25098== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25098== Open file descriptor 12: +==25098== at 0x6D9307D: pipe (pipe.c:29) +==25098== by 0x104D507D: ??? +==25098== by 0xC31D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25098== by 0x8807418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25098== by 0x87A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25098== by 0x70E2D38: PetscInitialize (pinit.c:924) +==25098== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25098== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25098== by 0x11A084: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25098== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25098== by 0x1180E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25098== by 0x117F82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25098== by 0x118619: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25098== by 0x113AB5: main (TestGaussianQuadratureRule.cpp:19) +==25098== +==25098== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25098== at 0x6D97A1C: __open_nocancel (open64_nocancel.c:39) +==25098== by 0x6D1BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25098== by 0x692E822: ??? +==25098== by 0x692E96F: ??? +==25098== by 0xC3C26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25098== by 0xC3C2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25098== by 0xC378922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25098== by 0xC31D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25098== by 0x8807418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25098== by 0x87A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25098== by 0x70E2D38: PetscInitialize (pinit.c:924) +==25098== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25098== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25098== by 0x11A084: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25098== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25098== by 0x1180E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25098== by 0x117F82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25098== by 0x118619: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25098== by 0x113AB5: main (TestGaussianQuadratureRule.cpp:19) +==25098== +==25098== Open file descriptor 115: +==25098== +==25098== +==25098== Open file descriptor 112: +==25098== +==25098== +==25098== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGaussianQuadratureRule_valgrind.txt +==25098== +==25098== +==25098== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25098== +==25098== +==25098== +==25098== HEAP SUMMARY: +==25098== in use at exit: 618,254 bytes in 8,238 blocks +==25098== total heap usage: 47,633 allocs, 39,395 frees, 1,338,403,128 bytes allocated +==25098== +==25098== LEAK SUMMARY: +==25098== definitely lost: 0 bytes in 0 blocks +==25098== indirectly lost: 0 bytes in 0 blocks +==25098== possibly lost: 0 bytes in 0 blocks +==25098== still reachable: 24 bytes in 2 blocks +==25098== suppressed: 618,230 bytes in 8,236 blocks +==25098== Reachable blocks (those to which a pointer was found) are not shown. +==25098== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25098== +==25098== For lists of detected and suppressed errors, rerun with: -s +==25098== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestGeneralizedRushLarsen_valgrind.txt b/log-files/2024-09-07_08-54-51/TestGeneralizedRushLarsen_valgrind.txt new file mode 100644 index 000000000..e92941e66 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestGeneralizedRushLarsen_valgrind.txt @@ -0,0 +1,73 @@ +==41540== Memcheck, a memory error detector +==41540== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41540== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41540== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestGeneralizedRushLarsen -malloc_debug -malloc_dump -memory_info +==41540== Parent PID: 23903 +==41540== +==41540== +==41540== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41540== Open file descriptor 12: +==41540== at 0x87AE07D: pipe (pipe.c:29) +==41540== by 0x1432407D: ??? +==41540== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41540== by 0x9EA9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41540== by 0x9E42D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41540== by 0x8B39D38: PetscInitialize (pinit.c:924) +==41540== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41540== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41540== by 0x11C6A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41540== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41540== by 0x11A2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41540== by 0x11A14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41540== by 0x11A7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41540== by 0x115CD5: main (TestGeneralizedRushLarsen.cpp:19) +==41540== +==41540== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41540== at 0x87B2A1C: __open_nocancel (open64_nocancel.c:39) +==41540== by 0x8736BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41540== by 0x8416822: ??? +==41540== by 0x841696F: ??? +==41540== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41540== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41540== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41540== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41540== by 0x9EA9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41540== by 0x9E42D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41540== by 0x8B39D38: PetscInitialize (pinit.c:924) +==41540== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41540== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41540== by 0x11C6A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41540== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41540== by 0x11A2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41540== by 0x11A14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41540== by 0x11A7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41540== by 0x115CD5: main (TestGeneralizedRushLarsen.cpp:19) +==41540== +==41540== Open file descriptor 115: +==41540== +==41540== +==41540== Open file descriptor 112: +==41540== +==41540== +==41540== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGeneralizedRushLarsen_valgrind.txt +==41540== +==41540== +==41540== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41540== +==41540== +==41540== +==41540== HEAP SUMMARY: +==41540== in use at exit: 621,868 bytes in 8,242 blocks +==41540== total heap usage: 3,054,222 allocs, 3,045,980 frees, 1,612,720,676 bytes allocated +==41540== +==41540== LEAK SUMMARY: +==41540== definitely lost: 0 bytes in 0 blocks +==41540== indirectly lost: 0 bytes in 0 blocks +==41540== possibly lost: 0 bytes in 0 blocks +==41540== still reachable: 3,629 bytes in 10 blocks +==41540== suppressed: 618,239 bytes in 8,232 blocks +==41540== Reachable blocks (those to which a pointer was found) are not shown. +==41540== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41540== +==41540== For lists of detected and suppressed errors, rerun with: -s +==41540== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestGenericEventHandler_valgrind.txt b/log-files/2024-09-07_08-54-51/TestGenericEventHandler_valgrind.txt new file mode 100644 index 000000000..7e82a3fe2 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestGenericEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24029== Memcheck, a memory error detector +==24029== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24029== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24029== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestGenericEventHandler -malloc_debug -malloc_dump -memory_info +==24029== Parent PID: 23903 +==24029== +==24029== +==24029== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24029== Open file descriptor 12: +==24029== at 0x4DEB07D: pipe (pipe.c:29) +==24029== by 0xAEA307D: ??? +==24029== by 0x643A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24029== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24029== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24029== by 0x5036D38: PetscInitialize (pinit.c:924) +==24029== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24029== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24029== by 0x1166EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24029== by 0x11164D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24029== by 0x11478C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24029== by 0x11462C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24029== by 0x114CC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24029== by 0x10FA75: main (TestGenericEventHandler.cpp:19) +==24029== +==24029== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24029== at 0x4DEFA1C: __open_nocancel (open64_nocancel.c:39) +==24029== by 0x4D73BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24029== by 0x4934822: ??? +==24029== by 0x493496F: ??? +==24029== by 0x64E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24029== by 0x64E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24029== by 0x6497922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24029== by 0x643A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24029== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24029== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24029== by 0x5036D38: PetscInitialize (pinit.c:924) +==24029== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24029== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24029== by 0x1166EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24029== by 0x11164D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24029== by 0x11478C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24029== by 0x11462C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24029== by 0x114CC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24029== by 0x10FA75: main (TestGenericEventHandler.cpp:19) +==24029== +==24029== Open file descriptor 115: +==24029== +==24029== +==24029== Open file descriptor 112: +==24029== +==24029== +==24029== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGenericEventHandler_valgrind.txt +==24029== +==24029== +==24029== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24029== +==24029== +==24029== +==24029== HEAP SUMMARY: +==24029== in use at exit: 617,838 bytes in 8,238 blocks +==24029== total heap usage: 44,986 allocs, 36,748 frees, 1,338,169,062 bytes allocated +==24029== +==24029== LEAK SUMMARY: +==24029== definitely lost: 0 bytes in 0 blocks +==24029== indirectly lost: 0 bytes in 0 blocks +==24029== possibly lost: 0 bytes in 0 blocks +==24029== still reachable: 24 bytes in 2 blocks +==24029== suppressed: 617,814 bytes in 8,236 blocks +==24029== Reachable blocks (those to which a pointer was found) are not shown. +==24029== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24029== +==24029== For lists of detected and suppressed errors, rerun with: -s +==24029== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestGmshMeshReader_valgrind.txt b/log-files/2024-09-07_08-54-51/TestGmshMeshReader_valgrind.txt new file mode 100644 index 000000000..e0d661226 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestGmshMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24529== Memcheck, a memory error detector +==24529== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24529== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24529== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestGmshMeshReader -malloc_debug -malloc_dump -memory_info +==24529== Parent PID: 23903 +==24529== +==24529== +==24529== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24529== Open file descriptor 12: +==24529== at 0x6D3B07D: pipe (pipe.c:29) +==24529== by 0x100C507D: ??? +==24529== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24529== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24529== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24529== by 0x7017D38: PetscInitialize (pinit.c:924) +==24529== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24529== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24529== by 0x1235DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24529== by 0x11EA0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24529== by 0x12152A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24529== by 0x1213CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24529== by 0x121A61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24529== by 0x11CE35: main (TestGmshMeshReader.cpp:19) +==24529== +==24529== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24529== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24529== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24529== by 0x658F822: ??? +==24529== by 0x658F96F: ??? +==24529== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24529== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24529== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24529== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24529== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24529== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24529== by 0x7017D38: PetscInitialize (pinit.c:924) +==24529== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24529== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24529== by 0x1235DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24529== by 0x11EA0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24529== by 0x12152A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24529== by 0x1213CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24529== by 0x121A61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24529== by 0x11CE35: main (TestGmshMeshReader.cpp:19) +==24529== +==24529== Open file descriptor 115: +==24529== +==24529== +==24529== Open file descriptor 112: +==24529== +==24529== +==24529== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGmshMeshReader_valgrind.txt +==24529== +==24529== +==24529== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24529== +==24529== +==24529== +==24529== HEAP SUMMARY: +==24529== in use at exit: 618,222 bytes in 8,238 blocks +==24529== total heap usage: 50,711 allocs, 42,473 frees, 1,339,357,727 bytes allocated +==24529== +==24529== LEAK SUMMARY: +==24529== definitely lost: 0 bytes in 0 blocks +==24529== indirectly lost: 0 bytes in 0 blocks +==24529== possibly lost: 0 bytes in 0 blocks +==24529== still reachable: 24 bytes in 2 blocks +==24529== suppressed: 618,198 bytes in 8,236 blocks +==24529== Reachable blocks (those to which a pointer was found) are not shown. +==24529== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24529== +==24529== For lists of detected and suppressed errors, rerun with: -s +==24529== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestGoldbeter1991OdeSystem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestGoldbeter1991OdeSystem_valgrind.txt new file mode 100644 index 000000000..dced8a328 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestGoldbeter1991OdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25758== Memcheck, a memory error detector +==25758== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25758== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25758== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestGoldbeter1991OdeSystem -malloc_debug -malloc_dump -memory_info +==25758== Parent PID: 23903 +==25758== +==25758== +==25758== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25758== Open file descriptor 12: +==25758== at 0xEF9407D: pipe (pipe.c:29) +==25758== by 0x196AC07D: ??? +==25758== by 0x13C514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25758== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25758== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25758== by 0xD871D38: PetscInitialize (pinit.c:924) +==25758== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25758== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25758== by 0x124157: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25758== by 0x11F6A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25758== by 0x121BF4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25758== by 0x121AF0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25758== by 0x122103: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25758== by 0x11DEA5: main (TestGoldbeter1991OdeSystem.cpp:18) +==25758== +==25758== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25758== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25758== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25758== by 0xD71D822: ??? +==25758== by 0xD71D96F: ??? +==25758== by 0x13CF66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25758== by 0x13CF6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25758== by 0x13CAC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25758== by 0x13C512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25758== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25758== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25758== by 0xD871D38: PetscInitialize (pinit.c:924) +==25758== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25758== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25758== by 0x124157: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25758== by 0x11F6A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25758== by 0x121BF4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25758== by 0x121AF0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25758== by 0x122103: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25758== by 0x11DEA5: main (TestGoldbeter1991OdeSystem.cpp:18) +==25758== +==25758== Open file descriptor 115: +==25758== +==25758== +==25758== Open file descriptor 112: +==25758== +==25758== +==25758== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGoldbeter1991OdeSystem_valgrind.txt +==25758== +==25758== +==25758== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25758== +==25758== +==25758== +==25758== HEAP SUMMARY: +==25758== in use at exit: 618,318 bytes in 8,238 blocks +==25758== total heap usage: 63,220 allocs, 54,982 frees, 1,339,961,318 bytes allocated +==25758== +==25758== LEAK SUMMARY: +==25758== definitely lost: 0 bytes in 0 blocks +==25758== indirectly lost: 0 bytes in 0 blocks +==25758== possibly lost: 0 bytes in 0 blocks +==25758== still reachable: 24 bytes in 2 blocks +==25758== suppressed: 618,294 bytes in 8,236 blocks +==25758== Reachable blocks (those to which a pointer was found) are not shown. +==25758== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25758== +==25758== For lists of detected and suppressed errors, rerun with: -s +==25758== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestHdf5Converters_valgrind.txt b/log-files/2024-09-07_08-54-51/TestHdf5Converters_valgrind.txt new file mode 100644 index 000000000..70bd7f275 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestHdf5Converters_valgrind.txt @@ -0,0 +1,73 @@ +==25099== Memcheck, a memory error detector +==25099== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25099== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25099== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestHdf5Converters -malloc_debug -malloc_dump -memory_info +==25099== Parent PID: 23903 +==25099== +==25099== +==25099== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25099== Open file descriptor 12: +==25099== at 0x734507D: pipe (pipe.c:29) +==25099== by 0x104D507D: ??? +==25099== by 0xC6094CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25099== by 0x8DB9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25099== by 0x8D52D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25099== by 0x7694D38: PetscInitialize (pinit.c:924) +==25099== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25099== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25099== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25099== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25099== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25099== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25099== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25099== by 0x11B235: main (TestHdf5Converters.cpp:18) +==25099== +==25099== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25099== at 0x7349A1C: __open_nocancel (open64_nocancel.c:39) +==25099== by 0x72CDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25099== by 0x692E822: ??? +==25099== by 0x692E96F: ??? +==25099== by 0xC6AE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25099== by 0xC6AE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25099== by 0xC664922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25099== by 0xC6092DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25099== by 0x8DB9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25099== by 0x8D52D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25099== by 0x7694D38: PetscInitialize (pinit.c:924) +==25099== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25099== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25099== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25099== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25099== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25099== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25099== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25099== by 0x11B235: main (TestHdf5Converters.cpp:18) +==25099== +==25099== Open file descriptor 115: +==25099== +==25099== +==25099== Open file descriptor 112: +==25099== +==25099== +==25099== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5Converters_valgrind.txt +==25099== +==25099== +==25099== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25099== +==25099== +==25099== +==25099== HEAP SUMMARY: +==25099== in use at exit: 618,254 bytes in 8,238 blocks +==25099== total heap usage: 206,013 allocs, 197,775 frees, 1,394,471,341 bytes allocated +==25099== +==25099== LEAK SUMMARY: +==25099== definitely lost: 0 bytes in 0 blocks +==25099== indirectly lost: 0 bytes in 0 blocks +==25099== possibly lost: 0 bytes in 0 blocks +==25099== still reachable: 24 bytes in 2 blocks +==25099== suppressed: 618,230 bytes in 8,236 blocks +==25099== Reachable blocks (those to which a pointer was found) are not shown. +==25099== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25099== +==25099== For lists of detected and suppressed errors, rerun with: -s +==25099== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestHdf5DataReader_valgrind.txt b/log-files/2024-09-07_08-54-51/TestHdf5DataReader_valgrind.txt new file mode 100644 index 000000000..cd93cf22f --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestHdf5DataReader_valgrind.txt @@ -0,0 +1,73 @@ +==24161== Memcheck, a memory error detector +==24161== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24161== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24161== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info +==24161== Parent PID: 23903 +==24161== +==24161== +==24161== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24161== Open file descriptor 12: +==24161== at 0x645A07D: pipe (pipe.c:29) +==24161== by 0xAF1807D: ??? +==24161== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24161== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24161== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24161== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24161== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24161== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24161== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24161== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24161== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24161== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24161== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24161== by 0x1151B5: main (TestHdf5DataReader.cpp:19) +==24161== +==24161== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24161== at 0x645EA1C: __open_nocancel (open64_nocancel.c:39) +==24161== by 0x63E2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24161== by 0x5D25822: ??? +==24161== by 0x5D2596F: ??? +==24161== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24161== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24161== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24161== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24161== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24161== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24161== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24161== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24161== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24161== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24161== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24161== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24161== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24161== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24161== by 0x1151B5: main (TestHdf5DataReader.cpp:19) +==24161== +==24161== Open file descriptor 115: +==24161== +==24161== +==24161== Open file descriptor 112: +==24161== +==24161== +==24161== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt +==24161== +==24161== +==24161== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24161== +==24161== +==24161== +==24161== HEAP SUMMARY: +==24161== in use at exit: 618,334 bytes in 8,248 blocks +==24161== total heap usage: 58,548 allocs, 50,300 frees, 1,348,774,772 bytes allocated +==24161== +==24161== LEAK SUMMARY: +==24161== definitely lost: 0 bytes in 0 blocks +==24161== indirectly lost: 0 bytes in 0 blocks +==24161== possibly lost: 0 bytes in 0 blocks +==24161== still reachable: 24 bytes in 2 blocks +==24161== suppressed: 618,310 bytes in 8,246 blocks +==24161== Reachable blocks (those to which a pointer was found) are not shown. +==24161== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24161== +==24161== For lists of detected and suppressed errors, rerun with: -s +==24161== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestHdf5DataWriter_valgrind.txt b/log-files/2024-09-07_08-54-51/TestHdf5DataWriter_valgrind.txt new file mode 100644 index 000000000..6ed85369b --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestHdf5DataWriter_valgrind.txt @@ -0,0 +1,74 @@ +==24180== Memcheck, a memory error detector +==24180== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24180== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24180== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info +==24180== Parent PID: 23903 +==24180== +==24180== Warning: invalid file descriptor -1 in syscall close() +==24180== +==24180== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24180== Open file descriptor 12: +==24180== at 0x659107D: pipe (pipe.c:29) +==24180== by 0xAF1807D: ??? +==24180== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24180== by 0x61E0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24180== by 0x6179D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24180== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24180== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24180== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24180== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24180== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24180== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24180== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24180== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24180== by 0x115255: main (TestHdf5DataWriter.cpp:19) +==24180== +==24180== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24180== at 0x6595A1C: __open_nocancel (open64_nocancel.c:39) +==24180== by 0x6519BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24180== by 0x5D25822: ??? +==24180== by 0x5D2596F: ??? +==24180== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24180== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24180== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24180== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24180== by 0x61E0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24180== by 0x6179D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24180== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24180== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24180== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24180== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24180== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24180== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24180== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24180== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24180== by 0x115255: main (TestHdf5DataWriter.cpp:19) +==24180== +==24180== Open file descriptor 115: +==24180== +==24180== +==24180== Open file descriptor 112: +==24180== +==24180== +==24180== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt +==24180== +==24180== +==24180== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24180== +==24180== +==24180== +==24180== HEAP SUMMARY: +==24180== in use at exit: 618,334 bytes in 8,248 blocks +==24180== total heap usage: 114,802 allocs, 106,554 frees, 1,412,665,060 bytes allocated +==24180== +==24180== LEAK SUMMARY: +==24180== definitely lost: 0 bytes in 0 blocks +==24180== indirectly lost: 0 bytes in 0 blocks +==24180== possibly lost: 0 bytes in 0 blocks +==24180== still reachable: 24 bytes in 2 blocks +==24180== suppressed: 618,310 bytes in 8,246 blocks +==24180== Reachable blocks (those to which a pointer was found) are not shown. +==24180== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24180== +==24180== For lists of detected and suppressed errors, rerun with: -s +==24180== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestHdf5ToVisualizerConverters_valgrind.txt b/log-files/2024-09-07_08-54-51/TestHdf5ToVisualizerConverters_valgrind.txt new file mode 100644 index 000000000..3c26d8c39 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestHdf5ToVisualizerConverters_valgrind.txt @@ -0,0 +1,73 @@ +==43303== Memcheck, a memory error detector +==43303== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43303== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43303== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHdf5ToVisualizerConverters -malloc_debug -malloc_dump -memory_info +==43303== Parent PID: 23903 +==43303== +==43303== +==43303== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43303== Open file descriptor 12: +==43303== at 0xA8AB07D: pipe (pipe.c:29) +==43303== by 0x1432407D: ??? +==43303== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43303== by 0xBFA4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43303== by 0xBF3DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43303== by 0xAC34D38: PetscInitialize (pinit.c:924) +==43303== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43303== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43303== by 0x124324: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43303== by 0x11DB0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43303== by 0x120564: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43303== by 0x120404: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43303== by 0x120A9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43303== by 0x11BF35: main (TestHdf5ToVisualizerConverters.cpp:19) +==43303== +==43303== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43303== at 0xA8AFA1C: __open_nocancel (open64_nocancel.c:39) +==43303== by 0xA833BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43303== by 0xA1CC822: ??? +==43303== by 0xA1CC96F: ??? +==43303== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43303== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43303== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43303== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43303== by 0xBFA4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43303== by 0xBF3DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43303== by 0xAC34D38: PetscInitialize (pinit.c:924) +==43303== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43303== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43303== by 0x124324: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43303== by 0x11DB0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43303== by 0x120564: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43303== by 0x120404: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43303== by 0x120A9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43303== by 0x11BF35: main (TestHdf5ToVisualizerConverters.cpp:19) +==43303== +==43303== Open file descriptor 115: +==43303== +==43303== +==43303== Open file descriptor 112: +==43303== +==43303== +==43303== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5ToVisualizerConverters_valgrind.txt +==43303== +==43303== +==43303== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43303== +==43303== +==43303== +==43303== HEAP SUMMARY: +==43303== in use at exit: 618,334 bytes in 8,238 blocks +==43303== total heap usage: 120,271 allocs, 112,033 frees, 1,366,197,476 bytes allocated +==43303== +==43303== LEAK SUMMARY: +==43303== definitely lost: 0 bytes in 0 blocks +==43303== indirectly lost: 0 bytes in 0 blocks +==43303== possibly lost: 0 bytes in 0 blocks +==43303== still reachable: 24 bytes in 2 blocks +==43303== suppressed: 618,310 bytes in 8,236 blocks +==43303== Reachable blocks (those to which a pointer was found) are not shown. +==43303== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43303== +==43303== For lists of detected and suppressed errors, rerun with: -s +==43303== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestHeartConfig_valgrind.txt b/log-files/2024-09-07_08-54-51/TestHeartConfig_valgrind.txt new file mode 100644 index 000000000..537d073bf --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestHeartConfig_valgrind.txt @@ -0,0 +1,73 @@ +==43584== Memcheck, a memory error detector +==43584== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43584== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43584== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartConfig -malloc_debug -malloc_dump -memory_info +==43584== Parent PID: 23903 +==43584== +==43584== +==43584== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43584== Open file descriptor 12: +==43584== at 0xBA9407D: pipe (pipe.c:29) +==43584== by 0x1432407D: ??? +==43584== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43584== by 0xB382418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43584== by 0xB31BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43584== by 0xA012D38: PetscInitialize (pinit.c:924) +==43584== by 0x9E841D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43584== by 0x9E84227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43584== by 0x17E1E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43584== by 0x175CFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43584== by 0x179100: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43584== by 0x178FA0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43584== by 0x179637: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43584== by 0x174125: main (TestHeartConfig.cpp:19) +==43584== +==43584== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43584== at 0xBA98A1C: __open_nocancel (open64_nocancel.c:39) +==43584== by 0xBA1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43584== by 0x9EBE822: ??? +==43584== by 0x9EBE96F: ??? +==43584== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43584== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43584== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43584== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43584== by 0xB382418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43584== by 0xB31BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43584== by 0xA012D38: PetscInitialize (pinit.c:924) +==43584== by 0x9E841D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43584== by 0x9E84227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43584== by 0x17E1E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43584== by 0x175CFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43584== by 0x179100: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43584== by 0x178FA0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43584== by 0x179637: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43584== by 0x174125: main (TestHeartConfig.cpp:19) +==43584== +==43584== Open file descriptor 115: +==43584== +==43584== +==43584== Open file descriptor 112: +==43584== +==43584== +==43584== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartConfig_valgrind.txt +==43584== +==43584== +==43584== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43584== +==43584== +==43584== +==43584== HEAP SUMMARY: +==43584== in use at exit: 618,334 bytes in 8,238 blocks +==43584== total heap usage: 2,320,354 allocs, 2,312,116 frees, 2,008,576,374 bytes allocated +==43584== +==43584== LEAK SUMMARY: +==43584== definitely lost: 0 bytes in 0 blocks +==43584== indirectly lost: 0 bytes in 0 blocks +==43584== possibly lost: 0 bytes in 0 blocks +==43584== still reachable: 24 bytes in 2 blocks +==43584== suppressed: 618,310 bytes in 8,236 blocks +==43584== Reachable blocks (those to which a pointer was found) are not shown. +==43584== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43584== +==43584== For lists of detected and suppressed errors, rerun with: -s +==43584== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestHeartEventHandler_valgrind.txt b/log-files/2024-09-07_08-54-51/TestHeartEventHandler_valgrind.txt new file mode 100644 index 000000000..dd2070c20 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestHeartEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24030== Memcheck, a memory error detector +==24030== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24030== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24030== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestHeartEventHandler -malloc_debug -malloc_dump -memory_info +==24030== Parent PID: 23903 +==24030== +==24030== +==24030== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24030== Open file descriptor 12: +==24030== at 0x4DEB07D: pipe (pipe.c:29) +==24030== by 0xAEA307D: ??? +==24030== by 0x643A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24030== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24030== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24030== by 0x5036D38: PetscInitialize (pinit.c:924) +==24030== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24030== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24030== by 0x115454: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24030== by 0x11064D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24030== by 0x1134F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24030== by 0x113396: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24030== by 0x113A2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24030== by 0x10EA75: main (TestHeartEventHandler.cpp:19) +==24030== +==24030== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24030== at 0x4DEFA1C: __open_nocancel (open64_nocancel.c:39) +==24030== by 0x4D73BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24030== by 0x4934822: ??? +==24030== by 0x493496F: ??? +==24030== by 0x64E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24030== by 0x64E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24030== by 0x6497922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24030== by 0x643A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24030== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24030== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24030== by 0x5036D38: PetscInitialize (pinit.c:924) +==24030== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24030== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24030== by 0x115454: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24030== by 0x11064D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24030== by 0x1134F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24030== by 0x113396: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24030== by 0x113A2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24030== by 0x10EA75: main (TestHeartEventHandler.cpp:19) +==24030== +==24030== Open file descriptor 115: +==24030== +==24030== +==24030== Open file descriptor 112: +==24030== +==24030== +==24030== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartEventHandler_valgrind.txt +==24030== +==24030== +==24030== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24030== +==24030== +==24030== +==24030== HEAP SUMMARY: +==24030== in use at exit: 617,838 bytes in 8,238 blocks +==24030== total heap usage: 44,953 allocs, 36,715 frees, 1,338,164,051 bytes allocated +==24030== +==24030== LEAK SUMMARY: +==24030== definitely lost: 0 bytes in 0 blocks +==24030== indirectly lost: 0 bytes in 0 blocks +==24030== possibly lost: 0 bytes in 0 blocks +==24030== still reachable: 24 bytes in 2 blocks +==24030== suppressed: 617,814 bytes in 8,236 blocks +==24030== Reachable blocks (those to which a pointer was found) are not shown. +==24030== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24030== +==24030== For lists of detected and suppressed errors, rerun with: -s +==24030== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestHeartFileFinder_valgrind.txt b/log-files/2024-09-07_08-54-51/TestHeartFileFinder_valgrind.txt new file mode 100644 index 000000000..50bfa72ac --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestHeartFileFinder_valgrind.txt @@ -0,0 +1,73 @@ +==43603== Memcheck, a memory error detector +==43603== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43603== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43603== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartFileFinder -malloc_debug -malloc_dump -memory_info +==43603== Parent PID: 23903 +==43603== +==43603== +==43603== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43603== Open file descriptor 12: +==43603== at 0x856C07D: pipe (pipe.c:29) +==43603== by 0x1432407D: ??? +==43603== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43603== by 0x9C67418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43603== by 0x9C00D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43603== by 0x88F7D38: PetscInitialize (pinit.c:924) +==43603== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43603== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43603== by 0x11F18E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43603== by 0x11A2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43603== by 0x11C9B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43603== by 0x11C8AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43603== by 0x11CEBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43603== by 0x118AB5: main (TestHeartFileFinder.cpp:18) +==43603== +==43603== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43603== at 0x8570A1C: __open_nocancel (open64_nocancel.c:39) +==43603== by 0x84F4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43603== by 0x81D2822: ??? +==43603== by 0x81D296F: ??? +==43603== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43603== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43603== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43603== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43603== by 0x9C67418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43603== by 0x9C00D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43603== by 0x88F7D38: PetscInitialize (pinit.c:924) +==43603== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43603== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43603== by 0x11F18E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43603== by 0x11A2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43603== by 0x11C9B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43603== by 0x11C8AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43603== by 0x11CEBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43603== by 0x118AB5: main (TestHeartFileFinder.cpp:18) +==43603== +==43603== Open file descriptor 115: +==43603== +==43603== +==43603== Open file descriptor 112: +==43603== +==43603== +==43603== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartFileFinder_valgrind.txt +==43603== +==43603== +==43603== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43603== +==43603== +==43603== +==43603== HEAP SUMMARY: +==43603== in use at exit: 618,334 bytes in 8,238 blocks +==43603== total heap usage: 48,969 allocs, 40,731 frees, 1,338,596,024 bytes allocated +==43603== +==43603== LEAK SUMMARY: +==43603== definitely lost: 0 bytes in 0 blocks +==43603== indirectly lost: 0 bytes in 0 blocks +==43603== possibly lost: 0 bytes in 0 blocks +==43603== still reachable: 24 bytes in 2 blocks +==43603== suppressed: 618,310 bytes in 8,236 blocks +==43603== Reachable blocks (those to which a pointer was found) are not shown. +==43603== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43603== +==43603== For lists of detected and suppressed errors, rerun with: -s +==43603== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestHeartGeometryInformation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestHeartGeometryInformation_valgrind.txt new file mode 100644 index 000000000..33618f619 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestHeartGeometryInformation_valgrind.txt @@ -0,0 +1,73 @@ +==43606== Memcheck, a memory error detector +==43606== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43606== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43606== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartGeometryInformation -malloc_debug -malloc_dump -memory_info +==43606== Parent PID: 23903 +==43606== +==43606== +==43606== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43606== Open file descriptor 12: +==43606== at 0xA50C07D: pipe (pipe.c:29) +==43606== by 0x1432407D: ??? +==43606== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43606== by 0xBC07418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43606== by 0xBBA0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43606== by 0xA897D38: PetscInitialize (pinit.c:924) +==43606== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43606== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43606== by 0x11C60C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43606== by 0x117A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43606== by 0x11A4EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43606== by 0x11A38E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43606== by 0x11AA25: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43606== by 0x115E75: main (TestHeartGeometryInformation.cpp:19) +==43606== +==43606== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43606== at 0xA510A1C: __open_nocancel (open64_nocancel.c:39) +==43606== by 0xA494BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43606== by 0x9E2F822: ??? +==43606== by 0x9E2F96F: ??? +==43606== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43606== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43606== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43606== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43606== by 0xBC07418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43606== by 0xBBA0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43606== by 0xA897D38: PetscInitialize (pinit.c:924) +==43606== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43606== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43606== by 0x11C60C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43606== by 0x117A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43606== by 0x11A4EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43606== by 0x11A38E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43606== by 0x11AA25: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43606== by 0x115E75: main (TestHeartGeometryInformation.cpp:19) +==43606== +==43606== Open file descriptor 115: +==43606== +==43606== +==43606== Open file descriptor 112: +==43606== +==43606== +==43606== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartGeometryInformation_valgrind.txt +==43606== +==43606== +==43606== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43606== +==43606== +==43606== +==43606== HEAP SUMMARY: +==43606== in use at exit: 618,263 bytes in 8,234 blocks +==43606== total heap usage: 2,705,975 allocs, 2,697,741 frees, 1,653,759,626 bytes allocated +==43606== +==43606== LEAK SUMMARY: +==43606== definitely lost: 0 bytes in 0 blocks +==43606== indirectly lost: 0 bytes in 0 blocks +==43606== possibly lost: 0 bytes in 0 blocks +==43606== still reachable: 24 bytes in 2 blocks +==43606== suppressed: 618,239 bytes in 8,232 blocks +==43606== Reachable blocks (those to which a pointer was found) are not shown. +==43606== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43606== +==43606== For lists of detected and suppressed errors, rerun with: -s +==43606== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestHeartRegionCodes_valgrind.txt b/log-files/2024-09-07_08-54-51/TestHeartRegionCodes_valgrind.txt new file mode 100644 index 000000000..c7f00ea8c --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestHeartRegionCodes_valgrind.txt @@ -0,0 +1,36 @@ +==43614== Memcheck, a memory error detector +==43614== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43614== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43614== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartRegionCodes -malloc_debug -malloc_dump -memory_info +==43614== Parent PID: 23903 +==43614== +==43614== +==43614== FILE DESCRIPTORS: 7 open (3 std) at exit. +==43614== Open file descriptor 115: +==43614== +==43614== +==43614== Open file descriptor 112: +==43614== +==43614== +==43614== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartRegionCodes_valgrind.txt +==43614== +==43614== +==43614== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43614== +==43614== +==43614== +==43614== HEAP SUMMARY: +==43614== in use at exit: 24 bytes in 2 blocks +==43614== total heap usage: 7,159 allocs, 7,157 frees, 732,281 bytes allocated +==43614== +==43614== LEAK SUMMARY: +==43614== definitely lost: 0 bytes in 0 blocks +==43614== indirectly lost: 0 bytes in 0 blocks +==43614== possibly lost: 0 bytes in 0 blocks +==43614== still reachable: 24 bytes in 2 blocks +==43614== suppressed: 0 bytes in 0 blocks +==43614== Reachable blocks (those to which a pointer was found) are not shown. +==43614== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43614== +==43614== For lists of detected and suppressed errors, rerun with: -s +==43614== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-07_08-54-51/TestHelloWorld_valgrind.txt b/log-files/2024-09-07_08-54-51/TestHelloWorld_valgrind.txt new file mode 100644 index 000000000..8e7c5e45f --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestHelloWorld_valgrind.txt @@ -0,0 +1,73 @@ +==24031== Memcheck, a memory error detector +==24031== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24031== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24031== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestHelloWorld -malloc_debug -malloc_dump -memory_info +==24031== Parent PID: 23903 +==24031== +==24031== +==24031== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24031== Open file descriptor 12: +==24031== at 0x4CB207D: pipe (pipe.c:29) +==24031== by 0xAEA507D: ??? +==24031== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24031== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24031== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24031== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24031== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24031== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24031== by 0x110C3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24031== by 0x10CB53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24031== by 0x10ED04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24031== by 0x10EC00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24031== by 0x10F213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24031== by 0x10B355: main (TestHelloWorld.cpp:18) +==24031== +==24031== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24031== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24031== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24031== by 0x4934822: ??? +==24031== by 0x493496F: ??? +==24031== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24031== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24031== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24031== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24031== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24031== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24031== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24031== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24031== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24031== by 0x110C3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24031== by 0x10CB53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24031== by 0x10ED04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24031== by 0x10EC00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24031== by 0x10F213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24031== by 0x10B355: main (TestHelloWorld.cpp:18) +==24031== +==24031== Open file descriptor 115: +==24031== +==24031== +==24031== Open file descriptor 112: +==24031== +==24031== +==24031== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHelloWorld_valgrind.txt +==24031== +==24031== +==24031== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24031== +==24031== +==24031== +==24031== HEAP SUMMARY: +==24031== in use at exit: 617,838 bytes in 8,238 blocks +==24031== total heap usage: 44,910 allocs, 36,672 frees, 1,338,158,742 bytes allocated +==24031== +==24031== LEAK SUMMARY: +==24031== definitely lost: 0 bytes in 0 blocks +==24031== indirectly lost: 0 bytes in 0 blocks +==24031== possibly lost: 0 bytes in 0 blocks +==24031== still reachable: 24 bytes in 2 blocks +==24031== suppressed: 617,814 bytes in 8,236 blocks +==24031== Reachable blocks (those to which a pointer was found) are not shown. +==24031== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24031== +==24031== For lists of detected and suppressed errors, rerun with: -s +==24031== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestHeterogeneousConductivities_valgrind.txt b/log-files/2024-09-07_08-54-51/TestHeterogeneousConductivities_valgrind.txt new file mode 100644 index 000000000..4ce555072 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestHeterogeneousConductivities_valgrind.txt @@ -0,0 +1,73 @@ +==43621== Memcheck, a memory error detector +==43621== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43621== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43621== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeterogeneousConductivities -malloc_debug -malloc_dump -memory_info +==43621== Parent PID: 23903 +==43621== +==43621== +==43621== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43621== Open file descriptor 12: +==43621== at 0xA7DF07D: pipe (pipe.c:29) +==43621== by 0x1432407D: ??? +==43621== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43621== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43621== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43621== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43621== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43621== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43621== by 0x11BF54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43621== by 0x1174B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43621== by 0x119942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43621== by 0x11983E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43621== by 0x119E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43621== by 0x115CB5: main (TestHeterogeneousConductivities.cpp:18) +==43621== +==43621== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43621== at 0xA7E3A1C: __open_nocancel (open64_nocancel.c:39) +==43621== by 0xA767BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43621== by 0xA100822: ??? +==43621== by 0xA10096F: ??? +==43621== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43621== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43621== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43621== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43621== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43621== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43621== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43621== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43621== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43621== by 0x11BF54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43621== by 0x1174B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43621== by 0x119942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43621== by 0x11983E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43621== by 0x119E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43621== by 0x115CB5: main (TestHeterogeneousConductivities.cpp:18) +==43621== +==43621== Open file descriptor 115: +==43621== +==43621== +==43621== Open file descriptor 112: +==43621== +==43621== +==43621== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeterogeneousConductivities_valgrind.txt +==43621== +==43621== +==43621== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43621== +==43621== +==43621== +==43621== HEAP SUMMARY: +==43621== in use at exit: 618,814 bytes in 8,248 blocks +==43621== total heap usage: 201,472 allocs, 193,224 frees, 1,372,226,116 bytes allocated +==43621== +==43621== LEAK SUMMARY: +==43621== definitely lost: 0 bytes in 0 blocks +==43621== indirectly lost: 0 bytes in 0 blocks +==43621== possibly lost: 0 bytes in 0 blocks +==43621== still reachable: 24 bytes in 2 blocks +==43621== suppressed: 618,790 bytes in 8,246 blocks +==43621== Reachable blocks (those to which a pointer was found) are not shown. +==43621== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43621== +==43621== For lists of detected and suppressed errors, rerun with: -s +==43621== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 38) diff --git a/log-files/2024-09-07_08-54-51/TestHeun2IvpOdeSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestHeun2IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..a65ffed4c --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestHeun2IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24914== Memcheck, a memory error detector +==24914== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24914== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24914== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestHeun2IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24914== Parent PID: 23903 +==24914== +==24914== +==24914== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24914== Open file descriptor 12: +==24914== at 0x503907D: pipe (pipe.c:29) +==24914== by 0xB1E607D: ??? +==24914== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24914== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24914== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24914== by 0x5308D38: PetscInitialize (pinit.c:924) +==24914== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24914== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24914== by 0x127368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24914== by 0x1218FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24914== by 0x1243AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24914== by 0x12424F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24914== by 0x1248E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24914== by 0x11EEC5: main (TestHeun2IvpOdeSolver.cpp:19) +==24914== +==24914== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24914== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24914== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24914== by 0x4B76822: ??? +==24914== by 0x4B7696F: ??? +==24914== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24914== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24914== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24914== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24914== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24914== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24914== by 0x5308D38: PetscInitialize (pinit.c:924) +==24914== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24914== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24914== by 0x127368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24914== by 0x1218FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24914== by 0x1243AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24914== by 0x12424F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24914== by 0x1248E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24914== by 0x11EEC5: main (TestHeun2IvpOdeSolver.cpp:19) +==24914== +==24914== Open file descriptor 115: +==24914== +==24914== +==24914== Open file descriptor 112: +==24914== +==24914== +==24914== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeun2IvpOdeSolver_valgrind.txt +==24914== +==24914== +==24914== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24914== +==24914== +==24914== +==24914== HEAP SUMMARY: +==24914== in use at exit: 617,902 bytes in 8,238 blocks +==24914== total heap usage: 93,032 allocs, 84,794 frees, 1,339,245,990 bytes allocated +==24914== +==24914== LEAK SUMMARY: +==24914== definitely lost: 0 bytes in 0 blocks +==24914== indirectly lost: 0 bytes in 0 blocks +==24914== possibly lost: 0 bytes in 0 blocks +==24914== still reachable: 24 bytes in 2 blocks +==24914== suppressed: 617,878 bytes in 8,236 blocks +==24914== Reachable blocks (those to which a pointer was found) are not shown. +==24914== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24914== +==24914== For lists of detected and suppressed errors, rerun with: -s +==24914== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt new file mode 100644 index 000000000..98a57a3dc --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==41711== Memcheck, a memory error detector +==41711== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41711== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41711== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem -malloc_debug -malloc_dump -memory_info +==41711== Parent PID: 23903 +==41711== +==41711== +==41711== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41711== Open file descriptor 12: +==41711== at 0x856C07D: pipe (pipe.c:29) +==41711== by 0x1432407D: ??? +==41711== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41711== by 0x9C67418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41711== by 0x9C00D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41711== by 0x88F7D38: PetscInitialize (pinit.c:924) +==41711== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41711== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41711== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41711== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41711== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41711== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41711== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41711== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) +==41711== +==41711== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41711== at 0x8570A1C: __open_nocancel (open64_nocancel.c:39) +==41711== by 0x84F4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41711== by 0x81D2822: ??? +==41711== by 0x81D296F: ??? +==41711== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41711== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41711== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41711== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41711== by 0x9C67418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41711== by 0x9C00D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41711== by 0x88F7D38: PetscInitialize (pinit.c:924) +==41711== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41711== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41711== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41711== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41711== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41711== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41711== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41711== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) +==41711== +==41711== Open file descriptor 115: +==41711== +==41711== +==41711== Open file descriptor 112: +==41711== +==41711== +==41711== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt +==41711== +==41711== +==41711== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41711== +==41711== +==41711== +==41711== HEAP SUMMARY: +==41711== in use at exit: 618,334 bytes in 8,238 blocks +==41711== total heap usage: 49,005 allocs, 40,767 frees, 1,338,535,156 bytes allocated +==41711== +==41711== LEAK SUMMARY: +==41711== definitely lost: 0 bytes in 0 blocks +==41711== indirectly lost: 0 bytes in 0 blocks +==41711== possibly lost: 0 bytes in 0 blocks +==41711== still reachable: 24 bytes in 2 blocks +==41711== suppressed: 618,310 bytes in 8,236 blocks +==41711== Reachable blocks (those to which a pointer was found) are not shown. +==41711== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41711== +==41711== For lists of detected and suppressed errors, rerun with: -s +==41711== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestHoneycombMeshGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..4cdb9b77a --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24488== Memcheck, a memory error detector +==24488== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24488== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24488== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24488== Parent PID: 23903 +==24488== +==24488== +==24488== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24488== Open file descriptor 12: +==24488== at 0x81F007D: pipe (pipe.c:29) +==24488== by 0x100C307D: ??? +==24488== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24488== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24488== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24488== by 0x667ED38: PetscInitialize (pinit.c:924) +==24488== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24488== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24488== by 0x11C6C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24488== by 0x11776D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24488== by 0x11A4A8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24488== by 0x11A348: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24488== by 0x11A9DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24488== by 0x115B95: main (TestHoneycombMeshGenerator.cpp:19) +==24488== +==24488== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24488== at 0x81F4A1C: __open_nocancel (open64_nocancel.c:39) +==24488== by 0x8178BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24488== by 0x790D822: ??? +==24488== by 0x790D96F: ??? +==24488== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24488== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24488== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24488== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24488== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24488== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24488== by 0x667ED38: PetscInitialize (pinit.c:924) +==24488== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24488== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24488== by 0x11C6C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24488== by 0x11776D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24488== by 0x11A4A8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24488== by 0x11A348: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24488== by 0x11A9DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24488== by 0x115B95: main (TestHoneycombMeshGenerator.cpp:19) +==24488== +==24488== Open file descriptor 115: +==24488== +==24488== +==24488== Open file descriptor 112: +==24488== +==24488== +==24488== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHoneycombMeshGenerator_valgrind.txt +==24488== +==24488== +==24488== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24488== +==24488== +==24488== +==24488== HEAP SUMMARY: +==24488== in use at exit: 620,774 bytes in 8,239 blocks +==24488== total heap usage: 1,200,537 allocs, 1,192,298 frees, 1,378,997,280 bytes allocated +==24488== +==24488== LEAK SUMMARY: +==24488== definitely lost: 0 bytes in 0 blocks +==24488== indirectly lost: 0 bytes in 0 blocks +==24488== possibly lost: 0 bytes in 0 blocks +==24488== still reachable: 2,576 bytes in 3 blocks +==24488== suppressed: 618,198 bytes in 8,236 blocks +==24488== Reachable blocks (those to which a pointer was found) are not shown. +==24488== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24488== +==24488== For lists of detected and suppressed errors, rerun with: -s +==24488== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..99383484a --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24627== Memcheck, a memory error detector +==24627== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24627== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24627== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24627== Parent PID: 23903 +==24627== +==24627== +==24627== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24627== Open file descriptor 12: +==24627== at 0x6C5407D: pipe (pipe.c:29) +==24627== by 0x100C507D: ??? +==24627== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24627== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24627== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24627== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24627== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24627== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24627== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24627== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24627== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24627== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24627== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24627== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) +==24627== +==24627== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24627== at 0x6C58A1C: __open_nocancel (open64_nocancel.c:39) +==24627== by 0x6BDCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24627== by 0x658F822: ??? +==24627== by 0x658F96F: ??? +==24627== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24627== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24627== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24627== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24627== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24627== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24627== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24627== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24627== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24627== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24627== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24627== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24627== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24627== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24627== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) +==24627== +==24627== Open file descriptor 115: +==24627== +==24627== +==24627== Open file descriptor 112: +==24627== +==24627== +==24627== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHoneycombVertexMeshGenerator_valgrind.txt +==24627== +==24627== +==24627== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24627== +==24627== +==24627== +==24627== HEAP SUMMARY: +==24627== in use at exit: 618,222 bytes in 8,238 blocks +==24627== total heap usage: 412,638 allocs, 404,400 frees, 1,357,654,643 bytes allocated +==24627== +==24627== LEAK SUMMARY: +==24627== definitely lost: 0 bytes in 0 blocks +==24627== indirectly lost: 0 bytes in 0 blocks +==24627== possibly lost: 0 bytes in 0 blocks +==24627== still reachable: 24 bytes in 2 blocks +==24627== suppressed: 618,198 bytes in 8,236 blocks +==24627== Reachable blocks (those to which a pointer was found) are not shown. +==24627== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24627== +==24627== For lists of detected and suppressed errors, rerun with: -s +==24627== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestImmersedBoundary2dArrays_valgrind.txt b/log-files/2024-09-07_08-54-51/TestImmersedBoundary2dArrays_valgrind.txt new file mode 100644 index 000000000..b09f6eb37 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestImmersedBoundary2dArrays_valgrind.txt @@ -0,0 +1,73 @@ +==24739== Memcheck, a memory error detector +==24739== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24739== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24739== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundary2dArrays -malloc_debug -malloc_dump -memory_info +==24739== Parent PID: 23903 +==24739== +==24739== +==24739== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24739== Open file descriptor 12: +==24739== at 0x81F007D: pipe (pipe.c:29) +==24739== by 0x100C307D: ??? +==24739== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24739== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24739== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24739== by 0x667ED38: PetscInitialize (pinit.c:924) +==24739== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24739== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24739== by 0x12E481: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24739== by 0x129F13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24739== by 0x12C4B2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24739== by 0x12C3AD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24739== by 0x12C9C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24739== by 0x128715: main (TestImmersedBoundary2dArrays.cpp:18) +==24739== +==24739== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24739== at 0x81F4A1C: __open_nocancel (open64_nocancel.c:39) +==24739== by 0x8178BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24739== by 0x790D822: ??? +==24739== by 0x790D96F: ??? +==24739== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24739== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24739== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24739== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24739== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24739== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24739== by 0x667ED38: PetscInitialize (pinit.c:924) +==24739== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24739== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24739== by 0x12E481: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24739== by 0x129F13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24739== by 0x12C4B2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24739== by 0x12C3AD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24739== by 0x12C9C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24739== by 0x128715: main (TestImmersedBoundary2dArrays.cpp:18) +==24739== +==24739== Open file descriptor 115: +==24739== +==24739== +==24739== Open file descriptor 112: +==24739== +==24739== +==24739== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundary2dArrays_valgrind.txt +==24739== +==24739== +==24739== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24739== +==24739== +==24739== +==24739== HEAP SUMMARY: +==24739== in use at exit: 620,774 bytes in 8,239 blocks +==24739== total heap usage: 49,873 allocs, 41,634 frees, 1,345,273,332 bytes allocated +==24739== +==24739== LEAK SUMMARY: +==24739== definitely lost: 0 bytes in 0 blocks +==24739== indirectly lost: 0 bytes in 0 blocks +==24739== possibly lost: 0 bytes in 0 blocks +==24739== still reachable: 2,576 bytes in 3 blocks +==24739== suppressed: 618,198 bytes in 8,236 blocks +==24739== Reachable blocks (those to which a pointer was found) are not shown. +==24739== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24739== +==24739== For lists of detected and suppressed errors, rerun with: -s +==24739== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestImmersedBoundaryCellPopulation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryCellPopulation_valgrind.txt new file mode 100644 index 000000000..1f6d2eb34 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==25910== Memcheck, a memory error detector +==25910== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25910== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25910== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundaryCellPopulation -malloc_debug -malloc_dump -memory_info +==25910== Parent PID: 23903 +==25910== +==25910== +==25910== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25910== Open file descriptor 12: +==25910== at 0x10CF207D: pipe (pipe.c:29) +==25910== by 0x196AD07D: ??? +==25910== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25910== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25910== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25910== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25910== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25910== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25910== by 0x17AFD3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25910== by 0x1732C9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25910== by 0x1765FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25910== by 0x17649C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25910== by 0x176B33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25910== by 0x1716E5: main (TestImmersedBoundaryCellPopulation.cpp:19) +==25910== +==25910== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25910== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==25910== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25910== by 0xF136822: ??? +==25910== by 0xF13696F: ??? +==25910== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25910== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25910== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25910== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25910== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25910== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25910== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25910== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25910== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25910== by 0x17AFD3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25910== by 0x1732C9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25910== by 0x1765FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25910== by 0x17649C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25910== by 0x176B33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25910== by 0x1716E5: main (TestImmersedBoundaryCellPopulation.cpp:19) +==25910== +==25910== Open file descriptor 115: +==25910== +==25910== +==25910== Open file descriptor 112: +==25910== +==25910== +==25910== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryCellPopulation_valgrind.txt +==25910== +==25910== +==25910== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25910== +==25910== +==25910== +==25910== HEAP SUMMARY: +==25910== in use at exit: 618,350 bytes in 8,239 blocks +==25910== total heap usage: 114,142 allocs, 105,903 frees, 1,385,784,178 bytes allocated +==25910== +==25910== LEAK SUMMARY: +==25910== definitely lost: 0 bytes in 0 blocks +==25910== indirectly lost: 0 bytes in 0 blocks +==25910== possibly lost: 0 bytes in 0 blocks +==25910== still reachable: 56 bytes in 3 blocks +==25910== suppressed: 618,294 bytes in 8,236 blocks +==25910== Reachable blocks (those to which a pointer was found) are not shown. +==25910== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25910== +==25910== For lists of detected and suppressed errors, rerun with: -s +==25910== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestImmersedBoundaryDivisionRules_valgrind.txt b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryDivisionRules_valgrind.txt new file mode 100644 index 000000000..94260d167 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==25923== Memcheck, a memory error detector +==25923== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25923== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25923== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundaryDivisionRules -malloc_debug -malloc_dump -memory_info +==25923== Parent PID: 23903 +==25923== +==25923== +==25923== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25923== Open file descriptor 12: +==25923== at 0x10CF207D: pipe (pipe.c:29) +==25923== by 0x196AD07D: ??? +==25923== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25923== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25923== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25923== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25923== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25923== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25923== by 0x13B60B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25923== by 0x136903: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25923== by 0x138ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25923== by 0x138DD4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25923== by 0x1393E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25923== by 0x135105: main (TestImmersedBoundaryDivisionRules.cpp:18) +==25923== +==25923== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25923== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==25923== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25923== by 0xF136822: ??? +==25923== by 0xF13696F: ??? +==25923== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25923== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25923== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25923== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25923== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25923== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25923== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25923== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25923== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25923== by 0x13B60B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25923== by 0x136903: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25923== by 0x138ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25923== by 0x138DD4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25923== by 0x1393E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25923== by 0x135105: main (TestImmersedBoundaryDivisionRules.cpp:18) +==25923== +==25923== Open file descriptor 115: +==25923== +==25923== +==25923== Open file descriptor 112: +==25923== +==25923== +==25923== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryDivisionRules_valgrind.txt +==25923== +==25923== +==25923== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25923== +==25923== +==25923== +==25923== HEAP SUMMARY: +==25923== in use at exit: 618,350 bytes in 8,239 blocks +==25923== total heap usage: 53,314 allocs, 45,075 frees, 1,339,217,476 bytes allocated +==25923== +==25923== LEAK SUMMARY: +==25923== definitely lost: 0 bytes in 0 blocks +==25923== indirectly lost: 0 bytes in 0 blocks +==25923== possibly lost: 0 bytes in 0 blocks +==25923== still reachable: 56 bytes in 3 blocks +==25923== suppressed: 618,294 bytes in 8,236 blocks +==25923== Reachable blocks (those to which a pointer was found) are not shown. +==25923== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25923== +==25923== For lists of detected and suppressed errors, rerun with: -s +==25923== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestImmersedBoundaryElement_valgrind.txt b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryElement_valgrind.txt new file mode 100644 index 000000000..14ca1b2f8 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryElement_valgrind.txt @@ -0,0 +1,73 @@ +==24746== Memcheck, a memory error detector +==24746== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24746== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24746== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryElement -malloc_debug -malloc_dump -memory_info +==24746== Parent PID: 23903 +==24746== +==24746== +==24746== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24746== Open file descriptor 12: +==24746== at 0x7DC407D: pipe (pipe.c:29) +==24746== by 0x100C307D: ??? +==24746== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24746== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24746== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24746== by 0x667ED38: PetscInitialize (pinit.c:924) +==24746== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24746== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24746== by 0x119A65: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24746== by 0x11544D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24746== by 0x117AA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24746== by 0x117942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24746== by 0x117FD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24746== by 0x113875: main (TestImmersedBoundaryElement.cpp:19) +==24746== +==24746== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24746== at 0x7DC8A1C: __open_nocancel (open64_nocancel.c:39) +==24746== by 0x7D4CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24746== by 0x790D822: ??? +==24746== by 0x790D96F: ??? +==24746== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24746== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24746== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24746== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24746== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24746== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24746== by 0x667ED38: PetscInitialize (pinit.c:924) +==24746== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24746== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24746== by 0x119A65: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24746== by 0x11544D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24746== by 0x117AA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24746== by 0x117942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24746== by 0x117FD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24746== by 0x113875: main (TestImmersedBoundaryElement.cpp:19) +==24746== +==24746== Open file descriptor 115: +==24746== +==24746== +==24746== Open file descriptor 112: +==24746== +==24746== +==24746== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryElement_valgrind.txt +==24746== +==24746== +==24746== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24746== +==24746== +==24746== +==24746== HEAP SUMMARY: +==24746== in use at exit: 618,222 bytes in 8,238 blocks +==24746== total heap usage: 47,355 allocs, 39,117 frees, 1,338,386,727 bytes allocated +==24746== +==24746== LEAK SUMMARY: +==24746== definitely lost: 0 bytes in 0 blocks +==24746== indirectly lost: 0 bytes in 0 blocks +==24746== possibly lost: 0 bytes in 0 blocks +==24746== still reachable: 24 bytes in 2 blocks +==24746== suppressed: 618,198 bytes in 8,236 blocks +==24746== Reachable blocks (those to which a pointer was found) are not shown. +==24746== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24746== +==24746== For lists of detected and suppressed errors, rerun with: -s +==24746== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestImmersedBoundaryFftInterface_valgrind.txt b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryFftInterface_valgrind.txt new file mode 100644 index 000000000..2bfbe292a --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryFftInterface_valgrind.txt @@ -0,0 +1,73 @@ +==24753== Memcheck, a memory error detector +==24753== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24753== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24753== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryFftInterface -malloc_debug -malloc_dump -memory_info +==24753== Parent PID: 23903 +==24753== +==24753== +==24753== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24753== Open file descriptor 12: +==24753== at 0x810907D: pipe (pipe.c:29) +==24753== by 0x100C307D: ??? +==24753== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24753== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24753== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24753== by 0x667ED38: PetscInitialize (pinit.c:924) +==24753== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24753== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24753== by 0x11A441: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24753== by 0x115DD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24753== by 0x1184B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24753== by 0x1183B3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24753== by 0x1189C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24753== by 0x1145D5: main (TestImmersedBoundaryFftInterface.cpp:18) +==24753== +==24753== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24753== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24753== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24753== by 0x790D822: ??? +==24753== by 0x790D96F: ??? +==24753== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24753== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24753== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24753== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24753== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24753== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24753== by 0x667ED38: PetscInitialize (pinit.c:924) +==24753== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24753== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24753== by 0x11A441: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24753== by 0x115DD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24753== by 0x1184B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24753== by 0x1183B3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24753== by 0x1189C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24753== by 0x1145D5: main (TestImmersedBoundaryFftInterface.cpp:18) +==24753== +==24753== Open file descriptor 115: +==24753== +==24753== +==24753== Open file descriptor 112: +==24753== +==24753== +==24753== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryFftInterface_valgrind.txt +==24753== +==24753== +==24753== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24753== +==24753== +==24753== +==24753== HEAP SUMMARY: +==24753== in use at exit: 618,222 bytes in 8,238 blocks +==24753== total heap usage: 48,771 allocs, 40,533 frees, 1,346,895,804 bytes allocated +==24753== +==24753== LEAK SUMMARY: +==24753== definitely lost: 0 bytes in 0 blocks +==24753== indirectly lost: 0 bytes in 0 blocks +==24753== possibly lost: 0 bytes in 0 blocks +==24753== still reachable: 24 bytes in 2 blocks +==24753== suppressed: 618,198 bytes in 8,236 blocks +==24753== Reachable blocks (those to which a pointer was found) are not shown. +==24753== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24753== +==24753== For lists of detected and suppressed errors, rerun with: -s +==24753== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestImmersedBoundaryForces_valgrind.txt b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryForces_valgrind.txt new file mode 100644 index 000000000..971c42583 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryForces_valgrind.txt @@ -0,0 +1,73 @@ +==25924== Memcheck, a memory error detector +==25924== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25924== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25924== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundaryForces -malloc_debug -malloc_dump -memory_info +==25924== Parent PID: 23903 +==25924== +==25924== +==25924== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25924== Open file descriptor 12: +==25924== at 0x10D8107D: pipe (pipe.c:29) +==25924== by 0x196AD07D: ??? +==25924== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25924== by 0x10689418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25924== by 0x10622D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25924== by 0xF319D38: PetscInitialize (pinit.c:924) +==25924== by 0xF18B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25924== by 0xF18B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25924== by 0x14A869: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25924== by 0x1430BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25924== by 0x145F70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25924== by 0x145E10: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25924== by 0x1464A7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25924== by 0x1414E5: main (TestImmersedBoundaryForces.cpp:19) +==25924== +==25924== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25924== at 0x10D85A1C: __open_nocancel (open64_nocancel.c:39) +==25924== by 0x10D09BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25924== by 0xF1C5822: ??? +==25924== by 0xF1C596F: ??? +==25924== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25924== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25924== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25924== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25924== by 0x10689418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25924== by 0x10622D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25924== by 0xF319D38: PetscInitialize (pinit.c:924) +==25924== by 0xF18B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25924== by 0xF18B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25924== by 0x14A869: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25924== by 0x1430BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25924== by 0x145F70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25924== by 0x145E10: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25924== by 0x1464A7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25924== by 0x1414E5: main (TestImmersedBoundaryForces.cpp:19) +==25924== +==25924== Open file descriptor 115: +==25924== +==25924== +==25924== Open file descriptor 112: +==25924== +==25924== +==25924== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryForces_valgrind.txt +==25924== +==25924== +==25924== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25924== +==25924== +==25924== +==25924== HEAP SUMMARY: +==25924== in use at exit: 618,350 bytes in 8,239 blocks +==25924== total heap usage: 63,282 allocs, 55,043 frees, 1,343,085,798 bytes allocated +==25924== +==25924== LEAK SUMMARY: +==25924== definitely lost: 0 bytes in 0 blocks +==25924== indirectly lost: 0 bytes in 0 blocks +==25924== possibly lost: 0 bytes in 0 blocks +==25924== still reachable: 56 bytes in 3 blocks +==25924== suppressed: 618,294 bytes in 8,236 blocks +==25924== Reachable blocks (those to which a pointer was found) are not shown. +==25924== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25924== +==25924== For lists of detected and suppressed errors, rerun with: -s +==25924== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..79802ed58 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24763== Memcheck, a memory error detector +==24763== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24763== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24763== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24763== Parent PID: 23903 +==24763== +==24763== +==24763== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24763== Open file descriptor 12: +==24763== at 0x810907D: pipe (pipe.c:29) +==24763== by 0x100C307D: ??? +==24763== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24763== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24763== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24763== by 0x667ED38: PetscInitialize (pinit.c:924) +==24763== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24763== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24763== by 0x11345D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24763== by 0x10EDD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24763== by 0x111410: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24763== by 0x11130B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24763== by 0x11191F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24763== by 0x10D5D5: main (TestImmersedBoundaryHoneycombMeshGenerator.cpp:18) +==24763== +==24763== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24763== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24763== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24763== by 0x790D822: ??? +==24763== by 0x790D96F: ??? +==24763== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24763== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24763== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24763== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24763== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24763== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24763== by 0x667ED38: PetscInitialize (pinit.c:924) +==24763== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24763== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24763== by 0x11345D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24763== by 0x10EDD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24763== by 0x111410: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24763== by 0x11130B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24763== by 0x11191F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24763== by 0x10D5D5: main (TestImmersedBoundaryHoneycombMeshGenerator.cpp:18) +==24763== +==24763== Open file descriptor 115: +==24763== +==24763== +==24763== Open file descriptor 112: +==24763== +==24763== +==24763== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt +==24763== +==24763== +==24763== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24763== +==24763== +==24763== +==24763== HEAP SUMMARY: +==24763== in use at exit: 618,222 bytes in 8,238 blocks +==24763== total heap usage: 51,861 allocs, 43,623 frees, 1,340,453,125 bytes allocated +==24763== +==24763== LEAK SUMMARY: +==24763== definitely lost: 0 bytes in 0 blocks +==24763== indirectly lost: 0 bytes in 0 blocks +==24763== possibly lost: 0 bytes in 0 blocks +==24763== still reachable: 24 bytes in 2 blocks +==24763== suppressed: 618,198 bytes in 8,236 blocks +==24763== Reachable blocks (those to which a pointer was found) are not shown. +==24763== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24763== +==24763== For lists of detected and suppressed errors, rerun with: -s +==24763== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestImmersedBoundaryMeshReader_valgrind.txt b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryMeshReader_valgrind.txt new file mode 100644 index 000000000..0d1ed95d5 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24772== Memcheck, a memory error detector +==24772== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24772== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24772== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMeshReader -malloc_debug -malloc_dump -memory_info +==24772== Parent PID: 23903 +==24772== +==24772== +==24772== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24772== Open file descriptor 12: +==24772== at 0x810907D: pipe (pipe.c:29) +==24772== by 0x100C307D: ??? +==24772== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24772== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24772== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24772== by 0x667ED38: PetscInitialize (pinit.c:924) +==24772== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24772== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24772== by 0x119F95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24772== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24772== by 0x117F84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24772== by 0x117E25: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24772== by 0x1184BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24772== by 0x113AB5: main (TestImmersedBoundaryMeshReader.cpp:19) +==24772== +==24772== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24772== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24772== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24772== by 0x790D822: ??? +==24772== by 0x790D96F: ??? +==24772== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24772== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24772== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24772== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24772== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24772== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24772== by 0x667ED38: PetscInitialize (pinit.c:924) +==24772== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24772== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24772== by 0x119F95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24772== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24772== by 0x117F84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24772== by 0x117E25: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24772== by 0x1184BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24772== by 0x113AB5: main (TestImmersedBoundaryMeshReader.cpp:19) +==24772== +==24772== Open file descriptor 115: +==24772== +==24772== +==24772== Open file descriptor 112: +==24772== +==24772== +==24772== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMeshReader_valgrind.txt +==24772== +==24772== +==24772== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24772== +==24772== +==24772== +==24772== HEAP SUMMARY: +==24772== in use at exit: 618,222 bytes in 8,238 blocks +==24772== total heap usage: 49,719 allocs, 41,481 frees, 1,339,666,744 bytes allocated +==24772== +==24772== LEAK SUMMARY: +==24772== definitely lost: 0 bytes in 0 blocks +==24772== indirectly lost: 0 bytes in 0 blocks +==24772== possibly lost: 0 bytes in 0 blocks +==24772== still reachable: 24 bytes in 2 blocks +==24772== suppressed: 618,198 bytes in 8,236 blocks +==24772== Reachable blocks (those to which a pointer was found) are not shown. +==24772== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24772== +==24772== For lists of detected and suppressed errors, rerun with: -s +==24772== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestImmersedBoundaryMeshWriter_valgrind.txt b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryMeshWriter_valgrind.txt new file mode 100644 index 000000000..feeeb89cf --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryMeshWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24785== Memcheck, a memory error detector +==24785== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24785== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24785== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMeshWriter -malloc_debug -malloc_dump -memory_info +==24785== Parent PID: 23903 +==24785== +==24785== +==24785== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24785== Open file descriptor 12: +==24785== at 0x81F007D: pipe (pipe.c:29) +==24785== by 0x100C307D: ??? +==24785== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24785== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24785== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24785== by 0x667ED38: PetscInitialize (pinit.c:924) +==24785== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24785== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24785== by 0x12285F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24785== by 0x11C5F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24785== by 0x11EE24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24785== by 0x11ED1F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24785== by 0x11F333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24785== by 0x11ADF5: main (TestImmersedBoundaryMeshWriter.cpp:18) +==24785== +==24785== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24785== at 0x81F4A1C: __open_nocancel (open64_nocancel.c:39) +==24785== by 0x8178BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24785== by 0x790D822: ??? +==24785== by 0x790D96F: ??? +==24785== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24785== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24785== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24785== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24785== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24785== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24785== by 0x667ED38: PetscInitialize (pinit.c:924) +==24785== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24785== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24785== by 0x12285F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24785== by 0x11C5F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24785== by 0x11EE24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24785== by 0x11ED1F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24785== by 0x11F333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24785== by 0x11ADF5: main (TestImmersedBoundaryMeshWriter.cpp:18) +==24785== +==24785== Open file descriptor 115: +==24785== +==24785== +==24785== Open file descriptor 112: +==24785== +==24785== +==24785== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMeshWriter_valgrind.txt +==24785== +==24785== +==24785== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24785== +==24785== +==24785== +==24785== HEAP SUMMARY: +==24785== in use at exit: 618,222 bytes in 8,238 blocks +==24785== total heap usage: 49,819 allocs, 41,581 frees, 1,339,464,694 bytes allocated +==24785== +==24785== LEAK SUMMARY: +==24785== definitely lost: 0 bytes in 0 blocks +==24785== indirectly lost: 0 bytes in 0 blocks +==24785== possibly lost: 0 bytes in 0 blocks +==24785== still reachable: 24 bytes in 2 blocks +==24785== suppressed: 618,198 bytes in 8,236 blocks +==24785== Reachable blocks (those to which a pointer was found) are not shown. +==24785== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24785== +==24785== For lists of detected and suppressed errors, rerun with: -s +==24785== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestImmersedBoundaryMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryMesh_valgrind.txt new file mode 100644 index 000000000..4b440a235 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24770== Memcheck, a memory error detector +==24770== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24770== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24770== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMesh -malloc_debug -malloc_dump -memory_info +==24770== Parent PID: 23903 +==24770== +==24770== +==24770== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24770== Open file descriptor 12: +==24770== at 0x82C307D: pipe (pipe.c:29) +==24770== by 0x100C507D: ??? +==24770== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24770== by 0x7AE4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24770== by 0x7A7DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24770== by 0x6774D38: PetscInitialize (pinit.c:924) +==24770== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24770== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24770== by 0x161451: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24770== by 0x15BC59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24770== by 0x15EDDE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24770== by 0x15EC7F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24770== by 0x15F315: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24770== by 0x15A075: main (TestImmersedBoundaryMesh.cpp:19) +==24770== +==24770== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24770== at 0x82C7A1C: __open_nocancel (open64_nocancel.c:39) +==24770== by 0x824BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24770== by 0x661E822: ??? +==24770== by 0x661E96F: ??? +==24770== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24770== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24770== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24770== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24770== by 0x7AE4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24770== by 0x7A7DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24770== by 0x6774D38: PetscInitialize (pinit.c:924) +==24770== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24770== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24770== by 0x161451: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24770== by 0x15BC59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24770== by 0x15EDDE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24770== by 0x15EC7F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24770== by 0x15F315: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24770== by 0x15A075: main (TestImmersedBoundaryMesh.cpp:19) +==24770== +==24770== Open file descriptor 115: +==24770== +==24770== +==24770== Open file descriptor 112: +==24770== +==24770== +==24770== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMesh_valgrind.txt +==24770== +==24770== +==24770== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24770== +==24770== +==24770== +==24770== HEAP SUMMARY: +==24770== in use at exit: 620,774 bytes in 8,239 blocks +==24770== total heap usage: 94,790 allocs, 86,551 frees, 1,370,840,730 bytes allocated +==24770== +==24770== LEAK SUMMARY: +==24770== definitely lost: 0 bytes in 0 blocks +==24770== indirectly lost: 0 bytes in 0 blocks +==24770== possibly lost: 0 bytes in 0 blocks +==24770== still reachable: 2,576 bytes in 3 blocks +==24770== suppressed: 618,198 bytes in 8,236 blocks +==24770== Reachable blocks (those to which a pointer was found) are not shown. +==24770== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24770== +==24770== For lists of detected and suppressed errors, rerun with: -s +==24770== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt new file mode 100644 index 000000000..2205ad7a6 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24786== Memcheck, a memory error detector +==24786== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24786== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24786== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryPalisadeMeshGenerator -malloc_debug -malloc_dump -memory_info +==24786== Parent PID: 23903 +==24786== +==24786== +==24786== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24786== Open file descriptor 12: +==24786== at 0x810907D: pipe (pipe.c:29) +==24786== by 0x100C307D: ??? +==24786== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24786== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24786== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24786== by 0x667ED38: PetscInitialize (pinit.c:924) +==24786== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24786== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24786== by 0x114D1D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24786== by 0x1103ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24786== by 0x112D9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24786== by 0x112C3A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24786== by 0x1132D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24786== by 0x10E815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) +==24786== +==24786== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24786== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24786== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24786== by 0x790D822: ??? +==24786== by 0x790D96F: ??? +==24786== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24786== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24786== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24786== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24786== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24786== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24786== by 0x667ED38: PetscInitialize (pinit.c:924) +==24786== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24786== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24786== by 0x114D1D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24786== by 0x1103ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24786== by 0x112D9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24786== by 0x112C3A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24786== by 0x1132D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24786== by 0x10E815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) +==24786== +==24786== Open file descriptor 115: +==24786== +==24786== +==24786== Open file descriptor 112: +==24786== +==24786== +==24786== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt +==24786== +==24786== +==24786== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24786== +==24786== +==24786== +==24786== HEAP SUMMARY: +==24786== in use at exit: 620,774 bytes in 8,239 blocks +==24786== total heap usage: 57,742 allocs, 49,503 frees, 1,359,243,580 bytes allocated +==24786== +==24786== LEAK SUMMARY: +==24786== definitely lost: 0 bytes in 0 blocks +==24786== indirectly lost: 0 bytes in 0 blocks +==24786== possibly lost: 0 bytes in 0 blocks +==24786== still reachable: 2,576 bytes in 3 blocks +==24786== suppressed: 618,198 bytes in 8,236 blocks +==24786== Reachable blocks (those to which a pointer was found) are not shown. +==24786== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24786== +==24786== For lists of detected and suppressed errors, rerun with: -s +==24786== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestImmersedBoundarySimulationModifier_valgrind.txt b/log-files/2024-09-07_08-54-51/TestImmersedBoundarySimulationModifier_valgrind.txt new file mode 100644 index 000000000..474cb3aef --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestImmersedBoundarySimulationModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26312== Memcheck, a memory error detector +==26312== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26312== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26312== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundarySimulationModifier -malloc_debug -malloc_dump -memory_info +==26312== Parent PID: 23903 +==26312== +==26312== +==26312== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26312== Open file descriptor 12: +==26312== at 0x10CF207D: pipe (pipe.c:29) +==26312== by 0x196AD07D: ??? +==26312== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26312== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26312== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26312== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26312== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26312== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26312== by 0x15313B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26312== by 0x14B9ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26312== by 0x14EA8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26312== by 0x14E92E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26312== by 0x14EFC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26312== by 0x149E15: main (TestImmersedBoundarySimulationModifier.cpp:19) +==26312== +==26312== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26312== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26312== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26312== by 0xF136822: ??? +==26312== by 0xF13696F: ??? +==26312== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26312== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26312== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26312== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26312== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26312== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26312== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26312== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26312== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26312== by 0x15313B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26312== by 0x14B9ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26312== by 0x14EA8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26312== by 0x14E92E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26312== by 0x14EFC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26312== by 0x149E15: main (TestImmersedBoundarySimulationModifier.cpp:19) +==26312== +==26312== Open file descriptor 115: +==26312== +==26312== +==26312== Open file descriptor 112: +==26312== +==26312== +==26312== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundarySimulationModifier_valgrind.txt +==26312== +==26312== +==26312== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26312== +==26312== +==26312== +==26312== HEAP SUMMARY: +==26312== in use at exit: 618,279 bytes in 8,235 blocks +==26312== total heap usage: 3,405,972 allocs, 3,397,737 frees, 1,588,211,286 bytes allocated +==26312== +==26312== LEAK SUMMARY: +==26312== definitely lost: 0 bytes in 0 blocks +==26312== indirectly lost: 0 bytes in 0 blocks +==26312== possibly lost: 0 bytes in 0 blocks +==26312== still reachable: 56 bytes in 3 blocks +==26312== suppressed: 618,223 bytes in 8,232 blocks +==26312== Reachable blocks (those to which a pointer was found) are not shown. +==26312== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26312== +==26312== For lists of detected and suppressed errors, rerun with: -s +==26312== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestImmersedBoundarySvgWriter_valgrind.txt b/log-files/2024-09-07_08-54-51/TestImmersedBoundarySvgWriter_valgrind.txt new file mode 100644 index 000000000..6a8052f40 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestImmersedBoundarySvgWriter_valgrind.txt @@ -0,0 +1,73 @@ +==26313== Memcheck, a memory error detector +==26313== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26313== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26313== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundarySvgWriter -malloc_debug -malloc_dump -memory_info +==26313== Parent PID: 23903 +==26313== +==26313== +==26313== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26313== Open file descriptor 12: +==26313== at 0x10CF207D: pipe (pipe.c:29) +==26313== by 0x196AD07D: ??? +==26313== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26313== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26313== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26313== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26313== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26313== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26313== by 0x1430FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26313== by 0x13BF73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26313== by 0x13ECEA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26313== by 0x13EBE5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26313== by 0x13F1F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26313== by 0x13A775: main (TestImmersedBoundarySvgWriter.cpp:18) +==26313== +==26313== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26313== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26313== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26313== by 0xF136822: ??? +==26313== by 0xF13696F: ??? +==26313== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26313== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26313== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26313== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26313== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26313== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26313== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26313== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26313== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26313== by 0x1430FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26313== by 0x13BF73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26313== by 0x13ECEA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26313== by 0x13EBE5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26313== by 0x13F1F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26313== by 0x13A775: main (TestImmersedBoundarySvgWriter.cpp:18) +==26313== +==26313== Open file descriptor 115: +==26313== +==26313== +==26313== Open file descriptor 112: +==26313== +==26313== +==26313== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundarySvgWriter_valgrind.txt +==26313== +==26313== +==26313== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26313== +==26313== +==26313== +==26313== HEAP SUMMARY: +==26313== in use at exit: 620,870 bytes in 8,239 blocks +==26313== total heap usage: 53,571 allocs, 45,332 frees, 1,339,069,977 bytes allocated +==26313== +==26313== LEAK SUMMARY: +==26313== definitely lost: 0 bytes in 0 blocks +==26313== indirectly lost: 0 bytes in 0 blocks +==26313== possibly lost: 0 bytes in 0 blocks +==26313== still reachable: 2,576 bytes in 3 blocks +==26313== suppressed: 618,294 bytes in 8,236 blocks +==26313== Reachable blocks (those to which a pointer was found) are not shown. +==26313== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26313== +==26313== For lists of detected and suppressed errors, rerun with: -s +==26313== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestImpedancePostProcessor_valgrind.txt b/log-files/2024-09-07_08-54-51/TestImpedancePostProcessor_valgrind.txt new file mode 100644 index 000000000..2a1169726 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestImpedancePostProcessor_valgrind.txt @@ -0,0 +1,36 @@ +==40869== Memcheck, a memory error detector +==40869== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40869== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40869== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestImpedancePostProcessor -malloc_debug -malloc_dump -memory_info +==40869== Parent PID: 23903 +==40869== +==40869== +==40869== FILE DESCRIPTORS: 7 open (3 std) at exit. +==40869== Open file descriptor 115: +==40869== +==40869== +==40869== Open file descriptor 112: +==40869== +==40869== +==40869== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImpedancePostProcessor_valgrind.txt +==40869== +==40869== +==40869== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40869== +==40869== +==40869== +==40869== HEAP SUMMARY: +==40869== in use at exit: 24 bytes in 2 blocks +==40869== total heap usage: 5,749 allocs, 5,747 frees, 616,789 bytes allocated +==40869== +==40869== LEAK SUMMARY: +==40869== definitely lost: 0 bytes in 0 blocks +==40869== indirectly lost: 0 bytes in 0 blocks +==40869== possibly lost: 0 bytes in 0 blocks +==40869== still reachable: 24 bytes in 2 blocks +==40869== suppressed: 0 bytes in 0 blocks +==40869== Reachable blocks (those to which a pointer was found) are not shown. +==40869== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40869== +==40869== For lists of detected and suppressed errors, rerun with: -s +==40869== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-07_08-54-51/TestImplicitCardiacMechanicsSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestImplicitCardiacMechanicsSolver_valgrind.txt new file mode 100644 index 000000000..85c5dd93f --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestImplicitCardiacMechanicsSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43082== Memcheck, a memory error detector +==43082== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43082== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43082== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestImplicitCardiacMechanicsSolver -malloc_debug -malloc_dump -memory_info +==43082== Parent PID: 23903 +==43082== +==43082== +==43082== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43082== Open file descriptor 12: +==43082== at 0xBF1F07D: pipe (pipe.c:29) +==43082== by 0x1432607D: ??? +==43082== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43082== by 0xC11C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43082== by 0xC0B5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43082== by 0xA4CAD38: PetscInitialize (pinit.c:924) +==43082== by 0xA3A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43082== by 0xA3A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43082== by 0x12D058: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43082== by 0x127F95: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43082== by 0x12ABEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43082== by 0x12AA8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43082== by 0x12B123: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43082== by 0x126275: main (TestImplicitCardiacMechanicsSolver.cpp:19) +==43082== +==43082== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43082== at 0xBF23A1C: __open_nocancel (open64_nocancel.c:39) +==43082== by 0xBEA7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43082== by 0xB759822: ??? +==43082== by 0xB75996F: ??? +==43082== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43082== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43082== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43082== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43082== by 0xC11C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43082== by 0xC0B5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43082== by 0xA4CAD38: PetscInitialize (pinit.c:924) +==43082== by 0xA3A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43082== by 0xA3A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43082== by 0x12D058: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43082== by 0x127F95: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43082== by 0x12ABEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43082== by 0x12AA8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43082== by 0x12B123: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43082== by 0x126275: main (TestImplicitCardiacMechanicsSolver.cpp:19) +==43082== +==43082== Open file descriptor 115: +==43082== +==43082== +==43082== Open file descriptor 112: +==43082== +==43082== +==43082== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImplicitCardiacMechanicsSolver_valgrind.txt +==43082== +==43082== +==43082== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43082== +==43082== +==43082== +==43082== HEAP SUMMARY: +==43082== in use at exit: 618,263 bytes in 8,234 blocks +==43082== total heap usage: 1,348,935 allocs, 1,340,701 frees, 1,479,980,874 bytes allocated +==43082== +==43082== LEAK SUMMARY: +==43082== definitely lost: 0 bytes in 0 blocks +==43082== indirectly lost: 0 bytes in 0 blocks +==43082== possibly lost: 0 bytes in 0 blocks +==43082== still reachable: 24 bytes in 2 blocks +==43082== suppressed: 618,239 bytes in 8,232 blocks +==43082== Reachable blocks (those to which a pointer was found) are not shown. +==43082== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43082== +==43082== For lists of detected and suppressed errors, rerun with: -s +==43082== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2024-09-07_08-54-51/TestIncompressibleNonlinearElasticitySolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestIncompressibleNonlinearElasticitySolver_valgrind.txt new file mode 100644 index 000000000..9424f7946 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestIncompressibleNonlinearElasticitySolver_valgrind.txt @@ -0,0 +1,73 @@ +==25167== Memcheck, a memory error detector +==25167== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25167== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25167== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestIncompressibleNonlinearElasticitySolver -malloc_debug -malloc_dump -memory_info +==25167== Parent PID: 23903 +==25167== +==25167== +==25167== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25167== Open file descriptor 12: +==25167== at 0x840107D: pipe (pipe.c:29) +==25167== by 0x106D707D: ??? +==25167== by 0xBF1F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25167== by 0x7C22418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25167== by 0x7BBBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25167== by 0x688FD38: PetscInitialize (pinit.c:924) +==25167== by 0x67661D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25167== by 0x6766227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25167== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25167== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25167== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25167== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25167== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25167== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) +==25167== +==25167== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25167== at 0x8405A1C: __open_nocancel (open64_nocancel.c:39) +==25167== by 0x8389BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25167== by 0x7B1E822: ??? +==25167== by 0x7B1E96F: ??? +==25167== by 0xBFC46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25167== by 0xBFC4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25167== by 0xBF7A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25167== by 0xBF1F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25167== by 0x7C22418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25167== by 0x7BBBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25167== by 0x688FD38: PetscInitialize (pinit.c:924) +==25167== by 0x67661D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25167== by 0x6766227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25167== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25167== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25167== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25167== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25167== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25167== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) +==25167== +==25167== Open file descriptor 115: +==25167== +==25167== +==25167== Open file descriptor 112: +==25167== +==25167== +==25167== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIncompressibleNonlinearElasticitySolver_valgrind.txt +==25167== +==25167== +==25167== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25167== +==25167== +==25167== +==25167== HEAP SUMMARY: +==25167== in use at exit: 618,199 bytes in 8,234 blocks +==25167== total heap usage: 638,259 allocs, 630,025 frees, 1,498,243,286 bytes allocated +==25167== +==25167== LEAK SUMMARY: +==25167== definitely lost: 0 bytes in 0 blocks +==25167== indirectly lost: 0 bytes in 0 blocks +==25167== possibly lost: 0 bytes in 0 blocks +==25167== still reachable: 24 bytes in 2 blocks +==25167== suppressed: 618,175 bytes in 8,232 blocks +==25167== Reachable blocks (those to which a pointer was found) are not shown. +==25167== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25167== +==25167== For lists of detected and suppressed errors, rerun with: -s +==25167== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestIonicModelsWithSacs_valgrind.txt b/log-files/2024-09-07_08-54-51/TestIonicModelsWithSacs_valgrind.txt new file mode 100644 index 000000000..1d5bb591f --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestIonicModelsWithSacs_valgrind.txt @@ -0,0 +1,73 @@ +==42302== Memcheck, a memory error detector +==42302== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42302== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42302== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestIonicModelsWithSacs -malloc_debug -malloc_dump -memory_info +==42302== Parent PID: 23903 +==42302== +==42302== +==42302== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42302== Open file descriptor 12: +==42302== at 0x9C6507D: pipe (pipe.c:29) +==42302== by 0x1432407D: ??? +==42302== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42302== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42302== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42302== by 0x8505D38: PetscInitialize (pinit.c:924) +==42302== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42302== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42302== by 0x11A0FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42302== by 0x1145B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42302== by 0x116CB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42302== by 0x116BAD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42302== by 0x1171C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42302== by 0x112DB5: main (TestIonicModelsWithSacs.cpp:18) +==42302== +==42302== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42302== at 0x9C69A1C: __open_nocancel (open64_nocancel.c:39) +==42302== by 0x9BEDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42302== by 0x9794822: ??? +==42302== by 0x979496F: ??? +==42302== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42302== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42302== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42302== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42302== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42302== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42302== by 0x8505D38: PetscInitialize (pinit.c:924) +==42302== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42302== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42302== by 0x11A0FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42302== by 0x1145B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42302== by 0x116CB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42302== by 0x116BAD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42302== by 0x1171C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42302== by 0x112DB5: main (TestIonicModelsWithSacs.cpp:18) +==42302== +==42302== Open file descriptor 115: +==42302== +==42302== +==42302== Open file descriptor 112: +==42302== +==42302== +==42302== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIonicModelsWithSacs_valgrind.txt +==42302== +==42302== +==42302== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42302== +==42302== +==42302== +==42302== HEAP SUMMARY: +==42302== in use at exit: 618,334 bytes in 8,238 blocks +==42302== total heap usage: 481,199 allocs, 472,961 frees, 1,442,367,040 bytes allocated +==42302== +==42302== LEAK SUMMARY: +==42302== definitely lost: 0 bytes in 0 blocks +==42302== indirectly lost: 0 bytes in 0 blocks +==42302== possibly lost: 0 bytes in 0 blocks +==42302== still reachable: 24 bytes in 2 blocks +==42302== suppressed: 618,310 bytes in 8,236 blocks +==42302== Reachable blocks (those to which a pointer was found) are not shown. +==42302== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42302== +==42302== For lists of detected and suppressed errors, rerun with: -s +==42302== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestIonicModels_valgrind.txt b/log-files/2024-09-07_08-54-51/TestIonicModels_valgrind.txt new file mode 100644 index 000000000..2ab52e248 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestIonicModels_valgrind.txt @@ -0,0 +1,73 @@ +==41841== Memcheck, a memory error detector +==41841== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41841== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41841== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestIonicModels -malloc_debug -malloc_dump -memory_info +==41841== Parent PID: 23903 +==41841== +==41841== +==41841== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41841== Open file descriptor 12: +==41841== at 0x9D1A07D: pipe (pipe.c:29) +==41841== by 0x1432407D: ??? +==41841== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41841== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41841== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41841== by 0x85DDD38: PetscInitialize (pinit.c:924) +==41841== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41841== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41841== by 0x1365FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41841== by 0x130B0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41841== by 0x133AAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41841== by 0x13394E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41841== by 0x133FE5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41841== by 0x12BDA5: main (TestIonicModels.cpp:19) +==41841== +==41841== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41841== at 0x9D1EA1C: __open_nocancel (open64_nocancel.c:39) +==41841== by 0x9CA2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41841== by 0x8489822: ??? +==41841== by 0x848996F: ??? +==41841== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41841== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41841== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41841== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41841== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41841== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41841== by 0x85DDD38: PetscInitialize (pinit.c:924) +==41841== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41841== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41841== by 0x1365FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41841== by 0x130B0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41841== by 0x133AAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41841== by 0x13394E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41841== by 0x133FE5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41841== by 0x12BDA5: main (TestIonicModels.cpp:19) +==41841== +==41841== Open file descriptor 115: +==41841== +==41841== +==41841== Open file descriptor 112: +==41841== +==41841== +==41841== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIonicModels_valgrind.txt +==41841== +==41841== +==41841== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41841== +==41841== +==41841== +==41841== HEAP SUMMARY: +==41841== in use at exit: 620,043 bytes in 8,238 blocks +==41841== total heap usage: 1,892,204 allocs, 1,883,966 frees, 3,069,793,307 bytes allocated +==41841== +==41841== LEAK SUMMARY: +==41841== definitely lost: 0 bytes in 0 blocks +==41841== indirectly lost: 0 bytes in 0 blocks +==41841== possibly lost: 0 bytes in 0 blocks +==41841== still reachable: 1,804 bytes in 6 blocks +==41841== suppressed: 618,239 bytes in 8,232 blocks +==41841== Reachable blocks (those to which a pointer was found) are not shown. +==41841== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41841== +==41841== For lists of detected and suppressed errors, rerun with: -s +==41841== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestLinearBasisFunction_valgrind.txt b/log-files/2024-09-07_08-54-51/TestLinearBasisFunction_valgrind.txt new file mode 100644 index 000000000..eb7dbd866 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestLinearBasisFunction_valgrind.txt @@ -0,0 +1,73 @@ +==25100== Memcheck, a memory error detector +==25100== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25100== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25100== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearBasisFunction -malloc_debug -malloc_dump -memory_info +==25100== Parent PID: 23903 +==25100== +==25100== +==25100== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25100== Open file descriptor 12: +==25100== at 0x6CAC07D: pipe (pipe.c:29) +==25100== by 0x104D507D: ??? +==25100== by 0xC31D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25100== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25100== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25100== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25100== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25100== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25100== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25100== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25100== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25100== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25100== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25100== by 0x11B875: main (TestLinearBasisFunction.cpp:18) +==25100== +==25100== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25100== at 0x6CB0A1C: __open_nocancel (open64_nocancel.c:39) +==25100== by 0x6C34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25100== by 0x692E822: ??? +==25100== by 0x692E96F: ??? +==25100== by 0xC3C26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25100== by 0xC3C2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25100== by 0xC378922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25100== by 0xC31D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25100== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25100== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25100== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25100== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25100== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25100== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25100== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25100== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25100== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25100== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25100== by 0x11B875: main (TestLinearBasisFunction.cpp:18) +==25100== +==25100== Open file descriptor 115: +==25100== +==25100== +==25100== Open file descriptor 112: +==25100== +==25100== +==25100== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearBasisFunction_valgrind.txt +==25100== +==25100== +==25100== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25100== +==25100== +==25100== +==25100== HEAP SUMMARY: +==25100== in use at exit: 618,254 bytes in 8,238 blocks +==25100== total heap usage: 47,356 allocs, 39,118 frees, 1,338,386,778 bytes allocated +==25100== +==25100== LEAK SUMMARY: +==25100== definitely lost: 0 bytes in 0 blocks +==25100== indirectly lost: 0 bytes in 0 blocks +==25100== possibly lost: 0 bytes in 0 blocks +==25100== still reachable: 24 bytes in 2 blocks +==25100== suppressed: 618,230 bytes in 8,236 blocks +==25100== Reachable blocks (those to which a pointer was found) are not shown. +==25100== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25100== +==25100== For lists of detected and suppressed errors, rerun with: -s +==25100== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt new file mode 100644 index 000000000..3c36604c1 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24938== Memcheck, a memory error detector +==24938== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24938== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24938== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearParabolicPdeSystemForCoupledOdeSystem -malloc_debug -malloc_dump -memory_info +==24938== Parent PID: 23903 +==24938== +==24938== +==24938== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24938== Open file descriptor 12: +==24938== at 0x7DC407D: pipe (pipe.c:29) +==24938== by 0x100C307D: ??? +==24938== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24938== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24938== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24938== by 0x6680D38: PetscInitialize (pinit.c:924) +==24938== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24938== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24938== by 0x1173E3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24938== by 0x112E53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24938== by 0x11519C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24938== by 0x115097: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24938== by 0x1156AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24938== by 0x111655: main (TestLinearParabolicPdeSystemForCoupledOdeSystem.cpp:18) +==24938== +==24938== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24938== at 0x7DC8A1C: __open_nocancel (open64_nocancel.c:39) +==24938== by 0x7D4CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24938== by 0x790F822: ??? +==24938== by 0x790F96F: ??? +==24938== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24938== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24938== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24938== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24938== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24938== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24938== by 0x6680D38: PetscInitialize (pinit.c:924) +==24938== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24938== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24938== by 0x1173E3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24938== by 0x112E53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24938== by 0x11519C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24938== by 0x115097: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24938== by 0x1156AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24938== by 0x111655: main (TestLinearParabolicPdeSystemForCoupledOdeSystem.cpp:18) +==24938== +==24938== Open file descriptor 115: +==24938== +==24938== +==24938== Open file descriptor 112: +==24938== +==24938== +==24938== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt +==24938== +==24938== +==24938== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24938== +==24938== +==24938== +==24938== HEAP SUMMARY: +==24938== in use at exit: 618,222 bytes in 8,238 blocks +==24938== total heap usage: 47,308 allocs, 39,070 frees, 1,338,382,229 bytes allocated +==24938== +==24938== LEAK SUMMARY: +==24938== definitely lost: 0 bytes in 0 blocks +==24938== indirectly lost: 0 bytes in 0 blocks +==24938== possibly lost: 0 bytes in 0 blocks +==24938== still reachable: 24 bytes in 2 blocks +==24938== suppressed: 618,198 bytes in 8,236 blocks +==24938== Reachable blocks (those to which a pointer was found) are not shown. +==24938== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24938== +==24938== For lists of detected and suppressed errors, rerun with: -s +==24938== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt new file mode 100644 index 000000000..5c7b99111 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24958== Memcheck, a memory error detector +==24958== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24958== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24958== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver -malloc_debug -malloc_dump -memory_info +==24958== Parent PID: 23903 +==24958== +==24958== +==24958== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24958== Open file descriptor 12: +==24958== at 0x87B607D: pipe (pipe.c:29) +==24958== by 0x1080507D: ??? +==24958== by 0xC6194CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24958== by 0x8DAA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24958== by 0x8D43D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24958== by 0x6D61D38: PetscInitialize (pinit.c:924) +==24958== by 0x6C381D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24958== by 0x6C38227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24958== by 0x199CB4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24958== by 0x191511: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24958== by 0x1949B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24958== by 0x194858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24958== by 0x194EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24958== by 0x18F635: main (TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver.cpp:19) +==24958== +==24958== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24958== at 0x87BAA1C: __open_nocancel (open64_nocancel.c:39) +==24958== by 0x873EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24958== by 0x7FF0822: ??? +==24958== by 0x7FF096F: ??? +==24958== by 0xC6BE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24958== by 0xC6BE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24958== by 0xC674922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24958== by 0xC6192DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24958== by 0x8DAA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24958== by 0x8D43D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24958== by 0x6D61D38: PetscInitialize (pinit.c:924) +==24958== by 0x6C381D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24958== by 0x6C38227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24958== by 0x199CB4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24958== by 0x191511: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24958== by 0x1949B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24958== by 0x194858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24958== by 0x194EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24958== by 0x18F635: main (TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver.cpp:19) +==24958== +==24958== Open file descriptor 115: +==24958== +==24958== +==24958== Open file descriptor 112: +==24958== +==24958== +==24958== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt +==24958== +==24958== +==24958== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24958== +==24958== +==24958== +==24958== HEAP SUMMARY: +==24958== in use at exit: 620,783 bytes in 8,235 blocks +==24958== total heap usage: 2,554,385 allocs, 2,546,150 frees, 1,577,428,775 bytes allocated +==24958== +==24958== LEAK SUMMARY: +==24958== definitely lost: 0 bytes in 0 blocks +==24958== indirectly lost: 0 bytes in 0 blocks +==24958== possibly lost: 0 bytes in 0 blocks +==24958== still reachable: 2,576 bytes in 3 blocks +==24958== suppressed: 618,207 bytes in 8,232 blocks +==24958== Reachable blocks (those to which a pointer was found) are not shown. +==24958== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24958== +==24958== For lists of detected and suppressed errors, rerun with: -s +==24958== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt b/log-files/2024-09-07_08-54-51/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt new file mode 100644 index 000000000..de8176981 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt @@ -0,0 +1,73 @@ +==40183== Memcheck, a memory error detector +==40183== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40183== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40183== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestLinearSpringWithVariableSpringConstantsForce -malloc_debug -malloc_dump -memory_info +==40183== Parent PID: 23903 +==40183== +==40183== +==40183== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40183== Open file descriptor 12: +==40183== at 0x111E407D: pipe (pipe.c:29) +==40183== by 0x1B36F07D: ??? +==40183== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40183== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40183== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40183== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40183== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40183== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40183== by 0x165A7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40183== by 0x15DE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40183== by 0x160FB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40183== by 0x160E58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40183== by 0x1614EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40183== by 0x15C295: main (TestLinearSpringWithVariableSpringConstantsForce.cpp:19) +==40183== +==40183== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40183== at 0x111E8A1C: __open_nocancel (open64_nocancel.c:39) +==40183== by 0x1116CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40183== by 0x109F6822: ??? +==40183== by 0x109F696F: ??? +==40183== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40183== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40183== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40183== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40183== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40183== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40183== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40183== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40183== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40183== by 0x165A7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40183== by 0x15DE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40183== by 0x160FB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40183== by 0x160E58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40183== by 0x1614EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40183== by 0x15C295: main (TestLinearSpringWithVariableSpringConstantsForce.cpp:19) +==40183== +==40183== Open file descriptor 115: +==40183== +==40183== +==40183== Open file descriptor 112: +==40183== +==40183== +==40183== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt +==40183== +==40183== +==40183== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40183== +==40183== +==40183== +==40183== HEAP SUMMARY: +==40183== in use at exit: 618,366 bytes in 8,239 blocks +==40183== total heap usage: 555,643 allocs, 547,404 frees, 1,383,864,958 bytes allocated +==40183== +==40183== LEAK SUMMARY: +==40183== definitely lost: 0 bytes in 0 blocks +==40183== indirectly lost: 0 bytes in 0 blocks +==40183== possibly lost: 0 bytes in 0 blocks +==40183== still reachable: 56 bytes in 3 blocks +==40183== suppressed: 618,310 bytes in 8,236 blocks +==40183== Reachable blocks (those to which a pointer was found) are not shown. +==40183== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40183== +==40183== For lists of detected and suppressed errors, rerun with: -s +==40183== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestLinearSystem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestLinearSystem_valgrind.txt new file mode 100644 index 000000000..fe50e85bc --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestLinearSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24211== Memcheck, a memory error detector +==24211== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24211== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24211== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestLinearSystem -malloc_debug -malloc_dump -memory_info +==24211== Parent PID: 23903 +==24211== +==24211== +==24211== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24211== Open file descriptor 12: +==24211== at 0x610307D: pipe (pipe.c:29) +==24211== by 0xAF3907D: ??? +==24211== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24211== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24211== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24211== by 0x4B19D38: PetscInitialize (pinit.c:924) +==24211== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24211== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24211== by 0x135370: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24211== by 0x12FAC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24211== by 0x132BF0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24211== by 0x132A90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24211== by 0x133127: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24211== by 0x12DEE5: main (TestLinearSystem.cpp:19) +==24211== +==24211== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24211== at 0x6107A1C: __open_nocancel (open64_nocancel.c:39) +==24211== by 0x608BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24211== by 0x49C3822: ??? +==24211== by 0x49C396F: ??? +==24211== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24211== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24211== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24211== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24211== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24211== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24211== by 0x4B19D38: PetscInitialize (pinit.c:924) +==24211== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24211== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24211== by 0x135370: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24211== by 0x12FAC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24211== by 0x132BF0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24211== by 0x132A90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24211== by 0x133127: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24211== by 0x12DEE5: main (TestLinearSystem.cpp:19) +==24211== +==24211== Open file descriptor 115: +==24211== +==24211== +==24211== Open file descriptor 112: +==24211== +==24211== +==24211== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearSystem_valgrind.txt +==24211== +==24211== +==24211== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24211== +==24211== +==24211== +==24211== HEAP SUMMARY: +==24211== in use at exit: 617,870 bytes in 8,239 blocks +==24211== total heap usage: 59,953 allocs, 51,714 frees, 1,374,856,940 bytes allocated +==24211== +==24211== LEAK SUMMARY: +==24211== definitely lost: 0 bytes in 0 blocks +==24211== indirectly lost: 0 bytes in 0 blocks +==24211== possibly lost: 0 bytes in 0 blocks +==24211== still reachable: 40 bytes in 3 blocks +==24211== suppressed: 617,830 bytes in 8,236 blocks +==24211== Reachable blocks (those to which a pointer was found) are not shown. +==24211== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24211== +==24211== For lists of detected and suppressed errors, rerun with: -s +==24211== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestLobePropertiesCalculator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestLobePropertiesCalculator_valgrind.txt new file mode 100644 index 000000000..74043f4b6 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestLobePropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==40913== Memcheck, a memory error detector +==40913== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40913== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40913== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestLobePropertiesCalculator -malloc_debug -malloc_dump -memory_info +==40913== Parent PID: 23903 +==40913== +==40913== +==40913== FILE DESCRIPTORS: 7 open (3 std) at exit. +==40913== Open file descriptor 115: +==40913== +==40913== +==40913== Open file descriptor 112: +==40913== +==40913== +==40913== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLobePropertiesCalculator_valgrind.txt +==40913== +==40913== +==40913== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40913== +==40913== +==40913== +==40913== HEAP SUMMARY: +==40913== in use at exit: 24 bytes in 2 blocks +==40913== total heap usage: 134,423 allocs, 134,421 frees, 48,976,300 bytes allocated +==40913== +==40913== LEAK SUMMARY: +==40913== definitely lost: 0 bytes in 0 blocks +==40913== indirectly lost: 0 bytes in 0 blocks +==40913== possibly lost: 0 bytes in 0 blocks +==40913== still reachable: 24 bytes in 2 blocks +==40913== suppressed: 0 bytes in 0 blocks +==40913== Reachable blocks (those to which a pointer was found) are not shown. +==40913== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40913== +==40913== For lists of detected and suppressed errors, rerun with: -s +==40913== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-07_08-54-51/TestLogFile_valgrind.txt b/log-files/2024-09-07_08-54-51/TestLogFile_valgrind.txt new file mode 100644 index 000000000..f0fdd726b --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestLogFile_valgrind.txt @@ -0,0 +1,73 @@ +==24032== Memcheck, a memory error detector +==24032== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24032== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24032== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestLogFile -malloc_debug -malloc_dump -memory_info +==24032== Parent PID: 23903 +==24032== +==24032== +==24032== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24032== Open file descriptor 12: +==24032== at 0x616907D: pipe (pipe.c:29) +==24032== by 0xAEA507D: ??? +==24032== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24032== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24032== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24032== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24032== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24032== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24032== by 0x11A18F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24032== by 0x11398D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24032== by 0x116442: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24032== by 0x1162E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24032== by 0x116979: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24032== by 0x111DB5: main (TestLogFile.cpp:19) +==24032== +==24032== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24032== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24032== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24032== by 0x5CB2822: ??? +==24032== by 0x5CB296F: ??? +==24032== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24032== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24032== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24032== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24032== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24032== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24032== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24032== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24032== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24032== by 0x11A18F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24032== by 0x11398D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24032== by 0x116442: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24032== by 0x1162E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24032== by 0x116979: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24032== by 0x111DB5: main (TestLogFile.cpp:19) +==24032== +==24032== Open file descriptor 115: +==24032== +==24032== +==24032== Open file descriptor 112: +==24032== +==24032== +==24032== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLogFile_valgrind.txt +==24032== +==24032== +==24032== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24032== +==24032== +==24032== +==24032== HEAP SUMMARY: +==24032== in use at exit: 617,838 bytes in 8,238 blocks +==24032== total heap usage: 45,249 allocs, 37,011 frees, 1,338,411,491 bytes allocated +==24032== +==24032== LEAK SUMMARY: +==24032== definitely lost: 0 bytes in 0 blocks +==24032== indirectly lost: 0 bytes in 0 blocks +==24032== possibly lost: 0 bytes in 0 blocks +==24032== still reachable: 24 bytes in 2 blocks +==24032== suppressed: 617,814 bytes in 8,236 blocks +==24032== Reachable blocks (those to which a pointer was found) are not shown. +==24032== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24032== +==24032== For lists of detected and suppressed errors, rerun with: -s +==24032== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestMajorAirwaysCentreLinesCleaner_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMajorAirwaysCentreLinesCleaner_valgrind.txt new file mode 100644 index 000000000..420886c56 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMajorAirwaysCentreLinesCleaner_valgrind.txt @@ -0,0 +1,73 @@ +==40933== Memcheck, a memory error detector +==40933== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40933== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40933== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMajorAirwaysCentreLinesCleaner -malloc_debug -malloc_dump -memory_info +==40933== Parent PID: 23903 +==40933== +==40933== +==40933== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40933== Open file descriptor 12: +==40933== at 0x822907D: pipe (pipe.c:29) +==40933== by 0x107A407D: ??? +==40933== by 0xBFCD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40933== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40933== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40933== by 0x679ED38: PetscInitialize (pinit.c:924) +==40933== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40933== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40933== by 0x11675D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40933== by 0x1121F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40933== by 0x1146F0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40933== by 0x1145EB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40933== by 0x114BFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40933== by 0x1109F5: main (TestMajorAirwaysCentreLinesCleaner.cpp:18) +==40933== +==40933== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40933== at 0x822DA1C: __open_nocancel (open64_nocancel.c:39) +==40933== by 0x81B1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40933== by 0x7A2D822: ??? +==40933== by 0x7A2D96F: ??? +==40933== by 0xC0726DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40933== by 0xC072938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40933== by 0xC028922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40933== by 0xBFCD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40933== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40933== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40933== by 0x679ED38: PetscInitialize (pinit.c:924) +==40933== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40933== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40933== by 0x11675D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40933== by 0x1121F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40933== by 0x1146F0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40933== by 0x1145EB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40933== by 0x114BFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40933== by 0x1109F5: main (TestMajorAirwaysCentreLinesCleaner.cpp:18) +==40933== +==40933== Open file descriptor 115: +==40933== +==40933== +==40933== Open file descriptor 112: +==40933== +==40933== +==40933== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMajorAirwaysCentreLinesCleaner_valgrind.txt +==40933== +==40933== +==40933== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40933== +==40933== +==40933== +==40933== HEAP SUMMARY: +==40933== in use at exit: 618,318 bytes in 8,238 blocks +==40933== total heap usage: 493,348 allocs, 485,110 frees, 1,357,249,672 bytes allocated +==40933== +==40933== LEAK SUMMARY: +==40933== definitely lost: 0 bytes in 0 blocks +==40933== indirectly lost: 0 bytes in 0 blocks +==40933== possibly lost: 0 bytes in 0 blocks +==40933== still reachable: 24 bytes in 2 blocks +==40933== suppressed: 618,294 bytes in 8,236 blocks +==40933== Reachable blocks (those to which a pointer was found) are not shown. +==40933== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40933== +==40933== For lists of detected and suppressed errors, rerun with: -s +==40933== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestMaterialLaws_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMaterialLaws_valgrind.txt new file mode 100644 index 000000000..c0e7f0e72 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMaterialLaws_valgrind.txt @@ -0,0 +1,73 @@ +==25174== Memcheck, a memory error detector +==25174== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25174== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25174== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMaterialLaws -malloc_debug -malloc_dump -memory_info +==25174== Parent PID: 23903 +==25174== +==25174== +==25174== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25174== Open file descriptor 12: +==25174== at 0x4F1B07D: pipe (pipe.c:29) +==25174== by 0x106D807D: ??? +==25174== by 0xBFDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25174== by 0x88A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25174== by 0x883FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25174== by 0x71ADD38: PetscInitialize (pinit.c:924) +==25174== by 0x4A7A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25174== by 0x4A7A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25174== by 0x12ADEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25174== by 0x125E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25174== by 0x128AB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25174== by 0x128952: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25174== by 0x128FE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25174== by 0x124255: main (TestMaterialLaws.cpp:19) +==25174== +==25174== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25174== at 0x4F1FA1C: __open_nocancel (open64_nocancel.c:39) +==25174== by 0x4EA3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25174== by 0x4AB4822: ??? +==25174== by 0x4AB496F: ??? +==25174== by 0xC0856DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25174== by 0xC085938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25174== by 0xC03B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25174== by 0xBFDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25174== by 0x88A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25174== by 0x883FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25174== by 0x71ADD38: PetscInitialize (pinit.c:924) +==25174== by 0x4A7A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25174== by 0x4A7A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25174== by 0x12ADEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25174== by 0x125E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25174== by 0x128AB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25174== by 0x128952: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25174== by 0x128FE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25174== by 0x124255: main (TestMaterialLaws.cpp:19) +==25174== +==25174== Open file descriptor 115: +==25174== +==25174== +==25174== Open file descriptor 112: +==25174== +==25174== +==25174== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMaterialLaws_valgrind.txt +==25174== +==25174== +==25174== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25174== +==25174== +==25174== +==25174== HEAP SUMMARY: +==25174== in use at exit: 618,270 bytes in 8,238 blocks +==25174== total heap usage: 47,751 allocs, 39,513 frees, 1,338,428,930 bytes allocated +==25174== +==25174== LEAK SUMMARY: +==25174== definitely lost: 0 bytes in 0 blocks +==25174== indirectly lost: 0 bytes in 0 blocks +==25174== possibly lost: 0 bytes in 0 blocks +==25174== still reachable: 24 bytes in 2 blocks +==25174== suppressed: 618,246 bytes in 8,236 blocks +==25174== Reachable blocks (those to which a pointer was found) are not shown. +==25174== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25174== +==25174== For lists of detected and suppressed errors, rerun with: -s +==25174== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestMathsCustomFunctions_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMathsCustomFunctions_valgrind.txt new file mode 100644 index 000000000..2f22608a3 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMathsCustomFunctions_valgrind.txt @@ -0,0 +1,73 @@ +==24058== Memcheck, a memory error detector +==24058== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24058== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24058== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestMathsCustomFunctions -malloc_debug -malloc_dump -memory_info +==24058== Parent PID: 23903 +==24058== +==24058== +==24058== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24058== Open file descriptor 12: +==24058== at 0x4D9B07D: pipe (pipe.c:29) +==24058== by 0xAEA507D: ??? +==24058== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24058== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24058== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24058== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24058== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24058== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24058== by 0x112348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24058== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24058== by 0x110412: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24058== by 0x11030D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24058== by 0x110921: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24058== by 0x10C555: main (TestMathsCustomFunctions.cpp:18) +==24058== +==24058== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24058== at 0x4D9FA1C: __open_nocancel (open64_nocancel.c:39) +==24058== by 0x4D23BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24058== by 0x4934822: ??? +==24058== by 0x493496F: ??? +==24058== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24058== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24058== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24058== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24058== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24058== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24058== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24058== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24058== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24058== by 0x112348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24058== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24058== by 0x110412: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24058== by 0x11030D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24058== by 0x110921: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24058== by 0x10C555: main (TestMathsCustomFunctions.cpp:18) +==24058== +==24058== Open file descriptor 115: +==24058== +==24058== +==24058== Open file descriptor 112: +==24058== +==24058== +==24058== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMathsCustomFunctions_valgrind.txt +==24058== +==24058== +==24058== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24058== +==24058== +==24058== +==24058== HEAP SUMMARY: +==24058== in use at exit: 617,838 bytes in 8,238 blocks +==24058== total heap usage: 44,912 allocs, 36,674 frees, 1,338,160,156 bytes allocated +==24058== +==24058== LEAK SUMMARY: +==24058== definitely lost: 0 bytes in 0 blocks +==24058== indirectly lost: 0 bytes in 0 blocks +==24058== possibly lost: 0 bytes in 0 blocks +==24058== still reachable: 24 bytes in 2 blocks +==24058== suppressed: 617,814 bytes in 8,236 blocks +==24058== Reachable blocks (those to which a pointer was found) are not shown. +==24058== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24058== +==24058== For lists of detected and suppressed errors, rerun with: -s +==24058== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestMatrixVentilationProblem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMatrixVentilationProblem_valgrind.txt new file mode 100644 index 000000000..bfacfb861 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMatrixVentilationProblem_valgrind.txt @@ -0,0 +1,73 @@ +==40964== Memcheck, a memory error detector +==40964== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40964== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40964== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMatrixVentilationProblem -malloc_debug -malloc_dump -memory_info +==40964== Parent PID: 23903 +==40964== +==40964== +==40964== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40964== Open file descriptor 12: +==40964== at 0x81D907D: pipe (pipe.c:29) +==40964== by 0x107A407D: ??? +==40964== by 0xC01A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40964== by 0x83D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40964== by 0x836DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40964== by 0x679ED38: PetscInitialize (pinit.c:924) +==40964== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40964== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40964== by 0x117742: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40964== by 0x1128B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40964== by 0x1155E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40964== by 0x115486: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40964== by 0x115B1D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40964== by 0x110B35: main (TestMatrixVentilationProblem.cpp:19) +==40964== +==40964== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40964== at 0x81DDA1C: __open_nocancel (open64_nocancel.c:39) +==40964== by 0x8161BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40964== by 0x7A2D822: ??? +==40964== by 0x7A2D96F: ??? +==40964== by 0xC0BF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40964== by 0xC0BF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40964== by 0xC075922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40964== by 0xC01A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40964== by 0x83D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40964== by 0x836DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40964== by 0x679ED38: PetscInitialize (pinit.c:924) +==40964== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40964== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40964== by 0x117742: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40964== by 0x1128B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40964== by 0x1155E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40964== by 0x115486: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40964== by 0x115B1D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40964== by 0x110B35: main (TestMatrixVentilationProblem.cpp:19) +==40964== +==40964== Open file descriptor 115: +==40964== +==40964== +==40964== Open file descriptor 112: +==40964== +==40964== +==40964== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMatrixVentilationProblem_valgrind.txt +==40964== +==40964== +==40964== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40964== +==40964== +==40964== +==40964== HEAP SUMMARY: +==40964== in use at exit: 618,318 bytes in 8,238 blocks +==40964== total heap usage: 137,449 allocs, 129,211 frees, 1,515,201,315 bytes allocated +==40964== +==40964== LEAK SUMMARY: +==40964== definitely lost: 0 bytes in 0 blocks +==40964== indirectly lost: 0 bytes in 0 blocks +==40964== possibly lost: 0 bytes in 0 blocks +==40964== still reachable: 24 bytes in 2 blocks +==40964== suppressed: 618,294 bytes in 8,236 blocks +==40964== Reachable blocks (those to which a pointer was found) are not shown. +==40964== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40964== +==40964== For lists of detected and suppressed errors, rerun with: -s +==40964== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestMemfemMeshReader_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMemfemMeshReader_valgrind.txt new file mode 100644 index 000000000..4116be2fb --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMemfemMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24538== Memcheck, a memory error detector +==24538== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24538== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24538== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMemfemMeshReader -malloc_debug -malloc_dump -memory_info +==24538== Parent PID: 23903 +==24538== +==24538== +==24538== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24538== Open file descriptor 12: +==24538== at 0x6C5407D: pipe (pipe.c:29) +==24538== by 0x100C507D: ??? +==24538== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24538== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24538== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24538== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24538== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24538== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24538== by 0x118FB6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24538== by 0x11470D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24538== by 0x116FF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24538== by 0x116E98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24538== by 0x11752F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24538== by 0x112B35: main (TestMemfemMeshReader.cpp:19) +==24538== +==24538== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24538== at 0x6C58A1C: __open_nocancel (open64_nocancel.c:39) +==24538== by 0x6BDCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24538== by 0x658F822: ??? +==24538== by 0x658F96F: ??? +==24538== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24538== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24538== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24538== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24538== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24538== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24538== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24538== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24538== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24538== by 0x118FB6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24538== by 0x11470D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24538== by 0x116FF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24538== by 0x116E98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24538== by 0x11752F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24538== by 0x112B35: main (TestMemfemMeshReader.cpp:19) +==24538== +==24538== Open file descriptor 115: +==24538== +==24538== +==24538== Open file descriptor 112: +==24538== +==24538== +==24538== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMemfemMeshReader_valgrind.txt +==24538== +==24538== +==24538== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24538== +==24538== +==24538== +==24538== HEAP SUMMARY: +==24538== in use at exit: 618,222 bytes in 8,238 blocks +==24538== total heap usage: 87,583 allocs, 79,345 frees, 1,340,444,691 bytes allocated +==24538== +==24538== LEAK SUMMARY: +==24538== definitely lost: 0 bytes in 0 blocks +==24538== indirectly lost: 0 bytes in 0 blocks +==24538== possibly lost: 0 bytes in 0 blocks +==24538== still reachable: 24 bytes in 2 blocks +==24538== suppressed: 618,198 bytes in 8,236 blocks +==24538== Reachable blocks (those to which a pointer was found) are not shown. +==24538== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24538== +==24538== For lists of detected and suppressed errors, rerun with: -s +==24538== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt new file mode 100644 index 000000000..d9a4f87a5 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt @@ -0,0 +1,73 @@ +==25952== Memcheck, a memory error detector +==25952== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25952== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25952== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMeshBasedCellPopulationWithGhostNodes -malloc_debug -malloc_dump -memory_info +==25952== Parent PID: 23903 +==25952== +==25952== +==25952== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25952== Open file descriptor 12: +==25952== at 0x10D9707D: pipe (pipe.c:29) +==25952== by 0x196AD07D: ??? +==25952== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25952== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25952== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25952== by 0xF225D38: PetscInitialize (pinit.c:924) +==25952== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25952== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25952== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25952== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25952== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25952== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25952== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25952== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) +==25952== +==25952== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25952== at 0x10D9BA1C: __open_nocancel (open64_nocancel.c:39) +==25952== by 0x10D1FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25952== by 0x104B4822: ??? +==25952== by 0x104B496F: ??? +==25952== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25952== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25952== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25952== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25952== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25952== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25952== by 0xF225D38: PetscInitialize (pinit.c:924) +==25952== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25952== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25952== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25952== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25952== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25952== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25952== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25952== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) +==25952== +==25952== Open file descriptor 115: +==25952== +==25952== +==25952== Open file descriptor 112: +==25952== +==25952== +==25952== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt +==25952== +==25952== +==25952== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25952== +==25952== +==25952== +==25952== HEAP SUMMARY: +==25952== in use at exit: 618,350 bytes in 8,239 blocks +==25952== total heap usage: 221,710 allocs, 213,471 frees, 1,363,645,475 bytes allocated +==25952== +==25952== LEAK SUMMARY: +==25952== definitely lost: 0 bytes in 0 blocks +==25952== indirectly lost: 0 bytes in 0 blocks +==25952== possibly lost: 0 bytes in 0 blocks +==25952== still reachable: 56 bytes in 3 blocks +==25952== suppressed: 618,294 bytes in 8,236 blocks +==25952== Reachable blocks (those to which a pointer was found) are not shown. +==25952== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25952== +==25952== For lists of detected and suppressed errors, rerun with: -s +==25952== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestMeshBasedCellPopulation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMeshBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..8a34972bf --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMeshBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==25951== Memcheck, a memory error detector +==25951== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25951== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25951== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==25951== Parent PID: 23903 +==25951== +==25951== +==25951== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25951== Open file descriptor 12: +==25951== at 0xF92407D: pipe (pipe.c:29) +==25951== by 0x196AD07D: ??? +==25951== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25951== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25951== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25951== by 0x10210D38: PetscInitialize (pinit.c:924) +==25951== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25951== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25951== by 0x2EFB7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25951== by 0x2E6539: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25951== by 0x2EAE3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25951== by 0x2EACDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25951== by 0x2EB375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25951== by 0x2E4955: main (TestMeshBasedCellPopulation.cpp:19) +==25951== +==25951== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25951== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==25951== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25951== by 0xF136822: ??? +==25951== by 0xF13696F: ??? +==25951== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25951== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25951== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25951== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25951== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25951== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25951== by 0x10210D38: PetscInitialize (pinit.c:924) +==25951== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25951== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25951== by 0x2EFB7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25951== by 0x2E6539: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25951== by 0x2EAE3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25951== by 0x2EACDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25951== by 0x2EB375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25951== by 0x2E4955: main (TestMeshBasedCellPopulation.cpp:19) +==25951== +==25951== Open file descriptor 115: +==25951== +==25951== +==25951== Open file descriptor 112: +==25951== +==25951== +==25951== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshBasedCellPopulation_valgrind.txt +==25951== +==25951== +==25951== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25951== +==25951== +==25951== +==25951== HEAP SUMMARY: +==25951== in use at exit: 618,350 bytes in 8,239 blocks +==25951== total heap usage: 145,277 allocs, 137,038 frees, 1,366,614,466 bytes allocated +==25951== +==25951== LEAK SUMMARY: +==25951== definitely lost: 0 bytes in 0 blocks +==25951== indirectly lost: 0 bytes in 0 blocks +==25951== possibly lost: 0 bytes in 0 blocks +==25951== still reachable: 56 bytes in 3 blocks +==25951== suppressed: 618,294 bytes in 8,236 blocks +==25951== Reachable blocks (those to which a pointer was found) are not shown. +==25951== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25951== +==25951== For lists of detected and suppressed errors, rerun with: -s +==25951== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestMeshUtilityFunctions_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMeshUtilityFunctions_valgrind.txt new file mode 100644 index 000000000..049357b1b --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMeshUtilityFunctions_valgrind.txt @@ -0,0 +1,73 @@ +==24577== Memcheck, a memory error detector +==24577== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24577== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24577== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMeshUtilityFunctions -malloc_debug -malloc_dump -memory_info +==24577== Parent PID: 23903 +==24577== +==24577== +==24577== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24577== Open file descriptor 12: +==24577== at 0x699E07D: pipe (pipe.c:29) +==24577== by 0x100C307D: ??? +==24577== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24577== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24577== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24577== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24577== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24577== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24577== by 0x11E530: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24577== by 0x119E33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24577== by 0x11C2F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24577== by 0x11C1F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24577== by 0x11C805: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24577== by 0x118635: main (TestMeshUtilityFunctions.cpp:18) +==24577== +==24577== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24577== at 0x69A2A1C: __open_nocancel (open64_nocancel.c:39) +==24577== by 0x6926BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24577== by 0x661E822: ??? +==24577== by 0x661E96F: ??? +==24577== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24577== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24577== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24577== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24577== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24577== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24577== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24577== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24577== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24577== by 0x11E530: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24577== by 0x119E33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24577== by 0x11C2F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24577== by 0x11C1F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24577== by 0x11C805: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24577== by 0x118635: main (TestMeshUtilityFunctions.cpp:18) +==24577== +==24577== Open file descriptor 115: +==24577== +==24577== +==24577== Open file descriptor 112: +==24577== +==24577== +==24577== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshUtilityFunctions_valgrind.txt +==24577== +==24577== +==24577== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24577== +==24577== +==24577== +==24577== HEAP SUMMARY: +==24577== in use at exit: 620,774 bytes in 8,239 blocks +==24577== total heap usage: 47,348 allocs, 39,109 frees, 1,338,386,908 bytes allocated +==24577== +==24577== LEAK SUMMARY: +==24577== definitely lost: 0 bytes in 0 blocks +==24577== indirectly lost: 0 bytes in 0 blocks +==24577== possibly lost: 0 bytes in 0 blocks +==24577== still reachable: 2,576 bytes in 3 blocks +==24577== suppressed: 618,198 bytes in 8,236 blocks +==24577== Reachable blocks (those to which a pointer was found) are not shown. +==24577== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24577== +==24577== For lists of detected and suppressed errors, rerun with: -s +==24577== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestMeshWriters_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMeshWriters_valgrind.txt new file mode 100644 index 000000000..8b468b936 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMeshWriters_valgrind.txt @@ -0,0 +1,73 @@ +==24708== Memcheck, a memory error detector +==24708== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24708== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24708== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMeshWriters -malloc_debug -malloc_dump -memory_info +==24708== Parent PID: 23903 +==24708== +==24708== +==24708== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24708== Open file descriptor 12: +==24708== at 0x81F007D: pipe (pipe.c:29) +==24708== by 0x100C307D: ??? +==24708== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24708== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24708== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24708== by 0x667ED38: PetscInitialize (pinit.c:924) +==24708== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24708== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24708== by 0x1482F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24708== by 0x140E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24708== by 0x143F06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24708== by 0x143DA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24708== by 0x14443D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24708== by 0x13F235: main (TestMeshWriters.cpp:19) +==24708== +==24708== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24708== at 0x81F4A1C: __open_nocancel (open64_nocancel.c:39) +==24708== by 0x8178BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24708== by 0x790D822: ??? +==24708== by 0x790D96F: ??? +==24708== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24708== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24708== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24708== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24708== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24708== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24708== by 0x667ED38: PetscInitialize (pinit.c:924) +==24708== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24708== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24708== by 0x1482F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24708== by 0x140E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24708== by 0x143F06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24708== by 0x143DA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24708== by 0x14443D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24708== by 0x13F235: main (TestMeshWriters.cpp:19) +==24708== +==24708== Open file descriptor 115: +==24708== +==24708== +==24708== Open file descriptor 112: +==24708== +==24708== +==24708== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshWriters_valgrind.txt +==24708== +==24708== +==24708== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24708== +==24708== +==24708== +==24708== HEAP SUMMARY: +==24708== in use at exit: 618,222 bytes in 8,238 blocks +==24708== total heap usage: 187,275 allocs, 179,037 frees, 1,352,174,552 bytes allocated +==24708== +==24708== LEAK SUMMARY: +==24708== definitely lost: 0 bytes in 0 blocks +==24708== indirectly lost: 0 bytes in 0 blocks +==24708== possibly lost: 0 bytes in 0 blocks +==24708== still reachable: 24 bytes in 2 blocks +==24708== suppressed: 618,198 bytes in 8,236 blocks +==24708== Reachable blocks (those to which a pointer was found) are not shown. +==24708== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24708== +==24708== For lists of detected and suppressed errors, rerun with: -s +==24708== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestMirams2010WntOdeSystem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMirams2010WntOdeSystem_valgrind.txt new file mode 100644 index 000000000..ad262fb0c --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMirams2010WntOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==40223== Memcheck, a memory error detector +==40223== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40223== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40223== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestMirams2010WntOdeSystem -malloc_debug -malloc_dump -memory_info +==40223== Parent PID: 23903 +==40223== +==40223== +==40223== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40223== Open file descriptor 12: +==40223== at 0xF39D07D: pipe (pipe.c:29) +==40223== by 0x1B36D07D: ??? +==40223== by 0x165814CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40223== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40223== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40223== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40223== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40223== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40223== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40223== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40223== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40223== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40223== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40223== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) +==40223== +==40223== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40223== at 0xF3A1A1C: __open_nocancel (open64_nocancel.c:39) +==40223== by 0xF325BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40223== by 0xEFDD822: ??? +==40223== by 0xEFDD96F: ??? +==40223== by 0x166266DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40223== by 0x16626938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40223== by 0x165DC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40223== by 0x165812DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40223== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40223== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40223== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40223== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40223== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40223== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40223== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40223== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40223== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40223== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40223== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) +==40223== +==40223== Open file descriptor 115: +==40223== +==40223== +==40223== Open file descriptor 112: +==40223== +==40223== +==40223== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMirams2010WntOdeSystem_valgrind.txt +==40223== +==40223== +==40223== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40223== +==40223== +==40223== +==40223== HEAP SUMMARY: +==40223== in use at exit: 618,366 bytes in 8,239 blocks +==40223== total heap usage: 66,832 allocs, 58,593 frees, 1,340,372,956 bytes allocated +==40223== +==40223== LEAK SUMMARY: +==40223== definitely lost: 0 bytes in 0 blocks +==40223== indirectly lost: 0 bytes in 0 blocks +==40223== possibly lost: 0 bytes in 0 blocks +==40223== still reachable: 56 bytes in 3 blocks +==40223== suppressed: 618,310 bytes in 8,236 blocks +==40223== Reachable blocks (those to which a pointer was found) are not shown. +==40223== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40223== +==40223== For lists of detected and suppressed errors, rerun with: -s +==40223== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestMixedDimensionMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMixedDimensionMesh_valgrind.txt new file mode 100644 index 000000000..91971e73c --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMixedDimensionMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24320== Memcheck, a memory error detector +==24320== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24320== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24320== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMixedDimensionMesh -malloc_debug -malloc_dump -memory_info +==24320== Parent PID: 23903 +==24320== +==24320== +==24320== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24320== Open file descriptor 12: +==24320== at 0x814B07D: pipe (pipe.c:29) +==24320== by 0x100C507D: ??? +==24320== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24320== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24320== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24320== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24320== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24320== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24320== by 0x125042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24320== by 0x11E27D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24320== by 0x121016: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24320== by 0x120EB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24320== by 0x12154D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24320== by 0x11C6A5: main (TestMixedDimensionMesh.cpp:19) +==24320== +==24320== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24320== at 0x814FA1C: __open_nocancel (open64_nocancel.c:39) +==24320== by 0x80D3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24320== by 0x658F822: ??? +==24320== by 0x658F96F: ??? +==24320== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24320== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24320== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24320== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24320== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24320== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24320== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24320== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24320== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24320== by 0x125042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24320== by 0x11E27D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24320== by 0x121016: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24320== by 0x120EB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24320== by 0x12154D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24320== by 0x11C6A5: main (TestMixedDimensionMesh.cpp:19) +==24320== +==24320== Open file descriptor 115: +==24320== +==24320== +==24320== Open file descriptor 112: +==24320== +==24320== +==24320== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMixedDimensionMesh_valgrind.txt +==24320== +==24320== +==24320== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24320== +==24320== +==24320== +==24320== HEAP SUMMARY: +==24320== in use at exit: 618,222 bytes in 8,238 blocks +==24320== total heap usage: 121,799 allocs, 113,561 frees, 1,343,655,292 bytes allocated +==24320== +==24320== LEAK SUMMARY: +==24320== definitely lost: 0 bytes in 0 blocks +==24320== indirectly lost: 0 bytes in 0 blocks +==24320== possibly lost: 0 bytes in 0 blocks +==24320== still reachable: 24 bytes in 2 blocks +==24320== suppressed: 618,198 bytes in 8,236 blocks +==24320== Reachable blocks (those to which a pointer was found) are not shown. +==24320== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24320== +==24320== For lists of detected and suppressed errors, rerun with: -s +==24320== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestMockEulerIvpOdeSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMockEulerIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..71d55de30 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMockEulerIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24870== Memcheck, a memory error detector +==24870== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24870== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24870== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestMockEulerIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24870== Parent PID: 23903 +==24870== +==24870== +==24870== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24870== Open file descriptor 12: +==24870== at 0x4F5207D: pipe (pipe.c:29) +==24870== by 0xB1E607D: ??? +==24870== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24870== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24870== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24870== by 0x5308D38: PetscInitialize (pinit.c:924) +==24870== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24870== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24870== by 0x123542: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24870== by 0x11E7E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24870== by 0x120D60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24870== by 0x120C5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24870== by 0x12126F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24870== by 0x11CE65: main (TestMockEulerIvpOdeSolver.cpp:18) +==24870== +==24870== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24870== at 0x4F56A1C: __open_nocancel (open64_nocancel.c:39) +==24870== by 0x4EDABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24870== by 0x4B76822: ??? +==24870== by 0x4B7696F: ??? +==24870== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24870== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24870== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24870== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24870== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24870== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24870== by 0x5308D38: PetscInitialize (pinit.c:924) +==24870== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24870== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24870== by 0x123542: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24870== by 0x11E7E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24870== by 0x120D60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24870== by 0x120C5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24870== by 0x12126F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24870== by 0x11CE65: main (TestMockEulerIvpOdeSolver.cpp:18) +==24870== +==24870== Open file descriptor 115: +==24870== +==24870== +==24870== Open file descriptor 112: +==24870== +==24870== +==24870== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMockEulerIvpOdeSolver_valgrind.txt +==24870== +==24870== +==24870== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24870== +==24870== +==24870== +==24870== HEAP SUMMARY: +==24870== in use at exit: 617,902 bytes in 8,238 blocks +==24870== total heap usage: 45,128 allocs, 36,890 frees, 1,338,195,075 bytes allocated +==24870== +==24870== LEAK SUMMARY: +==24870== definitely lost: 0 bytes in 0 blocks +==24870== indirectly lost: 0 bytes in 0 blocks +==24870== possibly lost: 0 bytes in 0 blocks +==24870== still reachable: 24 bytes in 2 blocks +==24870== suppressed: 617,878 bytes in 8,236 blocks +==24870== Reachable blocks (those to which a pointer was found) are not shown. +==24870== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24870== +==24870== For lists of detected and suppressed errors, rerun with: -s +==24870== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestModernCppFeatures_valgrind.txt b/log-files/2024-09-07_08-54-51/TestModernCppFeatures_valgrind.txt new file mode 100644 index 000000000..faf9fe726 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestModernCppFeatures_valgrind.txt @@ -0,0 +1,73 @@ +==23935== Memcheck, a memory error detector +==23935== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23935== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23935== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestModernCppFeatures -malloc_debug -malloc_dump -memory_info +==23935== Parent PID: 23903 +==23935== +==23935== +==23935== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23935== Open file descriptor 12: +==23935== at 0x616907D: pipe (pipe.c:29) +==23935== by 0xAEA507D: ??? +==23935== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23935== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23935== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23935== by 0x4A23D38: PetscInitialize (pinit.c:924) +==23935== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23935== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23935== by 0x115753: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23935== by 0x111013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23935== by 0x1137AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23935== by 0x1136AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23935== by 0x113CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23935== by 0x10F815: main (TestModernCppFeatures.cpp:18) +==23935== +==23935== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23935== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==23935== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23935== by 0x5CB2822: ??? +==23935== by 0x5CB296F: ??? +==23935== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23935== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23935== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23935== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23935== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23935== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23935== by 0x4A23D38: PetscInitialize (pinit.c:924) +==23935== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23935== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23935== by 0x115753: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23935== by 0x111013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23935== by 0x1137AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23935== by 0x1136AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23935== by 0x113CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23935== by 0x10F815: main (TestModernCppFeatures.cpp:18) +==23935== +==23935== Open file descriptor 115: +==23935== +==23935== +==23935== Open file descriptor 112: +==23935== +==23935== +==23935== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestModernCppFeatures_valgrind.txt +==23935== +==23935== +==23935== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23935== +==23935== +==23935== +==23935== HEAP SUMMARY: +==23935== in use at exit: 617,838 bytes in 8,238 blocks +==23935== total heap usage: 44,920 allocs, 36,682 frees, 1,338,161,454 bytes allocated +==23935== +==23935== LEAK SUMMARY: +==23935== definitely lost: 0 bytes in 0 blocks +==23935== indirectly lost: 0 bytes in 0 blocks +==23935== possibly lost: 0 bytes in 0 blocks +==23935== still reachable: 24 bytes in 2 blocks +==23935== suppressed: 617,814 bytes in 8,236 blocks +==23935== Reachable blocks (those to which a pointer was found) are not shown. +==23935== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23935== +==23935== For lists of detected and suppressed errors, rerun with: -s +==23935== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestModifiers_valgrind.txt b/log-files/2024-09-07_08-54-51/TestModifiers_valgrind.txt new file mode 100644 index 000000000..bc6c75fbe --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestModifiers_valgrind.txt @@ -0,0 +1,73 @@ +==42428== Memcheck, a memory error detector +==42428== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42428== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42428== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestModifiers -malloc_debug -malloc_dump -memory_info +==42428== Parent PID: 23903 +==42428== +==42428== +==42428== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42428== Open file descriptor 12: +==42428== at 0x88D907D: pipe (pipe.c:29) +==42428== by 0x1432407D: ??? +==42428== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42428== by 0x9FD2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42428== by 0x9F6BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42428== by 0x8C62D38: PetscInitialize (pinit.c:924) +==42428== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42428== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42428== by 0x124F74: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==42428== by 0x11FB1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42428== by 0x12265E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42428== by 0x1224FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42428== by 0x122B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42428== by 0x11DF45: main (TestModifiers.cpp:19) +==42428== +==42428== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42428== at 0x88DDA1C: __open_nocancel (open64_nocancel.c:39) +==42428== by 0x8861BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42428== by 0x8416822: ??? +==42428== by 0x841696F: ??? +==42428== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42428== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42428== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42428== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42428== by 0x9FD2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42428== by 0x9F6BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42428== by 0x8C62D38: PetscInitialize (pinit.c:924) +==42428== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42428== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42428== by 0x124F74: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==42428== by 0x11FB1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42428== by 0x12265E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42428== by 0x1224FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42428== by 0x122B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42428== by 0x11DF45: main (TestModifiers.cpp:19) +==42428== +==42428== Open file descriptor 115: +==42428== +==42428== +==42428== Open file descriptor 112: +==42428== +==42428== +==42428== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestModifiers_valgrind.txt +==42428== +==42428== +==42428== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42428== +==42428== +==42428== +==42428== HEAP SUMMARY: +==42428== in use at exit: 620,177 bytes in 8,242 blocks +==42428== total heap usage: 50,665 allocs, 42,423 frees, 1,339,475,370 bytes allocated +==42428== +==42428== LEAK SUMMARY: +==42428== definitely lost: 0 bytes in 0 blocks +==42428== indirectly lost: 0 bytes in 0 blocks +==42428== possibly lost: 0 bytes in 0 blocks +==42428== still reachable: 1,867 bytes in 6 blocks +==42428== suppressed: 618,310 bytes in 8,236 blocks +==42428== Reachable blocks (those to which a pointer was found) are not shown. +==42428== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42428== +==42428== For lists of detected and suppressed errors, rerun with: -s +==42428== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestMonodomainConductionVelocity_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMonodomainConductionVelocity_valgrind.txt new file mode 100644 index 000000000..fc6533e53 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMonodomainConductionVelocity_valgrind.txt @@ -0,0 +1,73 @@ +==43114== Memcheck, a memory error detector +==43114== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43114== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43114== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainConductionVelocity -malloc_debug -malloc_dump -memory_info +==43114== Parent PID: 23903 +==43114== +==43114== +==43114== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43114== Open file descriptor 12: +==43114== at 0xA85207D: pipe (pipe.c:29) +==43114== by 0x1432407D: ??? +==43114== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43114== by 0xBF4D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43114== by 0xBEE6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43114== by 0xABDBD38: PetscInitialize (pinit.c:924) +==43114== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43114== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43114== by 0x126B4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43114== by 0x121E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43114== by 0x1248CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43114== by 0x12476C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43114== by 0x124E03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43114== by 0x120235: main (TestMonodomainConductionVelocity.cpp:19) +==43114== +==43114== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43114== at 0xA856A1C: __open_nocancel (open64_nocancel.c:39) +==43114== by 0xA7DABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43114== by 0xA173822: ??? +==43114== by 0xA17396F: ??? +==43114== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43114== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43114== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43114== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43114== by 0xBF4D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43114== by 0xBEE6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43114== by 0xABDBD38: PetscInitialize (pinit.c:924) +==43114== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43114== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43114== by 0x126B4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43114== by 0x121E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43114== by 0x1248CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43114== by 0x12476C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43114== by 0x124E03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43114== by 0x120235: main (TestMonodomainConductionVelocity.cpp:19) +==43114== +==43114== Open file descriptor 115: +==43114== +==43114== +==43114== Open file descriptor 112: +==43114== +==43114== +==43114== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainConductionVelocity_valgrind.txt +==43114== +==43114== +==43114== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43114== +==43114== +==43114== +==43114== HEAP SUMMARY: +==43114== in use at exit: 618,814 bytes in 8,248 blocks +==43114== total heap usage: 385,467 allocs, 377,219 frees, 1,419,222,918 bytes allocated +==43114== +==43114== LEAK SUMMARY: +==43114== definitely lost: 0 bytes in 0 blocks +==43114== indirectly lost: 0 bytes in 0 blocks +==43114== possibly lost: 0 bytes in 0 blocks +==43114== still reachable: 24 bytes in 2 blocks +==43114== suppressed: 618,790 bytes in 8,246 blocks +==43114== Reachable blocks (those to which a pointer was found) are not shown. +==43114== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43114== +==43114== For lists of detected and suppressed errors, rerun with: -s +==43114== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestMonodomainFitzHughNagumo_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMonodomainFitzHughNagumo_valgrind.txt new file mode 100644 index 000000000..7c1bd6eed --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMonodomainFitzHughNagumo_valgrind.txt @@ -0,0 +1,73 @@ +==43222== Memcheck, a memory error detector +==43222== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43222== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43222== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainFitzHughNagumo -malloc_debug -malloc_dump -memory_info +==43222== Parent PID: 23903 +==43222== +==43222== +==43222== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43222== Open file descriptor 12: +==43222== at 0xA7DF07D: pipe (pipe.c:29) +==43222== by 0x1432407D: ??? +==43222== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43222== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43222== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43222== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43222== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43222== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43222== by 0x1211B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43222== by 0x11C2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43222== by 0x11E6C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43222== by 0x11E5BE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43222== by 0x11EBD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43222== by 0x11AAB5: main (TestMonodomainFitzHughNagumo.cpp:18) +==43222== +==43222== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43222== at 0xA7E3A1C: __open_nocancel (open64_nocancel.c:39) +==43222== by 0xA767BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43222== by 0xA100822: ??? +==43222== by 0xA10096F: ??? +==43222== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43222== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43222== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43222== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43222== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43222== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43222== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43222== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43222== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43222== by 0x1211B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43222== by 0x11C2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43222== by 0x11E6C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43222== by 0x11E5BE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43222== by 0x11EBD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43222== by 0x11AAB5: main (TestMonodomainFitzHughNagumo.cpp:18) +==43222== +==43222== Open file descriptor 115: +==43222== +==43222== +==43222== Open file descriptor 112: +==43222== +==43222== +==43222== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainFitzHughNagumo_valgrind.txt +==43222== +==43222== +==43222== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43222== +==43222== +==43222== +==43222== HEAP SUMMARY: +==43222== in use at exit: 618,814 bytes in 8,248 blocks +==43222== total heap usage: 80,869 allocs, 72,621 frees, 1,344,239,296 bytes allocated +==43222== +==43222== LEAK SUMMARY: +==43222== definitely lost: 0 bytes in 0 blocks +==43222== indirectly lost: 0 bytes in 0 blocks +==43222== possibly lost: 0 bytes in 0 blocks +==43222== still reachable: 24 bytes in 2 blocks +==43222== suppressed: 618,790 bytes in 8,246 blocks +==43222== Reachable blocks (those to which a pointer was found) are not shown. +==43222== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43222== +==43222== For lists of detected and suppressed errors, rerun with: -s +==43222== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 38) diff --git a/log-files/2024-09-07_08-54-51/TestMonodomainMassLumping_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMonodomainMassLumping_valgrind.txt new file mode 100644 index 000000000..b1d9ae2e5 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMonodomainMassLumping_valgrind.txt @@ -0,0 +1,73 @@ +==43233== Memcheck, a memory error detector +==43233== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43233== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43233== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainMassLumping -malloc_debug -malloc_dump -memory_info +==43233== Parent PID: 23903 +==43233== +==43233== +==43233== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43233== Open file descriptor 12: +==43233== at 0xA88707D: pipe (pipe.c:29) +==43233== by 0x1432407D: ??? +==43233== by 0xD5A94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43233== by 0xA175418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43233== by 0xA10ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43233== by 0xAC10D38: PetscInitialize (pinit.c:924) +==43233== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43233== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43233== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43233== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43233== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43233== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43233== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43233== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) +==43233== +==43233== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43233== at 0xA88BA1C: __open_nocancel (open64_nocancel.c:39) +==43233== by 0xA80FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43233== by 0xA071822: ??? +==43233== by 0xA07196F: ??? +==43233== by 0xD64E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43233== by 0xD64E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43233== by 0xD604922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43233== by 0xD5A92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43233== by 0xA175418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43233== by 0xA10ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43233== by 0xAC10D38: PetscInitialize (pinit.c:924) +==43233== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43233== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43233== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43233== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43233== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43233== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43233== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43233== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) +==43233== +==43233== Open file descriptor 115: +==43233== +==43233== +==43233== Open file descriptor 112: +==43233== +==43233== +==43233== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainMassLumping_valgrind.txt +==43233== +==43233== +==43233== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43233== +==43233== +==43233== +==43233== HEAP SUMMARY: +==43233== in use at exit: 618,743 bytes in 8,244 blocks +==43233== total heap usage: 406,621 allocs, 398,377 frees, 1,539,925,835 bytes allocated +==43233== +==43233== LEAK SUMMARY: +==43233== definitely lost: 0 bytes in 0 blocks +==43233== indirectly lost: 0 bytes in 0 blocks +==43233== possibly lost: 0 bytes in 0 blocks +==43233== still reachable: 24 bytes in 2 blocks +==43233== suppressed: 618,719 bytes in 8,242 blocks +==43233== Reachable blocks (those to which a pointer was found) are not shown. +==43233== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43233== +==43233== For lists of detected and suppressed errors, rerun with: -s +==43233== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 45 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestMonodomainProblem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMonodomainProblem_valgrind.txt new file mode 100644 index 000000000..be3b23b62 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMonodomainProblem_valgrind.txt @@ -0,0 +1,74 @@ +==43128== Memcheck, a memory error detector +==43128== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43128== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43128== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info +==43128== Parent PID: 23903 +==43128== +==43128== Warning: invalid file descriptor -1 in syscall close() +==43128== +==43128== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43128== Open file descriptor 12: +==43128== at 0xC10007D: pipe (pipe.c:29) +==43128== by 0x1432407D: ??? +==43128== by 0xFFEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43128== by 0xB9EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43128== by 0xB987D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43128== by 0xA2C9D38: PetscInitialize (pinit.c:924) +==43128== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43128== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43128== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43128== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43128== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43128== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43128== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43128== by 0x13FC05: main (TestMonodomainProblem.cpp:19) +==43128== +==43128== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43128== at 0xC104A1C: __open_nocancel (open64_nocancel.c:39) +==43128== by 0xC088BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43128== by 0xA173822: ??? +==43128== by 0xA17396F: ??? +==43128== by 0x100916DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43128== by 0x10091938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43128== by 0x10047922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43128== by 0xFFEA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43128== by 0xB9EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43128== by 0xB987D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43128== by 0xA2C9D38: PetscInitialize (pinit.c:924) +==43128== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43128== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43128== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43128== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43128== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43128== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43128== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43128== by 0x13FC05: main (TestMonodomainProblem.cpp:19) +==43128== +==43128== Open file descriptor 115: +==43128== +==43128== +==43128== Open file descriptor 112: +==43128== +==43128== +==43128== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt +==43128== +==43128== +==43128== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43128== +==43128== +==43128== +==43128== HEAP SUMMARY: +==43128== in use at exit: 618,743 bytes in 8,244 blocks +==43128== total heap usage: 6,613,794 allocs, 6,605,550 frees, 4,016,614,141 bytes allocated +==43128== +==43128== LEAK SUMMARY: +==43128== definitely lost: 0 bytes in 0 blocks +==43128== indirectly lost: 0 bytes in 0 blocks +==43128== possibly lost: 0 bytes in 0 blocks +==43128== still reachable: 24 bytes in 2 blocks +==43128== suppressed: 618,719 bytes in 8,242 blocks +==43128== Reachable blocks (those to which a pointer was found) are not shown. +==43128== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43128== +==43128== For lists of detected and suppressed errors, rerun with: -s +==43128== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt new file mode 100644 index 000000000..4698446f3 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43135== Memcheck, a memory error detector +==43135== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43135== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43135== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainPurkinjeAssemblersAndSolver -malloc_debug -malloc_dump -memory_info +==43135== Parent PID: 23903 +==43135== +==43135== +==43135== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43135== Open file descriptor 12: +==43135== at 0xC05407D: pipe (pipe.c:29) +==43135== by 0x1432407D: ??? +==43135== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43135== by 0xC3D1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43135== by 0xC36AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43135== by 0xA601D38: PetscInitialize (pinit.c:924) +==43135== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43135== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43135== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43135== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43135== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43135== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43135== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43135== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) +==43135== +==43135== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43135== at 0xC058A1C: __open_nocancel (open64_nocancel.c:39) +==43135== by 0xBFDCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43135== by 0xB890822: ??? +==43135== by 0xB89096F: ??? +==43135== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43135== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43135== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43135== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43135== by 0xC3D1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43135== by 0xC36AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43135== by 0xA601D38: PetscInitialize (pinit.c:924) +==43135== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43135== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43135== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43135== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43135== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43135== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43135== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43135== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) +==43135== +==43135== Open file descriptor 115: +==43135== +==43135== +==43135== Open file descriptor 112: +==43135== +==43135== +==43135== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt +==43135== +==43135== +==43135== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43135== +==43135== +==43135== +==43135== HEAP SUMMARY: +==43135== in use at exit: 618,814 bytes in 8,248 blocks +==43135== total heap usage: 83,438 allocs, 75,190 frees, 1,344,976,009 bytes allocated +==43135== +==43135== LEAK SUMMARY: +==43135== definitely lost: 0 bytes in 0 blocks +==43135== indirectly lost: 0 bytes in 0 blocks +==43135== possibly lost: 0 bytes in 0 blocks +==43135== still reachable: 24 bytes in 2 blocks +==43135== suppressed: 618,790 bytes in 8,246 blocks +==43135== Reachable blocks (those to which a pointer was found) are not shown. +==43135== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43135== +==43135== For lists of detected and suppressed errors, rerun with: -s +==43135== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 38) diff --git a/log-files/2024-09-07_08-54-51/TestMonodomainPurkinjeProblem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMonodomainPurkinjeProblem_valgrind.txt new file mode 100644 index 000000000..536455982 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMonodomainPurkinjeProblem_valgrind.txt @@ -0,0 +1,73 @@ +==43206== Memcheck, a memory error detector +==43206== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43206== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43206== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainPurkinjeProblem -malloc_debug -malloc_dump -memory_info +==43206== Parent PID: 23903 +==43206== +==43206== +==43206== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43206== Open file descriptor 12: +==43206== at 0xA75007D: pipe (pipe.c:29) +==43206== by 0x1432407D: ??? +==43206== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43206== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43206== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43206== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43206== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43206== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43206== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43206== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43206== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43206== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43206== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43206== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) +==43206== +==43206== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43206== at 0xA754A1C: __open_nocancel (open64_nocancel.c:39) +==43206== by 0xA6D8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43206== by 0xA071822: ??? +==43206== by 0xA07196F: ??? +==43206== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43206== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43206== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43206== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43206== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43206== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43206== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43206== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43206== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43206== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43206== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43206== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43206== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43206== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43206== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) +==43206== +==43206== Open file descriptor 115: +==43206== +==43206== +==43206== Open file descriptor 112: +==43206== +==43206== +==43206== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainPurkinjeProblem_valgrind.txt +==43206== +==43206== +==43206== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43206== +==43206== +==43206== +==43206== HEAP SUMMARY: +==43206== in use at exit: 618,743 bytes in 8,244 blocks +==43206== total heap usage: 1,149,685 allocs, 1,141,441 frees, 2,579,749,270 bytes allocated +==43206== +==43206== LEAK SUMMARY: +==43206== definitely lost: 0 bytes in 0 blocks +==43206== indirectly lost: 0 bytes in 0 blocks +==43206== possibly lost: 0 bytes in 0 blocks +==43206== still reachable: 24 bytes in 2 blocks +==43206== suppressed: 618,719 bytes in 8,242 blocks +==43206== Reachable blocks (those to which a pointer was found) are not shown. +==43206== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43206== +==43206== For lists of detected and suppressed errors, rerun with: -s +==43206== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 66 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestMonodomainStiffnessMatrixAssembler_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMonodomainStiffnessMatrixAssembler_valgrind.txt new file mode 100644 index 000000000..16fc745b3 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMonodomainStiffnessMatrixAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==43113== Memcheck, a memory error detector +==43113== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43113== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43113== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainStiffnessMatrixAssembler -malloc_debug -malloc_dump -memory_info +==43113== Parent PID: 23903 +==43113== +==43113== +==43113== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43113== Open file descriptor 12: +==43113== at 0xBFE107D: pipe (pipe.c:29) +==43113== by 0x1432407D: ??? +==43113== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43113== by 0xC35E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43113== by 0xC2F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43113== by 0xA58CD38: PetscInitialize (pinit.c:924) +==43113== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43113== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43113== by 0x13BAD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43113== by 0x136853: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43113== by 0x1393FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43113== by 0x1392F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43113== by 0x139909: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43113== by 0x135055: main (TestMonodomainStiffnessMatrixAssembler.cpp:18) +==43113== +==43113== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43113== at 0xBFE5A1C: __open_nocancel (open64_nocancel.c:39) +==43113== by 0xBF69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43113== by 0xB81B822: ??? +==43113== by 0xB81B96F: ??? +==43113== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43113== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43113== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43113== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43113== by 0xC35E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43113== by 0xC2F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43113== by 0xA58CD38: PetscInitialize (pinit.c:924) +==43113== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43113== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43113== by 0x13BAD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43113== by 0x136853: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43113== by 0x1393FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43113== by 0x1392F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43113== by 0x139909: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43113== by 0x135055: main (TestMonodomainStiffnessMatrixAssembler.cpp:18) +==43113== +==43113== Open file descriptor 115: +==43113== +==43113== +==43113== Open file descriptor 112: +==43113== +==43113== +==43113== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainStiffnessMatrixAssembler_valgrind.txt +==43113== +==43113== +==43113== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43113== +==43113== +==43113== +==43113== HEAP SUMMARY: +==43113== in use at exit: 618,334 bytes in 8,238 blocks +==43113== total heap usage: 49,644 allocs, 41,406 frees, 1,338,639,905 bytes allocated +==43113== +==43113== LEAK SUMMARY: +==43113== definitely lost: 0 bytes in 0 blocks +==43113== indirectly lost: 0 bytes in 0 blocks +==43113== possibly lost: 0 bytes in 0 blocks +==43113== still reachable: 24 bytes in 2 blocks +==43113== suppressed: 618,310 bytes in 8,236 blocks +==43113== Reachable blocks (those to which a pointer was found) are not shown. +==43113== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43113== +==43113== For lists of detected and suppressed errors, rerun with: -s +==43113== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestMonodomainTissue_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMonodomainTissue_valgrind.txt new file mode 100644 index 000000000..b728e6445 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMonodomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==43236== Memcheck, a memory error detector +==43236== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43236== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43236== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainTissue -malloc_debug -malloc_dump -memory_info +==43236== Parent PID: 23903 +==43236== +==43236== +==43236== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43236== Open file descriptor 12: +==43236== at 0xBB1007D: pipe (pipe.c:29) +==43236== by 0x1432407D: ??? +==43236== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43236== by 0xBE8B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43236== by 0xBE24D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43236== by 0xA1C5D38: PetscInitialize (pinit.c:924) +==43236== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43236== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43236== by 0x1294CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43236== by 0x1242BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43236== by 0x126FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43236== by 0x126E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43236== by 0x1274D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43236== by 0x1226E5: main (TestMonodomainTissue.cpp:19) +==43236== +==43236== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43236== at 0xBB14A1C: __open_nocancel (open64_nocancel.c:39) +==43236== by 0xBA98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43236== by 0xA071822: ??? +==43236== by 0xA07196F: ??? +==43236== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43236== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43236== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43236== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43236== by 0xBE8B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43236== by 0xBE24D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43236== by 0xA1C5D38: PetscInitialize (pinit.c:924) +==43236== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43236== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43236== by 0x1294CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43236== by 0x1242BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43236== by 0x126FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43236== by 0x126E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43236== by 0x1274D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43236== by 0x1226E5: main (TestMonodomainTissue.cpp:19) +==43236== +==43236== Open file descriptor 115: +==43236== +==43236== +==43236== Open file descriptor 112: +==43236== +==43236== +==43236== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainTissue_valgrind.txt +==43236== +==43236== +==43236== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43236== +==43236== +==43236== +==43236== HEAP SUMMARY: +==43236== in use at exit: 618,334 bytes in 8,238 blocks +==43236== total heap usage: 260,748 allocs, 252,510 frees, 1,394,488,904 bytes allocated +==43236== +==43236== LEAK SUMMARY: +==43236== definitely lost: 0 bytes in 0 blocks +==43236== indirectly lost: 0 bytes in 0 blocks +==43236== possibly lost: 0 bytes in 0 blocks +==43236== still reachable: 24 bytes in 2 blocks +==43236== suppressed: 618,310 bytes in 8,236 blocks +==43236== Reachable blocks (those to which a pointer was found) are not shown. +==43236== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43236== +==43236== For lists of detected and suppressed errors, rerun with: -s +==43236== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestMonodomainWithSvi_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMonodomainWithSvi_valgrind.txt new file mode 100644 index 000000000..2fe6049a0 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMonodomainWithSvi_valgrind.txt @@ -0,0 +1,73 @@ +==43243== Memcheck, a memory error detector +==43243== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43243== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43243== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainWithSvi -malloc_debug -malloc_dump -memory_info +==43243== Parent PID: 23903 +==43243== +==43243== +==43243== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43243== Open file descriptor 12: +==43243== at 0xA7DF07D: pipe (pipe.c:29) +==43243== by 0x1432407D: ??? +==43243== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43243== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43243== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43243== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43243== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43243== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43243== by 0x123842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43243== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43243== by 0x121416: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43243== by 0x1212B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43243== by 0x12194D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43243== by 0x11D175: main (TestMonodomainWithSvi.cpp:19) +==43243== +==43243== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43243== at 0xA7E3A1C: __open_nocancel (open64_nocancel.c:39) +==43243== by 0xA767BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43243== by 0xA100822: ??? +==43243== by 0xA10096F: ??? +==43243== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43243== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43243== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43243== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43243== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43243== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43243== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43243== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43243== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43243== by 0x123842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43243== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43243== by 0x121416: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43243== by 0x1212B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43243== by 0x12194D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43243== by 0x11D175: main (TestMonodomainWithSvi.cpp:19) +==43243== +==43243== Open file descriptor 115: +==43243== +==43243== +==43243== Open file descriptor 112: +==43243== +==43243== +==43243== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainWithSvi_valgrind.txt +==43243== +==43243== +==43243== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43243== +==43243== +==43243== +==43243== HEAP SUMMARY: +==43243== in use at exit: 618,743 bytes in 8,244 blocks +==43243== total heap usage: 3,755,451 allocs, 3,747,207 frees, 1,783,479,978 bytes allocated +==43243== +==43243== LEAK SUMMARY: +==43243== definitely lost: 0 bytes in 0 blocks +==43243== indirectly lost: 0 bytes in 0 blocks +==43243== possibly lost: 0 bytes in 0 blocks +==43243== still reachable: 24 bytes in 2 blocks +==43243== suppressed: 618,719 bytes in 8,242 blocks +==43243== Reachable blocks (those to which a pointer was found) are not shown. +==43243== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43243== +==43243== For lists of detected and suppressed errors, rerun with: -s +==43243== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 78 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestMonodomainWithTimeAdaptivity_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMonodomainWithTimeAdaptivity_valgrind.txt new file mode 100644 index 000000000..75ffa5ba0 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMonodomainWithTimeAdaptivity_valgrind.txt @@ -0,0 +1,73 @@ +==43257== Memcheck, a memory error detector +==43257== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43257== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43257== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainWithTimeAdaptivity -malloc_debug -malloc_dump -memory_info +==43257== Parent PID: 23903 +==43257== +==43257== +==43257== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43257== Open file descriptor 12: +==43257== at 0xBC0507D: pipe (pipe.c:29) +==43257== by 0x1432407D: ??? +==43257== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43257== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43257== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43257== by 0xA160D38: PetscInitialize (pinit.c:924) +==43257== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43257== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43257== by 0x127824: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43257== by 0x121AED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43257== by 0x124B6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43257== by 0x124A0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43257== by 0x1250A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43257== by 0x11FF15: main (TestMonodomainWithTimeAdaptivity.cpp:19) +==43257== +==43257== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43257== at 0xBC09A1C: __open_nocancel (open64_nocancel.c:39) +==43257== by 0xBB8DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43257== by 0xB3EF822: ??? +==43257== by 0xB3EF96F: ??? +==43257== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43257== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43257== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43257== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43257== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43257== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43257== by 0xA160D38: PetscInitialize (pinit.c:924) +==43257== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43257== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43257== by 0x127824: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43257== by 0x121AED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43257== by 0x124B6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43257== by 0x124A0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43257== by 0x1250A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43257== by 0x11FF15: main (TestMonodomainWithTimeAdaptivity.cpp:19) +==43257== +==43257== Open file descriptor 115: +==43257== +==43257== +==43257== Open file descriptor 112: +==43257== +==43257== +==43257== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainWithTimeAdaptivity_valgrind.txt +==43257== +==43257== +==43257== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43257== +==43257== +==43257== +==43257== HEAP SUMMARY: +==43257== in use at exit: 618,743 bytes in 8,244 blocks +==43257== total heap usage: 1,145,049 allocs, 1,136,805 frees, 1,400,680,369 bytes allocated +==43257== +==43257== LEAK SUMMARY: +==43257== definitely lost: 0 bytes in 0 blocks +==43257== indirectly lost: 0 bytes in 0 blocks +==43257== possibly lost: 0 bytes in 0 blocks +==43257== still reachable: 24 bytes in 2 blocks +==43257== suppressed: 618,719 bytes in 8,242 blocks +==43257== Reachable blocks (those to which a pointer was found) are not shown. +==43257== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43257== +==43257== For lists of detected and suppressed errors, rerun with: -s +==43257== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 45 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestMoreMechanics_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMoreMechanics_valgrind.txt new file mode 100644 index 000000000..bf42c171d --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMoreMechanics_valgrind.txt @@ -0,0 +1,73 @@ +==25176== Memcheck, a memory error detector +==25176== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25176== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25176== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMoreMechanics -malloc_debug -malloc_dump -memory_info +==25176== Parent PID: 23903 +==25176== +==25176== +==25176== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25176== Open file descriptor 12: +==25176== at 0x866707D: pipe (pipe.c:29) +==25176== by 0x106D807D: ??? +==25176== by 0xC4EC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25176== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25176== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25176== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25176== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25176== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25176== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25176== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25176== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25176== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25176== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25176== by 0x135775: main (TestMoreMechanics.cpp:19) +==25176== +==25176== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25176== at 0x866BA1C: __open_nocancel (open64_nocancel.c:39) +==25176== by 0x85EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25176== by 0x7EBB822: ??? +==25176== by 0x7EBB96F: ??? +==25176== by 0xC5916DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25176== by 0xC591938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25176== by 0xC547922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25176== by 0xC4EC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25176== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25176== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25176== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25176== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25176== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25176== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25176== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25176== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25176== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25176== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25176== by 0x135775: main (TestMoreMechanics.cpp:19) +==25176== +==25176== Open file descriptor 115: +==25176== +==25176== +==25176== Open file descriptor 112: +==25176== +==25176== +==25176== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMoreMechanics_valgrind.txt +==25176== +==25176== +==25176== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25176== +==25176== +==25176== +==25176== HEAP SUMMARY: +==25176== in use at exit: 618,199 bytes in 8,234 blocks +==25176== total heap usage: 376,390 allocs, 368,156 frees, 1,439,963,584 bytes allocated +==25176== +==25176== LEAK SUMMARY: +==25176== definitely lost: 0 bytes in 0 blocks +==25176== indirectly lost: 0 bytes in 0 blocks +==25176== possibly lost: 0 bytes in 0 blocks +==25176== still reachable: 24 bytes in 2 blocks +==25176== suppressed: 618,175 bytes in 8,232 blocks +==25176== Reachable blocks (those to which a pointer was found) are not shown. +==25176== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25176== +==25176== For lists of detected and suppressed errors, rerun with: -s +==25176== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2024-09-07_08-54-51/TestMultiLobeAirwayGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMultiLobeAirwayGenerator_valgrind.txt new file mode 100644 index 000000000..d91692939 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMultiLobeAirwayGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==40940== Memcheck, a memory error detector +==40940== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40940== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40940== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMultiLobeAirwayGenerator -malloc_debug -malloc_dump -memory_info +==40940== Parent PID: 23903 +==40940== +==40940== +==40940== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40940== Open file descriptor 12: +==40940== at 0x8D2D07D: pipe (pipe.c:29) +==40940== by 0x107A507D: ??? +==40940== by 0xC0944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40940== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40940== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40940== by 0x679ED38: PetscInitialize (pinit.c:924) +==40940== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40940== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40940== by 0x11A3B7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40940== by 0x11592D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40940== by 0x118434: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40940== by 0x1182D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40940== by 0x11896B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40940== by 0x113D55: main (TestMultiLobeAirwayGenerator.cpp:19) +==40940== +==40940== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40940== at 0x8D31A1C: __open_nocancel (open64_nocancel.c:39) +==40940== by 0x8CB5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40940== by 0x7A2D822: ??? +==40940== by 0x7A2D96F: ??? +==40940== by 0xC1396DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40940== by 0xC139938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40940== by 0xC0EF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40940== by 0xC0942DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40940== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40940== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40940== by 0x679ED38: PetscInitialize (pinit.c:924) +==40940== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40940== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40940== by 0x11A3B7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40940== by 0x11592D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40940== by 0x118434: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40940== by 0x1182D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40940== by 0x11896B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40940== by 0x113D55: main (TestMultiLobeAirwayGenerator.cpp:19) +==40940== +==40940== Open file descriptor 115: +==40940== +==40940== +==40940== Open file descriptor 112: +==40940== +==40940== +==40940== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMultiLobeAirwayGenerator_valgrind.txt +==40940== +==40940== +==40940== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40940== +==40940== +==40940== +==40940== HEAP SUMMARY: +==40940== in use at exit: 618,318 bytes in 8,238 blocks +==40940== total heap usage: 175,714 allocs, 167,476 frees, 1,419,543,086 bytes allocated +==40940== +==40940== LEAK SUMMARY: +==40940== definitely lost: 0 bytes in 0 blocks +==40940== indirectly lost: 0 bytes in 0 blocks +==40940== possibly lost: 0 bytes in 0 blocks +==40940== still reachable: 24 bytes in 2 blocks +==40940== suppressed: 618,294 bytes in 8,236 blocks +==40940== Reachable blocks (those to which a pointer was found) are not shown. +==40940== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40940== +==40940== For lists of detected and suppressed errors, rerun with: -s +==40940== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestMutableMeshRemesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMutableMeshRemesh_valgrind.txt new file mode 100644 index 000000000..caf0f7448 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMutableMeshRemesh_valgrind.txt @@ -0,0 +1,73 @@ +==24339== Memcheck, a memory error detector +==24339== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24339== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24339== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableMeshRemesh -malloc_debug -malloc_dump -memory_info +==24339== Parent PID: 23903 +==24339== +==24339== +==24339== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24339== Open file descriptor 12: +==24339== at 0x6C5407D: pipe (pipe.c:29) +==24339== by 0x100C507D: ??? +==24339== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24339== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24339== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24339== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24339== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24339== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24339== by 0x1241D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24339== by 0x11F1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24339== by 0x121F40: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24339== by 0x121DE0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24339== by 0x122477: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24339== by 0x11D615: main (TestMutableMeshRemesh.cpp:19) +==24339== +==24339== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24339== at 0x6C58A1C: __open_nocancel (open64_nocancel.c:39) +==24339== by 0x6BDCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24339== by 0x658F822: ??? +==24339== by 0x658F96F: ??? +==24339== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24339== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24339== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24339== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24339== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24339== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24339== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24339== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24339== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24339== by 0x1241D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24339== by 0x11F1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24339== by 0x121F40: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24339== by 0x121DE0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24339== by 0x122477: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24339== by 0x11D615: main (TestMutableMeshRemesh.cpp:19) +==24339== +==24339== Open file descriptor 115: +==24339== +==24339== +==24339== Open file descriptor 112: +==24339== +==24339== +==24339== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableMeshRemesh_valgrind.txt +==24339== +==24339== +==24339== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24339== +==24339== +==24339== +==24339== HEAP SUMMARY: +==24339== in use at exit: 618,222 bytes in 8,238 blocks +==24339== total heap usage: 264,074 allocs, 255,836 frees, 1,353,000,858 bytes allocated +==24339== +==24339== LEAK SUMMARY: +==24339== definitely lost: 0 bytes in 0 blocks +==24339== indirectly lost: 0 bytes in 0 blocks +==24339== possibly lost: 0 bytes in 0 blocks +==24339== still reachable: 24 bytes in 2 blocks +==24339== suppressed: 618,198 bytes in 8,236 blocks +==24339== Reachable blocks (those to which a pointer was found) are not shown. +==24339== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24339== +==24339== For lists of detected and suppressed errors, rerun with: -s +==24339== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestMutableMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMutableMesh_valgrind.txt new file mode 100644 index 000000000..973fc1a0c --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMutableMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24333== Memcheck, a memory error detector +==24333== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24333== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24333== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableMesh -malloc_debug -malloc_dump -memory_info +==24333== Parent PID: 23903 +==24333== +==24333== +==24333== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24333== Open file descriptor 12: +==24333== at 0x6C9607D: pipe (pipe.c:29) +==24333== by 0x100C507D: ??? +==24333== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24333== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24333== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24333== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24333== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24333== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24333== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24333== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24333== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24333== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24333== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24333== by 0x12C225: main (TestMutableMesh.cpp:19) +==24333== +==24333== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24333== at 0x6C9AA1C: __open_nocancel (open64_nocancel.c:39) +==24333== by 0x6C1EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24333== by 0x658F822: ??? +==24333== by 0x658F96F: ??? +==24333== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24333== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24333== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24333== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24333== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24333== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24333== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24333== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24333== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24333== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24333== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24333== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24333== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24333== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24333== by 0x12C225: main (TestMutableMesh.cpp:19) +==24333== +==24333== Open file descriptor 115: +==24333== +==24333== +==24333== Open file descriptor 112: +==24333== +==24333== +==24333== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableMesh_valgrind.txt +==24333== +==24333== +==24333== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24333== +==24333== +==24333== +==24333== HEAP SUMMARY: +==24333== in use at exit: 618,222 bytes in 8,238 blocks +==24333== total heap usage: 705,951 allocs, 697,713 frees, 1,368,455,690 bytes allocated +==24333== +==24333== LEAK SUMMARY: +==24333== definitely lost: 0 bytes in 0 blocks +==24333== indirectly lost: 0 bytes in 0 blocks +==24333== possibly lost: 0 bytes in 0 blocks +==24333== still reachable: 24 bytes in 2 blocks +==24333== suppressed: 618,198 bytes in 8,236 blocks +==24333== Reachable blocks (those to which a pointer was found) are not shown. +==24333== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24333== +==24333== For lists of detected and suppressed errors, rerun with: -s +==24333== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt new file mode 100644 index 000000000..ea7517caf --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt @@ -0,0 +1,73 @@ +==25954== Memcheck, a memory error detector +==25954== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25954== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25954== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMutableVertexMeshOperationsWithPopulationSrn -malloc_debug -malloc_dump -memory_info +==25954== Parent PID: 23903 +==25954== +==25954== +==25954== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25954== Open file descriptor 12: +==25954== at 0x10CB007D: pipe (pipe.c:29) +==25954== by 0x196AD07D: ??? +==25954== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25954== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25954== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25954== by 0xF225D38: PetscInitialize (pinit.c:924) +==25954== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25954== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25954== by 0x12FA43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25954== by 0x12AAD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25954== by 0x12D2E4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25954== by 0x12D1E0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25954== by 0x12D7F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25954== by 0x1292D5: main (TestMutableVertexMeshOperationsWithPopulationSrn.cpp:18) +==25954== +==25954== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25954== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==25954== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25954== by 0x104B4822: ??? +==25954== by 0x104B496F: ??? +==25954== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25954== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25954== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25954== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25954== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25954== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25954== by 0xF225D38: PetscInitialize (pinit.c:924) +==25954== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25954== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25954== by 0x12FA43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25954== by 0x12AAD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25954== by 0x12D2E4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25954== by 0x12D1E0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25954== by 0x12D7F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25954== by 0x1292D5: main (TestMutableVertexMeshOperationsWithPopulationSrn.cpp:18) +==25954== +==25954== Open file descriptor 115: +==25954== +==25954== +==25954== Open file descriptor 112: +==25954== +==25954== +==25954== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt +==25954== +==25954== +==25954== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25954== +==25954== +==25954== +==25954== HEAP SUMMARY: +==25954== in use at exit: 618,350 bytes in 8,239 blocks +==25954== total heap usage: 60,809 allocs, 52,570 frees, 1,339,311,555 bytes allocated +==25954== +==25954== LEAK SUMMARY: +==25954== definitely lost: 0 bytes in 0 blocks +==25954== indirectly lost: 0 bytes in 0 blocks +==25954== possibly lost: 0 bytes in 0 blocks +==25954== still reachable: 56 bytes in 3 blocks +==25954== suppressed: 618,294 bytes in 8,236 blocks +==25954== Reachable blocks (those to which a pointer was found) are not shown. +==25954== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25954== +==25954== For lists of detected and suppressed errors, rerun with: -s +==25954== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestMutableVertexMeshReMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMutableVertexMeshReMesh_valgrind.txt new file mode 100644 index 000000000..9875ef35e --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMutableVertexMeshReMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24642== Memcheck, a memory error detector +==24642== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24642== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24642== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMeshReMesh -malloc_debug -malloc_dump -memory_info +==24642== Parent PID: 23903 +==24642== +==24642== +==24642== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24642== Open file descriptor 12: +==24642== at 0x814B07D: pipe (pipe.c:29) +==24642== by 0x100C507D: ??? +==24642== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24642== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24642== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24642== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24642== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24642== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24642== by 0x1B0C07: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24642== by 0x1A87FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24642== by 0x1AC684: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24642== by 0x1AC524: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24642== by 0x1ACBBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24642== by 0x1A6C25: main (TestMutableVertexMeshReMesh.cpp:19) +==24642== +==24642== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24642== at 0x814FA1C: __open_nocancel (open64_nocancel.c:39) +==24642== by 0x80D3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24642== by 0x658F822: ??? +==24642== by 0x658F96F: ??? +==24642== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24642== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24642== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24642== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24642== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24642== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24642== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24642== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24642== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24642== by 0x1B0C07: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24642== by 0x1A87FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24642== by 0x1AC684: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24642== by 0x1AC524: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24642== by 0x1ACBBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24642== by 0x1A6C25: main (TestMutableVertexMeshReMesh.cpp:19) +==24642== +==24642== Open file descriptor 115: +==24642== +==24642== +==24642== Open file descriptor 112: +==24642== +==24642== +==24642== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshReMesh_valgrind.txt +==24642== +==24642== +==24642== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24642== +==24642== +==24642== +==24642== HEAP SUMMARY: +==24642== in use at exit: 620,774 bytes in 8,239 blocks +==24642== total heap usage: 81,708 allocs, 73,469 frees, 1,340,048,661 bytes allocated +==24642== +==24642== LEAK SUMMARY: +==24642== definitely lost: 0 bytes in 0 blocks +==24642== indirectly lost: 0 bytes in 0 blocks +==24642== possibly lost: 0 bytes in 0 blocks +==24642== still reachable: 2,576 bytes in 3 blocks +==24642== suppressed: 618,198 bytes in 8,236 blocks +==24642== Reachable blocks (those to which a pointer was found) are not shown. +==24642== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24642== +==24642== For lists of detected and suppressed errors, rerun with: -s +==24642== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestMutableVertexMeshRosetteMethods_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMutableVertexMeshRosetteMethods_valgrind.txt new file mode 100644 index 000000000..86c8d9a23 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMutableVertexMeshRosetteMethods_valgrind.txt @@ -0,0 +1,73 @@ +==24643== Memcheck, a memory error detector +==24643== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24643== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24643== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMeshRosetteMethods -malloc_debug -malloc_dump -memory_info +==24643== Parent PID: 23903 +==24643== +==24643== +==24643== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24643== Open file descriptor 12: +==24643== at 0x823407D: pipe (pipe.c:29) +==24643== by 0x100C507D: ??? +==24643== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24643== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24643== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24643== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24643== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24643== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24643== by 0x122CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24643== by 0x11DCDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24643== by 0x120960: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24643== by 0x120800: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24643== by 0x120E97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24643== by 0x11C105: main (TestMutableVertexMeshRosetteMethods.cpp:19) +==24643== +==24643== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24643== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24643== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24643== by 0x658F822: ??? +==24643== by 0x658F96F: ??? +==24643== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24643== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24643== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24643== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24643== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24643== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24643== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24643== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24643== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24643== by 0x122CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24643== by 0x11DCDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24643== by 0x120960: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24643== by 0x120800: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24643== by 0x120E97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24643== by 0x11C105: main (TestMutableVertexMeshRosetteMethods.cpp:19) +==24643== +==24643== Open file descriptor 115: +==24643== +==24643== +==24643== Open file descriptor 112: +==24643== +==24643== +==24643== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshRosetteMethods_valgrind.txt +==24643== +==24643== +==24643== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24643== +==24643== +==24643== +==24643== HEAP SUMMARY: +==24643== in use at exit: 620,774 bytes in 8,239 blocks +==24643== total heap usage: 53,313 allocs, 45,074 frees, 1,338,842,896 bytes allocated +==24643== +==24643== LEAK SUMMARY: +==24643== definitely lost: 0 bytes in 0 blocks +==24643== indirectly lost: 0 bytes in 0 blocks +==24643== possibly lost: 0 bytes in 0 blocks +==24643== still reachable: 2,576 bytes in 3 blocks +==24643== suppressed: 618,198 bytes in 8,236 blocks +==24643== Reachable blocks (those to which a pointer was found) are not shown. +==24643== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24643== +==24643== For lists of detected and suppressed errors, rerun with: -s +==24643== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestMutableVertexMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestMutableVertexMesh_valgrind.txt new file mode 100644 index 000000000..3911eb246 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestMutableVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24628== Memcheck, a memory error detector +==24628== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24628== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24628== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMesh -malloc_debug -malloc_dump -memory_info +==24628== Parent PID: 23903 +==24628== +==24628== +==24628== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24628== Open file descriptor 12: +==24628== at 0x814B07D: pipe (pipe.c:29) +==24628== by 0x100C507D: ??? +==24628== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24628== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24628== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24628== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24628== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24628== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24628== by 0x1B5143: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24628== by 0x1AE9BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24628== by 0x1B27F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24628== by 0x1B2696: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24628== by 0x1B2D2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24628== by 0x1ACDE5: main (TestMutableVertexMesh.cpp:19) +==24628== +==24628== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24628== at 0x814FA1C: __open_nocancel (open64_nocancel.c:39) +==24628== by 0x80D3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24628== by 0x658F822: ??? +==24628== by 0x658F96F: ??? +==24628== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24628== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24628== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24628== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24628== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24628== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24628== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24628== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24628== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24628== by 0x1B5143: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24628== by 0x1AE9BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24628== by 0x1B27F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24628== by 0x1B2696: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24628== by 0x1B2D2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24628== by 0x1ACDE5: main (TestMutableVertexMesh.cpp:19) +==24628== +==24628== Open file descriptor 115: +==24628== +==24628== +==24628== Open file descriptor 112: +==24628== +==24628== +==24628== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMesh_valgrind.txt +==24628== +==24628== +==24628== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24628== +==24628== +==24628== +==24628== HEAP SUMMARY: +==24628== in use at exit: 620,774 bytes in 8,239 blocks +==24628== total heap usage: 58,721 allocs, 50,482 frees, 1,339,663,010 bytes allocated +==24628== +==24628== LEAK SUMMARY: +==24628== definitely lost: 0 bytes in 0 blocks +==24628== indirectly lost: 0 bytes in 0 blocks +==24628== possibly lost: 0 bytes in 0 blocks +==24628== still reachable: 2,576 bytes in 3 blocks +==24628== suppressed: 618,198 bytes in 8,236 blocks +==24628== Reachable blocks (those to which a pointer was found) are not shown. +==24628== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24628== +==24628== For lists of detected and suppressed errors, rerun with: -s +==24628== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestNeumannStimulus_valgrind.txt b/log-files/2024-09-07_08-54-51/TestNeumannStimulus_valgrind.txt new file mode 100644 index 000000000..11cde3f51 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestNeumannStimulus_valgrind.txt @@ -0,0 +1,73 @@ +==43372== Memcheck, a memory error detector +==43372== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43372== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43372== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestNeumannStimulus -malloc_debug -malloc_dump -memory_info +==43372== Parent PID: 23903 +==43372== +==43372== +==43372== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43372== Open file descriptor 12: +==43372== at 0xAB7C07D: pipe (pipe.c:29) +==43372== by 0x1432407D: ??? +==43372== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43372== by 0xC277418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43372== by 0xC210D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43372== by 0xAF05D38: PetscInitialize (pinit.c:924) +==43372== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43372== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43372== by 0x12243C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43372== by 0x11D413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43372== by 0x11F854: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43372== by 0x11F750: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43372== by 0x11FD63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43372== by 0x11BC15: main (TestNeumannStimulus.cpp:18) +==43372== +==43372== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43372== at 0xAB80A1C: __open_nocancel (open64_nocancel.c:39) +==43372== by 0xAB04BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43372== by 0xA49D822: ??? +==43372== by 0xA49D96F: ??? +==43372== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43372== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43372== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43372== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43372== by 0xC277418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43372== by 0xC210D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43372== by 0xAF05D38: PetscInitialize (pinit.c:924) +==43372== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43372== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43372== by 0x12243C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43372== by 0x11D413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43372== by 0x11F854: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43372== by 0x11F750: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43372== by 0x11FD63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43372== by 0x11BC15: main (TestNeumannStimulus.cpp:18) +==43372== +==43372== Open file descriptor 115: +==43372== +==43372== +==43372== Open file descriptor 112: +==43372== +==43372== +==43372== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNeumannStimulus_valgrind.txt +==43372== +==43372== +==43372== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43372== +==43372== +==43372== +==43372== HEAP SUMMARY: +==43372== in use at exit: 618,814 bytes in 8,248 blocks +==43372== total heap usage: 100,655 allocs, 92,407 frees, 1,350,844,198 bytes allocated +==43372== +==43372== LEAK SUMMARY: +==43372== definitely lost: 0 bytes in 0 blocks +==43372== indirectly lost: 0 bytes in 0 blocks +==43372== possibly lost: 0 bytes in 0 blocks +==43372== still reachable: 24 bytes in 2 blocks +==43372== suppressed: 618,790 bytes in 8,246 blocks +==43372== Reachable blocks (those to which a pointer was found) are not shown. +==43372== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43372== +==43372== For lists of detected and suppressed errors, rerun with: -s +==43372== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2024-09-07_08-54-51/TestNhsModelWithBackwardSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestNhsModelWithBackwardSolver_valgrind.txt new file mode 100644 index 000000000..7f6872f87 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestNhsModelWithBackwardSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43105== Memcheck, a memory error detector +==43105== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43105== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43105== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestNhsModelWithBackwardSolver -malloc_debug -malloc_dump -memory_info +==43105== Parent PID: 23903 +==43105== +==43105== +==43105== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43105== Open file descriptor 12: +==43105== at 0x87AE07D: pipe (pipe.c:29) +==43105== by 0x1432407D: ??? +==43105== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43105== by 0x9EA9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43105== by 0x9E42D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43105== by 0x8B39D38: PetscInitialize (pinit.c:924) +==43105== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43105== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43105== by 0x118B18: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43105== by 0x114093: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43105== by 0x11647E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43105== by 0x116379: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43105== by 0x11698D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43105== by 0x112895: main (TestNhsModelWithBackwardSolver.cpp:18) +==43105== +==43105== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43105== at 0x87B2A1C: __open_nocancel (open64_nocancel.c:39) +==43105== by 0x8736BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43105== by 0x8416822: ??? +==43105== by 0x841696F: ??? +==43105== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43105== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43105== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43105== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43105== by 0x9EA9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43105== by 0x9E42D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43105== by 0x8B39D38: PetscInitialize (pinit.c:924) +==43105== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43105== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43105== by 0x118B18: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43105== by 0x114093: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43105== by 0x11647E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43105== by 0x116379: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43105== by 0x11698D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43105== by 0x112895: main (TestNhsModelWithBackwardSolver.cpp:18) +==43105== +==43105== Open file descriptor 115: +==43105== +==43105== +==43105== Open file descriptor 112: +==43105== +==43105== +==43105== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNhsModelWithBackwardSolver_valgrind.txt +==43105== +==43105== +==43105== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43105== +==43105== +==43105== +==43105== HEAP SUMMARY: +==43105== in use at exit: 618,334 bytes in 8,238 blocks +==43105== total heap usage: 49,066 allocs, 40,828 frees, 1,338,539,654 bytes allocated +==43105== +==43105== LEAK SUMMARY: +==43105== definitely lost: 0 bytes in 0 blocks +==43105== indirectly lost: 0 bytes in 0 blocks +==43105== possibly lost: 0 bytes in 0 blocks +==43105== still reachable: 24 bytes in 2 blocks +==43105== suppressed: 618,310 bytes in 8,236 blocks +==43105== Reachable blocks (those to which a pointer was found) are not shown. +==43105== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43105== +==43105== For lists of detected and suppressed errors, rerun with: -s +==43105== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestNodeAttributes_valgrind.txt b/log-files/2024-09-07_08-54-51/TestNodeAttributes_valgrind.txt new file mode 100644 index 000000000..0a015e54c --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestNodeAttributes_valgrind.txt @@ -0,0 +1,73 @@ +==24361== Memcheck, a memory error detector +==24361== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24361== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24361== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNodeAttributes -malloc_debug -malloc_dump -memory_info +==24361== Parent PID: 23903 +==24361== +==24361== +==24361== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24361== Open file descriptor 12: +==24361== at 0x695107D: pipe (pipe.c:29) +==24361== by 0x100C307D: ??? +==24361== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24361== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24361== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24361== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24361== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24361== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24361== by 0x1396D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24361== by 0x134029: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24361== by 0x136E5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24361== by 0x136CFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24361== by 0x137391: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24361== by 0x132445: main (TestNodeAttributes.cpp:19) +==24361== +==24361== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24361== at 0x6955A1C: __open_nocancel (open64_nocancel.c:39) +==24361== by 0x68D9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24361== by 0x658F822: ??? +==24361== by 0x658F96F: ??? +==24361== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24361== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24361== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24361== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24361== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24361== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24361== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24361== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24361== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24361== by 0x1396D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24361== by 0x134029: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24361== by 0x136E5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24361== by 0x136CFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24361== by 0x137391: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24361== by 0x132445: main (TestNodeAttributes.cpp:19) +==24361== +==24361== Open file descriptor 115: +==24361== +==24361== +==24361== Open file descriptor 112: +==24361== +==24361== +==24361== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeAttributes_valgrind.txt +==24361== +==24361== +==24361== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24361== +==24361== +==24361== +==24361== HEAP SUMMARY: +==24361== in use at exit: 618,222 bytes in 8,238 blocks +==24361== total heap usage: 47,488 allocs, 39,250 frees, 1,338,443,164 bytes allocated +==24361== +==24361== LEAK SUMMARY: +==24361== definitely lost: 0 bytes in 0 blocks +==24361== indirectly lost: 0 bytes in 0 blocks +==24361== possibly lost: 0 bytes in 0 blocks +==24361== still reachable: 24 bytes in 2 blocks +==24361== suppressed: 618,198 bytes in 8,236 blocks +==24361== Reachable blocks (those to which a pointer was found) are not shown. +==24361== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24361== +==24361== For lists of detected and suppressed errors, rerun with: -s +==24361== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestNodeBasedCellPopulationParallelMethods_valgrind.txt b/log-files/2024-09-07_08-54-51/TestNodeBasedCellPopulationParallelMethods_valgrind.txt new file mode 100644 index 000000000..2193ea051 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestNodeBasedCellPopulationParallelMethods_valgrind.txt @@ -0,0 +1,73 @@ +==25985== Memcheck, a memory error detector +==25985== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25985== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25985== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationParallelMethods -malloc_debug -malloc_dump -memory_info +==25985== Parent PID: 23903 +==25985== +==25985== +==25985== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25985== Open file descriptor 12: +==25985== at 0xF8E007D: pipe (pipe.c:29) +==25985== by 0x196AD07D: ??? +==25985== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25985== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25985== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25985== by 0x10210D38: PetscInitialize (pinit.c:924) +==25985== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25985== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25985== by 0x13F4FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25985== by 0x13824D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25985== by 0x13AF0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25985== by 0x13ADAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25985== by 0x13B441: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25985== by 0x136675: main (TestNodeBasedCellPopulationParallelMethods.cpp:19) +==25985== +==25985== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25985== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==25985== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25985== by 0xF136822: ??? +==25985== by 0xF13696F: ??? +==25985== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25985== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25985== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25985== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25985== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25985== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25985== by 0x10210D38: PetscInitialize (pinit.c:924) +==25985== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25985== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25985== by 0x13F4FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25985== by 0x13824D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25985== by 0x13AF0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25985== by 0x13ADAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25985== by 0x13B441: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25985== by 0x136675: main (TestNodeBasedCellPopulationParallelMethods.cpp:19) +==25985== +==25985== Open file descriptor 115: +==25985== +==25985== +==25985== Open file descriptor 112: +==25985== +==25985== +==25985== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationParallelMethods_valgrind.txt +==25985== +==25985== +==25985== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25985== +==25985== +==25985== +==25985== HEAP SUMMARY: +==25985== in use at exit: 618,350 bytes in 8,239 blocks +==25985== total heap usage: 60,257 allocs, 52,018 frees, 1,342,416,780 bytes allocated +==25985== +==25985== LEAK SUMMARY: +==25985== definitely lost: 0 bytes in 0 blocks +==25985== indirectly lost: 0 bytes in 0 blocks +==25985== possibly lost: 0 bytes in 0 blocks +==25985== still reachable: 56 bytes in 3 blocks +==25985== suppressed: 618,294 bytes in 8,236 blocks +==25985== Reachable blocks (those to which a pointer was found) are not shown. +==25985== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25985== +==25985== For lists of detected and suppressed errors, rerun with: -s +==25985== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt b/log-files/2024-09-07_08-54-51/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt new file mode 100644 index 000000000..b67ceb1ee --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt @@ -0,0 +1,73 @@ +==25986== Memcheck, a memory error detector +==25986== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25986== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25986== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithBuskeUpdate -malloc_debug -malloc_dump -memory_info +==25986== Parent PID: 23903 +==25986== +==25986== +==25986== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25986== Open file descriptor 12: +==25986== at 0xF83B07D: pipe (pipe.c:29) +==25986== by 0x196AD07D: ??? +==25986== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25986== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25986== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25986== by 0x10127D38: PetscInitialize (pinit.c:924) +==25986== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25986== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25986== by 0x2CC5B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25986== by 0x2C3A9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25986== by 0x2C7EB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25986== by 0x2C7DB3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25986== by 0x2C83C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25986== by 0x2C2295: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) +==25986== +==25986== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25986== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==25986== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25986== by 0xF136822: ??? +==25986== by 0xF13696F: ??? +==25986== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25986== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25986== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25986== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25986== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25986== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25986== by 0x10127D38: PetscInitialize (pinit.c:924) +==25986== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25986== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25986== by 0x2CC5B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25986== by 0x2C3A9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25986== by 0x2C7EB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25986== by 0x2C7DB3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25986== by 0x2C83C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25986== by 0x2C2295: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) +==25986== +==25986== Open file descriptor 115: +==25986== +==25986== +==25986== Open file descriptor 112: +==25986== +==25986== +==25986== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt +==25986== +==25986== +==25986== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25986== +==25986== +==25986== +==25986== HEAP SUMMARY: +==25986== in use at exit: 618,350 bytes in 8,239 blocks +==25986== total heap usage: 56,998 allocs, 48,759 frees, 1,340,208,388 bytes allocated +==25986== +==25986== LEAK SUMMARY: +==25986== definitely lost: 0 bytes in 0 blocks +==25986== indirectly lost: 0 bytes in 0 blocks +==25986== possibly lost: 0 bytes in 0 blocks +==25986== still reachable: 56 bytes in 3 blocks +==25986== suppressed: 618,294 bytes in 8,236 blocks +==25986== Reachable blocks (those to which a pointer was found) are not shown. +==25986== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25986== +==25986== For lists of detected and suppressed errors, rerun with: -s +==25986== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestNodeBasedCellPopulationWithParticles_valgrind.txt b/log-files/2024-09-07_08-54-51/TestNodeBasedCellPopulationWithParticles_valgrind.txt new file mode 100644 index 000000000..698a17a22 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestNodeBasedCellPopulationWithParticles_valgrind.txt @@ -0,0 +1,73 @@ +==25987== Memcheck, a memory error detector +==25987== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25987== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25987== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithParticles -malloc_debug -malloc_dump -memory_info +==25987== Parent PID: 23903 +==25987== +==25987== +==25987== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25987== Open file descriptor 12: +==25987== at 0xF92407D: pipe (pipe.c:29) +==25987== by 0x196AD07D: ??? +==25987== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25987== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25987== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25987== by 0x10210D38: PetscInitialize (pinit.c:924) +==25987== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25987== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25987== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25987== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25987== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25987== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25987== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25987== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) +==25987== +==25987== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25987== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==25987== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25987== by 0xF136822: ??? +==25987== by 0xF13696F: ??? +==25987== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25987== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25987== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25987== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25987== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25987== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25987== by 0x10210D38: PetscInitialize (pinit.c:924) +==25987== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25987== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25987== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25987== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25987== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25987== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25987== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25987== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) +==25987== +==25987== Open file descriptor 115: +==25987== +==25987== +==25987== Open file descriptor 112: +==25987== +==25987== +==25987== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithParticles_valgrind.txt +==25987== +==25987== +==25987== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25987== +==25987== +==25987== +==25987== HEAP SUMMARY: +==25987== in use at exit: 618,350 bytes in 8,239 blocks +==25987== total heap usage: 103,599 allocs, 95,360 frees, 1,346,201,985 bytes allocated +==25987== +==25987== LEAK SUMMARY: +==25987== definitely lost: 0 bytes in 0 blocks +==25987== indirectly lost: 0 bytes in 0 blocks +==25987== possibly lost: 0 bytes in 0 blocks +==25987== still reachable: 56 bytes in 3 blocks +==25987== suppressed: 618,294 bytes in 8,236 blocks +==25987== Reachable blocks (those to which a pointer was found) are not shown. +==25987== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25987== +==25987== For lists of detected and suppressed errors, rerun with: -s +==25987== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestNodeBasedCellPopulation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestNodeBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..e45f3ba16 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestNodeBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==25964== Memcheck, a memory error detector +==25964== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25964== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25964== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==25964== Parent PID: 23903 +==25964== +==25964== +==25964== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25964== Open file descriptor 12: +==25964== at 0xF8CC07D: pipe (pipe.c:29) +==25964== by 0x196AD07D: ??? +==25964== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25964== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25964== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25964== by 0x10127D38: PetscInitialize (pinit.c:924) +==25964== by 0xF18B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25964== by 0xF18B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25964== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25964== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25964== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25964== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25964== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25964== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) +==25964== +==25964== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25964== at 0xF8D0A1C: __open_nocancel (open64_nocancel.c:39) +==25964== by 0xF854BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25964== by 0xF1C5822: ??? +==25964== by 0xF1C596F: ??? +==25964== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25964== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25964== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25964== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25964== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25964== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25964== by 0x10127D38: PetscInitialize (pinit.c:924) +==25964== by 0xF18B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25964== by 0xF18B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25964== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25964== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25964== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25964== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25964== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25964== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) +==25964== +==25964== Open file descriptor 115: +==25964== +==25964== +==25964== Open file descriptor 112: +==25964== +==25964== +==25964== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt +==25964== +==25964== +==25964== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25964== +==25964== +==25964== +==25964== HEAP SUMMARY: +==25964== in use at exit: 618,279 bytes in 8,235 blocks +==25964== total heap usage: 20,192,634 allocs, 20,184,399 frees, 2,562,969,546 bytes allocated +==25964== +==25964== LEAK SUMMARY: +==25964== definitely lost: 0 bytes in 0 blocks +==25964== indirectly lost: 0 bytes in 0 blocks +==25964== possibly lost: 0 bytes in 0 blocks +==25964== still reachable: 56 bytes in 3 blocks +==25964== suppressed: 618,223 bytes in 8,232 blocks +==25964== Reachable blocks (those to which a pointer was found) are not shown. +==25964== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25964== +==25964== For lists of detected and suppressed errors, rerun with: -s +==25964== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestNode_valgrind.txt b/log-files/2024-09-07_08-54-51/TestNode_valgrind.txt new file mode 100644 index 000000000..089eeba55 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestNode_valgrind.txt @@ -0,0 +1,73 @@ +==24353== Memcheck, a memory error detector +==24353== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24353== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24353== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNode -malloc_debug -malloc_dump -memory_info +==24353== Parent PID: 23903 +==24353== +==24353== +==24353== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24353== Open file descriptor 12: +==24353== at 0x6C9607D: pipe (pipe.c:29) +==24353== by 0x100C507D: ??? +==24353== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24353== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24353== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24353== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24353== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24353== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24353== by 0x13DE14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24353== by 0x138509: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24353== by 0x13B556: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24353== by 0x13B3F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24353== by 0x13BA8D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24353== by 0x136925: main (TestNode.cpp:19) +==24353== +==24353== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24353== at 0x6C9AA1C: __open_nocancel (open64_nocancel.c:39) +==24353== by 0x6C1EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24353== by 0x658F822: ??? +==24353== by 0x658F96F: ??? +==24353== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24353== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24353== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24353== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24353== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24353== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24353== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24353== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24353== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24353== by 0x13DE14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24353== by 0x138509: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24353== by 0x13B556: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24353== by 0x13B3F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24353== by 0x13BA8D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24353== by 0x136925: main (TestNode.cpp:19) +==24353== +==24353== Open file descriptor 115: +==24353== +==24353== +==24353== Open file descriptor 112: +==24353== +==24353== +==24353== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNode_valgrind.txt +==24353== +==24353== +==24353== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24353== +==24353== +==24353== +==24353== HEAP SUMMARY: +==24353== in use at exit: 618,222 bytes in 8,238 blocks +==24353== total heap usage: 47,490 allocs, 39,252 frees, 1,338,425,630 bytes allocated +==24353== +==24353== LEAK SUMMARY: +==24353== definitely lost: 0 bytes in 0 blocks +==24353== indirectly lost: 0 bytes in 0 blocks +==24353== possibly lost: 0 bytes in 0 blocks +==24353== still reachable: 24 bytes in 2 blocks +==24353== suppressed: 618,198 bytes in 8,236 blocks +==24353== Reachable blocks (those to which a pointer was found) are not shown. +==24353== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24353== +==24353== For lists of detected and suppressed errors, rerun with: -s +==24353== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestNodesOnlyMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestNodesOnlyMesh_valgrind.txt new file mode 100644 index 000000000..32d403b1c --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24362== Memcheck, a memory error detector +==24362== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24362== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24362== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==24362== Parent PID: 23903 +==24362== +==24362== +==24362== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24362== Open file descriptor 12: +==24362== at 0x6D7D07D: pipe (pipe.c:29) +==24362== by 0x100C507D: ??? +==24362== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24362== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24362== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24362== by 0x7017D38: PetscInitialize (pinit.c:924) +==24362== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24362== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24362== by 0x143026: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24362== by 0x13D7DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24362== by 0x14093C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24362== by 0x1407DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24362== by 0x140E73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24362== by 0x13BC05: main (TestNodesOnlyMesh.cpp:19) +==24362== +==24362== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24362== at 0x6D81A1C: __open_nocancel (open64_nocancel.c:39) +==24362== by 0x6D05BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24362== by 0x658F822: ??? +==24362== by 0x658F96F: ??? +==24362== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24362== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24362== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24362== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24362== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24362== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24362== by 0x7017D38: PetscInitialize (pinit.c:924) +==24362== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24362== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24362== by 0x143026: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24362== by 0x13D7DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24362== by 0x14093C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24362== by 0x1407DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24362== by 0x140E73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24362== by 0x13BC05: main (TestNodesOnlyMesh.cpp:19) +==24362== +==24362== Open file descriptor 115: +==24362== +==24362== +==24362== Open file descriptor 112: +==24362== +==24362== +==24362== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodesOnlyMesh_valgrind.txt +==24362== +==24362== +==24362== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24362== +==24362== +==24362== +==24362== HEAP SUMMARY: +==24362== in use at exit: 618,222 bytes in 8,238 blocks +==24362== total heap usage: 359,483 allocs, 351,245 frees, 1,358,353,641 bytes allocated +==24362== +==24362== LEAK SUMMARY: +==24362== definitely lost: 0 bytes in 0 blocks +==24362== indirectly lost: 0 bytes in 0 blocks +==24362== possibly lost: 0 bytes in 0 blocks +==24362== still reachable: 24 bytes in 2 blocks +==24362== suppressed: 618,198 bytes in 8,236 blocks +==24362== Reachable blocks (those to which a pointer was found) are not shown. +==24362== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24362== +==24362== For lists of detected and suppressed errors, rerun with: -s +==24362== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestNonCachedTetrahedralMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestNonCachedTetrahedralMesh_valgrind.txt new file mode 100644 index 000000000..0ce42cb1a --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestNonCachedTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24363== Memcheck, a memory error detector +==24363== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24363== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24363== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNonCachedTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==24363== Parent PID: 23903 +==24363== +==24363== +==24363== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24363== Open file descriptor 12: +==24363== at 0x6C9607D: pipe (pipe.c:29) +==24363== by 0x100C507D: ??? +==24363== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24363== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24363== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24363== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24363== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24363== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24363== by 0x121954: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24363== by 0x11CD9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24363== by 0x11F7E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24363== by 0x11F682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24363== by 0x11FD19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24363== by 0x11B1C5: main (TestNonCachedTetrahedralMesh.cpp:19) +==24363== +==24363== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24363== at 0x6C9AA1C: __open_nocancel (open64_nocancel.c:39) +==24363== by 0x6C1EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24363== by 0x658F822: ??? +==24363== by 0x658F96F: ??? +==24363== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24363== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24363== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24363== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24363== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24363== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24363== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24363== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24363== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24363== by 0x121954: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24363== by 0x11CD9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24363== by 0x11F7E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24363== by 0x11F682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24363== by 0x11FD19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24363== by 0x11B1C5: main (TestNonCachedTetrahedralMesh.cpp:19) +==24363== +==24363== Open file descriptor 115: +==24363== +==24363== +==24363== Open file descriptor 112: +==24363== +==24363== +==24363== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonCachedTetrahedralMesh_valgrind.txt +==24363== +==24363== +==24363== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24363== +==24363== +==24363== +==24363== HEAP SUMMARY: +==24363== in use at exit: 618,151 bytes in 8,234 blocks +==24363== total heap usage: 16,013,254 allocs, 16,005,020 frees, 3,441,282,313 bytes allocated +==24363== +==24363== LEAK SUMMARY: +==24363== definitely lost: 0 bytes in 0 blocks +==24363== indirectly lost: 0 bytes in 0 blocks +==24363== possibly lost: 0 bytes in 0 blocks +==24363== still reachable: 24 bytes in 2 blocks +==24363== suppressed: 618,127 bytes in 8,232 blocks +==24363== Reachable blocks (those to which a pointer was found) are not shown. +==24363== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24363== +==24363== For lists of detected and suppressed errors, rerun with: -s +==24363== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestNonlinearElasticityTools_valgrind.txt b/log-files/2024-09-07_08-54-51/TestNonlinearElasticityTools_valgrind.txt new file mode 100644 index 000000000..1e1fdcdfe --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestNonlinearElasticityTools_valgrind.txt @@ -0,0 +1,73 @@ +==25195== Memcheck, a memory error detector +==25195== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25195== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25195== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestNonlinearElasticityTools -malloc_debug -malloc_dump -memory_info +==25195== Parent PID: 23903 +==25195== +==25195== +==25195== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25195== Open file descriptor 12: +==25195== at 0x6DD407D: pipe (pipe.c:29) +==25195== by 0x106D907D: ??? +==25195== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25195== by 0x88A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25195== by 0x883FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25195== by 0x740BD38: PetscInitialize (pinit.c:924) +==25195== by 0x66D71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25195== by 0x66D7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25195== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25195== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25195== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25195== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25195== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25195== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) +==25195== +==25195== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25195== at 0x6DD8A1C: __open_nocancel (open64_nocancel.c:39) +==25195== by 0x6D5CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25195== by 0x6711822: ??? +==25195== by 0x671196F: ??? +==25195== by 0xC0846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25195== by 0xC084938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25195== by 0xC03A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25195== by 0xBFDF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25195== by 0x88A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25195== by 0x883FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25195== by 0x740BD38: PetscInitialize (pinit.c:924) +==25195== by 0x66D71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25195== by 0x66D7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25195== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25195== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25195== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25195== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25195== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25195== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) +==25195== +==25195== Open file descriptor 115: +==25195== +==25195== +==25195== Open file descriptor 112: +==25195== +==25195== +==25195== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonlinearElasticityTools_valgrind.txt +==25195== +==25195== +==25195== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25195== +==25195== +==25195== +==25195== HEAP SUMMARY: +==25195== in use at exit: 618,270 bytes in 8,238 blocks +==25195== total heap usage: 57,773 allocs, 49,535 frees, 1,339,460,814 bytes allocated +==25195== +==25195== LEAK SUMMARY: +==25195== definitely lost: 0 bytes in 0 blocks +==25195== indirectly lost: 0 bytes in 0 blocks +==25195== possibly lost: 0 bytes in 0 blocks +==25195== still reachable: 24 bytes in 2 blocks +==25195== suppressed: 618,246 bytes in 8,236 blocks +==25195== Reachable blocks (those to which a pointer was found) are not shown. +==25195== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25195== +==25195== For lists of detected and suppressed errors, rerun with: -s +==25195== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestNonlinearSolvers_valgrind.txt b/log-files/2024-09-07_08-54-51/TestNonlinearSolvers_valgrind.txt new file mode 100644 index 000000000..5454ed21b --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestNonlinearSolvers_valgrind.txt @@ -0,0 +1,73 @@ +==24218== Memcheck, a memory error detector +==24218== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24218== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24218== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestNonlinearSolvers -malloc_debug -malloc_dump -memory_info +==24218== Parent PID: 23903 +==24218== +==24218== +==24218== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24218== Open file descriptor 12: +==24218== at 0x60C107D: pipe (pipe.c:29) +==24218== by 0xAF3907D: ??? +==24218== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24218== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24218== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24218== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24218== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24218== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24218== by 0x1143C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24218== by 0x10FB69: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24218== by 0x1123C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24218== by 0x112266: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24218== by 0x1128FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24218== by 0x10D915: main (TestNonlinearSolvers.cpp:19) +==24218== +==24218== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24218== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24218== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24218== by 0x5D41822: ??? +==24218== by 0x5D4196F: ??? +==24218== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24218== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24218== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24218== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24218== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24218== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24218== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24218== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24218== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24218== by 0x1143C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24218== by 0x10FB69: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24218== by 0x1123C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24218== by 0x112266: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24218== by 0x1128FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24218== by 0x10D915: main (TestNonlinearSolvers.cpp:19) +==24218== +==24218== Open file descriptor 115: +==24218== +==24218== +==24218== Open file descriptor 112: +==24218== +==24218== +==24218== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonlinearSolvers_valgrind.txt +==24218== +==24218== +==24218== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24218== +==24218== +==24218== +==24218== HEAP SUMMARY: +==24218== in use at exit: 617,854 bytes in 8,238 blocks +==24218== total heap usage: 101,426 allocs, 93,188 frees, 1,348,558,298 bytes allocated +==24218== +==24218== LEAK SUMMARY: +==24218== definitely lost: 0 bytes in 0 blocks +==24218== indirectly lost: 0 bytes in 0 blocks +==24218== possibly lost: 0 bytes in 0 blocks +==24218== still reachable: 24 bytes in 2 blocks +==24218== suppressed: 617,830 bytes in 8,236 blocks +==24218== Reachable blocks (those to which a pointer was found) are not shown. +==24218== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24218== +==24218== For lists of detected and suppressed errors, rerun with: -s +==24218== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestNormallyDistributedTargetAreaModifier_valgrind.txt b/log-files/2024-09-07_08-54-51/TestNormallyDistributedTargetAreaModifier_valgrind.txt new file mode 100644 index 000000000..0f7650e18 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestNormallyDistributedTargetAreaModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26331== Memcheck, a memory error detector +==26331== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26331== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26331== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNormallyDistributedTargetAreaModifier -malloc_debug -malloc_dump -memory_info +==26331== Parent PID: 23903 +==26331== +==26331== +==26331== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26331== Open file descriptor 12: +==26331== at 0x10CF207D: pipe (pipe.c:29) +==26331== by 0x196AD07D: ??? +==26331== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26331== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26331== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26331== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26331== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26331== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26331== by 0x139D83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26331== by 0x1324FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26331== by 0x1357FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26331== by 0x13569C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26331== by 0x135D33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26331== by 0x130925: main (TestNormallyDistributedTargetAreaModifier.cpp:19) +==26331== +==26331== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26331== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26331== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26331== by 0xF136822: ??? +==26331== by 0xF13696F: ??? +==26331== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26331== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26331== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26331== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26331== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26331== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26331== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26331== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26331== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26331== by 0x139D83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26331== by 0x1324FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26331== by 0x1357FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26331== by 0x13569C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26331== by 0x135D33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26331== by 0x130925: main (TestNormallyDistributedTargetAreaModifier.cpp:19) +==26331== +==26331== Open file descriptor 115: +==26331== +==26331== +==26331== Open file descriptor 112: +==26331== +==26331== +==26331== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNormallyDistributedTargetAreaModifier_valgrind.txt +==26331== +==26331== +==26331== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26331== +==26331== +==26331== +==26331== HEAP SUMMARY: +==26331== in use at exit: 618,350 bytes in 8,239 blocks +==26331== total heap usage: 581,796 allocs, 573,557 frees, 1,435,425,501 bytes allocated +==26331== +==26331== LEAK SUMMARY: +==26331== definitely lost: 0 bytes in 0 blocks +==26331== indirectly lost: 0 bytes in 0 blocks +==26331== possibly lost: 0 bytes in 0 blocks +==26331== still reachable: 56 bytes in 3 blocks +==26331== suppressed: 618,294 bytes in 8,236 blocks +==26331== Reachable blocks (those to which a pointer was found) are not shown. +==26331== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26331== +==26331== For lists of detected and suppressed errors, rerun with: -s +==26331== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestNumericFileComparison_valgrind.txt b/log-files/2024-09-07_08-54-51/TestNumericFileComparison_valgrind.txt new file mode 100644 index 000000000..dc2b5b324 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestNumericFileComparison_valgrind.txt @@ -0,0 +1,73 @@ +==24059== Memcheck, a memory error detector +==24059== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24059== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24059== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestNumericFileComparison -malloc_debug -malloc_dump -memory_info +==24059== Parent PID: 23903 +==24059== +==24059== +==24059== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24059== Open file descriptor 12: +==24059== at 0x4CB207D: pipe (pipe.c:29) +==24059== by 0xAEA507D: ??? +==24059== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24059== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24059== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24059== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24059== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24059== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24059== by 0x115A5C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24059== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24059== by 0x112A1A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24059== by 0x112915: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24059== by 0x112F29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24059== by 0x10EA95: main (TestNumericFileComparison.cpp:18) +==24059== +==24059== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24059== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24059== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24059== by 0x4934822: ??? +==24059== by 0x493496F: ??? +==24059== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24059== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24059== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24059== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24059== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24059== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24059== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24059== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24059== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24059== by 0x115A5C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24059== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24059== by 0x112A1A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24059== by 0x112915: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24059== by 0x112F29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24059== by 0x10EA95: main (TestNumericFileComparison.cpp:18) +==24059== +==24059== Open file descriptor 115: +==24059== +==24059== +==24059== Open file descriptor 112: +==24059== +==24059== +==24059== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNumericFileComparison_valgrind.txt +==24059== +==24059== +==24059== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24059== +==24059== +==24059== +==24059== HEAP SUMMARY: +==24059== in use at exit: 617,838 bytes in 8,238 blocks +==24059== total heap usage: 45,727 allocs, 37,489 frees, 1,338,466,476 bytes allocated +==24059== +==24059== LEAK SUMMARY: +==24059== definitely lost: 0 bytes in 0 blocks +==24059== indirectly lost: 0 bytes in 0 blocks +==24059== possibly lost: 0 bytes in 0 blocks +==24059== still reachable: 24 bytes in 2 blocks +==24059== suppressed: 617,814 bytes in 8,236 blocks +==24059== Reachable blocks (those to which a pointer was found) are not shown. +==24059== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24059== +==24059== For lists of detected and suppressed errors, rerun with: -s +==24059== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestNumericalMethods_valgrind.txt b/log-files/2024-09-07_08-54-51/TestNumericalMethods_valgrind.txt new file mode 100644 index 000000000..b6be493df --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestNumericalMethods_valgrind.txt @@ -0,0 +1,73 @@ +==26266== Memcheck, a memory error detector +==26266== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26266== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26266== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNumericalMethods -malloc_debug -malloc_dump -memory_info +==26266== Parent PID: 23903 +==26266== +==26266== +==26266== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26266== Open file descriptor 12: +==26266== at 0xF8E007D: pipe (pipe.c:29) +==26266== by 0x196AD07D: ??? +==26266== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26266== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26266== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26266== by 0x10210D38: PetscInitialize (pinit.c:924) +==26266== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26266== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26266== by 0x13A648: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26266== by 0x13504D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26266== by 0x137DD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26266== by 0x137C74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26266== by 0x13830B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26266== by 0x133475: main (TestNumericalMethods.cpp:19) +==26266== +==26266== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26266== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==26266== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26266== by 0xF136822: ??? +==26266== by 0xF13696F: ??? +==26266== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26266== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26266== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26266== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26266== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26266== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26266== by 0x10210D38: PetscInitialize (pinit.c:924) +==26266== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26266== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26266== by 0x13A648: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26266== by 0x13504D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26266== by 0x137DD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26266== by 0x137C74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26266== by 0x13830B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26266== by 0x133475: main (TestNumericalMethods.cpp:19) +==26266== +==26266== Open file descriptor 115: +==26266== +==26266== +==26266== Open file descriptor 112: +==26266== +==26266== +==26266== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNumericalMethods_valgrind.txt +==26266== +==26266== +==26266== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26266== +==26266== +==26266== +==26266== HEAP SUMMARY: +==26266== in use at exit: 618,350 bytes in 8,239 blocks +==26266== total heap usage: 69,186 allocs, 60,947 frees, 1,341,832,606 bytes allocated +==26266== +==26266== LEAK SUMMARY: +==26266== definitely lost: 0 bytes in 0 blocks +==26266== indirectly lost: 0 bytes in 0 blocks +==26266== possibly lost: 0 bytes in 0 blocks +==26266== still reachable: 56 bytes in 3 blocks +==26266== suppressed: 618,294 bytes in 8,236 blocks +==26266== Reachable blocks (those to which a pointer was found) are not shown. +==26266== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26266== +==26266== For lists of detected and suppressed errors, rerun with: -s +==26266== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestObjectCommunicator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestObjectCommunicator_valgrind.txt new file mode 100644 index 000000000..084609711 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestObjectCommunicator_valgrind.txt @@ -0,0 +1,73 @@ +==24060== Memcheck, a memory error detector +==24060== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24060== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24060== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestObjectCommunicator -malloc_debug -malloc_dump -memory_info +==24060== Parent PID: 23903 +==24060== +==24060== +==24060== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24060== Open file descriptor 12: +==24060== at 0x61AB07D: pipe (pipe.c:29) +==24060== by 0xAEA507D: ??? +==24060== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24060== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24060== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24060== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24060== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24060== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24060== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24060== by 0x11C051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24060== by 0x11F5CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24060== by 0x11F46C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24060== by 0x11FB03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24060== by 0x11A325: main (TestObjectCommunicator.cpp:19) +==24060== +==24060== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24060== at 0x61AFA1C: __open_nocancel (open64_nocancel.c:39) +==24060== by 0x6133BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24060== by 0x4934822: ??? +==24060== by 0x493496F: ??? +==24060== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24060== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24060== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24060== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24060== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24060== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24060== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24060== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24060== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24060== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24060== by 0x11C051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24060== by 0x11F5CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24060== by 0x11F46C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24060== by 0x11FB03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24060== by 0x11A325: main (TestObjectCommunicator.cpp:19) +==24060== +==24060== Open file descriptor 115: +==24060== +==24060== +==24060== Open file descriptor 112: +==24060== +==24060== +==24060== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestObjectCommunicator_valgrind.txt +==24060== +==24060== +==24060== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24060== +==24060== +==24060== +==24060== HEAP SUMMARY: +==24060== in use at exit: 617,838 bytes in 8,238 blocks +==24060== total heap usage: 44,949 allocs, 36,711 frees, 1,338,161,970 bytes allocated +==24060== +==24060== LEAK SUMMARY: +==24060== definitely lost: 0 bytes in 0 blocks +==24060== indirectly lost: 0 bytes in 0 blocks +==24060== possibly lost: 0 bytes in 0 blocks +==24060== still reachable: 24 bytes in 2 blocks +==24060== suppressed: 617,814 bytes in 8,236 blocks +==24060== Reachable blocks (those to which a pointer was found) are not shown. +==24060== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24060== +==24060== For lists of detected and suppressed errors, rerun with: -s +==24060== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestObsoleteBoxCollection_valgrind.txt b/log-files/2024-09-07_08-54-51/TestObsoleteBoxCollection_valgrind.txt new file mode 100644 index 000000000..d5bf126ae --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestObsoleteBoxCollection_valgrind.txt @@ -0,0 +1,73 @@ +==24593== Memcheck, a memory error detector +==24593== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24593== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24593== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestObsoleteBoxCollection -malloc_debug -malloc_dump -memory_info +==24593== Parent PID: 23903 +==24593== +==24593== +==24593== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24593== Open file descriptor 12: +==24593== at 0x6D3B07D: pipe (pipe.c:29) +==24593== by 0x100C507D: ??? +==24593== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24593== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24593== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24593== by 0x7017D38: PetscInitialize (pinit.c:924) +==24593== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24593== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24593== by 0x153352: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24593== by 0x14DF8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24593== by 0x150FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24593== by 0x150E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24593== by 0x1514D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24593== by 0x14C3B5: main (TestObsoleteBoxCollection.cpp:19) +==24593== +==24593== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24593== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24593== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24593== by 0x658F822: ??? +==24593== by 0x658F96F: ??? +==24593== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24593== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24593== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24593== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24593== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24593== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24593== by 0x7017D38: PetscInitialize (pinit.c:924) +==24593== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24593== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24593== by 0x153352: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24593== by 0x14DF8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24593== by 0x150FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24593== by 0x150E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24593== by 0x1514D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24593== by 0x14C3B5: main (TestObsoleteBoxCollection.cpp:19) +==24593== +==24593== Open file descriptor 115: +==24593== +==24593== +==24593== Open file descriptor 112: +==24593== +==24593== +==24593== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestObsoleteBoxCollection_valgrind.txt +==24593== +==24593== +==24593== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24593== +==24593== +==24593== +==24593== HEAP SUMMARY: +==24593== in use at exit: 618,222 bytes in 8,238 blocks +==24593== total heap usage: 276,946 allocs, 268,708 frees, 1,447,217,759 bytes allocated +==24593== +==24593== LEAK SUMMARY: +==24593== definitely lost: 0 bytes in 0 blocks +==24593== indirectly lost: 0 bytes in 0 blocks +==24593== possibly lost: 0 bytes in 0 blocks +==24593== still reachable: 24 bytes in 2 blocks +==24593== suppressed: 618,198 bytes in 8,236 blocks +==24593== Reachable blocks (those to which a pointer was found) are not shown. +==24593== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24593== +==24593== For lists of detected and suppressed errors, rerun with: -s +==24593== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt new file mode 100644 index 000000000..588e1fa27 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40118== Memcheck, a memory error detector +==40118== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40118== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40118== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info +==40118== Parent PID: 23903 +==40118== +==40118== +==40118== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40118== Open file descriptor 12: +==40118== at 0x10B9907D: pipe (pipe.c:29) +==40118== by 0x1B36D07D: ??? +==40118== by 0x155114CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40118== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40118== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40118== by 0xF131D38: PetscInitialize (pinit.c:924) +==40118== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40118== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40118== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40118== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40118== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40118== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40118== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40118== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) +==40118== +==40118== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40118== at 0x10B9DA1C: __open_nocancel (open64_nocancel.c:39) +==40118== by 0x10B21BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40118== by 0xEFDD822: ??? +==40118== by 0xEFDD96F: ??? +==40118== by 0x155B66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40118== by 0x155B6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40118== by 0x1556C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40118== by 0x155112DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40118== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40118== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40118== by 0xF131D38: PetscInitialize (pinit.c:924) +==40118== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40118== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40118== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40118== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40118== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40118== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40118== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40118== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) +==40118== +==40118== Open file descriptor 115: +==40118== +==40118== +==40118== Open file descriptor 112: +==40118== +==40118== +==40118== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt +==40118== +==40118== +==40118== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40118== +==40118== +==40118== +==40118== HEAP SUMMARY: +==40118== in use at exit: 618,430 bytes in 8,240 blocks +==40118== total heap usage: 862,013 allocs, 853,773 frees, 1,460,910,449 bytes allocated +==40118== +==40118== LEAK SUMMARY: +==40118== definitely lost: 0 bytes in 0 blocks +==40118== indirectly lost: 0 bytes in 0 blocks +==40118== possibly lost: 0 bytes in 0 blocks +==40118== still reachable: 120 bytes in 4 blocks +==40118== suppressed: 618,310 bytes in 8,236 blocks +==40118== Reachable blocks (those to which a pointer was found) are not shown. +==40118== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40118== +==40118== For lists of detected and suppressed errors, rerun with: -s +==40118== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestOdeBasedCellCycleModels_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOdeBasedCellCycleModels_valgrind.txt new file mode 100644 index 000000000..e823ada26 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOdeBasedCellCycleModels_valgrind.txt @@ -0,0 +1,73 @@ +==25317== Memcheck, a memory error detector +==25317== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25317== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25317== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeBasedCellCycleModels -malloc_debug -malloc_dump -memory_info +==25317== Parent PID: 23903 +==25317== +==25317== +==25317== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25317== Open file descriptor 12: +==25317== at 0xEF9407D: pipe (pipe.c:29) +==25317== by 0x196AC07D: ??? +==25317== by 0x13C514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25317== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25317== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25317== by 0xD871D38: PetscInitialize (pinit.c:924) +==25317== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25317== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25317== by 0x1361D7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25317== by 0x12EF6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25317== by 0x131C2A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25317== by 0x131ACA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25317== by 0x132161: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25317== by 0x12B8A5: main (TestOdeBasedCellCycleModels.cpp:19) +==25317== +==25317== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25317== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25317== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25317== by 0xD71D822: ??? +==25317== by 0xD71D96F: ??? +==25317== by 0x13CF66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25317== by 0x13CF6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25317== by 0x13CAC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25317== by 0x13C512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25317== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25317== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25317== by 0xD871D38: PetscInitialize (pinit.c:924) +==25317== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25317== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25317== by 0x1361D7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25317== by 0x12EF6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25317== by 0x131C2A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25317== by 0x131ACA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25317== by 0x132161: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25317== by 0x12B8A5: main (TestOdeBasedCellCycleModels.cpp:19) +==25317== +==25317== Open file descriptor 115: +==25317== +==25317== +==25317== Open file descriptor 112: +==25317== +==25317== +==25317== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModels_valgrind.txt +==25317== +==25317== +==25317== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25317== +==25317== +==25317== +==25317== HEAP SUMMARY: +==25317== in use at exit: 618,295 bytes in 8,236 blocks +==25317== total heap usage: 4,179,304 allocs, 4,171,068 frees, 1,770,075,329 bytes allocated +==25317== +==25317== LEAK SUMMARY: +==25317== definitely lost: 0 bytes in 0 blocks +==25317== indirectly lost: 0 bytes in 0 blocks +==25317== possibly lost: 0 bytes in 0 blocks +==25317== still reachable: 72 bytes in 4 blocks +==25317== suppressed: 618,223 bytes in 8,232 blocks +==25317== Reachable blocks (those to which a pointer was found) are not shown. +==25317== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25317== +==25317== For lists of detected and suppressed errors, rerun with: -s +==25317== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2024-09-07_08-54-51/TestOdeBasedSrnModels_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOdeBasedSrnModels_valgrind.txt new file mode 100644 index 000000000..a89b2b9db --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOdeBasedSrnModels_valgrind.txt @@ -0,0 +1,73 @@ +==25326== Memcheck, a memory error detector +==25326== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25326== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25326== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeBasedSrnModels -malloc_debug -malloc_dump -memory_info +==25326== Parent PID: 23903 +==25326== +==25326== +==25326== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25326== Open file descriptor 12: +==25326== at 0xED5007D: pipe (pipe.c:29) +==25326== by 0x196AC07D: ??? +==25326== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25326== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25326== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25326== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25326== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25326== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25326== by 0x12E3B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25326== by 0x1272FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25326== by 0x129E8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25326== by 0x129D2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25326== by 0x12A3C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25326== by 0x125725: main (TestOdeBasedSrnModels.cpp:19) +==25326== +==25326== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25326== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25326== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25326== by 0xD4D9822: ??? +==25326== by 0xD4D996F: ??? +==25326== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25326== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25326== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25326== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25326== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25326== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25326== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25326== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25326== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25326== by 0x12E3B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25326== by 0x1272FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25326== by 0x129E8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25326== by 0x129D2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25326== by 0x12A3C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25326== by 0x125725: main (TestOdeBasedSrnModels.cpp:19) +==25326== +==25326== Open file descriptor 115: +==25326== +==25326== +==25326== Open file descriptor 112: +==25326== +==25326== +==25326== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedSrnModels_valgrind.txt +==25326== +==25326== +==25326== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25326== +==25326== +==25326== +==25326== HEAP SUMMARY: +==25326== in use at exit: 618,366 bytes in 8,240 blocks +==25326== total heap usage: 57,245 allocs, 49,005 frees, 1,339,479,748 bytes allocated +==25326== +==25326== LEAK SUMMARY: +==25326== definitely lost: 0 bytes in 0 blocks +==25326== indirectly lost: 0 bytes in 0 blocks +==25326== possibly lost: 0 bytes in 0 blocks +==25326== still reachable: 72 bytes in 4 blocks +==25326== suppressed: 618,294 bytes in 8,236 blocks +==25326== Reachable blocks (those to which a pointer was found) are not shown. +==25326== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25326== +==25326== For lists of detected and suppressed errors, rerun with: -s +==25326== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestOdeLinearSystemSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOdeLinearSystemSolver_valgrind.txt new file mode 100644 index 000000000..0969d3be2 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOdeLinearSystemSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25634== Memcheck, a memory error detector +==25634== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25634== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25634== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeLinearSystemSolver -malloc_debug -malloc_dump -memory_info +==25634== Parent PID: 23903 +==25634== +==25634== +==25634== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25634== Open file descriptor 12: +==25634== at 0xEC6607D: pipe (pipe.c:29) +==25634== by 0x196AD07D: ??? +==25634== by 0x14C8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25634== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25634== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25634== by 0xD659D38: PetscInitialize (pinit.c:924) +==25634== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25634== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25634== by 0x112010: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25634== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25634== by 0x1100A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25634== by 0x10FFA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25634== by 0x1105B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25634== by 0x10C555: main (TestOdeLinearSystemSolver.cpp:18) +==25634== +==25634== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25634== at 0xEC6AA1C: __open_nocancel (open64_nocancel.c:39) +==25634== by 0xEBEEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25634== by 0xE8E8822: ??? +==25634== by 0xE8E896F: ??? +==25634== by 0x14D306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25634== by 0x14D30938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25634== by 0x14CE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25634== by 0x14C8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25634== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25634== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25634== by 0xD659D38: PetscInitialize (pinit.c:924) +==25634== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25634== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25634== by 0x112010: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25634== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25634== by 0x1100A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25634== by 0x10FFA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25634== by 0x1105B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25634== by 0x10C555: main (TestOdeLinearSystemSolver.cpp:18) +==25634== +==25634== Open file descriptor 115: +==25634== +==25634== +==25634== Open file descriptor 112: +==25634== +==25634== +==25634== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeLinearSystemSolver_valgrind.txt +==25634== +==25634== +==25634== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25634== +==25634== +==25634== +==25634== HEAP SUMMARY: +==25634== in use at exit: 618,318 bytes in 8,238 blocks +==25634== total heap usage: 55,510 allocs, 47,272 frees, 1,339,626,477 bytes allocated +==25634== +==25634== LEAK SUMMARY: +==25634== definitely lost: 0 bytes in 0 blocks +==25634== indirectly lost: 0 bytes in 0 blocks +==25634== possibly lost: 0 bytes in 0 blocks +==25634== still reachable: 24 bytes in 2 blocks +==25634== suppressed: 618,294 bytes in 8,236 blocks +==25634== Reachable blocks (those to which a pointer was found) are not shown. +==25634== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25634== +==25634== For lists of detected and suppressed errors, rerun with: -s +==25634== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestOffLatticeCryptProjectionSimulation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOffLatticeCryptProjectionSimulation_valgrind.txt new file mode 100644 index 000000000..bb3689804 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOffLatticeCryptProjectionSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==40362== Memcheck, a memory error detector +==40362== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40362== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40362== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOffLatticeCryptProjectionSimulation -malloc_debug -malloc_dump -memory_info +==40362== Parent PID: 23903 +==40362== +==40362== +==40362== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40362== Open file descriptor 12: +==40362== at 0x1265707D: pipe (pipe.c:29) +==40362== by 0x1B36D07D: ??? +==40362== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40362== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40362== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40362== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40362== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40362== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40362== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40362== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40362== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40362== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40362== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40362== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) +==40362== +==40362== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40362== at 0x1265BA1C: __open_nocancel (open64_nocancel.c:39) +==40362== by 0x125DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40362== by 0x11D74822: ??? +==40362== by 0x11D7496F: ??? +==40362== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40362== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40362== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40362== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40362== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40362== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40362== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40362== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40362== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40362== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40362== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40362== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40362== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40362== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40362== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) +==40362== +==40362== Open file descriptor 115: +==40362== +==40362== +==40362== Open file descriptor 112: +==40362== +==40362== +==40362== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeCryptProjectionSimulation_valgrind.txt +==40362== +==40362== +==40362== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40362== +==40362== +==40362== +==40362== HEAP SUMMARY: +==40362== in use at exit: 618,366 bytes in 8,239 blocks +==40362== total heap usage: 1,343,531 allocs, 1,335,292 frees, 1,452,944,997 bytes allocated +==40362== +==40362== LEAK SUMMARY: +==40362== definitely lost: 0 bytes in 0 blocks +==40362== indirectly lost: 0 bytes in 0 blocks +==40362== possibly lost: 0 bytes in 0 blocks +==40362== still reachable: 56 bytes in 3 blocks +==40362== suppressed: 618,310 bytes in 8,236 blocks +==40362== Reachable blocks (those to which a pointer was found) are not shown. +==40362== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40362== +==40362== For lists of detected and suppressed errors, rerun with: -s +==40362== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestOffLatticeRandomFieldGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOffLatticeRandomFieldGenerator_valgrind.txt new file mode 100644 index 000000000..2c11e108e --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOffLatticeRandomFieldGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24787== Memcheck, a memory error detector +==24787== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24787== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24787== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestOffLatticeRandomFieldGenerator -malloc_debug -malloc_dump -memory_info +==24787== Parent PID: 23903 +==24787== +==24787== +==24787== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24787== Open file descriptor 12: +==24787== at 0x7E5307D: pipe (pipe.c:29) +==24787== by 0x100C307D: ??? +==24787== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24787== by 0x7AA2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24787== by 0x7A3BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24787== by 0x670FD38: PetscInitialize (pinit.c:924) +==24787== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24787== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24787== by 0x1256B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24787== by 0x121073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24787== by 0x123452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24787== by 0x12334D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24787== by 0x123961: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24787== by 0x11F875: main (TestOffLatticeRandomFieldGenerator.cpp:18) +==24787== +==24787== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24787== at 0x7E57A1C: __open_nocancel (open64_nocancel.c:39) +==24787== by 0x7DDBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24787== by 0x799E822: ??? +==24787== by 0x799E96F: ??? +==24787== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24787== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24787== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24787== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24787== by 0x7AA2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24787== by 0x7A3BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24787== by 0x670FD38: PetscInitialize (pinit.c:924) +==24787== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24787== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24787== by 0x1256B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24787== by 0x121073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24787== by 0x123452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24787== by 0x12334D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24787== by 0x123961: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24787== by 0x11F875: main (TestOffLatticeRandomFieldGenerator.cpp:18) +==24787== +==24787== Open file descriptor 115: +==24787== +==24787== +==24787== Open file descriptor 112: +==24787== +==24787== +==24787== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeRandomFieldGenerator_valgrind.txt +==24787== +==24787== +==24787== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24787== +==24787== +==24787== +==24787== HEAP SUMMARY: +==24787== in use at exit: 620,774 bytes in 8,239 blocks +==24787== total heap usage: 515,645 allocs, 507,406 frees, 1,362,756,430 bytes allocated +==24787== +==24787== LEAK SUMMARY: +==24787== definitely lost: 0 bytes in 0 blocks +==24787== indirectly lost: 0 bytes in 0 blocks +==24787== possibly lost: 0 bytes in 0 blocks +==24787== still reachable: 2,576 bytes in 3 blocks +==24787== suppressed: 618,198 bytes in 8,236 blocks +==24787== Reachable blocks (those to which a pointer was found) are not shown. +==24787== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24787== +==24787== For lists of detected and suppressed errors, rerun with: -s +==24787== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestOffLatticeSimulation3d_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOffLatticeSimulation3d_valgrind.txt new file mode 100644 index 000000000..092cd7719 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOffLatticeSimulation3d_valgrind.txt @@ -0,0 +1,73 @@ +==26380== Memcheck, a memory error detector +==26380== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26380== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26380== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info +==26380== Parent PID: 23903 +==26380== +==26380== +==26380== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26380== Open file descriptor 12: +==26380== at 0x10DD907D: pipe (pipe.c:29) +==26380== by 0x196AD07D: ??? +==26380== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26380== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26380== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26380== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26380== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26380== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26380== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26380== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26380== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26380== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26380== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26380== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) +==26380== +==26380== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26380== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==26380== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26380== by 0xF136822: ??? +==26380== by 0xF13696F: ??? +==26380== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26380== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26380== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26380== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26380== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26380== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26380== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26380== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26380== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26380== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26380== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26380== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26380== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26380== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26380== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) +==26380== +==26380== Open file descriptor 115: +==26380== +==26380== +==26380== Open file descriptor 112: +==26380== +==26380== +==26380== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt +==26380== +==26380== +==26380== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26380== +==26380== +==26380== +==26380== HEAP SUMMARY: +==26380== in use at exit: 618,350 bytes in 8,239 blocks +==26380== total heap usage: 853,795 allocs, 845,556 frees, 1,503,650,121 bytes allocated +==26380== +==26380== LEAK SUMMARY: +==26380== definitely lost: 0 bytes in 0 blocks +==26380== indirectly lost: 0 bytes in 0 blocks +==26380== possibly lost: 0 bytes in 0 blocks +==26380== still reachable: 56 bytes in 3 blocks +==26380== suppressed: 618,294 bytes in 8,236 blocks +==26380== Reachable blocks (those to which a pointer was found) are not shown. +==26380== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26380== +==26380== For lists of detected and suppressed errors, rerun with: -s +==26380== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestOffLatticeSimulationWithBuskeForces_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOffLatticeSimulationWithBuskeForces_valgrind.txt new file mode 100644 index 000000000..3ca241b5f --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOffLatticeSimulationWithBuskeForces_valgrind.txt @@ -0,0 +1,73 @@ +==26412== Memcheck, a memory error detector +==26412== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26412== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26412== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithBuskeForces -malloc_debug -malloc_dump -memory_info +==26412== Parent PID: 23903 +==26412== +==26412== +==26412== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26412== Open file descriptor 12: +==26412== at 0xF8E007D: pipe (pipe.c:29) +==26412== by 0x196AD07D: ??? +==26412== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26412== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26412== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26412== by 0x10210D38: PetscInitialize (pinit.c:924) +==26412== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26412== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26412== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26412== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26412== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26412== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26412== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26412== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) +==26412== +==26412== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26412== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==26412== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26412== by 0xF136822: ??? +==26412== by 0xF13696F: ??? +==26412== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26412== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26412== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26412== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26412== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26412== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26412== by 0x10210D38: PetscInitialize (pinit.c:924) +==26412== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26412== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26412== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26412== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26412== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26412== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26412== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26412== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) +==26412== +==26412== Open file descriptor 115: +==26412== +==26412== +==26412== Open file descriptor 112: +==26412== +==26412== +==26412== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithBuskeForces_valgrind.txt +==26412== +==26412== +==26412== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26412== +==26412== +==26412== +==26412== HEAP SUMMARY: +==26412== in use at exit: 618,279 bytes in 8,235 blocks +==26412== total heap usage: 3,593,545 allocs, 3,585,310 frees, 4,478,246,333 bytes allocated +==26412== +==26412== LEAK SUMMARY: +==26412== definitely lost: 0 bytes in 0 blocks +==26412== indirectly lost: 0 bytes in 0 blocks +==26412== possibly lost: 0 bytes in 0 blocks +==26412== still reachable: 56 bytes in 3 blocks +==26412== suppressed: 618,223 bytes in 8,232 blocks +==26412== Reachable blocks (those to which a pointer was found) are not shown. +==26412== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26412== +==26412== For lists of detected and suppressed errors, rerun with: -s +==26412== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt new file mode 100644 index 000000000..0b9fb5e22 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt @@ -0,0 +1,73 @@ +==26678== Memcheck, a memory error detector +==26678== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26678== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26678== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info +==26678== Parent PID: 23903 +==26678== +==26678== +==26678== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26678== Open file descriptor 12: +==26678== at 0xF8E007D: pipe (pipe.c:29) +==26678== by 0x196AD07D: ??? +==26678== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26678== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26678== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26678== by 0x10210D38: PetscInitialize (pinit.c:924) +==26678== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26678== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26678== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26678== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26678== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26678== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26678== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26678== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) +==26678== +==26678== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26678== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==26678== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26678== by 0xF136822: ??? +==26678== by 0xF13696F: ??? +==26678== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26678== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26678== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26678== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26678== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26678== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26678== by 0x10210D38: PetscInitialize (pinit.c:924) +==26678== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26678== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26678== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26678== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26678== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26678== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26678== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26678== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) +==26678== +==26678== Open file descriptor 115: +==26678== +==26678== +==26678== Open file descriptor 112: +==26678== +==26678== +==26678== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt +==26678== +==26678== +==26678== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26678== +==26678== +==26678== +==26678== HEAP SUMMARY: +==26678== in use at exit: 618,279 bytes in 8,235 blocks +==26678== total heap usage: 6,672,057 allocs, 6,663,822 frees, 8,995,229,404 bytes allocated +==26678== +==26678== LEAK SUMMARY: +==26678== definitely lost: 0 bytes in 0 blocks +==26678== indirectly lost: 0 bytes in 0 blocks +==26678== possibly lost: 0 bytes in 0 blocks +==26678== still reachable: 56 bytes in 3 blocks +==26678== suppressed: 618,223 bytes in 8,232 blocks +==26678== Reachable blocks (those to which a pointer was found) are not shown. +==26678== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26678== +==26678== For lists of detected and suppressed errors, rerun with: -s +==26678== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..5dea4e64b --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26514== Memcheck, a memory error detector +==26514== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26514== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26514== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26514== Parent PID: 23903 +==26514== +==26514== +==26514== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26514== Open file descriptor 12: +==26514== at 0xF92407D: pipe (pipe.c:29) +==26514== by 0x196AD07D: ??? +==26514== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26514== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26514== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26514== by 0x10210D38: PetscInitialize (pinit.c:924) +==26514== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26514== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26514== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26514== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26514== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26514== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26514== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26514== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) +==26514== +==26514== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26514== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==26514== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26514== by 0xF136822: ??? +==26514== by 0xF13696F: ??? +==26514== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26514== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26514== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26514== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26514== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26514== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26514== by 0x10210D38: PetscInitialize (pinit.c:924) +==26514== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26514== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26514== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26514== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26514== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26514== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26514== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26514== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) +==26514== +==26514== Open file descriptor 115: +==26514== +==26514== +==26514== Open file descriptor 112: +==26514== +==26514== +==26514== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt +==26514== +==26514== +==26514== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26514== +==26514== +==26514== +==26514== HEAP SUMMARY: +==26514== in use at exit: 618,311 bytes in 8,236 blocks +==26514== total heap usage: 17,826,378 allocs, 17,818,142 frees, 30,026,992,724 bytes allocated +==26514== +==26514== LEAK SUMMARY: +==26514== definitely lost: 0 bytes in 0 blocks +==26514== indirectly lost: 0 bytes in 0 blocks +==26514== possibly lost: 0 bytes in 0 blocks +==26514== still reachable: 88 bytes in 4 blocks +==26514== suppressed: 618,223 bytes in 8,232 blocks +==26514== Reachable blocks (those to which a pointer was found) are not shown. +==26514== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26514== +==26514== For lists of detected and suppressed errors, rerun with: -s +==26514== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestOffLatticeSimulationWithPdes_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOffLatticeSimulationWithPdes_valgrind.txt new file mode 100644 index 000000000..76dd74381 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOffLatticeSimulationWithPdes_valgrind.txt @@ -0,0 +1,73 @@ +==26862== Memcheck, a memory error detector +==26862== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26862== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26862== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info +==26862== Parent PID: 23903 +==26862== +==26862== +==26862== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26862== Open file descriptor 12: +==26862== at 0xFCC107D: pipe (pipe.c:29) +==26862== by 0x196AC07D: ??? +==26862== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26862== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26862== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26862== by 0x10210D38: PetscInitialize (pinit.c:924) +==26862== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26862== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26862== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26862== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26862== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26862== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26862== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26862== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) +==26862== +==26862== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26862== at 0xFCC5A1C: __open_nocancel (open64_nocancel.c:39) +==26862== by 0xFC49BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26862== by 0xF4D3822: ??? +==26862== by 0xF4D396F: ??? +==26862== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26862== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26862== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26862== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26862== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26862== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26862== by 0x10210D38: PetscInitialize (pinit.c:924) +==26862== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26862== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26862== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26862== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26862== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26862== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26862== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26862== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) +==26862== +==26862== Open file descriptor 115: +==26862== +==26862== +==26862== Open file descriptor 112: +==26862== +==26862== +==26862== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt +==26862== +==26862== +==26862== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26862== +==26862== +==26862== +==26862== HEAP SUMMARY: +==26862== in use at exit: 618,279 bytes in 8,235 blocks +==26862== total heap usage: 7,487,376 allocs, 7,479,141 frees, 2,641,934,648 bytes allocated +==26862== +==26862== LEAK SUMMARY: +==26862== definitely lost: 0 bytes in 0 blocks +==26862== indirectly lost: 0 bytes in 0 blocks +==26862== possibly lost: 0 bytes in 0 blocks +==26862== still reachable: 56 bytes in 3 blocks +==26862== suppressed: 618,223 bytes in 8,232 blocks +==26862== Reachable blocks (those to which a pointer was found) are not shown. +==26862== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26862== +==26862== For lists of detected and suppressed errors, rerun with: -s +==26862== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..91d932879 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==27073== Memcheck, a memory error detector +==27073== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==27073== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==27073== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==27073== Parent PID: 23903 +==27073== +==27073== +==27073== FILE DESCRIPTORS: 9 open (3 std) at exit. +==27073== Open file descriptor 12: +==27073== at 0x10DD907D: pipe (pipe.c:29) +==27073== by 0x196AD07D: ??? +==27073== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27073== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27073== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27073== by 0xF28AD38: PetscInitialize (pinit.c:924) +==27073== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27073== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27073== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==27073== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27073== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27073== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27073== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27073== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) +==27073== +==27073== Open file descriptor 8: /dev/shm/open_mpi.0000 +==27073== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==27073== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==27073== by 0xF136822: ??? +==27073== by 0xF13696F: ??? +==27073== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27073== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27073== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27073== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27073== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27073== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27073== by 0xF28AD38: PetscInitialize (pinit.c:924) +==27073== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27073== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27073== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==27073== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27073== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27073== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27073== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27073== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) +==27073== +==27073== Open file descriptor 115: +==27073== +==27073== +==27073== Open file descriptor 112: +==27073== +==27073== +==27073== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt +==27073== +==27073== +==27073== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==27073== +==27073== +==27073== +==27073== HEAP SUMMARY: +==27073== in use at exit: 618,279 bytes in 8,235 blocks +==27073== total heap usage: 9,703,046 allocs, 9,694,811 frees, 2,583,525,790 bytes allocated +==27073== +==27073== LEAK SUMMARY: +==27073== definitely lost: 0 bytes in 0 blocks +==27073== indirectly lost: 0 bytes in 0 blocks +==27073== possibly lost: 0 bytes in 0 blocks +==27073== still reachable: 56 bytes in 3 blocks +==27073== suppressed: 618,223 bytes in 8,232 blocks +==27073== Reachable blocks (those to which a pointer was found) are not shown. +==27073== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==27073== +==27073== For lists of detected and suppressed errors, rerun with: -s +==27073== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestOffLatticeSimulation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOffLatticeSimulation_valgrind.txt new file mode 100644 index 000000000..18e3faa64 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOffLatticeSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==26367== Memcheck, a memory error detector +==26367== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26367== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26367== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation -malloc_debug -malloc_dump -memory_info +==26367== Parent PID: 23903 +==26367== +==26367== +==26367== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26367== Open file descriptor 12: +==26367== at 0xF92407D: pipe (pipe.c:29) +==26367== by 0x196AD07D: ??? +==26367== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26367== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26367== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26367== by 0x10210D38: PetscInitialize (pinit.c:924) +==26367== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26367== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26367== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26367== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26367== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26367== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26367== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26367== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) +==26367== +==26367== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26367== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==26367== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26367== by 0xF136822: ??? +==26367== by 0xF13696F: ??? +==26367== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26367== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26367== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26367== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26367== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26367== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26367== by 0x10210D38: PetscInitialize (pinit.c:924) +==26367== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26367== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26367== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26367== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26367== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26367== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26367== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26367== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) +==26367== +==26367== Open file descriptor 115: +==26367== +==26367== +==26367== Open file descriptor 112: +==26367== +==26367== +==26367== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation_valgrind.txt +==26367== +==26367== +==26367== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26367== +==26367== +==26367== +==26367== HEAP SUMMARY: +==26367== in use at exit: 618,279 bytes in 8,235 blocks +==26367== total heap usage: 12,303,091 allocs, 12,294,856 frees, 3,798,134,089 bytes allocated +==26367== +==26367== LEAK SUMMARY: +==26367== definitely lost: 0 bytes in 0 blocks +==26367== indirectly lost: 0 bytes in 0 blocks +==26367== possibly lost: 0 bytes in 0 blocks +==26367== still reachable: 56 bytes in 3 blocks +==26367== suppressed: 618,223 bytes in 8,232 blocks +==26367== Reachable blocks (those to which a pointer was found) are not shown. +==26367== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26367== +==26367== For lists of detected and suppressed errors, rerun with: -s +==26367== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..bd9083dc4 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==27180== Memcheck, a memory error detector +==27180== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==27180== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==27180== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==27180== Parent PID: 23903 +==27180== +==27180== +==27180== FILE DESCRIPTORS: 9 open (3 std) at exit. +==27180== Open file descriptor 12: +==27180== at 0xFDA007D: pipe (pipe.c:29) +==27180== by 0x196AC07D: ??? +==27180== by 0x14DD84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27180== by 0x119FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27180== by 0x11995D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27180== by 0x1068CD38: PetscInitialize (pinit.c:924) +==27180== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27180== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27180== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27180== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27180== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27180== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27180== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27180== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) +==27180== +==27180== Open file descriptor 8: /dev/shm/open_mpi.0000 +==27180== at 0xFDA4A1C: __open_nocancel (open64_nocancel.c:39) +==27180== by 0xFD28BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==27180== by 0xF136822: ??? +==27180== by 0xF13696F: ??? +==27180== by 0x14E7D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27180== by 0x14E7D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27180== by 0x14E33922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27180== by 0x14DD82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27180== by 0x119FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27180== by 0x11995D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27180== by 0x1068CD38: PetscInitialize (pinit.c:924) +==27180== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27180== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27180== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27180== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27180== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27180== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27180== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27180== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) +==27180== +==27180== Open file descriptor 115: +==27180== +==27180== +==27180== Open file descriptor 112: +==27180== +==27180== +==27180== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt +==27180== +==27180== +==27180== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==27180== +==27180== +==27180== +==27180== HEAP SUMMARY: +==27180== in use at exit: 618,279 bytes in 8,235 blocks +==27180== total heap usage: 7,110,679 allocs, 7,102,444 frees, 8,072,008,041 bytes allocated +==27180== +==27180== LEAK SUMMARY: +==27180== definitely lost: 0 bytes in 0 blocks +==27180== indirectly lost: 0 bytes in 0 blocks +==27180== possibly lost: 0 bytes in 0 blocks +==27180== still reachable: 56 bytes in 3 blocks +==27180== suppressed: 618,223 bytes in 8,232 blocks +==27180== Reachable blocks (those to which a pointer was found) are not shown. +==27180== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==27180== +==27180== For lists of detected and suppressed errors, rerun with: -s +==27180== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestOnLatticeSimulationWithPdes_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOnLatticeSimulationWithPdes_valgrind.txt new file mode 100644 index 000000000..b0085c9e2 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOnLatticeSimulationWithPdes_valgrind.txt @@ -0,0 +1,73 @@ +==27946== Memcheck, a memory error detector +==27946== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==27946== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==27946== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info +==27946== Parent PID: 23903 +==27946== +==27946== +==27946== FILE DESCRIPTORS: 9 open (3 std) at exit. +==27946== Open file descriptor 12: +==27946== at 0xFC7F07D: pipe (pipe.c:29) +==27946== by 0x196AC07D: ??? +==27946== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27946== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27946== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27946== by 0x10210D38: PetscInitialize (pinit.c:924) +==27946== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27946== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27946== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27946== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27946== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27946== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27946== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27946== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) +==27946== +==27946== Open file descriptor 8: /dev/shm/open_mpi.0000 +==27946== at 0xFC83A1C: __open_nocancel (open64_nocancel.c:39) +==27946== by 0xFC07BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==27946== by 0xF4D3822: ??? +==27946== by 0xF4D396F: ??? +==27946== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27946== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27946== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27946== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27946== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27946== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27946== by 0x10210D38: PetscInitialize (pinit.c:924) +==27946== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27946== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27946== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27946== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27946== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27946== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27946== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27946== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) +==27946== +==27946== Open file descriptor 115: +==27946== +==27946== +==27946== Open file descriptor 112: +==27946== +==27946== +==27946== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt +==27946== +==27946== +==27946== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==27946== +==27946== +==27946== +==27946== HEAP SUMMARY: +==27946== in use at exit: 618,279 bytes in 8,235 blocks +==27946== total heap usage: 2,356,890 allocs, 2,348,655 frees, 1,775,836,326 bytes allocated +==27946== +==27946== LEAK SUMMARY: +==27946== definitely lost: 0 bytes in 0 blocks +==27946== indirectly lost: 0 bytes in 0 blocks +==27946== possibly lost: 0 bytes in 0 blocks +==27946== still reachable: 56 bytes in 3 blocks +==27946== suppressed: 618,223 bytes in 8,232 blocks +==27946== Reachable blocks (those to which a pointer was found) are not shown. +==27946== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==27946== +==27946== For lists of detected and suppressed errors, rerun with: -s +==27946== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..cadc6b354 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==37171== Memcheck, a memory error detector +==37171== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==37171== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==37171== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==37171== Parent PID: 23903 +==37171== +==37171== +==37171== FILE DESCRIPTORS: 9 open (3 std) at exit. +==37171== Open file descriptor 12: +==37171== at 0xF92407D: pipe (pipe.c:29) +==37171== by 0x196AD07D: ??? +==37171== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==37171== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37171== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37171== by 0x10210D38: PetscInitialize (pinit.c:924) +==37171== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==37171== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==37171== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==37171== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==37171== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==37171== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==37171== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==37171== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) +==37171== +==37171== Open file descriptor 8: /dev/shm/open_mpi.0000 +==37171== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==37171== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==37171== by 0xF136822: ??? +==37171== by 0xF13696F: ??? +==37171== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37171== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37171== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37171== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==37171== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37171== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37171== by 0x10210D38: PetscInitialize (pinit.c:924) +==37171== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==37171== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==37171== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==37171== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==37171== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==37171== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==37171== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==37171== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) +==37171== +==37171== Open file descriptor 115: +==37171== +==37171== +==37171== Open file descriptor 112: +==37171== +==37171== +==37171== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt +==37171== +==37171== +==37171== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==37171== +==37171== +==37171== +==37171== HEAP SUMMARY: +==37171== in use at exit: 618,295 bytes in 8,236 blocks +==37171== total heap usage: 11,682,197 allocs, 11,673,961 frees, 2,208,181,971 bytes allocated +==37171== +==37171== LEAK SUMMARY: +==37171== definitely lost: 0 bytes in 0 blocks +==37171== indirectly lost: 0 bytes in 0 blocks +==37171== possibly lost: 0 bytes in 0 blocks +==37171== still reachable: 72 bytes in 4 blocks +==37171== suppressed: 618,223 bytes in 8,232 blocks +==37171== Reachable blocks (those to which a pointer was found) are not shown. +==37171== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==37171== +==37171== For lists of detected and suppressed errors, rerun with: -s +==37171== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestOperatorSplittingMonodomainSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOperatorSplittingMonodomainSolver_valgrind.txt new file mode 100644 index 000000000..b9987576e --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOperatorSplittingMonodomainSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43276== Memcheck, a memory error detector +==43276== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43276== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43276== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestOperatorSplittingMonodomainSolver -malloc_debug -malloc_dump -memory_info +==43276== Parent PID: 23903 +==43276== +==43276== +==43276== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43276== Open file descriptor 12: +==43276== at 0xA75007D: pipe (pipe.c:29) +==43276== by 0x1432407D: ??? +==43276== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43276== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43276== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43276== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43276== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43276== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43276== by 0x1199B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43276== by 0x115213: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43276== by 0x1175A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43276== by 0x11749F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43276== by 0x117AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43276== by 0x113A15: main (TestOperatorSplittingMonodomainSolver.cpp:18) +==43276== +==43276== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43276== at 0xA754A1C: __open_nocancel (open64_nocancel.c:39) +==43276== by 0xA6D8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43276== by 0xA071822: ??? +==43276== by 0xA07196F: ??? +==43276== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43276== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43276== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43276== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43276== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43276== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43276== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43276== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43276== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43276== by 0x1199B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43276== by 0x115213: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43276== by 0x1175A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43276== by 0x11749F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43276== by 0x117AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43276== by 0x113A15: main (TestOperatorSplittingMonodomainSolver.cpp:18) +==43276== +==43276== Open file descriptor 115: +==43276== +==43276== +==43276== Open file descriptor 112: +==43276== +==43276== +==43276== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOperatorSplittingMonodomainSolver_valgrind.txt +==43276== +==43276== +==43276== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43276== +==43276== +==43276== +==43276== HEAP SUMMARY: +==43276== in use at exit: 618,814 bytes in 8,248 blocks +==43276== total heap usage: 81,700 allocs, 73,452 frees, 1,494,729,286 bytes allocated +==43276== +==43276== LEAK SUMMARY: +==43276== definitely lost: 0 bytes in 0 blocks +==43276== indirectly lost: 0 bytes in 0 blocks +==43276== possibly lost: 0 bytes in 0 blocks +==43276== still reachable: 24 bytes in 2 blocks +==43276== suppressed: 618,790 bytes in 8,246 blocks +==43276== Reachable blocks (those to which a pointer was found) are not shown. +==43276== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43276== +==43276== For lists of detected and suppressed errors, rerun with: -s +==43276== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2024-09-07_08-54-51/TestOutputDirectoryFifoQueue_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOutputDirectoryFifoQueue_valgrind.txt new file mode 100644 index 000000000..66eae1c1e --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOutputDirectoryFifoQueue_valgrind.txt @@ -0,0 +1,73 @@ +==24079== Memcheck, a memory error detector +==24079== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24079== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24079== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestOutputDirectoryFifoQueue -malloc_debug -malloc_dump -memory_info +==24079== Parent PID: 23903 +==24079== +==24079== +==24079== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24079== Open file descriptor 12: +==24079== at 0x4CB207D: pipe (pipe.c:29) +==24079== by 0xAEA507D: ??? +==24079== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24079== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24079== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24079== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24079== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24079== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24079== by 0x114118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24079== by 0x10FF93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24079== by 0x1121E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24079== by 0x1120DD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24079== by 0x1126F1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24079== by 0x10E795: main (TestOutputDirectoryFifoQueue.cpp:18) +==24079== +==24079== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24079== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24079== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24079== by 0x4934822: ??? +==24079== by 0x493496F: ??? +==24079== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24079== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24079== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24079== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24079== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24079== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24079== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24079== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24079== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24079== by 0x114118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24079== by 0x10FF93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24079== by 0x1121E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24079== by 0x1120DD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24079== by 0x1126F1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24079== by 0x10E795: main (TestOutputDirectoryFifoQueue.cpp:18) +==24079== +==24079== Open file descriptor 115: +==24079== +==24079== +==24079== Open file descriptor 112: +==24079== +==24079== +==24079== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOutputDirectoryFifoQueue_valgrind.txt +==24079== +==24079== +==24079== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24079== +==24079== +==24079== +==24079== HEAP SUMMARY: +==24079== in use at exit: 617,838 bytes in 8,238 blocks +==24079== total heap usage: 45,613 allocs, 37,375 frees, 1,338,679,124 bytes allocated +==24079== +==24079== LEAK SUMMARY: +==24079== definitely lost: 0 bytes in 0 blocks +==24079== indirectly lost: 0 bytes in 0 blocks +==24079== possibly lost: 0 bytes in 0 blocks +==24079== still reachable: 24 bytes in 2 blocks +==24079== suppressed: 617,814 bytes in 8,236 blocks +==24079== Reachable blocks (those to which a pointer was found) are not shown. +==24079== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24079== +==24079== For lists of detected and suppressed errors, rerun with: -s +==24079== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestOutputFileHandler_valgrind.txt b/log-files/2024-09-07_08-54-51/TestOutputFileHandler_valgrind.txt new file mode 100644 index 000000000..322dd01fa --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestOutputFileHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24080== Memcheck, a memory error detector +==24080== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24080== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24080== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestOutputFileHandler -malloc_debug -malloc_dump -memory_info +==24080== Parent PID: 23903 +==24080== +==24080== +==24080== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24080== Open file descriptor 12: +==24080== at 0x4CB207D: pipe (pipe.c:29) +==24080== by 0xAEA507D: ??? +==24080== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24080== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24080== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24080== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24080== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24080== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24080== by 0x11718A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24080== by 0x1128AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24080== by 0x11514C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24080== by 0x114FEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24080== by 0x115683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24080== by 0x110CD5: main (TestOutputFileHandler.cpp:19) +==24080== +==24080== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24080== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24080== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24080== by 0x4934822: ??? +==24080== by 0x493496F: ??? +==24080== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24080== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24080== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24080== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24080== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24080== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24080== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24080== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24080== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24080== by 0x11718A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24080== by 0x1128AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24080== by 0x11514C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24080== by 0x114FEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24080== by 0x115683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24080== by 0x110CD5: main (TestOutputFileHandler.cpp:19) +==24080== +==24080== Open file descriptor 115: +==24080== +==24080== +==24080== Open file descriptor 112: +==24080== +==24080== +==24080== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOutputFileHandler_valgrind.txt +==24080== +==24080== +==24080== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24080== +==24080== +==24080== +==24080== HEAP SUMMARY: +==24080== in use at exit: 617,838 bytes in 8,238 blocks +==24080== total heap usage: 46,516 allocs, 38,278 frees, 1,339,257,045 bytes allocated +==24080== +==24080== LEAK SUMMARY: +==24080== definitely lost: 0 bytes in 0 blocks +==24080== indirectly lost: 0 bytes in 0 blocks +==24080== possibly lost: 0 bytes in 0 blocks +==24080== still reachable: 24 bytes in 2 blocks +==24080== suppressed: 617,814 bytes in 8,236 blocks +==24080== Reachable blocks (those to which a pointer was found) are not shown. +==24080== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24080== +==24080== For lists of detected and suppressed errors, rerun with: -s +==24080== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestPCBlockDiagonal_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPCBlockDiagonal_valgrind.txt new file mode 100644 index 000000000..4344b90cd --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPCBlockDiagonal_valgrind.txt @@ -0,0 +1,73 @@ +==24250== Memcheck, a memory error detector +==24250== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24250== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24250== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCBlockDiagonal -malloc_debug -malloc_dump -memory_info +==24250== Parent PID: 23903 +==24250== +==24250== +==24250== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24250== Open file descriptor 12: +==24250== at 0x60C107D: pipe (pipe.c:29) +==24250== by 0xAF3907D: ??? +==24250== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24250== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24250== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24250== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24250== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24250== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24250== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24250== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24250== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24250== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24250== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24250== by 0x10D995: main (TestPCBlockDiagonal.cpp:18) +==24250== +==24250== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24250== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24250== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24250== by 0x5D41822: ??? +==24250== by 0x5D4196F: ??? +==24250== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24250== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24250== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24250== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24250== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24250== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24250== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24250== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24250== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24250== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24250== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24250== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24250== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24250== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24250== by 0x10D995: main (TestPCBlockDiagonal.cpp:18) +==24250== +==24250== Open file descriptor 115: +==24250== +==24250== +==24250== Open file descriptor 112: +==24250== +==24250== +==24250== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCBlockDiagonal_valgrind.txt +==24250== +==24250== +==24250== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24250== +==24250== +==24250== +==24250== HEAP SUMMARY: +==24250== in use at exit: 617,870 bytes in 8,239 blocks +==24250== total heap usage: 56,333 allocs, 48,094 frees, 1,364,706,879 bytes allocated +==24250== +==24250== LEAK SUMMARY: +==24250== definitely lost: 0 bytes in 0 blocks +==24250== indirectly lost: 0 bytes in 0 blocks +==24250== possibly lost: 0 bytes in 0 blocks +==24250== still reachable: 40 bytes in 3 blocks +==24250== suppressed: 617,830 bytes in 8,236 blocks +==24250== Reachable blocks (those to which a pointer was found) are not shown. +==24250== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24250== +==24250== For lists of detected and suppressed errors, rerun with: -s +==24250== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestPCLDUFactorisation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPCLDUFactorisation_valgrind.txt new file mode 100644 index 000000000..1b154cd94 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPCLDUFactorisation_valgrind.txt @@ -0,0 +1,73 @@ +==24255== Memcheck, a memory error detector +==24255== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24255== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24255== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCLDUFactorisation -malloc_debug -malloc_dump -memory_info +==24255== Parent PID: 23903 +==24255== +==24255== +==24255== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24255== Open file descriptor 12: +==24255== at 0x60C107D: pipe (pipe.c:29) +==24255== by 0xAF3907D: ??? +==24255== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24255== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24255== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24255== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24255== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24255== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24255== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24255== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24255== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24255== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24255== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24255== by 0x10D995: main (TestPCLDUFactorisation.cpp:18) +==24255== +==24255== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24255== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24255== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24255== by 0x5D41822: ??? +==24255== by 0x5D4196F: ??? +==24255== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24255== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24255== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24255== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24255== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24255== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24255== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24255== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24255== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24255== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24255== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24255== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24255== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24255== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24255== by 0x10D995: main (TestPCLDUFactorisation.cpp:18) +==24255== +==24255== Open file descriptor 115: +==24255== +==24255== +==24255== Open file descriptor 112: +==24255== +==24255== +==24255== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCLDUFactorisation_valgrind.txt +==24255== +==24255== +==24255== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24255== +==24255== +==24255== +==24255== HEAP SUMMARY: +==24255== in use at exit: 617,870 bytes in 8,239 blocks +==24255== total heap usage: 57,130 allocs, 48,891 frees, 1,365,677,610 bytes allocated +==24255== +==24255== LEAK SUMMARY: +==24255== definitely lost: 0 bytes in 0 blocks +==24255== indirectly lost: 0 bytes in 0 blocks +==24255== possibly lost: 0 bytes in 0 blocks +==24255== still reachable: 40 bytes in 3 blocks +==24255== suppressed: 617,830 bytes in 8,236 blocks +==24255== Reachable blocks (those to which a pointer was found) are not shown. +==24255== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24255== +==24255== For lists of detected and suppressed errors, rerun with: -s +==24255== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestPCTwoLevelsBlockDiagonal_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPCTwoLevelsBlockDiagonal_valgrind.txt new file mode 100644 index 000000000..b0d16be65 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPCTwoLevelsBlockDiagonal_valgrind.txt @@ -0,0 +1,73 @@ +==24263== Memcheck, a memory error detector +==24263== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24263== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24263== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCTwoLevelsBlockDiagonal -malloc_debug -malloc_dump -memory_info +==24263== Parent PID: 23903 +==24263== +==24263== +==24263== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24263== Open file descriptor 12: +==24263== at 0x60C107D: pipe (pipe.c:29) +==24263== by 0xAF3907D: ??? +==24263== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24263== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24263== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24263== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24263== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24263== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24263== by 0x114A0E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24263== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24263== by 0x1127C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24263== by 0x1126C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24263== by 0x112CD5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24263== by 0x10EA95: main (TestPCTwoLevelsBlockDiagonal.cpp:18) +==24263== +==24263== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24263== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24263== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24263== by 0x5D41822: ??? +==24263== by 0x5D4196F: ??? +==24263== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24263== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24263== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24263== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24263== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24263== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24263== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24263== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24263== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24263== by 0x114A0E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24263== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24263== by 0x1127C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24263== by 0x1126C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24263== by 0x112CD5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24263== by 0x10EA95: main (TestPCTwoLevelsBlockDiagonal.cpp:18) +==24263== +==24263== Open file descriptor 115: +==24263== +==24263== +==24263== Open file descriptor 112: +==24263== +==24263== +==24263== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCTwoLevelsBlockDiagonal_valgrind.txt +==24263== +==24263== +==24263== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24263== +==24263== +==24263== +==24263== HEAP SUMMARY: +==24263== in use at exit: 617,870 bytes in 8,239 blocks +==24263== total heap usage: 76,512 allocs, 68,273 frees, 1,345,540,484 bytes allocated +==24263== +==24263== LEAK SUMMARY: +==24263== definitely lost: 0 bytes in 0 blocks +==24263== indirectly lost: 0 bytes in 0 blocks +==24263== possibly lost: 0 bytes in 0 blocks +==24263== still reachable: 40 bytes in 3 blocks +==24263== suppressed: 617,830 bytes in 8,236 blocks +==24263== Reachable blocks (those to which a pointer was found) are not shown. +==24263== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24263== +==24263== For lists of detected and suppressed errors, rerun with: -s +==24263== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestPapillaryFibreCalculator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPapillaryFibreCalculator_valgrind.txt new file mode 100644 index 000000000..187486ac2 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPapillaryFibreCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==41204== Memcheck, a memory error detector +==41204== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41204== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41204== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPapillaryFibreCalculator -malloc_debug -malloc_dump -memory_info +==41204== Parent PID: 23903 +==41204== +==41204== +==41204== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41204== Open file descriptor 115: +==41204== +==41204== +==41204== Open file descriptor 112: +==41204== +==41204== +==41204== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPapillaryFibreCalculator_valgrind.txt +==41204== +==41204== +==41204== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41204== +==41204== +==41204== +==41204== HEAP SUMMARY: +==41204== in use at exit: 24 bytes in 2 blocks +==41204== total heap usage: 7,291 allocs, 7,289 frees, 1,074,336 bytes allocated +==41204== +==41204== LEAK SUMMARY: +==41204== definitely lost: 0 bytes in 0 blocks +==41204== indirectly lost: 0 bytes in 0 blocks +==41204== possibly lost: 0 bytes in 0 blocks +==41204== still reachable: 24 bytes in 2 blocks +==41204== suppressed: 0 bytes in 0 blocks +==41204== Reachable blocks (those to which a pointer was found) are not shown. +==41204== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41204== +==41204== For lists of detected and suppressed errors, rerun with: -s +==41204== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-07_08-54-51/TestParabolicBoxDomainPdeModifier_valgrind.txt b/log-files/2024-09-07_08-54-51/TestParabolicBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..da1f02fa8 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestParabolicBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25406== Memcheck, a memory error detector +==25406== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25406== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25406== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParabolicBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25406== Parent PID: 23903 +==25406== +==25406== +==25406== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25406== Open file descriptor 12: +==25406== at 0x1108F07D: pipe (pipe.c:29) +==25406== by 0x196AC07D: ??? +==25406== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25406== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25406== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25406== by 0xF627D38: PetscInitialize (pinit.c:924) +==25406== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25406== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25406== by 0x133C67: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25406== by 0x12E57D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25406== by 0x13121C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25406== by 0x1310BC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25406== by 0x131753: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25406== by 0x12C9A5: main (TestParabolicBoxDomainPdeModifier.cpp:19) +==25406== +==25406== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25406== at 0x11093A1C: __open_nocancel (open64_nocancel.c:39) +==25406== by 0x11017BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25406== by 0xF4D3822: ??? +==25406== by 0xF4D396F: ??? +==25406== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25406== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25406== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25406== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25406== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25406== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25406== by 0xF627D38: PetscInitialize (pinit.c:924) +==25406== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25406== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25406== by 0x133C67: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25406== by 0x12E57D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25406== by 0x13121C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25406== by 0x1310BC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25406== by 0x131753: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25406== by 0x12C9A5: main (TestParabolicBoxDomainPdeModifier.cpp:19) +==25406== +==25406== Open file descriptor 115: +==25406== +==25406== +==25406== Open file descriptor 112: +==25406== +==25406== +==25406== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParabolicBoxDomainPdeModifier_valgrind.txt +==25406== +==25406== +==25406== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25406== +==25406== +==25406== +==25406== HEAP SUMMARY: +==25406== in use at exit: 618,279 bytes in 8,235 blocks +==25406== total heap usage: 2,607,145 allocs, 2,598,910 frees, 1,618,354,887 bytes allocated +==25406== +==25406== LEAK SUMMARY: +==25406== definitely lost: 0 bytes in 0 blocks +==25406== indirectly lost: 0 bytes in 0 blocks +==25406== possibly lost: 0 bytes in 0 blocks +==25406== still reachable: 56 bytes in 3 blocks +==25406== suppressed: 618,223 bytes in 8,232 blocks +==25406== Reachable blocks (those to which a pointer was found) are not shown. +==25406== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25406== +==25406== For lists of detected and suppressed errors, rerun with: -s +==25406== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestParabolicGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-09-07_08-54-51/TestParabolicGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..39eb81dc5 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestParabolicGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25415== Memcheck, a memory error detector +==25415== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25415== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25415== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParabolicGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25415== Parent PID: 23903 +==25415== +==25415== +==25415== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25415== Open file descriptor 12: +==25415== at 0x1117607D: pipe (pipe.c:29) +==25415== by 0x196AC07D: ??? +==25415== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25415== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25415== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25415== by 0xF627D38: PetscInitialize (pinit.c:924) +==25415== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25415== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25415== by 0x1396A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25415== by 0x13395D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25415== by 0x136826: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25415== by 0x1366C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25415== by 0x136D5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25415== by 0x131D85: main (TestParabolicGrowingDomainPdeModifier.cpp:19) +==25415== +==25415== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25415== at 0x1117AA1C: __open_nocancel (open64_nocancel.c:39) +==25415== by 0x110FEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25415== by 0xF4D3822: ??? +==25415== by 0xF4D396F: ??? +==25415== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25415== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25415== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25415== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25415== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25415== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25415== by 0xF627D38: PetscInitialize (pinit.c:924) +==25415== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25415== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25415== by 0x1396A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25415== by 0x13395D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25415== by 0x136826: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25415== by 0x1366C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25415== by 0x136D5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25415== by 0x131D85: main (TestParabolicGrowingDomainPdeModifier.cpp:19) +==25415== +==25415== Open file descriptor 115: +==25415== +==25415== +==25415== Open file descriptor 112: +==25415== +==25415== +==25415== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParabolicGrowingDomainPdeModifier_valgrind.txt +==25415== +==25415== +==25415== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25415== +==25415== +==25415== +==25415== HEAP SUMMARY: +==25415== in use at exit: 618,279 bytes in 8,235 blocks +==25415== total heap usage: 7,057,264 allocs, 7,049,029 frees, 1,809,463,885 bytes allocated +==25415== +==25415== LEAK SUMMARY: +==25415== definitely lost: 0 bytes in 0 blocks +==25415== indirectly lost: 0 bytes in 0 blocks +==25415== possibly lost: 0 bytes in 0 blocks +==25415== still reachable: 56 bytes in 3 blocks +==25415== suppressed: 618,223 bytes in 8,232 blocks +==25415== Reachable blocks (those to which a pointer was found) are not shown. +==25415== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25415== +==25415== For lists of detected and suppressed errors, rerun with: -s +==25415== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestParallelCellsGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestParallelCellsGenerator_valgrind.txt new file mode 100644 index 000000000..6d2c545c6 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestParallelCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==25340== Memcheck, a memory error detector +==25340== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25340== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25340== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParallelCellsGenerator -malloc_debug -malloc_dump -memory_info +==25340== Parent PID: 23903 +==25340== +==25340== +==25340== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25340== Open file descriptor 12: +==25340== at 0x10CB007D: pipe (pipe.c:29) +==25340== by 0x196AD07D: ??? +==25340== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25340== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25340== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25340== by 0xF225D38: PetscInitialize (pinit.c:924) +==25340== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25340== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25340== by 0x123D94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25340== by 0x11ED1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25340== by 0x1216E0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25340== by 0x121580: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25340== by 0x121C17: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25340== by 0x11D0F5: main (TestParallelCellsGenerator.cpp:19) +==25340== +==25340== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25340== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==25340== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25340== by 0x104B4822: ??? +==25340== by 0x104B496F: ??? +==25340== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25340== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25340== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25340== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25340== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25340== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25340== by 0xF225D38: PetscInitialize (pinit.c:924) +==25340== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25340== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25340== by 0x123D94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25340== by 0x11ED1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25340== by 0x1216E0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25340== by 0x121580: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25340== by 0x121C17: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25340== by 0x11D0F5: main (TestParallelCellsGenerator.cpp:19) +==25340== +==25340== Open file descriptor 115: +==25340== +==25340== +==25340== Open file descriptor 112: +==25340== +==25340== +==25340== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelCellsGenerator_valgrind.txt +==25340== +==25340== +==25340== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25340== +==25340== +==25340== +==25340== HEAP SUMMARY: +==25340== in use at exit: 618,414 bytes in 8,240 blocks +==25340== total heap usage: 54,341 allocs, 46,101 frees, 1,339,090,993 bytes allocated +==25340== +==25340== LEAK SUMMARY: +==25340== definitely lost: 0 bytes in 0 blocks +==25340== indirectly lost: 0 bytes in 0 blocks +==25340== possibly lost: 0 bytes in 0 blocks +==25340== still reachable: 120 bytes in 4 blocks +==25340== suppressed: 618,294 bytes in 8,236 blocks +==25340== Reachable blocks (those to which a pointer was found) are not shown. +==25340== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25340== +==25340== For lists of detected and suppressed errors, rerun with: -s +==25340== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestParallelColumnDataReaderWriter_valgrind.txt b/log-files/2024-09-07_08-54-51/TestParallelColumnDataReaderWriter_valgrind.txt new file mode 100644 index 000000000..d84b8798d --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestParallelColumnDataReaderWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24181== Memcheck, a memory error detector +==24181== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24181== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24181== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestParallelColumnDataReaderWriter -malloc_debug -malloc_dump -memory_info +==24181== Parent PID: 23903 +==24181== +==24181== +==24181== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24181== Open file descriptor 12: +==24181== at 0x60A507D: pipe (pipe.c:29) +==24181== by 0xAF1807D: ??? +==24181== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24181== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24181== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24181== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24181== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24181== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24181== by 0x11B354: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24181== by 0x114A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24181== by 0x1174D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24181== by 0x117378: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24181== by 0x117A0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24181== by 0x112E75: main (TestParallelColumnDataReaderWriter.cpp:19) +==24181== +==24181== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24181== at 0x60A9A1C: __open_nocancel (open64_nocancel.c:39) +==24181== by 0x602DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24181== by 0x5D25822: ??? +==24181== by 0x5D2596F: ??? +==24181== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24181== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24181== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24181== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24181== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24181== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24181== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24181== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24181== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24181== by 0x11B354: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24181== by 0x114A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24181== by 0x1174D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24181== by 0x117378: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24181== by 0x117A0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24181== by 0x112E75: main (TestParallelColumnDataReaderWriter.cpp:19) +==24181== +==24181== Open file descriptor 115: +==24181== +==24181== +==24181== Open file descriptor 112: +==24181== +==24181== +==24181== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelColumnDataReaderWriter_valgrind.txt +==24181== +==24181== +==24181== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24181== +==24181== +==24181== +==24181== HEAP SUMMARY: +==24181== in use at exit: 617,854 bytes in 8,238 blocks +==24181== total heap usage: 46,058 allocs, 37,820 frees, 1,338,788,692 bytes allocated +==24181== +==24181== LEAK SUMMARY: +==24181== definitely lost: 0 bytes in 0 blocks +==24181== indirectly lost: 0 bytes in 0 blocks +==24181== possibly lost: 0 bytes in 0 blocks +==24181== still reachable: 24 bytes in 2 blocks +==24181== suppressed: 617,830 bytes in 8,236 blocks +==24181== Reachable blocks (those to which a pointer was found) are not shown. +==24181== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24181== +==24181== For lists of detected and suppressed errors, rerun with: -s +==24181== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestParallelWriterPerformance_valgrind.txt b/log-files/2024-09-07_08-54-51/TestParallelWriterPerformance_valgrind.txt new file mode 100644 index 000000000..828d27f65 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestParallelWriterPerformance_valgrind.txt @@ -0,0 +1,73 @@ +==24187== Memcheck, a memory error detector +==24187== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24187== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24187== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestParallelWriterPerformance -malloc_debug -malloc_dump -memory_info +==24187== Parent PID: 23903 +==24187== +==24187== +==24187== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24187== Open file descriptor 12: +==24187== at 0x60A507D: pipe (pipe.c:29) +==24187== by 0xAF1807D: ??? +==24187== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24187== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24187== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24187== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24187== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24187== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24187== by 0x11316C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24187== by 0x10F013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24187== by 0x111202: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24187== by 0x1110FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24187== by 0x111711: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24187== by 0x10D815: main (TestParallelWriterPerformance.cpp:18) +==24187== +==24187== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24187== at 0x60A9A1C: __open_nocancel (open64_nocancel.c:39) +==24187== by 0x602DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24187== by 0x5D25822: ??? +==24187== by 0x5D2596F: ??? +==24187== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24187== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24187== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24187== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24187== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24187== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24187== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24187== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24187== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24187== by 0x11316C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24187== by 0x10F013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24187== by 0x111202: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24187== by 0x1110FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24187== by 0x111711: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24187== by 0x10D815: main (TestParallelWriterPerformance.cpp:18) +==24187== +==24187== Open file descriptor 115: +==24187== +==24187== +==24187== Open file descriptor 112: +==24187== +==24187== +==24187== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelWriterPerformance_valgrind.txt +==24187== +==24187== +==24187== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24187== +==24187== +==24187== +==24187== HEAP SUMMARY: +==24187== in use at exit: 617,854 bytes in 8,238 blocks +==24187== total heap usage: 45,428 allocs, 37,190 frees, 1,338,448,652 bytes allocated +==24187== +==24187== LEAK SUMMARY: +==24187== definitely lost: 0 bytes in 0 blocks +==24187== indirectly lost: 0 bytes in 0 blocks +==24187== possibly lost: 0 bytes in 0 blocks +==24187== still reachable: 24 bytes in 2 blocks +==24187== suppressed: 617,830 bytes in 8,236 blocks +==24187== Reachable blocks (those to which a pointer was found) are not shown. +==24187== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24187== +==24187== For lists of detected and suppressed errors, rerun with: -s +==24187== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestPdeSimulationTime_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPdeSimulationTime_valgrind.txt new file mode 100644 index 000000000..483ba2610 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPdeSimulationTime_valgrind.txt @@ -0,0 +1,73 @@ +==25108== Memcheck, a memory error detector +==25108== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25108== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25108== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestPdeSimulationTime -malloc_debug -malloc_dump -memory_info +==25108== Parent PID: 23903 +==25108== +==25108== +==25108== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25108== Open file descriptor 12: +==25108== at 0x505107D: pipe (pipe.c:29) +==25108== by 0x104D507D: ??? +==25108== by 0xC31D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25108== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25108== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25108== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25108== by 0x4C971D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25108== by 0x4C97227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25108== by 0x111E6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25108== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25108== by 0x10FF34: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25108== by 0x10FE2F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25108== by 0x110443: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25108== by 0x10C415: main (TestPdeSimulationTime.cpp:18) +==25108== +==25108== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25108== at 0x5055A1C: __open_nocancel (open64_nocancel.c:39) +==25108== by 0x4FD9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25108== by 0x4CD1822: ??? +==25108== by 0x4CD196F: ??? +==25108== by 0xC3C26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25108== by 0xC3C2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25108== by 0xC378922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25108== by 0xC31D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25108== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25108== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25108== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25108== by 0x4C971D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25108== by 0x4C97227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25108== by 0x111E6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25108== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25108== by 0x10FF34: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25108== by 0x10FE2F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25108== by 0x110443: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25108== by 0x10C415: main (TestPdeSimulationTime.cpp:18) +==25108== +==25108== Open file descriptor 115: +==25108== +==25108== +==25108== Open file descriptor 112: +==25108== +==25108== +==25108== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPdeSimulationTime_valgrind.txt +==25108== +==25108== +==25108== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25108== +==25108== +==25108== +==25108== HEAP SUMMARY: +==25108== in use at exit: 618,254 bytes in 8,238 blocks +==25108== total heap usage: 47,331 allocs, 39,093 frees, 1,338,384,353 bytes allocated +==25108== +==25108== LEAK SUMMARY: +==25108== definitely lost: 0 bytes in 0 blocks +==25108== indirectly lost: 0 bytes in 0 blocks +==25108== possibly lost: 0 bytes in 0 blocks +==25108== still reachable: 24 bytes in 2 blocks +==25108== suppressed: 618,230 bytes in 8,236 blocks +==25108== Reachable blocks (those to which a pointer was found) are not shown. +==25108== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25108== +==25108== For lists of detected and suppressed errors, rerun with: -s +==25108== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestPdeTestClasses_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPdeTestClasses_valgrind.txt new file mode 100644 index 000000000..62e6621c8 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPdeTestClasses_valgrind.txt @@ -0,0 +1,73 @@ +==24959== Memcheck, a memory error detector +==24959== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24959== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24959== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestPdeTestClasses -malloc_debug -malloc_dump -memory_info +==24959== Parent PID: 23903 +==24959== +==24959== +==24959== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24959== Open file descriptor 12: +==24959== at 0x6A3807D: pipe (pipe.c:29) +==24959== by 0x100C307D: ??? +==24959== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24959== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24959== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24959== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==24959== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24959== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24959== by 0x13051E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24959== by 0x12BAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24959== by 0x12E0E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24959== by 0x12DFE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24959== by 0x12E5F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24959== by 0x12A2F5: main (TestPdeTestClasses.cpp:18) +==24959== +==24959== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24959== at 0x6A3CA1C: __open_nocancel (open64_nocancel.c:39) +==24959== by 0x69C0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24959== by 0x658F822: ??? +==24959== by 0x658F96F: ??? +==24959== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24959== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24959== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24959== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24959== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24959== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24959== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==24959== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24959== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24959== by 0x13051E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24959== by 0x12BAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24959== by 0x12E0E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24959== by 0x12DFE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24959== by 0x12E5F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24959== by 0x12A2F5: main (TestPdeTestClasses.cpp:18) +==24959== +==24959== Open file descriptor 115: +==24959== +==24959== +==24959== Open file descriptor 112: +==24959== +==24959== +==24959== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPdeTestClasses_valgrind.txt +==24959== +==24959== +==24959== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24959== +==24959== +==24959== +==24959== HEAP SUMMARY: +==24959== in use at exit: 618,222 bytes in 8,238 blocks +==24959== total heap usage: 47,535 allocs, 39,297 frees, 1,338,440,975 bytes allocated +==24959== +==24959== LEAK SUMMARY: +==24959== definitely lost: 0 bytes in 0 blocks +==24959== indirectly lost: 0 bytes in 0 blocks +==24959== possibly lost: 0 bytes in 0 blocks +==24959== still reachable: 24 bytes in 2 blocks +==24959== suppressed: 618,198 bytes in 8,236 blocks +==24959== Reachable blocks (those to which a pointer was found) are not shown. +==24959== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24959== +==24959== For lists of detected and suppressed errors, rerun with: -s +==24959== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestPerElementWriter_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPerElementWriter_valgrind.txt new file mode 100644 index 000000000..65467d979 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPerElementWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24602== Memcheck, a memory error detector +==24602== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24602== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24602== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestPerElementWriter -malloc_debug -malloc_dump -memory_info +==24602== Parent PID: 23903 +==24602== +==24602== +==24602== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24602== Open file descriptor 12: +==24602== at 0x810907D: pipe (pipe.c:29) +==24602== by 0x100C307D: ??? +==24602== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24602== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24602== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24602== by 0x667ED38: PetscInitialize (pinit.c:924) +==24602== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24602== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24602== by 0x118F70: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24602== by 0x113759: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24602== by 0x115E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24602== by 0x115D21: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24602== by 0x116335: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24602== by 0x111E15: main (TestPerElementWriter.cpp:18) +==24602== +==24602== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24602== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24602== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24602== by 0x790D822: ??? +==24602== by 0x790D96F: ??? +==24602== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24602== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24602== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24602== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24602== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24602== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24602== by 0x667ED38: PetscInitialize (pinit.c:924) +==24602== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24602== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24602== by 0x118F70: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24602== by 0x113759: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24602== by 0x115E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24602== by 0x115D21: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24602== by 0x116335: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24602== by 0x111E15: main (TestPerElementWriter.cpp:18) +==24602== +==24602== Open file descriptor 115: +==24602== +==24602== +==24602== Open file descriptor 112: +==24602== +==24602== +==24602== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPerElementWriter_valgrind.txt +==24602== +==24602== +==24602== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24602== +==24602== +==24602== +==24602== HEAP SUMMARY: +==24602== in use at exit: 618,222 bytes in 8,238 blocks +==24602== total heap usage: 52,931 allocs, 44,693 frees, 1,338,983,223 bytes allocated +==24602== +==24602== LEAK SUMMARY: +==24602== definitely lost: 0 bytes in 0 blocks +==24602== indirectly lost: 0 bytes in 0 blocks +==24602== possibly lost: 0 bytes in 0 blocks +==24602== still reachable: 24 bytes in 2 blocks +==24602== suppressed: 618,198 bytes in 8,236 blocks +==24602== Reachable blocks (those to which a pointer was found) are not shown. +==24602== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24602== +==24602== For lists of detected and suppressed errors, rerun with: -s +==24602== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt new file mode 100644 index 000000000..7e3a6c375 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt @@ -0,0 +1,73 @@ +==26016== Memcheck, a memory error detector +==26016== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26016== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26016== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPeriodicNodeBasedCellPopulationParallelMethods -malloc_debug -malloc_dump -memory_info +==26016== Parent PID: 23903 +==26016== +==26016== +==26016== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26016== Open file descriptor 12: +==26016== at 0xF8E007D: pipe (pipe.c:29) +==26016== by 0x196AD07D: ??? +==26016== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26016== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26016== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26016== by 0x10210D38: PetscInitialize (pinit.c:924) +==26016== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26016== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26016== by 0x12B4BA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26016== by 0x1266B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26016== by 0x128CBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26016== by 0x128BBA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26016== by 0x1291CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26016== by 0x124EB5: main (TestPeriodicNodeBasedCellPopulationParallelMethods.cpp:18) +==26016== +==26016== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26016== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==26016== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26016== by 0xF136822: ??? +==26016== by 0xF13696F: ??? +==26016== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26016== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26016== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26016== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26016== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26016== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26016== by 0x10210D38: PetscInitialize (pinit.c:924) +==26016== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26016== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26016== by 0x12B4BA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26016== by 0x1266B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26016== by 0x128CBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26016== by 0x128BBA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26016== by 0x1291CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26016== by 0x124EB5: main (TestPeriodicNodeBasedCellPopulationParallelMethods.cpp:18) +==26016== +==26016== Open file descriptor 115: +==26016== +==26016== +==26016== Open file descriptor 112: +==26016== +==26016== +==26016== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt +==26016== +==26016== +==26016== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26016== +==26016== +==26016== +==26016== HEAP SUMMARY: +==26016== in use at exit: 618,350 bytes in 8,239 blocks +==26016== total heap usage: 53,079 allocs, 44,840 frees, 1,338,902,881 bytes allocated +==26016== +==26016== LEAK SUMMARY: +==26016== definitely lost: 0 bytes in 0 blocks +==26016== indirectly lost: 0 bytes in 0 blocks +==26016== possibly lost: 0 bytes in 0 blocks +==26016== still reachable: 56 bytes in 3 blocks +==26016== suppressed: 618,294 bytes in 8,236 blocks +==26016== Reachable blocks (those to which a pointer was found) are not shown. +==26016== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26016== +==26016== For lists of detected and suppressed errors, rerun with: -s +==26016== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestPeriodicNodesOnlyMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPeriodicNodesOnlyMesh_valgrind.txt new file mode 100644 index 000000000..a22b28b50 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPeriodicNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24523== Memcheck, a memory error detector +==24523== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24523== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24523== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestPeriodicNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==24523== Parent PID: 23903 +==24523== +==24523== +==24523== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24523== Open file descriptor 12: +==24523== at 0x6D7D07D: pipe (pipe.c:29) +==24523== by 0x100C507D: ??? +==24523== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24523== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24523== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24523== by 0x7017D38: PetscInitialize (pinit.c:924) +==24523== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24523== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24523== by 0x1300A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24523== by 0x12AC9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24523== by 0x12DA8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24523== by 0x12D92C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24523== by 0x12DFC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24523== by 0x1290C5: main (TestPeriodicNodesOnlyMesh.cpp:19) +==24523== +==24523== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24523== at 0x6D81A1C: __open_nocancel (open64_nocancel.c:39) +==24523== by 0x6D05BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24523== by 0x658F822: ??? +==24523== by 0x658F96F: ??? +==24523== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24523== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24523== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24523== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24523== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24523== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24523== by 0x7017D38: PetscInitialize (pinit.c:924) +==24523== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24523== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24523== by 0x1300A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24523== by 0x12AC9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24523== by 0x12DA8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24523== by 0x12D92C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24523== by 0x12DFC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24523== by 0x1290C5: main (TestPeriodicNodesOnlyMesh.cpp:19) +==24523== +==24523== Open file descriptor 115: +==24523== +==24523== +==24523== Open file descriptor 112: +==24523== +==24523== +==24523== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPeriodicNodesOnlyMesh_valgrind.txt +==24523== +==24523== +==24523== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24523== +==24523== +==24523== +==24523== HEAP SUMMARY: +==24523== in use at exit: 618,222 bytes in 8,238 blocks +==24523== total heap usage: 57,944 allocs, 49,706 frees, 1,341,005,005 bytes allocated +==24523== +==24523== LEAK SUMMARY: +==24523== definitely lost: 0 bytes in 0 blocks +==24523== indirectly lost: 0 bytes in 0 blocks +==24523== possibly lost: 0 bytes in 0 blocks +==24523== still reachable: 24 bytes in 2 blocks +==24523== suppressed: 618,198 bytes in 8,236 blocks +==24523== Reachable blocks (those to which a pointer was found) are not shown. +==24523== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24523== +==24523== For lists of detected and suppressed errors, rerun with: -s +==24523== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestPetscEvents_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPetscEvents_valgrind.txt new file mode 100644 index 000000000..a2e83de39 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPetscEvents_valgrind.txt @@ -0,0 +1,73 @@ +==24081== Memcheck, a memory error detector +==24081== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24081== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24081== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscEvents -malloc_debug -malloc_dump -memory_info +==24081== Parent PID: 23903 +==24081== +==24081== +==24081== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24081== Open file descriptor 12: +==24081== at 0x603207D: pipe (pipe.c:29) +==24081== by 0xAEA507D: ??? +==24081== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24081== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24081== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24081== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24081== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24081== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24081== by 0x110C5A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24081== by 0x10CB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24081== by 0x10ED24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24081== by 0x10EC20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24081== by 0x10F233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24081== by 0x10B375: main (TestPetscEvents.cpp:18) +==24081== +==24081== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24081== at 0x6036A1C: __open_nocancel (open64_nocancel.c:39) +==24081== by 0x5FBABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24081== by 0x5CB2822: ??? +==24081== by 0x5CB296F: ??? +==24081== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24081== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24081== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24081== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24081== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24081== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24081== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24081== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24081== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24081== by 0x110C5A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24081== by 0x10CB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24081== by 0x10ED24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24081== by 0x10EC20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24081== by 0x10F233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24081== by 0x10B375: main (TestPetscEvents.cpp:18) +==24081== +==24081== Open file descriptor 115: +==24081== +==24081== +==24081== Open file descriptor 112: +==24081== +==24081== +==24081== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscEvents_valgrind.txt +==24081== +==24081== +==24081== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24081== +==24081== +==24081== +==24081== HEAP SUMMARY: +==24081== in use at exit: 617,838 bytes in 8,238 blocks +==24081== total heap usage: 44,913 allocs, 36,675 frees, 1,338,159,174 bytes allocated +==24081== +==24081== LEAK SUMMARY: +==24081== definitely lost: 0 bytes in 0 blocks +==24081== indirectly lost: 0 bytes in 0 blocks +==24081== possibly lost: 0 bytes in 0 blocks +==24081== still reachable: 24 bytes in 2 blocks +==24081== suppressed: 617,814 bytes in 8,236 blocks +==24081== Reachable blocks (those to which a pointer was found) are not shown. +==24081== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24081== +==24081== For lists of detected and suppressed errors, rerun with: -s +==24081== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestPetscMatTools_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPetscMatTools_valgrind.txt new file mode 100644 index 000000000..02a0c0122 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPetscMatTools_valgrind.txt @@ -0,0 +1,73 @@ +==24237== Memcheck, a memory error detector +==24237== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24237== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24237== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPetscMatTools -malloc_debug -malloc_dump -memory_info +==24237== Parent PID: 23903 +==24237== +==24237== +==24237== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24237== Open file descriptor 12: +==24237== at 0x60C107D: pipe (pipe.c:29) +==24237== by 0xAF3907D: ??? +==24237== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24237== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24237== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24237== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24237== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24237== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24237== by 0x114148: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24237== by 0x10FD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24237== by 0x1121C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24237== by 0x1120BF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24237== by 0x1126D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24237== by 0x10E555: main (TestPetscMatTools.cpp:18) +==24237== +==24237== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24237== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24237== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24237== by 0x5D41822: ??? +==24237== by 0x5D4196F: ??? +==24237== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24237== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24237== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24237== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24237== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24237== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24237== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24237== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24237== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24237== by 0x114148: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24237== by 0x10FD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24237== by 0x1121C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24237== by 0x1120BF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24237== by 0x1126D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24237== by 0x10E555: main (TestPetscMatTools.cpp:18) +==24237== +==24237== Open file descriptor 115: +==24237== +==24237== +==24237== Open file descriptor 112: +==24237== +==24237== +==24237== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscMatTools_valgrind.txt +==24237== +==24237== +==24237== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24237== +==24237== +==24237== +==24237== HEAP SUMMARY: +==24237== in use at exit: 617,854 bytes in 8,238 blocks +==24237== total heap usage: 46,918 allocs, 38,680 frees, 1,338,407,903 bytes allocated +==24237== +==24237== LEAK SUMMARY: +==24237== definitely lost: 0 bytes in 0 blocks +==24237== indirectly lost: 0 bytes in 0 blocks +==24237== possibly lost: 0 bytes in 0 blocks +==24237== still reachable: 24 bytes in 2 blocks +==24237== suppressed: 617,830 bytes in 8,236 blocks +==24237== Reachable blocks (those to which a pointer was found) are not shown. +==24237== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24237== +==24237== For lists of detected and suppressed errors, rerun with: -s +==24237== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestPetscSetup_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPetscSetup_valgrind.txt new file mode 100644 index 000000000..6935e00e8 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPetscSetup_valgrind.txt @@ -0,0 +1,73 @@ +==24101== Memcheck, a memory error detector +==24101== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24101== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24101== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscSetup -malloc_debug -malloc_dump -memory_info +==24101== Parent PID: 23903 +==24101== +==24101== +==24101== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24101== Open file descriptor 12: +==24101== at 0x603207D: pipe (pipe.c:29) +==24101== by 0xAEA507D: ??? +==24101== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24101== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24101== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24101== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24101== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24101== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24101== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24101== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24101== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24101== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24101== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24101== by 0x10D8B5: main (TestPetscSetup.cpp:19) +==24101== +==24101== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24101== at 0x6036A1C: __open_nocancel (open64_nocancel.c:39) +==24101== by 0x5FBABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24101== by 0x5CB2822: ??? +==24101== by 0x5CB296F: ??? +==24101== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24101== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24101== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24101== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24101== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24101== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24101== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24101== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24101== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24101== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24101== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24101== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24101== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24101== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24101== by 0x10D8B5: main (TestPetscSetup.cpp:19) +==24101== +==24101== Open file descriptor 115: +==24101== +==24101== +==24101== Open file descriptor 112: +==24101== +==24101== +==24101== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscSetup_valgrind.txt +==24101== +==24101== +==24101== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24101== +==24101== +==24101== +==24101== HEAP SUMMARY: +==24101== in use at exit: 617,838 bytes in 8,238 blocks +==24101== total heap usage: 45,266 allocs, 37,028 frees, 1,338,216,676 bytes allocated +==24101== +==24101== LEAK SUMMARY: +==24101== definitely lost: 0 bytes in 0 blocks +==24101== indirectly lost: 0 bytes in 0 blocks +==24101== possibly lost: 0 bytes in 0 blocks +==24101== still reachable: 24 bytes in 2 blocks +==24101== suppressed: 617,814 bytes in 8,236 blocks +==24101== Reachable blocks (those to which a pointer was found) are not shown. +==24101== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24101== +==24101== For lists of detected and suppressed errors, rerun with: -s +==24101== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestPetscTools2_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPetscTools2_valgrind.txt new file mode 100644 index 000000000..fe6381cc2 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPetscTools2_valgrind.txt @@ -0,0 +1,36 @@ +==24103== Memcheck, a memory error detector +==24103== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24103== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24103== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscTools2 -malloc_debug -malloc_dump -memory_info +==24103== Parent PID: 23903 +==24103== +==24103== +==24103== FILE DESCRIPTORS: 7 open (3 std) at exit. +==24103== Open file descriptor 115: +==24103== +==24103== +==24103== Open file descriptor 112: +==24103== +==24103== +==24103== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscTools2_valgrind.txt +==24103== +==24103== +==24103== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24103== +==24103== +==24103== +==24103== HEAP SUMMARY: +==24103== in use at exit: 24 bytes in 2 blocks +==24103== total heap usage: 3,070 allocs, 3,068 frees, 350,741 bytes allocated +==24103== +==24103== LEAK SUMMARY: +==24103== definitely lost: 0 bytes in 0 blocks +==24103== indirectly lost: 0 bytes in 0 blocks +==24103== possibly lost: 0 bytes in 0 blocks +==24103== still reachable: 24 bytes in 2 blocks +==24103== suppressed: 0 bytes in 0 blocks +==24103== Reachable blocks (those to which a pointer was found) are not shown. +==24103== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24103== +==24103== For lists of detected and suppressed errors, rerun with: -s +==24103== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-07_08-54-51/TestPetscTools_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPetscTools_valgrind.txt new file mode 100644 index 000000000..7a92645cd --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPetscTools_valgrind.txt @@ -0,0 +1,73 @@ +==24102== Memcheck, a memory error detector +==24102== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24102== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24102== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscTools -malloc_debug -malloc_dump -memory_info +==24102== Parent PID: 23903 +==24102== +==24102== +==24102== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24102== Open file descriptor 12: +==24102== at 0x616907D: pipe (pipe.c:29) +==24102== by 0xAEA507D: ??? +==24102== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24102== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24102== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24102== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24102== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24102== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24102== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24102== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24102== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24102== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24102== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24102== by 0x110FB5: main (TestPetscTools.cpp:19) +==24102== +==24102== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24102== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24102== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24102== by 0x5CB2822: ??? +==24102== by 0x5CB296F: ??? +==24102== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24102== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24102== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24102== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24102== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24102== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24102== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24102== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24102== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24102== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24102== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24102== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24102== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24102== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24102== by 0x110FB5: main (TestPetscTools.cpp:19) +==24102== +==24102== Open file descriptor 115: +==24102== +==24102== +==24102== Open file descriptor 112: +==24102== +==24102== +==24102== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscTools_valgrind.txt +==24102== +==24102== +==24102== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24102== +==24102== +==24102== +==24102== HEAP SUMMARY: +==24102== in use at exit: 617,838 bytes in 8,238 blocks +==24102== total heap usage: 47,877 allocs, 39,639 frees, 1,338,865,178 bytes allocated +==24102== +==24102== LEAK SUMMARY: +==24102== definitely lost: 0 bytes in 0 blocks +==24102== indirectly lost: 0 bytes in 0 blocks +==24102== possibly lost: 0 bytes in 0 blocks +==24102== still reachable: 24 bytes in 2 blocks +==24102== suppressed: 617,814 bytes in 8,236 blocks +==24102== Reachable blocks (those to which a pointer was found) are not shown. +==24102== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24102== +==24102== For lists of detected and suppressed errors, rerun with: -s +==24102== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestPetscVecTools_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPetscVecTools_valgrind.txt new file mode 100644 index 000000000..e7ab0e7e9 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPetscVecTools_valgrind.txt @@ -0,0 +1,73 @@ +==24238== Memcheck, a memory error detector +==24238== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24238== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24238== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPetscVecTools -malloc_debug -malloc_dump -memory_info +==24238== Parent PID: 23903 +==24238== +==24238== +==24238== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24238== Open file descriptor 12: +==24238== at 0x60C107D: pipe (pipe.c:29) +==24238== by 0xAF3907D: ??? +==24238== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24238== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24238== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24238== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24238== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24238== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24238== by 0x1121EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24238== by 0x10DD73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24238== by 0x11016A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24238== by 0x110065: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24238== by 0x110679: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24238== by 0x10C575: main (TestPetscVecTools.cpp:18) +==24238== +==24238== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24238== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24238== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24238== by 0x5D41822: ??? +==24238== by 0x5D4196F: ??? +==24238== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24238== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24238== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24238== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24238== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24238== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24238== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24238== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24238== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24238== by 0x1121EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24238== by 0x10DD73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24238== by 0x11016A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24238== by 0x110065: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24238== by 0x110679: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24238== by 0x10C575: main (TestPetscVecTools.cpp:18) +==24238== +==24238== Open file descriptor 115: +==24238== +==24238== +==24238== Open file descriptor 112: +==24238== +==24238== +==24238== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscVecTools_valgrind.txt +==24238== +==24238== +==24238== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24238== +==24238== +==24238== +==24238== HEAP SUMMARY: +==24238== in use at exit: 617,854 bytes in 8,238 blocks +==24238== total heap usage: 45,464 allocs, 37,226 frees, 1,338,258,612 bytes allocated +==24238== +==24238== LEAK SUMMARY: +==24238== definitely lost: 0 bytes in 0 blocks +==24238== indirectly lost: 0 bytes in 0 blocks +==24238== possibly lost: 0 bytes in 0 blocks +==24238== still reachable: 24 bytes in 2 blocks +==24238== suppressed: 617,830 bytes in 8,236 blocks +==24238== Reachable blocks (those to which a pointer was found) are not shown. +==24238== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24238== +==24238== For lists of detected and suppressed errors, rerun with: -s +==24238== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestPlaneStimulusCellFactory_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPlaneStimulusCellFactory_valgrind.txt new file mode 100644 index 000000000..85e3fc7be --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPlaneStimulusCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==43381== Memcheck, a memory error detector +==43381== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43381== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43381== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPlaneStimulusCellFactory -malloc_debug -malloc_dump -memory_info +==43381== Parent PID: 23903 +==43381== +==43381== +==43381== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43381== Open file descriptor 12: +==43381== at 0xBC0507D: pipe (pipe.c:29) +==43381== by 0x1432407D: ??? +==43381== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43381== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43381== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43381== by 0xA160D38: PetscInitialize (pinit.c:924) +==43381== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43381== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43381== by 0x12063D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43381== by 0x11B96D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43381== by 0x11E212: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43381== by 0x11E0B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43381== by 0x11E749: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43381== by 0x119D95: main (TestPlaneStimulusCellFactory.cpp:19) +==43381== +==43381== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43381== at 0xBC09A1C: __open_nocancel (open64_nocancel.c:39) +==43381== by 0xBB8DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43381== by 0xB3EF822: ??? +==43381== by 0xB3EF96F: ??? +==43381== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43381== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43381== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43381== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43381== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43381== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43381== by 0xA160D38: PetscInitialize (pinit.c:924) +==43381== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43381== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43381== by 0x12063D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43381== by 0x11B96D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43381== by 0x11E212: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43381== by 0x11E0B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43381== by 0x11E749: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43381== by 0x119D95: main (TestPlaneStimulusCellFactory.cpp:19) +==43381== +==43381== Open file descriptor 115: +==43381== +==43381== +==43381== Open file descriptor 112: +==43381== +==43381== +==43381== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPlaneStimulusCellFactory_valgrind.txt +==43381== +==43381== +==43381== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43381== +==43381== +==43381== +==43381== HEAP SUMMARY: +==43381== in use at exit: 618,334 bytes in 8,238 blocks +==43381== total heap usage: 82,004 allocs, 73,766 frees, 1,343,193,199 bytes allocated +==43381== +==43381== LEAK SUMMARY: +==43381== definitely lost: 0 bytes in 0 blocks +==43381== indirectly lost: 0 bytes in 0 blocks +==43381== possibly lost: 0 bytes in 0 blocks +==43381== still reachable: 24 bytes in 2 blocks +==43381== suppressed: 618,310 bytes in 8,236 blocks +==43381== Reachable blocks (those to which a pointer was found) are not shown. +==43381== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43381== +==43381== For lists of detected and suppressed errors, rerun with: -s +==43381== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestPostProcessingWriter_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPostProcessingWriter_valgrind.txt new file mode 100644 index 000000000..c19cec7b7 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPostProcessingWriter_valgrind.txt @@ -0,0 +1,73 @@ +==43317== Memcheck, a memory error detector +==43317== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43317== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43317== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPostProcessingWriter -malloc_debug -malloc_dump -memory_info +==43317== Parent PID: 23903 +==43317== +==43317== +==43317== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43317== Open file descriptor 12: +==43317== at 0xBF6D07D: pipe (pipe.c:29) +==43317== by 0x1432407D: ??? +==43317== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43317== by 0xC2EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43317== by 0xC283D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43317== by 0xA601D38: PetscInitialize (pinit.c:924) +==43317== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43317== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43317== by 0x127348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43317== by 0x1210D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43317== by 0x123BD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43317== by 0x123AD3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43317== by 0x1240E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43317== by 0x11F8D5: main (TestPostProcessingWriter.cpp:18) +==43317== +==43317== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43317== at 0xBF71A1C: __open_nocancel (open64_nocancel.c:39) +==43317== by 0xBEF5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43317== by 0xB890822: ??? +==43317== by 0xB89096F: ??? +==43317== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43317== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43317== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43317== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43317== by 0xC2EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43317== by 0xC283D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43317== by 0xA601D38: PetscInitialize (pinit.c:924) +==43317== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43317== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43317== by 0x127348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43317== by 0x1210D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43317== by 0x123BD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43317== by 0x123AD3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43317== by 0x1240E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43317== by 0x11F8D5: main (TestPostProcessingWriter.cpp:18) +==43317== +==43317== Open file descriptor 115: +==43317== +==43317== +==43317== Open file descriptor 112: +==43317== +==43317== +==43317== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPostProcessingWriter_valgrind.txt +==43317== +==43317== +==43317== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43317== +==43317== +==43317== +==43317== HEAP SUMMARY: +==43317== in use at exit: 618,743 bytes in 8,244 blocks +==43317== total heap usage: 10,863,094 allocs, 10,854,850 frees, 11,717,759,301 bytes allocated +==43317== +==43317== LEAK SUMMARY: +==43317== definitely lost: 0 bytes in 0 blocks +==43317== indirectly lost: 0 bytes in 0 blocks +==43317== possibly lost: 0 bytes in 0 blocks +==43317== still reachable: 24 bytes in 2 blocks +==43317== suppressed: 618,719 bytes in 8,242 blocks +==43317== Reachable blocks (those to which a pointer was found) are not shown. +==43317== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43317== +==43317== For lists of detected and suppressed errors, rerun with: -s +==43317== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 101 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestPottsBasedCellPopulation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPottsBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..3da03dfd4 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPottsBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26017== Memcheck, a memory error detector +==26017== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26017== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26017== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26017== Parent PID: 23903 +==26017== +==26017== +==26017== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26017== Open file descriptor 12: +==26017== at 0x10DD907D: pipe (pipe.c:29) +==26017== by 0x196AD07D: ??? +==26017== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26017== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26017== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26017== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26017== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26017== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26017== by 0x16AB57: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26017== by 0x162E49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26017== by 0x166190: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26017== by 0x166030: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26017== by 0x1666C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26017== by 0x161265: main (TestPottsBasedCellPopulation.cpp:19) +==26017== +==26017== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26017== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==26017== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26017== by 0xF136822: ??? +==26017== by 0xF13696F: ??? +==26017== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26017== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26017== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26017== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26017== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26017== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26017== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26017== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26017== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26017== by 0x16AB57: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26017== by 0x162E49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26017== by 0x166190: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26017== by 0x166030: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26017== by 0x1666C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26017== by 0x161265: main (TestPottsBasedCellPopulation.cpp:19) +==26017== +==26017== Open file descriptor 115: +==26017== +==26017== +==26017== Open file descriptor 112: +==26017== +==26017== +==26017== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsBasedCellPopulation_valgrind.txt +==26017== +==26017== +==26017== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26017== +==26017== +==26017== +==26017== HEAP SUMMARY: +==26017== in use at exit: 618,350 bytes in 8,239 blocks +==26017== total heap usage: 74,949 allocs, 66,710 frees, 1,343,982,515 bytes allocated +==26017== +==26017== LEAK SUMMARY: +==26017== definitely lost: 0 bytes in 0 blocks +==26017== indirectly lost: 0 bytes in 0 blocks +==26017== possibly lost: 0 bytes in 0 blocks +==26017== still reachable: 56 bytes in 3 blocks +==26017== suppressed: 618,294 bytes in 8,236 blocks +==26017== Reachable blocks (those to which a pointer was found) are not shown. +==26017== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26017== +==26017== For lists of detected and suppressed errors, rerun with: -s +==26017== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestPottsBasedCryptSimulation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPottsBasedCryptSimulation_valgrind.txt new file mode 100644 index 000000000..a6d9d1659 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPottsBasedCryptSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==40606== Memcheck, a memory error detector +==40606== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40606== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40606== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestPottsBasedCryptSimulation -malloc_debug -malloc_dump -memory_info +==40606== Parent PID: 23903 +==40606== +==40606== +==40606== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40606== Open file descriptor 12: +==40606== at 0x110B907D: pipe (pipe.c:29) +==40606== by 0x1B36F07D: ??? +==40606== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40606== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40606== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40606== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40606== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40606== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40606== by 0x122076: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40606== by 0x11D6B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40606== by 0x11FAA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40606== by 0x11F9A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40606== by 0x11FFB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40606== by 0x11BEB5: main (TestPottsBasedCryptSimulation.cpp:18) +==40606== +==40606== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40606== at 0x110BDA1C: __open_nocancel (open64_nocancel.c:39) +==40606== by 0x11041BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40606== by 0x109F6822: ??? +==40606== by 0x109F696F: ??? +==40606== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40606== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40606== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40606== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40606== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40606== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40606== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40606== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40606== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40606== by 0x122076: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40606== by 0x11D6B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40606== by 0x11FAA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40606== by 0x11F9A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40606== by 0x11FFB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40606== by 0x11BEB5: main (TestPottsBasedCryptSimulation.cpp:18) +==40606== +==40606== Open file descriptor 115: +==40606== +==40606== +==40606== Open file descriptor 112: +==40606== +==40606== +==40606== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsBasedCryptSimulation_valgrind.txt +==40606== +==40606== +==40606== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40606== +==40606== +==40606== +==40606== HEAP SUMMARY: +==40606== in use at exit: 618,375 bytes in 8,236 blocks +==40606== total heap usage: 46,840,255 allocs, 46,832,019 frees, 5,592,611,072 bytes allocated +==40606== +==40606== LEAK SUMMARY: +==40606== definitely lost: 0 bytes in 0 blocks +==40606== indirectly lost: 0 bytes in 0 blocks +==40606== possibly lost: 0 bytes in 0 blocks +==40606== still reachable: 136 bytes in 4 blocks +==40606== suppressed: 618,239 bytes in 8,232 blocks +==40606== Reachable blocks (those to which a pointer was found) are not shown. +==40606== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40606== +==40606== For lists of detected and suppressed errors, rerun with: -s +==40606== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestPottsElement_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPottsElement_valgrind.txt new file mode 100644 index 000000000..7b8cd162d --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPottsElement_valgrind.txt @@ -0,0 +1,73 @@ +==25675== Memcheck, a memory error detector +==25675== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25675== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25675== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsElement -malloc_debug -malloc_dump -memory_info +==25675== Parent PID: 23903 +==25675== +==25675== +==25675== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25675== Open file descriptor 12: +==25675== at 0xF4B407D: pipe (pipe.c:29) +==25675== by 0x196AD07D: ??? +==25675== by 0x14C664CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25675== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25675== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25675== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25675== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25675== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25675== by 0x11A5B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25675== by 0x115A6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25675== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25675== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25675== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25675== by 0x113E95: main (TestPottsElement.cpp:19) +==25675== +==25675== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25675== at 0xF4B8A1C: __open_nocancel (open64_nocancel.c:39) +==25675== by 0xF43CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25675== by 0xF136822: ??? +==25675== by 0xF13696F: ??? +==25675== by 0x14D0B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25675== by 0x14D0B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25675== by 0x14CC1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25675== by 0x14C662DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25675== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25675== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25675== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25675== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25675== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25675== by 0x11A5B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25675== by 0x115A6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25675== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25675== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25675== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25675== by 0x113E95: main (TestPottsElement.cpp:19) +==25675== +==25675== Open file descriptor 115: +==25675== +==25675== +==25675== Open file descriptor 112: +==25675== +==25675== +==25675== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsElement_valgrind.txt +==25675== +==25675== +==25675== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25675== +==25675== +==25675== +==25675== HEAP SUMMARY: +==25675== in use at exit: 618,318 bytes in 8,238 blocks +==25675== total heap usage: 53,131 allocs, 44,893 frees, 1,338,896,908 bytes allocated +==25675== +==25675== LEAK SUMMARY: +==25675== definitely lost: 0 bytes in 0 blocks +==25675== indirectly lost: 0 bytes in 0 blocks +==25675== possibly lost: 0 bytes in 0 blocks +==25675== still reachable: 24 bytes in 2 blocks +==25675== suppressed: 618,294 bytes in 8,236 blocks +==25675== Reachable blocks (those to which a pointer was found) are not shown. +==25675== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25675== +==25675== For lists of detected and suppressed errors, rerun with: -s +==25675== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestPottsMeshGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPottsMeshGenerator_valgrind.txt new file mode 100644 index 000000000..25a508001 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPottsMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==25726== Memcheck, a memory error detector +==25726== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25726== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25726== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshGenerator -malloc_debug -malloc_dump -memory_info +==25726== Parent PID: 23903 +==25726== +==25726== +==25726== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25726== Open file descriptor 12: +==25726== at 0xF4B407D: pipe (pipe.c:29) +==25726== by 0x196AD07D: ??? +==25726== by 0x14C664CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25726== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25726== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25726== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25726== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25726== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25726== by 0x118EF2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25726== by 0x1145AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25726== by 0x116DAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25726== by 0x116C4D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25726== by 0x1172E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25726== by 0x1129D5: main (TestPottsMeshGenerator.cpp:19) +==25726== +==25726== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25726== at 0xF4B8A1C: __open_nocancel (open64_nocancel.c:39) +==25726== by 0xF43CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25726== by 0xF136822: ??? +==25726== by 0xF13696F: ??? +==25726== by 0x14D0B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25726== by 0x14D0B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25726== by 0x14CC1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25726== by 0x14C662DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25726== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25726== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25726== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25726== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25726== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25726== by 0x118EF2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25726== by 0x1145AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25726== by 0x116DAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25726== by 0x116C4D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25726== by 0x1172E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25726== by 0x1129D5: main (TestPottsMeshGenerator.cpp:19) +==25726== +==25726== Open file descriptor 115: +==25726== +==25726== +==25726== Open file descriptor 112: +==25726== +==25726== +==25726== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshGenerator_valgrind.txt +==25726== +==25726== +==25726== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25726== +==25726== +==25726== +==25726== HEAP SUMMARY: +==25726== in use at exit: 618,318 bytes in 8,238 blocks +==25726== total heap usage: 154,740 allocs, 146,502 frees, 1,343,496,899 bytes allocated +==25726== +==25726== LEAK SUMMARY: +==25726== definitely lost: 0 bytes in 0 blocks +==25726== indirectly lost: 0 bytes in 0 blocks +==25726== possibly lost: 0 bytes in 0 blocks +==25726== still reachable: 24 bytes in 2 blocks +==25726== suppressed: 618,294 bytes in 8,236 blocks +==25726== Reachable blocks (those to which a pointer was found) are not shown. +==25726== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25726== +==25726== For lists of detected and suppressed errors, rerun with: -s +==25726== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestPottsMeshReader_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPottsMeshReader_valgrind.txt new file mode 100644 index 000000000..301051c71 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPottsMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==25733== Memcheck, a memory error detector +==25733== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25733== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25733== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshReader -malloc_debug -malloc_dump -memory_info +==25733== Parent PID: 23903 +==25733== +==25733== +==25733== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25733== Open file descriptor 12: +==25733== at 0xF4B407D: pipe (pipe.c:29) +==25733== by 0x196AD07D: ??? +==25733== by 0x14C664CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25733== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25733== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25733== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25733== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25733== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25733== by 0x118F5E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25733== by 0x11450D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25733== by 0x116FE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25733== by 0x116E80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25733== by 0x117517: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25733== by 0x112935: main (TestPottsMeshReader.cpp:19) +==25733== +==25733== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25733== at 0xF4B8A1C: __open_nocancel (open64_nocancel.c:39) +==25733== by 0xF43CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25733== by 0xF136822: ??? +==25733== by 0xF13696F: ??? +==25733== by 0x14D0B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25733== by 0x14D0B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25733== by 0x14CC1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25733== by 0x14C662DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25733== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25733== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25733== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25733== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25733== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25733== by 0x118F5E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25733== by 0x11450D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25733== by 0x116FE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25733== by 0x116E80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25733== by 0x117517: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25733== by 0x112935: main (TestPottsMeshReader.cpp:19) +==25733== +==25733== Open file descriptor 115: +==25733== +==25733== +==25733== Open file descriptor 112: +==25733== +==25733== +==25733== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshReader_valgrind.txt +==25733== +==25733== +==25733== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25733== +==25733== +==25733== +==25733== HEAP SUMMARY: +==25733== in use at exit: 618,318 bytes in 8,238 blocks +==25733== total heap usage: 53,379 allocs, 45,141 frees, 1,339,154,651 bytes allocated +==25733== +==25733== LEAK SUMMARY: +==25733== definitely lost: 0 bytes in 0 blocks +==25733== indirectly lost: 0 bytes in 0 blocks +==25733== possibly lost: 0 bytes in 0 blocks +==25733== still reachable: 24 bytes in 2 blocks +==25733== suppressed: 618,294 bytes in 8,236 blocks +==25733== Reachable blocks (those to which a pointer was found) are not shown. +==25733== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25733== +==25733== For lists of detected and suppressed errors, rerun with: -s +==25733== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestPottsMeshWriter_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPottsMeshWriter_valgrind.txt new file mode 100644 index 000000000..a6c54e5a2 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPottsMeshWriter_valgrind.txt @@ -0,0 +1,73 @@ +==25734== Memcheck, a memory error detector +==25734== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25734== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25734== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshWriter -malloc_debug -malloc_dump -memory_info +==25734== Parent PID: 23903 +==25734== +==25734== +==25734== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25734== Open file descriptor 12: +==25734== at 0x10CB007D: pipe (pipe.c:29) +==25734== by 0x196AD07D: ??? +==25734== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25734== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25734== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25734== by 0xF225D38: PetscInitialize (pinit.c:924) +==25734== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25734== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25734== by 0x11BA1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25734== by 0x1156B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25734== by 0x117F02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25734== by 0x117DFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25734== by 0x118411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25734== by 0x113EB5: main (TestPottsMeshWriter.cpp:18) +==25734== +==25734== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25734== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==25734== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25734== by 0x104B4822: ??? +==25734== by 0x104B496F: ??? +==25734== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25734== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25734== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25734== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25734== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25734== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25734== by 0xF225D38: PetscInitialize (pinit.c:924) +==25734== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25734== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25734== by 0x11BA1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25734== by 0x1156B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25734== by 0x117F02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25734== by 0x117DFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25734== by 0x118411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25734== by 0x113EB5: main (TestPottsMeshWriter.cpp:18) +==25734== +==25734== Open file descriptor 115: +==25734== +==25734== +==25734== Open file descriptor 112: +==25734== +==25734== +==25734== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshWriter_valgrind.txt +==25734== +==25734== +==25734== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25734== +==25734== +==25734== +==25734== HEAP SUMMARY: +==25734== in use at exit: 618,318 bytes in 8,238 blocks +==25734== total heap usage: 54,555 allocs, 46,317 frees, 1,339,582,416 bytes allocated +==25734== +==25734== LEAK SUMMARY: +==25734== definitely lost: 0 bytes in 0 blocks +==25734== indirectly lost: 0 bytes in 0 blocks +==25734== possibly lost: 0 bytes in 0 blocks +==25734== still reachable: 24 bytes in 2 blocks +==25734== suppressed: 618,294 bytes in 8,236 blocks +==25734== Reachable blocks (those to which a pointer was found) are not shown. +==25734== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25734== +==25734== For lists of detected and suppressed errors, rerun with: -s +==25734== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestPottsMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPottsMesh_valgrind.txt new file mode 100644 index 000000000..71ab40663 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPottsMesh_valgrind.txt @@ -0,0 +1,73 @@ +==25699== Memcheck, a memory error detector +==25699== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25699== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25699== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMesh -malloc_debug -malloc_dump -memory_info +==25699== Parent PID: 23903 +==25699== +==25699== +==25699== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25699== Open file descriptor 12: +==25699== at 0xF4F607D: pipe (pipe.c:29) +==25699== by 0x196AD07D: ??? +==25699== by 0x14C664CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25699== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25699== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25699== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25699== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25699== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25699== by 0x1387B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25699== by 0x13323D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25699== by 0x136272: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25699== by 0x136112: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25699== by 0x1367A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25699== by 0x131665: main (TestPottsMesh.cpp:19) +==25699== +==25699== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25699== at 0xF4FAA1C: __open_nocancel (open64_nocancel.c:39) +==25699== by 0xF47EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25699== by 0xF136822: ??? +==25699== by 0xF13696F: ??? +==25699== by 0x14D0B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25699== by 0x14D0B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25699== by 0x14CC1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25699== by 0x14C662DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25699== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25699== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25699== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25699== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25699== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25699== by 0x1387B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25699== by 0x13323D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25699== by 0x136272: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25699== by 0x136112: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25699== by 0x1367A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25699== by 0x131665: main (TestPottsMesh.cpp:19) +==25699== +==25699== Open file descriptor 115: +==25699== +==25699== +==25699== Open file descriptor 112: +==25699== +==25699== +==25699== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMesh_valgrind.txt +==25699== +==25699== +==25699== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25699== +==25699== +==25699== +==25699== HEAP SUMMARY: +==25699== in use at exit: 618,318 bytes in 8,238 blocks +==25699== total heap usage: 79,292 allocs, 71,054 frees, 1,340,374,559 bytes allocated +==25699== +==25699== LEAK SUMMARY: +==25699== definitely lost: 0 bytes in 0 blocks +==25699== indirectly lost: 0 bytes in 0 blocks +==25699== possibly lost: 0 bytes in 0 blocks +==25699== still reachable: 24 bytes in 2 blocks +==25699== suppressed: 618,294 bytes in 8,236 blocks +==25699== Reachable blocks (those to which a pointer was found) are not shown. +==25699== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25699== +==25699== For lists of detected and suppressed errors, rerun with: -s +==25699== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestPottsUpdateRules_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPottsUpdateRules_valgrind.txt new file mode 100644 index 000000000..733aa9e5a --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPottsUpdateRules_valgrind.txt @@ -0,0 +1,73 @@ +==26018== Memcheck, a memory error detector +==26018== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26018== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26018== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsUpdateRules -malloc_debug -malloc_dump -memory_info +==26018== Parent PID: 23903 +==26018== +==26018== +==26018== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26018== Open file descriptor 12: +==26018== at 0xF09707D: pipe (pipe.c:29) +==26018== by 0x196AC07D: ??? +==26018== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26018== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26018== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26018== by 0xD62FD38: PetscInitialize (pinit.c:924) +==26018== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26018== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26018== by 0x133C55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26018== by 0x12C93D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26018== by 0x12F6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26018== by 0x12F55E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26018== by 0x12FBF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26018== by 0x12AD65: main (TestPottsUpdateRules.cpp:19) +==26018== +==26018== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26018== at 0xF09BA1C: __open_nocancel (open64_nocancel.c:39) +==26018== by 0xF01FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26018== by 0xD4D9822: ??? +==26018== by 0xD4D996F: ??? +==26018== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26018== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26018== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26018== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26018== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26018== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26018== by 0xD62FD38: PetscInitialize (pinit.c:924) +==26018== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26018== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26018== by 0x133C55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26018== by 0x12C93D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26018== by 0x12F6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26018== by 0x12F55E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26018== by 0x12FBF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26018== by 0x12AD65: main (TestPottsUpdateRules.cpp:19) +==26018== +==26018== Open file descriptor 115: +==26018== +==26018== +==26018== Open file descriptor 112: +==26018== +==26018== +==26018== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsUpdateRules_valgrind.txt +==26018== +==26018== +==26018== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26018== +==26018== +==26018== +==26018== HEAP SUMMARY: +==26018== in use at exit: 618,350 bytes in 8,239 blocks +==26018== total heap usage: 67,527 allocs, 59,288 frees, 1,339,983,291 bytes allocated +==26018== +==26018== LEAK SUMMARY: +==26018== definitely lost: 0 bytes in 0 blocks +==26018== indirectly lost: 0 bytes in 0 blocks +==26018== possibly lost: 0 bytes in 0 blocks +==26018== still reachable: 56 bytes in 3 blocks +==26018== suppressed: 618,294 bytes in 8,236 blocks +==26018== Reachable blocks (those to which a pointer was found) are not shown. +==26018== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26018== +==26018== For lists of detected and suppressed errors, rerun with: -s +==26018== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestProblemDefinitions_valgrind.txt b/log-files/2024-09-07_08-54-51/TestProblemDefinitions_valgrind.txt new file mode 100644 index 000000000..b24e3c27a --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestProblemDefinitions_valgrind.txt @@ -0,0 +1,73 @@ +==25206== Memcheck, a memory error detector +==25206== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25206== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25206== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestProblemDefinitions -malloc_debug -malloc_dump -memory_info +==25206== Parent PID: 23903 +==25206== +==25206== +==25206== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25206== Open file descriptor 12: +==25206== at 0x6EBB07D: pipe (pipe.c:29) +==25206== by 0x106D707D: ??? +==25206== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25206== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25206== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25206== by 0x74F2D38: PetscInitialize (pinit.c:924) +==25206== by 0x66D71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25206== by 0x66D7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25206== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25206== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25206== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25206== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25206== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25206== by 0x124F95: main (TestProblemDefinitions.cpp:19) +==25206== +==25206== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25206== at 0x6EBFA1C: __open_nocancel (open64_nocancel.c:39) +==25206== by 0x6E43BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25206== by 0x6711822: ??? +==25206== by 0x671196F: ??? +==25206== by 0xC0846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25206== by 0xC084938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25206== by 0xC03A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25206== by 0xBFDF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25206== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25206== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25206== by 0x74F2D38: PetscInitialize (pinit.c:924) +==25206== by 0x66D71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25206== by 0x66D7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25206== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25206== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25206== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25206== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25206== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25206== by 0x124F95: main (TestProblemDefinitions.cpp:19) +==25206== +==25206== Open file descriptor 115: +==25206== +==25206== +==25206== Open file descriptor 112: +==25206== +==25206== +==25206== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestProblemDefinitions_valgrind.txt +==25206== +==25206== +==25206== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25206== +==25206== +==25206== +==25206== HEAP SUMMARY: +==25206== in use at exit: 618,270 bytes in 8,238 blocks +==25206== total heap usage: 48,561 allocs, 40,323 frees, 1,338,503,017 bytes allocated +==25206== +==25206== LEAK SUMMARY: +==25206== definitely lost: 0 bytes in 0 blocks +==25206== indirectly lost: 0 bytes in 0 blocks +==25206== possibly lost: 0 bytes in 0 blocks +==25206== still reachable: 24 bytes in 2 blocks +==25206== suppressed: 618,246 bytes in 8,236 blocks +==25206== Reachable blocks (those to which a pointer was found) are not shown. +==25206== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25206== +==25206== For lists of detected and suppressed errors, rerun with: -s +==25206== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestProgressReporter_valgrind.txt b/log-files/2024-09-07_08-54-51/TestProgressReporter_valgrind.txt new file mode 100644 index 000000000..cfa831fcc --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestProgressReporter_valgrind.txt @@ -0,0 +1,73 @@ +==24104== Memcheck, a memory error detector +==24104== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24104== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24104== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestProgressReporter -malloc_debug -malloc_dump -memory_info +==24104== Parent PID: 23903 +==24104== +==24104== +==24104== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24104== Open file descriptor 12: +==24104== at 0x616907D: pipe (pipe.c:29) +==24104== by 0xAEA507D: ??? +==24104== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24104== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24104== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24104== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24104== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24104== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24104== by 0x118E11: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24104== by 0x11280D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24104== by 0x1150D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24104== by 0x114F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24104== by 0x11560B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24104== by 0x110C35: main (TestProgressReporter.cpp:19) +==24104== +==24104== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24104== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24104== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24104== by 0x5CB2822: ??? +==24104== by 0x5CB296F: ??? +==24104== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24104== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24104== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24104== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24104== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24104== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24104== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24104== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24104== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24104== by 0x118E11: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24104== by 0x11280D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24104== by 0x1150D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24104== by 0x114F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24104== by 0x11560B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24104== by 0x110C35: main (TestProgressReporter.cpp:19) +==24104== +==24104== Open file descriptor 115: +==24104== +==24104== +==24104== Open file descriptor 112: +==24104== +==24104== +==24104== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestProgressReporter_valgrind.txt +==24104== +==24104== +==24104== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24104== +==24104== +==24104== +==24104== HEAP SUMMARY: +==24104== in use at exit: 617,838 bytes in 8,238 blocks +==24104== total heap usage: 45,070 allocs, 36,832 frees, 1,338,282,813 bytes allocated +==24104== +==24104== LEAK SUMMARY: +==24104== definitely lost: 0 bytes in 0 blocks +==24104== indirectly lost: 0 bytes in 0 blocks +==24104== possibly lost: 0 bytes in 0 blocks +==24104== still reachable: 24 bytes in 2 blocks +==24104== suppressed: 617,814 bytes in 8,236 blocks +==24104== Reachable blocks (those to which a pointer was found) are not shown. +==24104== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24104== +==24104== For lists of detected and suppressed errors, rerun with: -s +==24104== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestPropagationPropertiesCalculator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPropagationPropertiesCalculator_valgrind.txt new file mode 100644 index 000000000..9bd1b62a0 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPropagationPropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==43336== Memcheck, a memory error detector +==43336== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43336== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43336== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPropagationPropertiesCalculator -malloc_debug -malloc_dump -memory_info +==43336== Parent PID: 23903 +==43336== +==43336== +==43336== FILE DESCRIPTORS: 7 open (3 std) at exit. +==43336== Open file descriptor 115: +==43336== +==43336== +==43336== Open file descriptor 112: +==43336== +==43336== +==43336== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPropagationPropertiesCalculator_valgrind.txt +==43336== +==43336== +==43336== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43336== +==43336== +==43336== +==43336== HEAP SUMMARY: +==43336== in use at exit: 24 bytes in 2 blocks +==43336== total heap usage: 14,997,641 allocs, 14,997,639 frees, 9,167,962,367 bytes allocated +==43336== +==43336== LEAK SUMMARY: +==43336== definitely lost: 0 bytes in 0 blocks +==43336== indirectly lost: 0 bytes in 0 blocks +==43336== possibly lost: 0 bytes in 0 blocks +==43336== still reachable: 24 bytes in 2 blocks +==43336== suppressed: 0 bytes in 0 blocks +==43336== Reachable blocks (those to which a pointer was found) are not shown. +==43336== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43336== +==43336== For lists of detected and suppressed errors, rerun with: -s +==43336== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-07_08-54-51/TestPseudoEcgCalculator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestPseudoEcgCalculator_valgrind.txt new file mode 100644 index 000000000..b8fae579e --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestPseudoEcgCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==43343== Memcheck, a memory error detector +==43343== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43343== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43343== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPseudoEcgCalculator -malloc_debug -malloc_dump -memory_info +==43343== Parent PID: 23903 +==43343== +==43343== +==43343== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43343== Open file descriptor 12: +==43343== at 0xBB4107D: pipe (pipe.c:29) +==43343== by 0x1432407D: ??? +==43343== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43343== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43343== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43343== by 0xA1D3D38: PetscInitialize (pinit.c:924) +==43343== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43343== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43343== by 0x1233A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43343== by 0x11E38D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43343== by 0x120E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43343== by 0x120CC6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43343== by 0x12135D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43343== by 0x11C615: main (TestPseudoEcgCalculator.cpp:19) +==43343== +==43343== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43343== at 0xBB45A1C: __open_nocancel (open64_nocancel.c:39) +==43343== by 0xBAC9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43343== by 0xB462822: ??? +==43343== by 0xB46296F: ??? +==43343== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43343== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43343== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43343== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43343== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43343== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43343== by 0xA1D3D38: PetscInitialize (pinit.c:924) +==43343== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43343== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43343== by 0x1233A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43343== by 0x11E38D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43343== by 0x120E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43343== by 0x120CC6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43343== by 0x12135D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43343== by 0x11C615: main (TestPseudoEcgCalculator.cpp:19) +==43343== +==43343== Open file descriptor 115: +==43343== +==43343== +==43343== Open file descriptor 112: +==43343== +==43343== +==43343== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPseudoEcgCalculator_valgrind.txt +==43343== +==43343== +==43343== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43343== +==43343== +==43343== +==43343== HEAP SUMMARY: +==43343== in use at exit: 618,814 bytes in 8,248 blocks +==43343== total heap usage: 282,961 allocs, 274,713 frees, 1,373,757,075 bytes allocated +==43343== +==43343== LEAK SUMMARY: +==43343== definitely lost: 0 bytes in 0 blocks +==43343== indirectly lost: 0 bytes in 0 blocks +==43343== possibly lost: 0 bytes in 0 blocks +==43343== still reachable: 24 bytes in 2 blocks +==43343== suppressed: 618,790 bytes in 8,246 blocks +==43343== Reachable blocks (those to which a pointer was found) are not shown. +==43343== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43343== +==43343== For lists of detected and suppressed errors, rerun with: -s +==43343== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 38) diff --git a/log-files/2024-09-07_08-54-51/TestQuadraticBasisFunction_valgrind.txt b/log-files/2024-09-07_08-54-51/TestQuadraticBasisFunction_valgrind.txt new file mode 100644 index 000000000..9a2791a21 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestQuadraticBasisFunction_valgrind.txt @@ -0,0 +1,73 @@ +==25123== Memcheck, a memory error detector +==25123== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25123== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25123== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestQuadraticBasisFunction -malloc_debug -malloc_dump -memory_info +==25123== Parent PID: 23903 +==25123== +==25123== +==25123== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25123== Open file descriptor 12: +==25123== at 0x6CAC07D: pipe (pipe.c:29) +==25123== by 0x104D507D: ??? +==25123== by 0xC31D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25123== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25123== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25123== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25123== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25123== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25123== by 0x12166A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25123== by 0x11D0F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25123== by 0x11F5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25123== by 0x11F4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25123== by 0x11FB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25123== by 0x11B8F5: main (TestQuadraticBasisFunction.cpp:18) +==25123== +==25123== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25123== at 0x6CB0A1C: __open_nocancel (open64_nocancel.c:39) +==25123== by 0x6C34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25123== by 0x692E822: ??? +==25123== by 0x692E96F: ??? +==25123== by 0xC3C26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25123== by 0xC3C2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25123== by 0xC378922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25123== by 0xC31D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25123== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25123== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25123== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25123== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25123== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25123== by 0x12166A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25123== by 0x11D0F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25123== by 0x11F5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25123== by 0x11F4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25123== by 0x11FB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25123== by 0x11B8F5: main (TestQuadraticBasisFunction.cpp:18) +==25123== +==25123== Open file descriptor 115: +==25123== +==25123== +==25123== Open file descriptor 112: +==25123== +==25123== +==25123== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraticBasisFunction_valgrind.txt +==25123== +==25123== +==25123== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25123== +==25123== +==25123== +==25123== HEAP SUMMARY: +==25123== in use at exit: 618,254 bytes in 8,238 blocks +==25123== total heap usage: 47,374 allocs, 39,136 frees, 1,338,387,645 bytes allocated +==25123== +==25123== LEAK SUMMARY: +==25123== definitely lost: 0 bytes in 0 blocks +==25123== indirectly lost: 0 bytes in 0 blocks +==25123== possibly lost: 0 bytes in 0 blocks +==25123== still reachable: 24 bytes in 2 blocks +==25123== suppressed: 618,230 bytes in 8,236 blocks +==25123== Reachable blocks (those to which a pointer was found) are not shown. +==25123== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25123== +==25123== For lists of detected and suppressed errors, rerun with: -s +==25123== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestQuadraticMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestQuadraticMesh_valgrind.txt new file mode 100644 index 000000000..c384d9122 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestQuadraticMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24376== Memcheck, a memory error detector +==24376== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24376== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24376== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestQuadraticMesh -malloc_debug -malloc_dump -memory_info +==24376== Parent PID: 23903 +==24376== +==24376== +==24376== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24376== Open file descriptor 12: +==24376== at 0x6D7D07D: pipe (pipe.c:29) +==24376== by 0x100C507D: ??? +==24376== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24376== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24376== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24376== by 0x7017D38: PetscInitialize (pinit.c:924) +==24376== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24376== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24376== by 0x12FAA4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24376== by 0x12A6FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24376== by 0x12D700: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24376== by 0x12D5A0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24376== by 0x12DC37: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24376== by 0x128B25: main (TestQuadraticMesh.cpp:19) +==24376== +==24376== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24376== at 0x6D81A1C: __open_nocancel (open64_nocancel.c:39) +==24376== by 0x6D05BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24376== by 0x658F822: ??? +==24376== by 0x658F96F: ??? +==24376== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24376== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24376== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24376== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24376== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24376== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24376== by 0x7017D38: PetscInitialize (pinit.c:924) +==24376== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24376== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24376== by 0x12FAA4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24376== by 0x12A6FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24376== by 0x12D700: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24376== by 0x12D5A0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24376== by 0x12DC37: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24376== by 0x128B25: main (TestQuadraticMesh.cpp:19) +==24376== +==24376== Open file descriptor 115: +==24376== +==24376== +==24376== Open file descriptor 112: +==24376== +==24376== +==24376== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraticMesh_valgrind.txt +==24376== +==24376== +==24376== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24376== +==24376== +==24376== +==24376== HEAP SUMMARY: +==24376== in use at exit: 618,222 bytes in 8,238 blocks +==24376== total heap usage: 721,071 allocs, 712,833 frees, 1,393,907,002 bytes allocated +==24376== +==24376== LEAK SUMMARY: +==24376== definitely lost: 0 bytes in 0 blocks +==24376== indirectly lost: 0 bytes in 0 blocks +==24376== possibly lost: 0 bytes in 0 blocks +==24376== still reachable: 24 bytes in 2 blocks +==24376== suppressed: 618,198 bytes in 8,236 blocks +==24376== Reachable blocks (those to which a pointer was found) are not shown. +==24376== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24376== +==24376== For lists of detected and suppressed errors, rerun with: -s +==24376== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 2273 from 38) diff --git a/log-files/2024-09-07_08-54-51/TestQuadraturePointsGroup_valgrind.txt b/log-files/2024-09-07_08-54-51/TestQuadraturePointsGroup_valgrind.txt new file mode 100644 index 000000000..ac4feb56a --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestQuadraturePointsGroup_valgrind.txt @@ -0,0 +1,73 @@ +==25130== Memcheck, a memory error detector +==25130== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25130== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25130== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestQuadraturePointsGroup -malloc_debug -malloc_dump -memory_info +==25130== Parent PID: 23903 +==25130== +==25130== +==25130== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25130== Open file descriptor 12: +==25130== at 0x6FF107D: pipe (pipe.c:29) +==25130== by 0x104D507D: ??? +==25130== by 0xC36A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25130== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25130== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25130== by 0x7340D38: PetscInitialize (pinit.c:924) +==25130== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25130== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25130== by 0x11DFB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25130== by 0x11972D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25130== by 0x11BD38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25130== by 0x11BBD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25130== by 0x11C26F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25130== by 0x117B55: main (TestQuadraturePointsGroup.cpp:19) +==25130== +==25130== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25130== at 0x6FF5A1C: __open_nocancel (open64_nocancel.c:39) +==25130== by 0x6F79BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25130== by 0x692E822: ??? +==25130== by 0x692E96F: ??? +==25130== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25130== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25130== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25130== by 0xC36A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25130== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25130== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25130== by 0x7340D38: PetscInitialize (pinit.c:924) +==25130== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25130== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25130== by 0x11DFB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25130== by 0x11972D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25130== by 0x11BD38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25130== by 0x11BBD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25130== by 0x11C26F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25130== by 0x117B55: main (TestQuadraturePointsGroup.cpp:19) +==25130== +==25130== Open file descriptor 115: +==25130== +==25130== +==25130== Open file descriptor 112: +==25130== +==25130== +==25130== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraturePointsGroup_valgrind.txt +==25130== +==25130== +==25130== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25130== +==25130== +==25130== +==25130== HEAP SUMMARY: +==25130== in use at exit: 618,254 bytes in 8,238 blocks +==25130== total heap usage: 48,441 allocs, 40,203 frees, 1,338,878,719 bytes allocated +==25130== +==25130== LEAK SUMMARY: +==25130== definitely lost: 0 bytes in 0 blocks +==25130== indirectly lost: 0 bytes in 0 blocks +==25130== possibly lost: 0 bytes in 0 blocks +==25130== still reachable: 24 bytes in 2 blocks +==25130== suppressed: 618,230 bytes in 8,236 blocks +==25130== Reachable blocks (those to which a pointer was found) are not shown. +==25130== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25130== +==25130== For lists of detected and suppressed errors, rerun with: -s +==25130== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestRKC21IvpOdeSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRKC21IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..5a8256626 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRKC21IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24891== Memcheck, a memory error detector +==24891== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24891== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24891== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestRKC21IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24891== Parent PID: 23903 +==24891== +==24891== +==24891== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24891== Open file descriptor 12: +==24891== at 0x503907D: pipe (pipe.c:29) +==24891== by 0xB1E607D: ??? +==24891== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24891== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24891== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24891== by 0x5308D38: PetscInitialize (pinit.c:924) +==24891== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24891== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24891== by 0x127042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24891== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24891== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24891== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24891== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24891== by 0x11EEA5: main (TestRKC21IvpOdeSolver.cpp:19) +==24891== +==24891== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24891== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24891== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24891== by 0x4B76822: ??? +==24891== by 0x4B7696F: ??? +==24891== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24891== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24891== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24891== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24891== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24891== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24891== by 0x5308D38: PetscInitialize (pinit.c:924) +==24891== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24891== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24891== by 0x127042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24891== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24891== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24891== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24891== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24891== by 0x11EEA5: main (TestRKC21IvpOdeSolver.cpp:19) +==24891== +==24891== Open file descriptor 115: +==24891== +==24891== +==24891== Open file descriptor 112: +==24891== +==24891== +==24891== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRKC21IvpOdeSolver_valgrind.txt +==24891== +==24891== +==24891== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24891== +==24891== +==24891== +==24891== HEAP SUMMARY: +==24891== in use at exit: 617,902 bytes in 8,238 blocks +==24891== total heap usage: 85,383 allocs, 77,145 frees, 1,339,005,620 bytes allocated +==24891== +==24891== LEAK SUMMARY: +==24891== definitely lost: 0 bytes in 0 blocks +==24891== indirectly lost: 0 bytes in 0 blocks +==24891== possibly lost: 0 bytes in 0 blocks +==24891== still reachable: 24 bytes in 2 blocks +==24891== suppressed: 617,878 bytes in 8,236 blocks +==24891== Reachable blocks (those to which a pointer was found) are not shown. +==24891== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24891== +==24891== For lists of detected and suppressed errors, rerun with: -s +==24891== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestRandomNumberGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRandomNumberGenerator_valgrind.txt new file mode 100644 index 000000000..437febe9e --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRandomNumberGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24108== Memcheck, a memory error detector +==24108== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24108== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24108== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestRandomNumberGenerator -malloc_debug -malloc_dump -memory_info +==24108== Parent PID: 23903 +==24108== +==24108== +==24108== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24108== Open file descriptor 12: +==24108== at 0x61AB07D: pipe (pipe.c:29) +==24108== by 0xAEA507D: ??? +==24108== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24108== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24108== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24108== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24108== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24108== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24108== by 0x122A91: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24108== by 0x11DA0F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24108== by 0x1202C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24108== by 0x1201BD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24108== by 0x1207D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24108== by 0x11C205: main (TestRandomNumberGenerator.cpp:18) +==24108== +==24108== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24108== at 0x61AFA1C: __open_nocancel (open64_nocancel.c:39) +==24108== by 0x6133BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24108== by 0x4934822: ??? +==24108== by 0x493496F: ??? +==24108== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24108== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24108== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24108== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24108== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24108== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24108== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24108== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24108== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24108== by 0x122A91: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24108== by 0x11DA0F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24108== by 0x1202C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24108== by 0x1201BD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24108== by 0x1207D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24108== by 0x11C205: main (TestRandomNumberGenerator.cpp:18) +==24108== +==24108== Open file descriptor 115: +==24108== +==24108== +==24108== Open file descriptor 112: +==24108== +==24108== +==24108== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRandomNumberGenerator_valgrind.txt +==24108== +==24108== +==24108== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24108== +==24108== +==24108== +==24108== HEAP SUMMARY: +==24108== in use at exit: 620,390 bytes in 8,239 blocks +==24108== total heap usage: 45,032 allocs, 36,793 frees, 1,338,252,662 bytes allocated +==24108== +==24108== LEAK SUMMARY: +==24108== definitely lost: 0 bytes in 0 blocks +==24108== indirectly lost: 0 bytes in 0 blocks +==24108== possibly lost: 0 bytes in 0 blocks +==24108== still reachable: 2,576 bytes in 3 blocks +==24108== suppressed: 617,814 bytes in 8,236 blocks +==24108== Reachable blocks (those to which a pointer was found) are not shown. +==24108== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24108== +==24108== For lists of detected and suppressed errors, rerun with: -s +==24108== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestReplicatableVector_valgrind.txt b/log-files/2024-09-07_08-54-51/TestReplicatableVector_valgrind.txt new file mode 100644 index 000000000..c744d2f72 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestReplicatableVector_valgrind.txt @@ -0,0 +1,73 @@ +==24130== Memcheck, a memory error detector +==24130== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24130== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24130== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestReplicatableVector -malloc_debug -malloc_dump -memory_info +==24130== Parent PID: 23903 +==24130== +==24130== +==24130== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24130== Open file descriptor 12: +==24130== at 0x603207D: pipe (pipe.c:29) +==24130== by 0xAEA507D: ??? +==24130== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24130== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24130== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24130== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24130== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24130== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24130== by 0x1121BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24130== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24130== by 0x110288: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24130== by 0x110183: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24130== by 0x110797: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24130== by 0x10C555: main (TestReplicatableVector.cpp:18) +==24130== +==24130== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24130== at 0x6036A1C: __open_nocancel (open64_nocancel.c:39) +==24130== by 0x5FBABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24130== by 0x5CB2822: ??? +==24130== by 0x5CB296F: ??? +==24130== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24130== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24130== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24130== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24130== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24130== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24130== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24130== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24130== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24130== by 0x1121BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24130== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24130== by 0x110288: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24130== by 0x110183: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24130== by 0x110797: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24130== by 0x10C555: main (TestReplicatableVector.cpp:18) +==24130== +==24130== Open file descriptor 115: +==24130== +==24130== +==24130== Open file descriptor 112: +==24130== +==24130== +==24130== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestReplicatableVector_valgrind.txt +==24130== +==24130== +==24130== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24130== +==24130== +==24130== +==24130== HEAP SUMMARY: +==24130== in use at exit: 617,838 bytes in 8,238 blocks +==24130== total heap usage: 47,501 allocs, 39,263 frees, 1,338,612,428 bytes allocated +==24130== +==24130== LEAK SUMMARY: +==24130== definitely lost: 0 bytes in 0 blocks +==24130== indirectly lost: 0 bytes in 0 blocks +==24130== possibly lost: 0 bytes in 0 blocks +==24130== still reachable: 24 bytes in 2 blocks +==24130== suppressed: 617,814 bytes in 8,236 blocks +==24130== Reachable blocks (those to which a pointer was found) are not shown. +==24130== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24130== +==24130== For lists of detected and suppressed errors, rerun with: -s +==24130== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestRepresentativeImmersedBoundarySimulations_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRepresentativeImmersedBoundarySimulations_valgrind.txt new file mode 100644 index 000000000..37fae1c97 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRepresentativeImmersedBoundarySimulations_valgrind.txt @@ -0,0 +1,73 @@ +==26318== Memcheck, a memory error detector +==26318== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26318== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26318== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRepresentativeImmersedBoundarySimulations -malloc_debug -malloc_dump -memory_info +==26318== Parent PID: 23903 +==26318== +==26318== +==26318== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26318== Open file descriptor 12: +==26318== at 0x10CB007D: pipe (pipe.c:29) +==26318== by 0x196AD07D: ??? +==26318== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26318== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26318== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26318== by 0xF225D38: PetscInitialize (pinit.c:924) +==26318== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26318== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26318== by 0x12B28D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26318== by 0x126793: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26318== by 0x128B70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26318== by 0x128A6B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26318== by 0x12907F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26318== by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18) +==26318== +==26318== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26318== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==26318== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26318== by 0x104B4822: ??? +==26318== by 0x104B496F: ??? +==26318== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26318== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26318== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26318== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26318== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26318== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26318== by 0xF225D38: PetscInitialize (pinit.c:924) +==26318== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26318== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26318== by 0x12B28D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26318== by 0x126793: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26318== by 0x128B70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26318== by 0x128A6B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26318== by 0x12907F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26318== by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18) +==26318== +==26318== Open file descriptor 115: +==26318== +==26318== +==26318== Open file descriptor 112: +==26318== +==26318== +==26318== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRepresentativeImmersedBoundarySimulations_valgrind.txt +==26318== +==26318== +==26318== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26318== +==26318== +==26318== +==26318== HEAP SUMMARY: +==26318== in use at exit: 618,279 bytes in 8,235 blocks +==26318== total heap usage: 2,315,235 allocs, 2,307,000 frees, 2,101,667,888 bytes allocated +==26318== +==26318== LEAK SUMMARY: +==26318== definitely lost: 0 bytes in 0 blocks +==26318== indirectly lost: 0 bytes in 0 blocks +==26318== possibly lost: 0 bytes in 0 blocks +==26318== still reachable: 56 bytes in 3 blocks +==26318== suppressed: 618,223 bytes in 8,232 blocks +==26318== Reachable blocks (those to which a pointer was found) are not shown. +==26318== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26318== +==26318== For lists of detected and suppressed errors, rerun with: -s +==26318== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestRestitutionStimuli_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRestitutionStimuli_valgrind.txt new file mode 100644 index 000000000..ae6119fee --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRestitutionStimuli_valgrind.txt @@ -0,0 +1,73 @@ +==43382== Memcheck, a memory error detector +==43382== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43382== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43382== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestRestitutionStimuli -malloc_debug -malloc_dump -memory_info +==43382== Parent PID: 23903 +==43382== +==43382== +==43382== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43382== Open file descriptor 12: +==43382== at 0x9A6507D: pipe (pipe.c:29) +==43382== by 0x1432407D: ??? +==43382== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43382== by 0x9698418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43382== by 0x9631D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43382== by 0x8328D38: PetscInitialize (pinit.c:924) +==43382== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43382== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43382== by 0x1227E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43382== by 0x11DA5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43382== by 0x12049C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43382== by 0x12033C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43382== by 0x1209D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43382== by 0x11BE85: main (TestRestitutionStimuli.cpp:19) +==43382== +==43382== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43382== at 0x9A69A1C: __open_nocancel (open64_nocancel.c:39) +==43382== by 0x99EDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43382== by 0x81D2822: ??? +==43382== by 0x81D296F: ??? +==43382== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43382== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43382== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43382== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43382== by 0x9698418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43382== by 0x9631D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43382== by 0x8328D38: PetscInitialize (pinit.c:924) +==43382== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43382== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43382== by 0x1227E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43382== by 0x11DA5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43382== by 0x12049C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43382== by 0x12033C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43382== by 0x1209D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43382== by 0x11BE85: main (TestRestitutionStimuli.cpp:19) +==43382== +==43382== Open file descriptor 115: +==43382== +==43382== +==43382== Open file descriptor 112: +==43382== +==43382== +==43382== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRestitutionStimuli_valgrind.txt +==43382== +==43382== +==43382== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43382== +==43382== +==43382== +==43382== HEAP SUMMARY: +==43382== in use at exit: 618,334 bytes in 8,238 blocks +==43382== total heap usage: 49,255 allocs, 41,017 frees, 1,338,586,990 bytes allocated +==43382== +==43382== LEAK SUMMARY: +==43382== definitely lost: 0 bytes in 0 blocks +==43382== indirectly lost: 0 bytes in 0 blocks +==43382== possibly lost: 0 bytes in 0 blocks +==43382== still reachable: 24 bytes in 2 blocks +==43382== suppressed: 618,310 bytes in 8,236 blocks +==43382== Reachable blocks (those to which a pointer was found) are not shown. +==43382== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43382== +==43382== For lists of detected and suppressed errors, rerun with: -s +==43382== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..6854f6465 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24892== Memcheck, a memory error detector +==24892== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24892== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24892== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestRungeKuttaFehlbergIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24892== Parent PID: 23903 +==24892== +==24892== +==24892== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24892== Open file descriptor 12: +==24892== at 0x64F007D: pipe (pipe.c:29) +==24892== by 0xB1E407D: ??? +==24892== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24892== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24892== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24892== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24892== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24892== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24892== by 0x129E27: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24892== by 0x123D15: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24892== by 0x126B50: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24892== by 0x1269F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24892== by 0x127087: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24892== by 0x121085: main (TestRungeKuttaFehlbergIvpOdeSolver.cpp:19) +==24892== +==24892== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24892== at 0x64F4A1C: __open_nocancel (open64_nocancel.c:39) +==24892== by 0x6478BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24892== by 0x4B76822: ??? +==24892== by 0x4B7696F: ??? +==24892== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24892== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24892== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24892== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24892== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24892== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24892== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24892== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24892== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24892== by 0x129E27: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24892== by 0x123D15: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24892== by 0x126B50: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24892== by 0x1269F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24892== by 0x127087: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24892== by 0x121085: main (TestRungeKuttaFehlbergIvpOdeSolver.cpp:19) +==24892== +==24892== Open file descriptor 115: +==24892== +==24892== +==24892== Open file descriptor 112: +==24892== +==24892== +==24892== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt +==24892== +==24892== +==24892== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24892== +==24892== +==24892== +==24892== HEAP SUMMARY: +==24892== in use at exit: 617,902 bytes in 8,238 blocks +==24892== total heap usage: 45,765 allocs, 37,527 frees, 1,338,244,315 bytes allocated +==24892== +==24892== LEAK SUMMARY: +==24892== definitely lost: 0 bytes in 0 blocks +==24892== indirectly lost: 0 bytes in 0 blocks +==24892== possibly lost: 0 bytes in 0 blocks +==24892== still reachable: 24 bytes in 2 blocks +==24892== suppressed: 617,878 bytes in 8,236 blocks +==24892== Reachable blocks (those to which a pointer was found) are not shown. +==24892== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24892== +==24892== For lists of detected and suppressed errors, rerun with: -s +==24892== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..8c917f110 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39851== Memcheck, a memory error detector +==39851== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39851== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39851== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningContactInhibitionSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==39851== Parent PID: 23903 +==39851== +==39851== +==39851== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39851== Open file descriptor 12: +==39851== at 0x10D9707D: pipe (pipe.c:29) +==39851== by 0x196AD07D: ??? +==39851== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39851== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39851== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39851== by 0xF225D38: PetscInitialize (pinit.c:924) +==39851== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39851== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39851== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39851== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39851== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39851== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39851== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39851== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) +==39851== +==39851== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39851== at 0x10D9BA1C: __open_nocancel (open64_nocancel.c:39) +==39851== by 0x10D1FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39851== by 0x104B4822: ??? +==39851== by 0x104B496F: ??? +==39851== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39851== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39851== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39851== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39851== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39851== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39851== by 0xF225D38: PetscInitialize (pinit.c:924) +==39851== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39851== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39851== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39851== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39851== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39851== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39851== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39851== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) +==39851== +==39851== Open file descriptor 115: +==39851== +==39851== +==39851== Open file descriptor 112: +==39851== +==39851== +==39851== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt +==39851== +==39851== +==39851== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39851== +==39851== +==39851== +==39851== HEAP SUMMARY: +==39851== in use at exit: 618,279 bytes in 8,235 blocks +==39851== total heap usage: 11,072,725 allocs, 11,064,490 frees, 4,765,710,553 bytes allocated +==39851== +==39851== LEAK SUMMARY: +==39851== definitely lost: 0 bytes in 0 blocks +==39851== indirectly lost: 0 bytes in 0 blocks +==39851== possibly lost: 0 bytes in 0 blocks +==39851== still reachable: 56 bytes in 3 blocks +==39851== suppressed: 618,223 bytes in 8,232 blocks +==39851== Reachable blocks (those to which a pointer was found) are not shown. +==39851== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39851== +==39851== For lists of detected and suppressed errors, rerun with: -s +==39851== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt new file mode 100644 index 000000000..64ed682c0 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40761== Memcheck, a memory error detector +==40761== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40761== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40761== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info +==40761== Parent PID: 23903 +==40761== +==40761== +==40761== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40761== Open file descriptor 12: +==40761== at 0x1257007D: pipe (pipe.c:29) +==40761== by 0x1B36D07D: ??? +==40761== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40761== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40761== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40761== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40761== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40761== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40761== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40761== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40761== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40761== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40761== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40761== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) +==40761== +==40761== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40761== at 0x12574A1C: __open_nocancel (open64_nocancel.c:39) +==40761== by 0x124F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40761== by 0x11D74822: ??? +==40761== by 0x11D7496F: ??? +==40761== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40761== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40761== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40761== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40761== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40761== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40761== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40761== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40761== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40761== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40761== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40761== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40761== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40761== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40761== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) +==40761== +==40761== Open file descriptor 115: +==40761== +==40761== +==40761== Open file descriptor 112: +==40761== +==40761== +==40761== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt +==40761== +==40761== +==40761== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40761== +==40761== +==40761== +==40761== HEAP SUMMARY: +==40761== in use at exit: 618,295 bytes in 8,235 blocks +==40761== total heap usage: 16,186,046 allocs, 16,177,811 frees, 2,829,766,753 bytes allocated +==40761== +==40761== LEAK SUMMARY: +==40761== definitely lost: 0 bytes in 0 blocks +==40761== indirectly lost: 0 bytes in 0 blocks +==40761== possibly lost: 0 bytes in 0 blocks +==40761== still reachable: 56 bytes in 3 blocks +==40761== suppressed: 618,239 bytes in 8,232 blocks +==40761== Reachable blocks (those to which a pointer was found) are not shown. +==40761== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40761== +==40761== For lists of detected and suppressed errors, rerun with: -s +==40761== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..e2bc248fd --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39887== Memcheck, a memory error detector +==39887== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39887== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39887== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==39887== Parent PID: 23903 +==39887== +==39887== +==39887== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39887== Open file descriptor 12: +==39887== at 0xF7F907D: pipe (pipe.c:29) +==39887== by 0x196AD07D: ??? +==39887== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39887== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39887== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39887== by 0x10127D38: PetscInitialize (pinit.c:924) +==39887== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39887== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39887== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39887== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39887== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39887== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39887== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39887== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) +==39887== +==39887== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39887== at 0xF7FDA1C: __open_nocancel (open64_nocancel.c:39) +==39887== by 0xF781BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39887== by 0xF136822: ??? +==39887== by 0xF13696F: ??? +==39887== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39887== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39887== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39887== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39887== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39887== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39887== by 0x10127D38: PetscInitialize (pinit.c:924) +==39887== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39887== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39887== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39887== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39887== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39887== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39887== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39887== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) +==39887== +==39887== Open file descriptor 115: +==39887== +==39887== +==39887== Open file descriptor 112: +==39887== +==39887== +==39887== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt +==39887== +==39887== +==39887== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39887== +==39887== +==39887== +==39887== HEAP SUMMARY: +==39887== in use at exit: 618,279 bytes in 8,235 blocks +==39887== total heap usage: 5,177,214 allocs, 5,168,979 frees, 1,778,170,848 bytes allocated +==39887== +==39887== LEAK SUMMARY: +==39887== definitely lost: 0 bytes in 0 blocks +==39887== indirectly lost: 0 bytes in 0 blocks +==39887== possibly lost: 0 bytes in 0 blocks +==39887== still reachable: 56 bytes in 3 blocks +==39887== suppressed: 618,223 bytes in 8,232 blocks +==39887== Reachable blocks (those to which a pointer was found) are not shown. +==39887== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39887== +==39887== For lists of detected and suppressed errors, rerun with: -s +==39887== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..c91f64f30 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39919== Memcheck, a memory error detector +==39919== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39919== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39919== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDifferentialAdhesionSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==39919== Parent PID: 23903 +==39919== +==39919== +==39919== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39919== Open file descriptor 12: +==39919== at 0x10CB007D: pipe (pipe.c:29) +==39919== by 0x196AD07D: ??? +==39919== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39919== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39919== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39919== by 0xF225D38: PetscInitialize (pinit.c:924) +==39919== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39919== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39919== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39919== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39919== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39919== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39919== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39919== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) +==39919== +==39919== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39919== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==39919== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39919== by 0x104B4822: ??? +==39919== by 0x104B496F: ??? +==39919== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39919== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39919== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39919== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39919== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39919== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39919== by 0xF225D38: PetscInitialize (pinit.c:924) +==39919== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39919== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39919== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39919== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39919== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39919== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39919== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39919== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) +==39919== +==39919== Open file descriptor 115: +==39919== +==39919== +==39919== Open file descriptor 112: +==39919== +==39919== +==39919== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt +==39919== +==39919== +==39919== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39919== +==39919== +==39919== +==39919== HEAP SUMMARY: +==39919== in use at exit: 618,295 bytes in 8,236 blocks +==39919== total heap usage: 2,563,997 allocs, 2,555,761 frees, 1,463,690,384 bytes allocated +==39919== +==39919== LEAK SUMMARY: +==39919== definitely lost: 0 bytes in 0 blocks +==39919== indirectly lost: 0 bytes in 0 blocks +==39919== possibly lost: 0 bytes in 0 blocks +==39919== still reachable: 72 bytes in 4 blocks +==39919== suppressed: 618,223 bytes in 8,232 blocks +==39919== Reachable blocks (those to which a pointer was found) are not shown. +==39919== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39919== +==39919== For lists of detected and suppressed errors, rerun with: -s +==39919== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..de093f3e3 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39922== Memcheck, a memory error detector +==39922== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39922== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39922== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningImmersedBoundarySimulationsTutorial -malloc_debug -malloc_dump -memory_info +==39922== Parent PID: 23903 +==39922== +==39922== +==39922== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39922== Open file descriptor 12: +==39922== at 0x10CB007D: pipe (pipe.c:29) +==39922== by 0x196AD07D: ??? +==39922== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39922== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39922== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39922== by 0xF225D38: PetscInitialize (pinit.c:924) +==39922== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39922== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39922== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39922== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39922== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39922== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39922== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39922== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) +==39922== +==39922== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39922== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==39922== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39922== by 0x104B4822: ??? +==39922== by 0x104B496F: ??? +==39922== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39922== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39922== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39922== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39922== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39922== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39922== by 0xF225D38: PetscInitialize (pinit.c:924) +==39922== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39922== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39922== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39922== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39922== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39922== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39922== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39922== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) +==39922== +==39922== Open file descriptor 115: +==39922== +==39922== +==39922== Open file descriptor 112: +==39922== +==39922== +==39922== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt +==39922== +==39922== +==39922== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39922== +==39922== +==39922== +==39922== HEAP SUMMARY: +==39922== in use at exit: 618,279 bytes in 8,235 blocks +==39922== total heap usage: 654,976 allocs, 646,741 frees, 1,512,860,793 bytes allocated +==39922== +==39922== LEAK SUMMARY: +==39922== definitely lost: 0 bytes in 0 blocks +==39922== indirectly lost: 0 bytes in 0 blocks +==39922== possibly lost: 0 bytes in 0 blocks +==39922== still reachable: 56 bytes in 3 blocks +==39922== suppressed: 618,223 bytes in 8,232 blocks +==39922== Reachable blocks (those to which a pointer was found) are not shown. +==39922== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39922== +==39922== For lists of detected and suppressed errors, rerun with: -s +==39922== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..0641e1354 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40813== Memcheck, a memory error detector +==40813== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40813== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40813== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40813== Parent PID: 23903 +==40813== +==40813== +==40813== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40813== Open file descriptor 12: +==40813== at 0x1257007D: pipe (pipe.c:29) +==40813== by 0x1B36D07D: ??? +==40813== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40813== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40813== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40813== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40813== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40813== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40813== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40813== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40813== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40813== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40813== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40813== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) +==40813== +==40813== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40813== at 0x12574A1C: __open_nocancel (open64_nocancel.c:39) +==40813== by 0x124F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40813== by 0x11D74822: ??? +==40813== by 0x11D7496F: ??? +==40813== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40813== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40813== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40813== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40813== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40813== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40813== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40813== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40813== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40813== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40813== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40813== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40813== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40813== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40813== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) +==40813== +==40813== Open file descriptor 115: +==40813== +==40813== +==40813== Open file descriptor 112: +==40813== +==40813== +==40813== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt +==40813== +==40813== +==40813== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40813== +==40813== +==40813== +==40813== HEAP SUMMARY: +==40813== in use at exit: 618,366 bytes in 8,239 blocks +==40813== total heap usage: 1,753,598 allocs, 1,745,359 frees, 1,514,896,700 bytes allocated +==40813== +==40813== LEAK SUMMARY: +==40813== definitely lost: 0 bytes in 0 blocks +==40813== indirectly lost: 0 bytes in 0 blocks +==40813== possibly lost: 0 bytes in 0 blocks +==40813== still reachable: 56 bytes in 3 blocks +==40813== suppressed: 618,310 bytes in 8,236 blocks +==40813== Reachable blocks (those to which a pointer was found) are not shown. +==40813== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40813== +==40813== For lists of detected and suppressed errors, rerun with: -s +==40813== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestRunningMeshBasedSimulationsTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRunningMeshBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..6b270e758 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRunningMeshBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39975== Memcheck, a memory error detector +==39975== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39975== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39975== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==39975== Parent PID: 23903 +==39975== +==39975== +==39975== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39975== Open file descriptor 12: +==39975== at 0x10CB007D: pipe (pipe.c:29) +==39975== by 0x196AD07D: ??? +==39975== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39975== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39975== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39975== by 0xF225D38: PetscInitialize (pinit.c:924) +==39975== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39975== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39975== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39975== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39975== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39975== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39975== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39975== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) +==39975== +==39975== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39975== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==39975== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39975== by 0x104B4822: ??? +==39975== by 0x104B496F: ??? +==39975== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39975== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39975== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39975== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39975== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39975== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39975== by 0xF225D38: PetscInitialize (pinit.c:924) +==39975== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39975== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39975== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39975== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39975== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39975== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39975== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39975== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) +==39975== +==39975== Open file descriptor 115: +==39975== +==39975== +==39975== Open file descriptor 112: +==39975== +==39975== +==39975== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt +==39975== +==39975== +==39975== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39975== +==39975== +==39975== +==39975== HEAP SUMMARY: +==39975== in use at exit: 618,279 bytes in 8,235 blocks +==39975== total heap usage: 3,334,916 allocs, 3,326,681 frees, 2,266,435,887 bytes allocated +==39975== +==39975== LEAK SUMMARY: +==39975== definitely lost: 0 bytes in 0 blocks +==39975== indirectly lost: 0 bytes in 0 blocks +==39975== possibly lost: 0 bytes in 0 blocks +==39975== still reachable: 56 bytes in 3 blocks +==39975== suppressed: 618,223 bytes in 8,232 blocks +==39975== Reachable blocks (those to which a pointer was found) are not shown. +==39975== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39975== +==39975== For lists of detected and suppressed errors, rerun with: -s +==39975== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestRunningNodeBasedSimulationsTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRunningNodeBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..bffbd94bf --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRunningNodeBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40013== Memcheck, a memory error detector +==40013== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40013== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40013== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40013== Parent PID: 23903 +==40013== +==40013== +==40013== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40013== Open file descriptor 12: +==40013== at 0xF8E007D: pipe (pipe.c:29) +==40013== by 0x196AD07D: ??? +==40013== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40013== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40013== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40013== by 0x10210D38: PetscInitialize (pinit.c:924) +==40013== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40013== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40013== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40013== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40013== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40013== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40013== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40013== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) +==40013== +==40013== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40013== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==40013== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40013== by 0xF136822: ??? +==40013== by 0xF13696F: ??? +==40013== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40013== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40013== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40013== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40013== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40013== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40013== by 0x10210D38: PetscInitialize (pinit.c:924) +==40013== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40013== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40013== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40013== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40013== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40013== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40013== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40013== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) +==40013== +==40013== Open file descriptor 115: +==40013== +==40013== +==40013== Open file descriptor 112: +==40013== +==40013== +==40013== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt +==40013== +==40013== +==40013== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40013== +==40013== +==40013== +==40013== HEAP SUMMARY: +==40013== in use at exit: 618,350 bytes in 8,239 blocks +==40013== total heap usage: 672,360 allocs, 664,121 frees, 1,725,082,869 bytes allocated +==40013== +==40013== LEAK SUMMARY: +==40013== definitely lost: 0 bytes in 0 blocks +==40013== indirectly lost: 0 bytes in 0 blocks +==40013== possibly lost: 0 bytes in 0 blocks +==40013== still reachable: 56 bytes in 3 blocks +==40013== suppressed: 618,294 bytes in 8,236 blocks +==40013== Reachable blocks (those to which a pointer was found) are not shown. +==40013== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40013== +==40013== For lists of detected and suppressed errors, rerun with: -s +==40013== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestRunningPottsBasedSimulationsTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRunningPottsBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..2554b2011 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRunningPottsBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40016== Memcheck, a memory error detector +==40016== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40016== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40016== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40016== Parent PID: 23903 +==40016== +==40016== +==40016== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40016== Open file descriptor 12: +==40016== at 0xDB9E07D: pipe (pipe.c:29) +==40016== by 0x196AD07D: ??? +==40016== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40016== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40016== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40016== by 0x10127D38: PetscInitialize (pinit.c:924) +==40016== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40016== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40016== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40016== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40016== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40016== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40016== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40016== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) +==40016== +==40016== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40016== at 0xDBA2A1C: __open_nocancel (open64_nocancel.c:39) +==40016== by 0xDB26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40016== by 0xD4D9822: ??? +==40016== by 0xD4D996F: ??? +==40016== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40016== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40016== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40016== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40016== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40016== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40016== by 0x10127D38: PetscInitialize (pinit.c:924) +==40016== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40016== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40016== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40016== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40016== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40016== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40016== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40016== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) +==40016== +==40016== Open file descriptor 115: +==40016== +==40016== +==40016== Open file descriptor 112: +==40016== +==40016== +==40016== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt +==40016== +==40016== +==40016== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40016== +==40016== +==40016== +==40016== HEAP SUMMARY: +==40016== in use at exit: 618,279 bytes in 8,235 blocks +==40016== total heap usage: 40,686,890 allocs, 40,678,655 frees, 3,830,313,364 bytes allocated +==40016== +==40016== LEAK SUMMARY: +==40016== definitely lost: 0 bytes in 0 blocks +==40016== indirectly lost: 0 bytes in 0 blocks +==40016== possibly lost: 0 bytes in 0 blocks +==40016== still reachable: 56 bytes in 3 blocks +==40016== suppressed: 618,223 bytes in 8,232 blocks +==40016== Reachable blocks (those to which a pointer was found) are not shown. +==40016== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40016== +==40016== For lists of detected and suppressed errors, rerun with: -s +==40016== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..ae7353492 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40029== Memcheck, a memory error detector +==40029== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40029== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40029== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40029== Parent PID: 23903 +==40029== +==40029== +==40029== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40029== Open file descriptor 12: +==40029== at 0xFB9607D: pipe (pipe.c:29) +==40029== by 0x196AC07D: ??? +==40029== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40029== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40029== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40029== by 0x10127D38: PetscInitialize (pinit.c:924) +==40029== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40029== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40029== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40029== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40029== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40029== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40029== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40029== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) +==40029== +==40029== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40029== at 0xFB9AA1C: __open_nocancel (open64_nocancel.c:39) +==40029== by 0xFB1EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40029== by 0xF4D3822: ??? +==40029== by 0xF4D396F: ??? +==40029== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40029== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40029== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40029== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40029== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40029== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40029== by 0x10127D38: PetscInitialize (pinit.c:924) +==40029== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40029== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40029== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40029== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40029== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40029== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40029== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40029== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) +==40029== +==40029== Open file descriptor 115: +==40029== +==40029== +==40029== Open file descriptor 112: +==40029== +==40029== +==40029== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt +==40029== +==40029== +==40029== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40029== +==40029== +==40029== +==40029== HEAP SUMMARY: +==40029== in use at exit: 618,279 bytes in 8,235 blocks +==40029== total heap usage: 2,084,194 allocs, 2,075,959 frees, 1,674,709,959 bytes allocated +==40029== +==40029== LEAK SUMMARY: +==40029== definitely lost: 0 bytes in 0 blocks +==40029== indirectly lost: 0 bytes in 0 blocks +==40029== possibly lost: 0 bytes in 0 blocks +==40029== still reachable: 56 bytes in 3 blocks +==40029== suppressed: 618,223 bytes in 8,232 blocks +==40029== Reachable blocks (those to which a pointer was found) are not shown. +==40029== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40029== +==40029== For lists of detected and suppressed errors, rerun with: -s +==40029== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..8309c5377 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40815== Memcheck, a memory error detector +==40815== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40815== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40815== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40815== Parent PID: 23903 +==40815== +==40815== +==40815== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40815== Open file descriptor 12: +==40815== at 0x1257007D: pipe (pipe.c:29) +==40815== by 0x1B36D07D: ??? +==40815== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40815== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40815== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40815== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40815== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40815== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40815== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40815== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40815== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40815== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40815== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40815== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) +==40815== +==40815== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40815== at 0x12574A1C: __open_nocancel (open64_nocancel.c:39) +==40815== by 0x124F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40815== by 0x11D74822: ??? +==40815== by 0x11D7496F: ??? +==40815== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40815== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40815== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40815== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40815== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40815== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40815== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40815== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40815== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40815== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40815== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40815== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40815== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40815== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40815== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) +==40815== +==40815== Open file descriptor 115: +==40815== +==40815== +==40815== Open file descriptor 112: +==40815== +==40815== +==40815== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt +==40815== +==40815== +==40815== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40815== +==40815== +==40815== +==40815== HEAP SUMMARY: +==40815== in use at exit: 618,446 bytes in 8,240 blocks +==40815== total heap usage: 1,617,682 allocs, 1,609,442 frees, 1,458,368,638 bytes allocated +==40815== +==40815== LEAK SUMMARY: +==40815== definitely lost: 0 bytes in 0 blocks +==40815== indirectly lost: 0 bytes in 0 blocks +==40815== possibly lost: 0 bytes in 0 blocks +==40815== still reachable: 136 bytes in 4 blocks +==40815== suppressed: 618,310 bytes in 8,236 blocks +==40815== Reachable blocks (those to which a pointer was found) are not shown. +==40815== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40815== +==40815== For lists of detected and suppressed errors, rerun with: -s +==40815== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestRunningVertexBasedSimulationsTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRunningVertexBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..62f174665 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRunningVertexBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40068== Memcheck, a memory error detector +==40068== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40068== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40068== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40068== Parent PID: 23903 +==40068== +==40068== +==40068== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40068== Open file descriptor 12: +==40068== at 0x10D9707D: pipe (pipe.c:29) +==40068== by 0x196AD07D: ??? +==40068== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40068== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40068== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40068== by 0xF225D38: PetscInitialize (pinit.c:924) +==40068== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40068== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40068== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40068== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40068== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40068== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40068== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40068== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) +==40068== +==40068== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40068== at 0x10D9BA1C: __open_nocancel (open64_nocancel.c:39) +==40068== by 0x10D1FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40068== by 0x104B4822: ??? +==40068== by 0x104B496F: ??? +==40068== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40068== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40068== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40068== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40068== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40068== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40068== by 0xF225D38: PetscInitialize (pinit.c:924) +==40068== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40068== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40068== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40068== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40068== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40068== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40068== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40068== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) +==40068== +==40068== Open file descriptor 115: +==40068== +==40068== +==40068== Open file descriptor 112: +==40068== +==40068== +==40068== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt +==40068== +==40068== +==40068== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40068== +==40068== +==40068== +==40068== HEAP SUMMARY: +==40068== in use at exit: 618,350 bytes in 8,239 blocks +==40068== total heap usage: 1,398,845 allocs, 1,390,606 frees, 1,398,428,922 bytes allocated +==40068== +==40068== LEAK SUMMARY: +==40068== definitely lost: 0 bytes in 0 blocks +==40068== indirectly lost: 0 bytes in 0 blocks +==40068== possibly lost: 0 bytes in 0 blocks +==40068== still reachable: 56 bytes in 3 blocks +==40068== suppressed: 618,294 bytes in 8,236 blocks +==40068== Reachable blocks (those to which a pointer was found) are not shown. +==40068== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40068== +==40068== For lists of detected and suppressed errors, rerun with: -s +==40068== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestRushLarsen_valgrind.txt b/log-files/2024-09-07_08-54-51/TestRushLarsen_valgrind.txt new file mode 100644 index 000000000..155fb56ac --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestRushLarsen_valgrind.txt @@ -0,0 +1,73 @@ +==42542== Memcheck, a memory error detector +==42542== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42542== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42542== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestRushLarsen -malloc_debug -malloc_dump -memory_info +==42542== Parent PID: 23903 +==42542== +==42542== +==42542== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42542== Open file descriptor 12: +==42542== at 0x9C6507D: pipe (pipe.c:29) +==42542== by 0x1432407D: ??? +==42542== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42542== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42542== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42542== by 0x8505D38: PetscInitialize (pinit.c:924) +==42542== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42542== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42542== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42542== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42542== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42542== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42542== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42542== by 0x114C35: main (TestRushLarsen.cpp:18) +==42542== +==42542== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42542== at 0x9C69A1C: __open_nocancel (open64_nocancel.c:39) +==42542== by 0x9BEDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42542== by 0x9794822: ??? +==42542== by 0x979496F: ??? +==42542== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42542== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42542== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42542== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42542== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42542== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42542== by 0x8505D38: PetscInitialize (pinit.c:924) +==42542== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42542== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42542== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42542== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42542== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42542== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42542== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42542== by 0x114C35: main (TestRushLarsen.cpp:18) +==42542== +==42542== Open file descriptor 115: +==42542== +==42542== +==42542== Open file descriptor 112: +==42542== +==42542== +==42542== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRushLarsen_valgrind.txt +==42542== +==42542== +==42542== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42542== +==42542== +==42542== +==42542== HEAP SUMMARY: +==42542== in use at exit: 621,814 bytes in 8,242 blocks +==42542== total heap usage: 1,051,895 allocs, 1,043,653 frees, 1,778,851,333 bytes allocated +==42542== +==42542== LEAK SUMMARY: +==42542== definitely lost: 0 bytes in 0 blocks +==42542== indirectly lost: 0 bytes in 0 blocks +==42542== possibly lost: 0 bytes in 0 blocks +==42542== still reachable: 3,575 bytes in 10 blocks +==42542== suppressed: 618,239 bytes in 8,232 blocks +==42542== Reachable blocks (those to which a pointer was found) are not shown. +==42542== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42542== +==42542== For lists of detected and suppressed errors, rerun with: -s +==42542== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestShovingCaBasedDivisionRules_valgrind.txt b/log-files/2024-09-07_08-54-51/TestShovingCaBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..79bda04a0 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestShovingCaBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==40344== Memcheck, a memory error detector +==40344== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40344== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40344== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestShovingCaBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==40344== Parent PID: 23903 +==40344== +==40344== +==40344== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40344== Open file descriptor 12: +==40344== at 0x1095707D: pipe (pipe.c:29) +==40344== by 0x1B36D07D: ??? +==40344== by 0x154C04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40344== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40344== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40344== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40344== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40344== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40344== by 0x12E1A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40344== by 0x128F3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40344== by 0x12B950: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40344== by 0x12B7F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40344== by 0x12BE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40344== by 0x127365: main (TestShovingCaBasedDivisionRules.cpp:19) +==40344== +==40344== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40344== at 0x1095BA1C: __open_nocancel (open64_nocancel.c:39) +==40344== by 0x108DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40344== by 0xED9B822: ??? +==40344== by 0xED9B96F: ??? +==40344== by 0x155656DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40344== by 0x15565938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40344== by 0x1551B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40344== by 0x154C02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40344== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40344== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40344== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40344== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40344== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40344== by 0x12E1A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40344== by 0x128F3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40344== by 0x12B950: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40344== by 0x12B7F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40344== by 0x12BE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40344== by 0x127365: main (TestShovingCaBasedDivisionRules.cpp:19) +==40344== +==40344== Open file descriptor 115: +==40344== +==40344== +==40344== Open file descriptor 112: +==40344== +==40344== +==40344== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestShovingCaBasedDivisionRules_valgrind.txt +==40344== +==40344== +==40344== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40344== +==40344== +==40344== +==40344== HEAP SUMMARY: +==40344== in use at exit: 618,382 bytes in 8,240 blocks +==40344== total heap usage: 57,801 allocs, 49,561 frees, 1,339,211,152 bytes allocated +==40344== +==40344== LEAK SUMMARY: +==40344== definitely lost: 0 bytes in 0 blocks +==40344== indirectly lost: 0 bytes in 0 blocks +==40344== possibly lost: 0 bytes in 0 blocks +==40344== still reachable: 72 bytes in 4 blocks +==40344== suppressed: 618,310 bytes in 8,236 blocks +==40344== Reachable blocks (those to which a pointer was found) are not shown. +==40344== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40344== +==40344== For lists of detected and suppressed errors, rerun with: -s +==40344== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestSimpleCellCycleModelsForCrypt_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSimpleCellCycleModelsForCrypt_valgrind.txt new file mode 100644 index 000000000..4291fc1f1 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSimpleCellCycleModelsForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40133== Memcheck, a memory error detector +==40133== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40133== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40133== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info +==40133== Parent PID: 23903 +==40133== +==40133== +==40133== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40133== Open file descriptor 12: +==40133== at 0x1095707D: pipe (pipe.c:29) +==40133== by 0x1B36D07D: ??? +==40133== by 0x154C04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40133== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40133== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40133== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40133== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40133== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40133== by 0x186CD7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40133== by 0x17F2CB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40133== by 0x18258E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40133== by 0x18242E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40133== by 0x182AC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40133== by 0x17BBF5: main (TestSimpleCellCycleModelsForCrypt.cpp:19) +==40133== +==40133== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40133== at 0x1095BA1C: __open_nocancel (open64_nocancel.c:39) +==40133== by 0x108DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40133== by 0xED9B822: ??? +==40133== by 0xED9B96F: ??? +==40133== by 0x155656DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40133== by 0x15565938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40133== by 0x1551B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40133== by 0x154C02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40133== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40133== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40133== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40133== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40133== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40133== by 0x186CD7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40133== by 0x17F2CB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40133== by 0x18258E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40133== by 0x18242E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40133== by 0x182AC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40133== by 0x17BBF5: main (TestSimpleCellCycleModelsForCrypt.cpp:19) +==40133== +==40133== Open file descriptor 115: +==40133== +==40133== +==40133== Open file descriptor 112: +==40133== +==40133== +==40133== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt +==40133== +==40133== +==40133== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40133== +==40133== +==40133== +==40133== HEAP SUMMARY: +==40133== in use at exit: 618,430 bytes in 8,240 blocks +==40133== total heap usage: 753,783 allocs, 745,543 frees, 1,372,608,847 bytes allocated +==40133== +==40133== LEAK SUMMARY: +==40133== definitely lost: 0 bytes in 0 blocks +==40133== indirectly lost: 0 bytes in 0 blocks +==40133== possibly lost: 0 bytes in 0 blocks +==40133== still reachable: 120 bytes in 4 blocks +==40133== suppressed: 618,310 bytes in 8,236 blocks +==40133== Reachable blocks (those to which a pointer was found) are not shown. +==40133== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40133== +==40133== For lists of detected and suppressed errors, rerun with: -s +==40133== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestSimpleCellCycleModels_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSimpleCellCycleModels_valgrind.txt new file mode 100644 index 000000000..57360728c --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSimpleCellCycleModels_valgrind.txt @@ -0,0 +1,73 @@ +==25348== Memcheck, a memory error detector +==25348== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25348== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25348== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimpleCellCycleModels -malloc_debug -malloc_dump -memory_info +==25348== Parent PID: 23903 +==25348== +==25348== +==25348== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25348== Open file descriptor 12: +==25348== at 0xED5007D: pipe (pipe.c:29) +==25348== by 0x196AC07D: ??? +==25348== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25348== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25348== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25348== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25348== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25348== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25348== by 0x137FA7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25348== by 0x13098F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25348== by 0x133A5C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25348== by 0x1338FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25348== by 0x133F93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25348== by 0x12D2C5: main (TestSimpleCellCycleModels.cpp:19) +==25348== +==25348== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25348== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25348== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25348== by 0xD4D9822: ??? +==25348== by 0xD4D996F: ??? +==25348== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25348== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25348== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25348== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25348== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25348== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25348== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25348== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25348== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25348== by 0x137FA7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25348== by 0x13098F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25348== by 0x133A5C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25348== by 0x1338FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25348== by 0x133F93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25348== by 0x12D2C5: main (TestSimpleCellCycleModels.cpp:19) +==25348== +==25348== Open file descriptor 115: +==25348== +==25348== +==25348== Open file descriptor 112: +==25348== +==25348== +==25348== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModels_valgrind.txt +==25348== +==25348== +==25348== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25348== +==25348== +==25348== +==25348== HEAP SUMMARY: +==25348== in use at exit: 618,382 bytes in 8,240 blocks +==25348== total heap usage: 78,951 allocs, 70,711 frees, 1,342,261,360 bytes allocated +==25348== +==25348== LEAK SUMMARY: +==25348== definitely lost: 0 bytes in 0 blocks +==25348== indirectly lost: 0 bytes in 0 blocks +==25348== possibly lost: 0 bytes in 0 blocks +==25348== still reachable: 88 bytes in 4 blocks +==25348== suppressed: 618,294 bytes in 8,236 blocks +==25348== Reachable blocks (those to which a pointer was found) are not shown. +==25348== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25348== +==25348== For lists of detected and suppressed errors, rerun with: -s +==25348== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestSimpleDataWriter_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSimpleDataWriter_valgrind.txt new file mode 100644 index 000000000..ff744ed2b --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSimpleDataWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24195== Memcheck, a memory error detector +==24195== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24195== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24195== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestSimpleDataWriter -malloc_debug -malloc_dump -memory_info +==24195== Parent PID: 23903 +==24195== +==24195== +==24195== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24195== Open file descriptor 12: +==24195== at 0x61DC07D: pipe (pipe.c:29) +==24195== by 0xAF1807D: ??? +==24195== by 0x8A2F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24195== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24195== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24195== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24195== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24195== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24195== by 0x11CE43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24195== by 0x11682D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24195== by 0x119106: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24195== by 0x118FA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24195== by 0x11963D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24195== by 0x114C55: main (TestSimpleDataWriter.cpp:19) +==24195== +==24195== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24195== at 0x61E0A1C: __open_nocancel (open64_nocancel.c:39) +==24195== by 0x6164BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24195== by 0x5D25822: ??? +==24195== by 0x5D2596F: ??? +==24195== by 0x8AD66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24195== by 0x8AD6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24195== by 0x8A8C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24195== by 0x8A2F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24195== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24195== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24195== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24195== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24195== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24195== by 0x11CE43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24195== by 0x11682D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24195== by 0x119106: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24195== by 0x118FA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24195== by 0x11963D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24195== by 0x114C55: main (TestSimpleDataWriter.cpp:19) +==24195== +==24195== Open file descriptor 115: +==24195== +==24195== +==24195== Open file descriptor 112: +==24195== +==24195== +==24195== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleDataWriter_valgrind.txt +==24195== +==24195== +==24195== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24195== +==24195== +==24195== +==24195== HEAP SUMMARY: +==24195== in use at exit: 617,854 bytes in 8,238 blocks +==24195== total heap usage: 45,177 allocs, 36,939 frees, 1,338,359,921 bytes allocated +==24195== +==24195== LEAK SUMMARY: +==24195== definitely lost: 0 bytes in 0 blocks +==24195== indirectly lost: 0 bytes in 0 blocks +==24195== possibly lost: 0 bytes in 0 blocks +==24195== still reachable: 24 bytes in 2 blocks +==24195== suppressed: 617,830 bytes in 8,236 blocks +==24195== Reachable blocks (those to which a pointer was found) are not shown. +==24195== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24195== +==24195== For lists of detected and suppressed errors, rerun with: -s +==24195== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestSimpleImpedanceProblem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSimpleImpedanceProblem_valgrind.txt new file mode 100644 index 000000000..a4ebee8a0 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSimpleImpedanceProblem_valgrind.txt @@ -0,0 +1,73 @@ +==40870== Memcheck, a memory error detector +==40870== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40870== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40870== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestSimpleImpedanceProblem -malloc_debug -malloc_dump -memory_info +==40870== Parent PID: 23903 +==40870== +==40870== +==40870== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40870== Open file descriptor 12: +==40870== at 0x6D7207D: pipe (pipe.c:29) +==40870== by 0x107A407D: ??? +==40870== by 0xC01A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40870== by 0x82ED418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40870== by 0x8286D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40870== by 0x6F7DD38: PetscInitialize (pinit.c:924) +==40870== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40870== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40870== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40870== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40870== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40870== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40870== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40870== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) +==40870== +==40870== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40870== at 0x6D76A1C: __open_nocancel (open64_nocancel.c:39) +==40870== by 0x6CFABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40870== by 0x66AF822: ??? +==40870== by 0x66AF96F: ??? +==40870== by 0xC0BF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40870== by 0xC0BF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40870== by 0xC075922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40870== by 0xC01A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40870== by 0x82ED418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40870== by 0x8286D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40870== by 0x6F7DD38: PetscInitialize (pinit.c:924) +==40870== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40870== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40870== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40870== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40870== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40870== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40870== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40870== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) +==40870== +==40870== Open file descriptor 115: +==40870== +==40870== +==40870== Open file descriptor 112: +==40870== +==40870== +==40870== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleImpedanceProblem_valgrind.txt +==40870== +==40870== +==40870== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40870== +==40870== +==40870== +==40870== HEAP SUMMARY: +==40870== in use at exit: 618,247 bytes in 8,234 blocks +==40870== total heap usage: 7,105,342 allocs, 7,097,108 frees, 1,601,381,162 bytes allocated +==40870== +==40870== LEAK SUMMARY: +==40870== definitely lost: 0 bytes in 0 blocks +==40870== indirectly lost: 0 bytes in 0 blocks +==40870== possibly lost: 0 bytes in 0 blocks +==40870== still reachable: 24 bytes in 2 blocks +==40870== suppressed: 618,223 bytes in 8,232 blocks +==40870== Reachable blocks (those to which a pointer was found) are not shown. +==40870== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40870== +==40870== For lists of detected and suppressed errors, rerun with: -s +==40870== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-07_08-54-51/TestSimpleLinearEllipticSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSimpleLinearEllipticSolver_valgrind.txt new file mode 100644 index 000000000..5e0bc91cf --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSimpleLinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24979== Memcheck, a memory error detector +==24979== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24979== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24979== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleLinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==24979== Parent PID: 23903 +==24979== +==24979== +==24979== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24979== Open file descriptor 12: +==24979== at 0x84E707D: pipe (pipe.c:29) +==24979== by 0x104D507D: ??? +==24979== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24979== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24979== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24979== by 0x6AACD38: PetscInitialize (pinit.c:924) +==24979== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24979== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24979== by 0x19C0B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24979== by 0x1968F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24979== by 0x1998A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24979== by 0x19979F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24979== by 0x199DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24979== by 0x1950F5: main (TestSimpleLinearEllipticSolver.cpp:18) +==24979== +==24979== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24979== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==24979== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24979== by 0x7D3B822: ??? +==24979== by 0x7D3B96F: ??? +==24979== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24979== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24979== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24979== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24979== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24979== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24979== by 0x6AACD38: PetscInitialize (pinit.c:924) +==24979== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24979== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24979== by 0x19C0B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24979== by 0x1968F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24979== by 0x1998A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24979== by 0x19979F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24979== by 0x199DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24979== by 0x1950F5: main (TestSimpleLinearEllipticSolver.cpp:18) +==24979== +==24979== Open file descriptor 115: +==24979== +==24979== +==24979== Open file descriptor 112: +==24979== +==24979== +==24979== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleLinearEllipticSolver_valgrind.txt +==24979== +==24979== +==24979== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24979== +==24979== +==24979== +==24979== HEAP SUMMARY: +==24979== in use at exit: 618,254 bytes in 8,238 blocks +==24979== total heap usage: 210,200 allocs, 201,962 frees, 1,356,095,824 bytes allocated +==24979== +==24979== LEAK SUMMARY: +==24979== definitely lost: 0 bytes in 0 blocks +==24979== indirectly lost: 0 bytes in 0 blocks +==24979== possibly lost: 0 bytes in 0 blocks +==24979== still reachable: 24 bytes in 2 blocks +==24979== suppressed: 618,230 bytes in 8,236 blocks +==24979== Reachable blocks (those to which a pointer was found) are not shown. +==24979== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24979== +==24979== For lists of detected and suppressed errors, rerun with: -s +==24979== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestSimpleLinearParabolicSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSimpleLinearParabolicSolver_valgrind.txt new file mode 100644 index 000000000..9320afc06 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSimpleLinearParabolicSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24972== Memcheck, a memory error detector +==24972== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24972== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24972== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleLinearParabolicSolver -malloc_debug -malloc_dump -memory_info +==24972== Parent PID: 23903 +==24972== +==24972== +==24972== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24972== Open file descriptor 12: +==24972== at 0x855A07D: pipe (pipe.c:29) +==24972== by 0x104D507D: ??? +==24972== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24972== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24972== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24972== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==24972== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24972== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24972== by 0x1553A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24972== by 0x14FA6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24972== by 0x152E08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24972== by 0x152CA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24972== by 0x15333F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24972== by 0x14DE95: main (TestSimpleLinearParabolicSolver.cpp:19) +==24972== +==24972== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24972== at 0x855EA1C: __open_nocancel (open64_nocancel.c:39) +==24972== by 0x84E2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24972== by 0x7DAE822: ??? +==24972== by 0x7DAE96F: ??? +==24972== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24972== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24972== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24972== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24972== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24972== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24972== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==24972== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24972== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24972== by 0x1553A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24972== by 0x14FA6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24972== by 0x152E08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24972== by 0x152CA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24972== by 0x15333F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24972== by 0x14DE95: main (TestSimpleLinearParabolicSolver.cpp:19) +==24972== +==24972== Open file descriptor 115: +==24972== +==24972== +==24972== Open file descriptor 112: +==24972== +==24972== +==24972== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleLinearParabolicSolver_valgrind.txt +==24972== +==24972== +==24972== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24972== +==24972== +==24972== +==24972== HEAP SUMMARY: +==24972== in use at exit: 618,734 bytes in 8,248 blocks +==24972== total heap usage: 370,031 allocs, 361,783 frees, 1,429,167,238 bytes allocated +==24972== +==24972== LEAK SUMMARY: +==24972== definitely lost: 0 bytes in 0 blocks +==24972== indirectly lost: 0 bytes in 0 blocks +==24972== possibly lost: 0 bytes in 0 blocks +==24972== still reachable: 24 bytes in 2 blocks +==24972== suppressed: 618,710 bytes in 8,246 blocks +==24972== Reachable blocks (those to which a pointer was found) are not shown. +==24972== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24972== +==24972== For lists of detected and suppressed errors, rerun with: -s +==24972== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestSimpleNonlinearEllipticSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSimpleNonlinearEllipticSolver_valgrind.txt new file mode 100644 index 000000000..4fbc5f61a --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSimpleNonlinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24987== Memcheck, a memory error detector +==24987== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24987== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24987== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleNonlinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==24987== Parent PID: 23903 +==24987== +==24987== +==24987== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24987== Open file descriptor 12: +==24987== at 0x84E707D: pipe (pipe.c:29) +==24987== by 0x104D507D: ??? +==24987== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24987== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24987== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24987== by 0x6AACD38: PetscInitialize (pinit.c:924) +==24987== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24987== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24987== by 0x14D424: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24987== by 0x14766F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24987== by 0x14A908: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24987== by 0x14A7A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24987== by 0x14AE3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24987== by 0x1458D5: main (TestSimpleNonlinearEllipticSolver.cpp:19) +==24987== +==24987== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24987== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==24987== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24987== by 0x7D3B822: ??? +==24987== by 0x7D3B96F: ??? +==24987== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24987== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24987== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24987== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24987== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24987== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24987== by 0x6AACD38: PetscInitialize (pinit.c:924) +==24987== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24987== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24987== by 0x14D424: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24987== by 0x14766F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24987== by 0x14A908: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24987== by 0x14A7A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24987== by 0x14AE3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24987== by 0x1458D5: main (TestSimpleNonlinearEllipticSolver.cpp:19) +==24987== +==24987== Open file descriptor 115: +==24987== +==24987== +==24987== Open file descriptor 112: +==24987== +==24987== +==24987== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleNonlinearEllipticSolver_valgrind.txt +==24987== +==24987== +==24987== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24987== +==24987== +==24987== +==24987== HEAP SUMMARY: +==24987== in use at exit: 618,183 bytes in 8,234 blocks +==24987== total heap usage: 390,359 allocs, 382,125 frees, 1,347,161,482 bytes allocated +==24987== +==24987== LEAK SUMMARY: +==24987== definitely lost: 0 bytes in 0 blocks +==24987== indirectly lost: 0 bytes in 0 blocks +==24987== possibly lost: 0 bytes in 0 blocks +==24987== still reachable: 24 bytes in 2 blocks +==24987== suppressed: 618,159 bytes in 8,232 blocks +==24987== Reachable blocks (those to which a pointer was found) are not shown. +==24987== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24987== +==24987== For lists of detected and suppressed errors, rerun with: -s +==24987== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-07_08-54-51/TestSimpleTargetAreaModifier_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSimpleTargetAreaModifier_valgrind.txt new file mode 100644 index 000000000..8c31d0a69 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSimpleTargetAreaModifier_valgrind.txt @@ -0,0 +1,73 @@ +==37719== Memcheck, a memory error detector +==37719== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==37719== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==37719== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimpleTargetAreaModifier -malloc_debug -malloc_dump -memory_info +==37719== Parent PID: 23903 +==37719== +==37719== +==37719== FILE DESCRIPTORS: 9 open (3 std) at exit. +==37719== Open file descriptor 12: +==37719== at 0x10CF207D: pipe (pipe.c:29) +==37719== by 0x196AD07D: ??? +==37719== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==37719== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37719== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37719== by 0xF28AD38: PetscInitialize (pinit.c:924) +==37719== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==37719== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==37719== by 0x139D63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==37719== by 0x1324DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==37719== by 0x1357DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==37719== by 0x13567C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==37719== by 0x135D13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==37719== by 0x130905: main (TestSimpleTargetAreaModifier.cpp:19) +==37719== +==37719== Open file descriptor 8: /dev/shm/open_mpi.0000 +==37719== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==37719== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==37719== by 0xF136822: ??? +==37719== by 0xF13696F: ??? +==37719== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37719== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37719== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37719== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==37719== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37719== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37719== by 0xF28AD38: PetscInitialize (pinit.c:924) +==37719== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==37719== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==37719== by 0x139D63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==37719== by 0x1324DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==37719== by 0x1357DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==37719== by 0x13567C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==37719== by 0x135D13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==37719== by 0x130905: main (TestSimpleTargetAreaModifier.cpp:19) +==37719== +==37719== Open file descriptor 115: +==37719== +==37719== +==37719== Open file descriptor 112: +==37719== +==37719== +==37719== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleTargetAreaModifier_valgrind.txt +==37719== +==37719== +==37719== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==37719== +==37719== +==37719== +==37719== HEAP SUMMARY: +==37719== in use at exit: 618,350 bytes in 8,239 blocks +==37719== total heap usage: 588,725 allocs, 580,486 frees, 1,437,137,072 bytes allocated +==37719== +==37719== LEAK SUMMARY: +==37719== definitely lost: 0 bytes in 0 blocks +==37719== indirectly lost: 0 bytes in 0 blocks +==37719== possibly lost: 0 bytes in 0 blocks +==37719== still reachable: 56 bytes in 3 blocks +==37719== suppressed: 618,294 bytes in 8,236 blocks +==37719== Reachable blocks (those to which a pointer was found) are not shown. +==37719== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==37719== +==37719== For lists of detected and suppressed errors, rerun with: -s +==37719== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestSimulationTime_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSimulationTime_valgrind.txt new file mode 100644 index 000000000..6bfc5c2c7 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSimulationTime_valgrind.txt @@ -0,0 +1,73 @@ +==25654== Memcheck, a memory error detector +==25654== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25654== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25654== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationTime -malloc_debug -malloc_dump -memory_info +==25654== Parent PID: 23903 +==25654== +==25654== +==25654== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25654== Open file descriptor 12: +==25654== at 0xD89B07D: pipe (pipe.c:29) +==25654== by 0x196AC07D: ??? +==25654== by 0x14C654CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25654== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25654== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25654== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25654== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25654== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25654== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25654== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25654== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25654== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25654== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25654== by 0x154225: main (TestSimulationTime.cpp:19) +==25654== +==25654== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25654== at 0xD89FA1C: __open_nocancel (open64_nocancel.c:39) +==25654== by 0xD823BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25654== by 0xD4D9822: ??? +==25654== by 0xD4D996F: ??? +==25654== by 0x14D0A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25654== by 0x14D0A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25654== by 0x14CC0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25654== by 0x14C652DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25654== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25654== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25654== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25654== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25654== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25654== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25654== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25654== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25654== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25654== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25654== by 0x154225: main (TestSimulationTime.cpp:19) +==25654== +==25654== Open file descriptor 115: +==25654== +==25654== +==25654== Open file descriptor 112: +==25654== +==25654== +==25654== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationTime_valgrind.txt +==25654== +==25654== +==25654== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25654== +==25654== +==25654== +==25654== HEAP SUMMARY: +==25654== in use at exit: 618,318 bytes in 8,238 blocks +==25654== total heap usage: 53,204 allocs, 44,966 frees, 1,338,921,323 bytes allocated +==25654== +==25654== LEAK SUMMARY: +==25654== definitely lost: 0 bytes in 0 blocks +==25654== indirectly lost: 0 bytes in 0 blocks +==25654== possibly lost: 0 bytes in 0 blocks +==25654== still reachable: 24 bytes in 2 blocks +==25654== suppressed: 618,294 bytes in 8,236 blocks +==25654== Reachable blocks (those to which a pointer was found) are not shown. +==25654== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25654== +==25654== For lists of detected and suppressed errors, rerun with: -s +==25654== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..b5c2d31bf --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25436== Memcheck, a memory error detector +==25436== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25436== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25436== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithEllipticBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25436== Parent PID: 23903 +==25436== +==25436== +==25436== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25436== Open file descriptor 12: +==25436== at 0x1104D07D: pipe (pipe.c:29) +==25436== by 0x196AC07D: ??? +==25436== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25436== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25436== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25436== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25436== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25436== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25436== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25436== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25436== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25436== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25436== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25436== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) +==25436== +==25436== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25436== at 0x11051A1C: __open_nocancel (open64_nocancel.c:39) +==25436== by 0x10FD5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25436== by 0x10851822: ??? +==25436== by 0x1085196F: ??? +==25436== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25436== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25436== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25436== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25436== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25436== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25436== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25436== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25436== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25436== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25436== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25436== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25436== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25436== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25436== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) +==25436== +==25436== Open file descriptor 115: +==25436== +==25436== +==25436== Open file descriptor 112: +==25436== +==25436== +==25436== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt +==25436== +==25436== +==25436== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25436== +==25436== +==25436== +==25436== HEAP SUMMARY: +==25436== in use at exit: 618,279 bytes in 8,235 blocks +==25436== total heap usage: 7,729,905 allocs, 7,721,670 frees, 2,182,172,465 bytes allocated +==25436== +==25436== LEAK SUMMARY: +==25436== definitely lost: 0 bytes in 0 blocks +==25436== indirectly lost: 0 bytes in 0 blocks +==25436== possibly lost: 0 bytes in 0 blocks +==25436== still reachable: 56 bytes in 3 blocks +==25436== suppressed: 618,223 bytes in 8,232 blocks +==25436== Reachable blocks (those to which a pointer was found) are not shown. +==25436== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25436== +==25436== For lists of detected and suppressed errors, rerun with: -s +==25436== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..8ef8a7c01 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25457== Memcheck, a memory error detector +==25457== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25457== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25457== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithEllipticGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25457== Parent PID: 23903 +==25457== +==25457== +==25457== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25457== Open file descriptor 12: +==25457== at 0x1104D07D: pipe (pipe.c:29) +==25457== by 0x196AC07D: ??? +==25457== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25457== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25457== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25457== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25457== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25457== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25457== by 0x12F3BB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25457== by 0x12A2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25457== by 0x12CDFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25457== by 0x12CC9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25457== by 0x12D333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25457== by 0x1286D5: main (TestSimulationsWithEllipticGrowingDomainPdeModifier.cpp:19) +==25457== +==25457== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25457== at 0x11051A1C: __open_nocancel (open64_nocancel.c:39) +==25457== by 0x10FD5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25457== by 0x10851822: ??? +==25457== by 0x1085196F: ??? +==25457== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25457== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25457== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25457== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25457== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25457== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25457== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25457== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25457== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25457== by 0x12F3BB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25457== by 0x12A2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25457== by 0x12CDFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25457== by 0x12CC9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25457== by 0x12D333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25457== by 0x1286D5: main (TestSimulationsWithEllipticGrowingDomainPdeModifier.cpp:19) +==25457== +==25457== Open file descriptor 115: +==25457== +==25457== +==25457== Open file descriptor 112: +==25457== +==25457== +==25457== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt +==25457== +==25457== +==25457== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25457== +==25457== +==25457== +==25457== HEAP SUMMARY: +==25457== in use at exit: 618,279 bytes in 8,235 blocks +==25457== total heap usage: 5,204,529 allocs, 5,196,294 frees, 2,319,825,422 bytes allocated +==25457== +==25457== LEAK SUMMARY: +==25457== definitely lost: 0 bytes in 0 blocks +==25457== indirectly lost: 0 bytes in 0 blocks +==25457== possibly lost: 0 bytes in 0 blocks +==25457== still reachable: 56 bytes in 3 blocks +==25457== suppressed: 618,223 bytes in 8,232 blocks +==25457== Reachable blocks (those to which a pointer was found) are not shown. +==25457== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25457== +==25457== For lists of detected and suppressed errors, rerun with: -s +==25457== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..651ba562f --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25555== Memcheck, a memory error detector +==25555== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25555== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25555== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithParabolicBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25555== Parent PID: 23903 +==25555== +==25555== +==25555== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25555== Open file descriptor 12: +==25555== at 0x1104D07D: pipe (pipe.c:29) +==25555== by 0x196AC07D: ??? +==25555== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25555== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25555== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25555== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25555== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25555== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25555== by 0x129501: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25555== by 0x1249F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25555== by 0x126F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25555== by 0x126E65: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25555== by 0x127479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25555== by 0x1231F5: main (TestSimulationsWithParabolicBoxDomainPdeModifier.cpp:18) +==25555== +==25555== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25555== at 0x11051A1C: __open_nocancel (open64_nocancel.c:39) +==25555== by 0x10FD5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25555== by 0x10851822: ??? +==25555== by 0x1085196F: ??? +==25555== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25555== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25555== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25555== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25555== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25555== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25555== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25555== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25555== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25555== by 0x129501: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25555== by 0x1249F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25555== by 0x126F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25555== by 0x126E65: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25555== by 0x127479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25555== by 0x1231F5: main (TestSimulationsWithParabolicBoxDomainPdeModifier.cpp:18) +==25555== +==25555== Open file descriptor 115: +==25555== +==25555== +==25555== Open file descriptor 112: +==25555== +==25555== +==25555== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt +==25555== +==25555== +==25555== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25555== +==25555== +==25555== +==25555== HEAP SUMMARY: +==25555== in use at exit: 618,279 bytes in 8,235 blocks +==25555== total heap usage: 4,507,754 allocs, 4,499,519 frees, 1,826,816,114 bytes allocated +==25555== +==25555== LEAK SUMMARY: +==25555== definitely lost: 0 bytes in 0 blocks +==25555== indirectly lost: 0 bytes in 0 blocks +==25555== possibly lost: 0 bytes in 0 blocks +==25555== still reachable: 56 bytes in 3 blocks +==25555== suppressed: 618,223 bytes in 8,232 blocks +==25555== Reachable blocks (those to which a pointer was found) are not shown. +==25555== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25555== +==25555== For lists of detected and suppressed errors, rerun with: -s +==25555== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..642bc8b2c --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25598== Memcheck, a memory error detector +==25598== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25598== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25598== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithParabolicGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25598== Parent PID: 23903 +==25598== +==25598== +==25598== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25598== Open file descriptor 12: +==25598== at 0x1104D07D: pipe (pipe.c:29) +==25598== by 0x196AC07D: ??? +==25598== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25598== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25598== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25598== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25598== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25598== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25598== by 0x128F89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25598== by 0x123EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25598== by 0x1269CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25598== by 0x12686A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25598== by 0x126F01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25598== by 0x1222D5: main (TestSimulationsWithParabolicGrowingDomainPdeModifier.cpp:19) +==25598== +==25598== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25598== at 0x11051A1C: __open_nocancel (open64_nocancel.c:39) +==25598== by 0x10FD5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25598== by 0x10851822: ??? +==25598== by 0x1085196F: ??? +==25598== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25598== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25598== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25598== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25598== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25598== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25598== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25598== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25598== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25598== by 0x128F89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25598== by 0x123EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25598== by 0x1269CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25598== by 0x12686A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25598== by 0x126F01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25598== by 0x1222D5: main (TestSimulationsWithParabolicGrowingDomainPdeModifier.cpp:19) +==25598== +==25598== Open file descriptor 115: +==25598== +==25598== +==25598== Open file descriptor 112: +==25598== +==25598== +==25598== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt +==25598== +==25598== +==25598== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25598== +==25598== +==25598== +==25598== HEAP SUMMARY: +==25598== in use at exit: 618,279 bytes in 8,235 blocks +==25598== total heap usage: 5,580,603 allocs, 5,572,368 frees, 1,885,910,831 bytes allocated +==25598== +==25598== LEAK SUMMARY: +==25598== definitely lost: 0 bytes in 0 blocks +==25598== indirectly lost: 0 bytes in 0 blocks +==25598== possibly lost: 0 bytes in 0 blocks +==25598== still reachable: 56 bytes in 3 blocks +==25598== suppressed: 618,223 bytes in 8,232 blocks +==25598== Reachable blocks (those to which a pointer was found) are not shown. +==25598== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25598== +==25598== For lists of detected and suppressed errors, rerun with: -s +==25598== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestSingleOdeWntCellCycleModel_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSingleOdeWntCellCycleModel_valgrind.txt new file mode 100644 index 000000000..aeedc383a --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSingleOdeWntCellCycleModel_valgrind.txt @@ -0,0 +1,73 @@ +==40147== Memcheck, a memory error detector +==40147== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40147== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40147== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSingleOdeWntCellCycleModel -malloc_debug -malloc_dump -memory_info +==40147== Parent PID: 23903 +==40147== +==40147== +==40147== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40147== Open file descriptor 12: +==40147== at 0x1095707D: pipe (pipe.c:29) +==40147== by 0x1B36D07D: ??? +==40147== by 0x154C04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40147== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40147== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40147== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40147== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40147== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40147== by 0x18BB23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40147== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40147== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40147== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40147== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40147== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) +==40147== +==40147== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40147== at 0x1095BA1C: __open_nocancel (open64_nocancel.c:39) +==40147== by 0x108DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40147== by 0xED9B822: ??? +==40147== by 0xED9B96F: ??? +==40147== by 0x155656DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40147== by 0x15565938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40147== by 0x1551B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40147== by 0x154C02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40147== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40147== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40147== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40147== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40147== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40147== by 0x18BB23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40147== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40147== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40147== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40147== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40147== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) +==40147== +==40147== Open file descriptor 115: +==40147== +==40147== +==40147== Open file descriptor 112: +==40147== +==40147== +==40147== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSingleOdeWntCellCycleModel_valgrind.txt +==40147== +==40147== +==40147== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40147== +==40147== +==40147== +==40147== HEAP SUMMARY: +==40147== in use at exit: 618,510 bytes in 8,241 blocks +==40147== total heap usage: 263,091 allocs, 254,850 frees, 1,357,294,564 bytes allocated +==40147== +==40147== LEAK SUMMARY: +==40147== definitely lost: 0 bytes in 0 blocks +==40147== indirectly lost: 0 bytes in 0 blocks +==40147== possibly lost: 0 bytes in 0 blocks +==40147== still reachable: 200 bytes in 5 blocks +==40147== suppressed: 618,310 bytes in 8,236 blocks +==40147== Reachable blocks (those to which a pointer was found) are not shown. +==40147== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40147== +==40147== For lists of detected and suppressed errors, rerun with: -s +==40147== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestSloughingCellKillers_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSloughingCellKillers_valgrind.txt new file mode 100644 index 000000000..7fed02ef0 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSloughingCellKillers_valgrind.txt @@ -0,0 +1,73 @@ +==40345== Memcheck, a memory error detector +==40345== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40345== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40345== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSloughingCellKillers -malloc_debug -malloc_dump -memory_info +==40345== Parent PID: 23903 +==40345== +==40345== +==40345== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40345== Open file descriptor 12: +==40345== at 0x1269907D: pipe (pipe.c:29) +==40345== by 0x1B36D07D: ??? +==40345== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40345== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40345== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40345== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40345== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40345== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40345== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40345== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40345== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40345== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40345== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40345== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) +==40345== +==40345== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40345== at 0x1269DA1C: __open_nocancel (open64_nocancel.c:39) +==40345== by 0x12621BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40345== by 0x109F6822: ??? +==40345== by 0x109F696F: ??? +==40345== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40345== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40345== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40345== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40345== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40345== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40345== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40345== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40345== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40345== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40345== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40345== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40345== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40345== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40345== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) +==40345== +==40345== Open file descriptor 115: +==40345== +==40345== +==40345== Open file descriptor 112: +==40345== +==40345== +==40345== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSloughingCellKillers_valgrind.txt +==40345== +==40345== +==40345== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40345== +==40345== +==40345== +==40345== HEAP SUMMARY: +==40345== in use at exit: 618,366 bytes in 8,239 blocks +==40345== total heap usage: 100,674 allocs, 92,435 frees, 1,342,470,617 bytes allocated +==40345== +==40345== LEAK SUMMARY: +==40345== definitely lost: 0 bytes in 0 blocks +==40345== indirectly lost: 0 bytes in 0 blocks +==40345== possibly lost: 0 bytes in 0 blocks +==40345== still reachable: 56 bytes in 3 blocks +==40345== suppressed: 618,310 bytes in 8,236 blocks +==40345== Reachable blocks (those to which a pointer was found) are not shown. +==40345== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40345== +==40345== For lists of detected and suppressed errors, rerun with: -s +==40345== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestSolveLaplacianWithQuadratics_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSolveLaplacianWithQuadratics_valgrind.txt new file mode 100644 index 000000000..7293a6d39 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSolveLaplacianWithQuadratics_valgrind.txt @@ -0,0 +1,73 @@ +==24990== Memcheck, a memory error detector +==24990== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24990== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24990== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolveLaplacianWithQuadratics -malloc_debug -malloc_dump -memory_info +==24990== Parent PID: 23903 +==24990== +==24990== +==24990== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24990== Open file descriptor 12: +==24990== at 0x84E707D: pipe (pipe.c:29) +==24990== by 0x104D507D: ??? +==24990== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24990== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24990== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24990== by 0x6AACD38: PetscInitialize (pinit.c:924) +==24990== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24990== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24990== by 0x15D32E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24990== by 0x1582D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24990== by 0x15AFE6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24990== by 0x15AEE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24990== by 0x15B4F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24990== by 0x156AD5: main (TestSolveLaplacianWithQuadratics.cpp:18) +==24990== +==24990== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24990== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==24990== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24990== by 0x7D3B822: ??? +==24990== by 0x7D3B96F: ??? +==24990== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24990== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24990== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24990== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24990== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24990== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24990== by 0x6AACD38: PetscInitialize (pinit.c:924) +==24990== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24990== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24990== by 0x15D32E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24990== by 0x1582D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24990== by 0x15AFE6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24990== by 0x15AEE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24990== by 0x15B4F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24990== by 0x156AD5: main (TestSolveLaplacianWithQuadratics.cpp:18) +==24990== +==24990== Open file descriptor 115: +==24990== +==24990== +==24990== Open file descriptor 112: +==24990== +==24990== +==24990== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolveLaplacianWithQuadratics_valgrind.txt +==24990== +==24990== +==24990== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24990== +==24990== +==24990== +==24990== HEAP SUMMARY: +==24990== in use at exit: 618,254 bytes in 8,238 blocks +==24990== total heap usage: 317,734 allocs, 309,496 frees, 1,357,888,362 bytes allocated +==24990== +==24990== LEAK SUMMARY: +==24990== definitely lost: 0 bytes in 0 blocks +==24990== indirectly lost: 0 bytes in 0 blocks +==24990== possibly lost: 0 bytes in 0 blocks +==24990== still reachable: 24 bytes in 2 blocks +==24990== suppressed: 618,230 bytes in 8,236 blocks +==24990== Reachable blocks (those to which a pointer was found) are not shown. +==24990== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24990== +==24990== For lists of detected and suppressed errors, rerun with: -s +==24990== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestSolvingCoupledPdes_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSolvingCoupledPdes_valgrind.txt new file mode 100644 index 000000000..22bb90906 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSolvingCoupledPdes_valgrind.txt @@ -0,0 +1,73 @@ +==24988== Memcheck, a memory error detector +==24988== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24988== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24988== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolvingCoupledPdes -malloc_debug -malloc_dump -memory_info +==24988== Parent PID: 23903 +==24988== +==24988== +==24988== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24988== Open file descriptor 12: +==24988== at 0x84E707D: pipe (pipe.c:29) +==24988== by 0x104D507D: ??? +==24988== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24988== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24988== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24988== by 0x6AACD38: PetscInitialize (pinit.c:924) +==24988== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24988== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24988== by 0x143C06: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24988== by 0x13ECB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24988== by 0x1418BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24988== by 0x1417B9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24988== by 0x141DCD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24988== by 0x13D4B5: main (TestSolvingCoupledPdes.cpp:18) +==24988== +==24988== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24988== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==24988== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24988== by 0x7D3B822: ??? +==24988== by 0x7D3B96F: ??? +==24988== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24988== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24988== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24988== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24988== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24988== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24988== by 0x6AACD38: PetscInitialize (pinit.c:924) +==24988== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24988== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24988== by 0x143C06: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24988== by 0x13ECB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24988== by 0x1418BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24988== by 0x1417B9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24988== by 0x141DCD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24988== by 0x13D4B5: main (TestSolvingCoupledPdes.cpp:18) +==24988== +==24988== Open file descriptor 115: +==24988== +==24988== +==24988== Open file descriptor 112: +==24988== +==24988== +==24988== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingCoupledPdes_valgrind.txt +==24988== +==24988== +==24988== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24988== +==24988== +==24988== +==24988== HEAP SUMMARY: +==24988== in use at exit: 618,254 bytes in 8,238 blocks +==24988== total heap usage: 362,665 allocs, 354,427 frees, 1,353,739,432 bytes allocated +==24988== +==24988== LEAK SUMMARY: +==24988== definitely lost: 0 bytes in 0 blocks +==24988== indirectly lost: 0 bytes in 0 blocks +==24988== possibly lost: 0 bytes in 0 blocks +==24988== still reachable: 24 bytes in 2 blocks +==24988== suppressed: 618,230 bytes in 8,236 blocks +==24988== Reachable blocks (those to which a pointer was found) are not shown. +==24988== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24988== +==24988== For lists of detected and suppressed errors, rerun with: -s +==24988== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestSolvingNonlinearPdesTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSolvingNonlinearPdesTutorial_valgrind.txt new file mode 100644 index 000000000..2b5ae881d --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSolvingNonlinearPdesTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==25011== Memcheck, a memory error detector +==25011== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25011== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25011== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolvingNonlinearPdesTutorial -malloc_debug -malloc_dump -memory_info +==25011== Parent PID: 23903 +==25011== +==25011== +==25011== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25011== Open file descriptor 12: +==25011== at 0x84E707D: pipe (pipe.c:29) +==25011== by 0x104D507D: ??? +==25011== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25011== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25011== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25011== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25011== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25011== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25011== by 0x1389EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25011== by 0x133AFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25011== by 0x1366A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25011== by 0x1365A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25011== by 0x136BB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25011== by 0x1322D5: main (TestSolvingNonlinearPdesTutorial.cpp:18) +==25011== +==25011== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25011== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25011== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25011== by 0x7D3B822: ??? +==25011== by 0x7D3B96F: ??? +==25011== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25011== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25011== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25011== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25011== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25011== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25011== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25011== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25011== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25011== by 0x1389EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25011== by 0x133AFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25011== by 0x1366A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25011== by 0x1365A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25011== by 0x136BB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25011== by 0x1322D5: main (TestSolvingNonlinearPdesTutorial.cpp:18) +==25011== +==25011== Open file descriptor 115: +==25011== +==25011== +==25011== Open file descriptor 112: +==25011== +==25011== +==25011== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingNonlinearPdesTutorial_valgrind.txt +==25011== +==25011== +==25011== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25011== +==25011== +==25011== +==25011== HEAP SUMMARY: +==25011== in use at exit: 618,254 bytes in 8,238 blocks +==25011== total heap usage: 243,598 allocs, 235,360 frees, 1,341,284,537 bytes allocated +==25011== +==25011== LEAK SUMMARY: +==25011== definitely lost: 0 bytes in 0 blocks +==25011== indirectly lost: 0 bytes in 0 blocks +==25011== possibly lost: 0 bytes in 0 blocks +==25011== still reachable: 24 bytes in 2 blocks +==25011== suppressed: 618,230 bytes in 8,236 blocks +==25011== Reachable blocks (those to which a pointer was found) are not shown. +==25011== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25011== +==25011== For lists of detected and suppressed errors, rerun with: -s +==25011== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestSolvingOdesTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSolvingOdesTutorial_valgrind.txt new file mode 100644 index 000000000..eb01a6c74 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSolvingOdesTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==24913== Memcheck, a memory error detector +==24913== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24913== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24913== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestSolvingOdesTutorial -malloc_debug -malloc_dump -memory_info +==24913== Parent PID: 23903 +==24913== +==24913== +==24913== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24913== Open file descriptor 12: +==24913== at 0x63C507D: pipe (pipe.c:29) +==24913== by 0xB1E407D: ??? +==24913== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24913== by 0x5FFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24913== by 0x5F93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24913== by 0x4C65D38: PetscInitialize (pinit.c:924) +==24913== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24913== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24913== by 0x118D39: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24913== by 0x114693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24913== by 0x1169AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24913== by 0x1168A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24913== by 0x116EBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24913== by 0x1128D5: main (TestSolvingOdesTutorial.cpp:18) +==24913== +==24913== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24913== at 0x63C9A1C: __open_nocancel (open64_nocancel.c:39) +==24913== by 0x634DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24913== by 0x5EF4822: ??? +==24913== by 0x5EF496F: ??? +==24913== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24913== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24913== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24913== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24913== by 0x5FFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24913== by 0x5F93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24913== by 0x4C65D38: PetscInitialize (pinit.c:924) +==24913== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24913== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24913== by 0x118D39: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24913== by 0x114693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24913== by 0x1169AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24913== by 0x1168A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24913== by 0x116EBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24913== by 0x1128D5: main (TestSolvingOdesTutorial.cpp:18) +==24913== +==24913== Open file descriptor 115: +==24913== +==24913== +==24913== Open file descriptor 112: +==24913== +==24913== +==24913== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingOdesTutorial_valgrind.txt +==24913== +==24913== +==24913== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24913== +==24913== +==24913== +==24913== HEAP SUMMARY: +==24913== in use at exit: 617,902 bytes in 8,238 blocks +==24913== total heap usage: 45,184 allocs, 36,946 frees, 1,338,244,359 bytes allocated +==24913== +==24913== LEAK SUMMARY: +==24913== definitely lost: 0 bytes in 0 blocks +==24913== indirectly lost: 0 bytes in 0 blocks +==24913== possibly lost: 0 bytes in 0 blocks +==24913== still reachable: 24 bytes in 2 blocks +==24913== suppressed: 617,878 bytes in 8,236 blocks +==24913== Reachable blocks (those to which a pointer was found) are not shown. +==24913== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24913== +==24913== For lists of detected and suppressed errors, rerun with: -s +==24913== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestSolvingStiffOdeSystems_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSolvingStiffOdeSystems_valgrind.txt new file mode 100644 index 000000000..8c36c5691 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSolvingStiffOdeSystems_valgrind.txt @@ -0,0 +1,73 @@ +==24893== Memcheck, a memory error detector +==24893== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24893== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24893== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestSolvingStiffOdeSystems -malloc_debug -malloc_dump -memory_info +==24893== Parent PID: 23903 +==24893== +==24893== +==24893== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24893== Open file descriptor 12: +==24893== at 0x4F1007D: pipe (pipe.c:29) +==24893== by 0xB1E607D: ??? +==24893== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24893== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24893== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24893== by 0x5308D38: PetscInitialize (pinit.c:924) +==24893== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24893== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24893== by 0x118D00: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24893== by 0x114431: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24893== by 0x1167AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24893== by 0x1166A9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24893== by 0x116CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24893== by 0x112835: main (TestSolvingStiffOdeSystems.cpp:18) +==24893== +==24893== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24893== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39) +==24893== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24893== by 0x4B76822: ??? +==24893== by 0x4B7696F: ??? +==24893== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24893== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24893== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24893== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24893== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24893== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24893== by 0x5308D38: PetscInitialize (pinit.c:924) +==24893== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24893== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24893== by 0x118D00: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24893== by 0x114431: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24893== by 0x1167AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24893== by 0x1166A9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24893== by 0x116CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24893== by 0x112835: main (TestSolvingStiffOdeSystems.cpp:18) +==24893== +==24893== Open file descriptor 115: +==24893== +==24893== +==24893== Open file descriptor 112: +==24893== +==24893== +==24893== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingStiffOdeSystems_valgrind.txt +==24893== +==24893== +==24893== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24893== +==24893== +==24893== +==24893== HEAP SUMMARY: +==24893== in use at exit: 617,902 bytes in 8,238 blocks +==24893== total heap usage: 47,083 allocs, 38,845 frees, 1,338,228,030 bytes allocated +==24893== +==24893== LEAK SUMMARY: +==24893== definitely lost: 0 bytes in 0 blocks +==24893== indirectly lost: 0 bytes in 0 blocks +==24893== possibly lost: 0 bytes in 0 blocks +==24893== still reachable: 24 bytes in 2 blocks +==24893== suppressed: 617,878 bytes in 8,236 blocks +==24893== Reachable blocks (those to which a pointer was found) are not shown. +==24893== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24893== +==24893== For lists of detected and suppressed errors, rerun with: -s +==24893== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestSpiralWaveAndPhase_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSpiralWaveAndPhase_valgrind.txt new file mode 100644 index 000000000..22e20062e --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSpiralWaveAndPhase_valgrind.txt @@ -0,0 +1,73 @@ +==43344== Memcheck, a memory error detector +==43344== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43344== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43344== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestSpiralWaveAndPhase -malloc_debug -malloc_dump -memory_info +==43344== Parent PID: 23903 +==43344== +==43344== +==43344== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43344== Open file descriptor 12: +==43344== at 0x84CB07D: pipe (pipe.c:29) +==43344== by 0x104D507D: ??? +==43344== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43344== by 0x8B4E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43344== by 0x8AE7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43344== by 0x6A90D38: PetscInitialize (pinit.c:924) +==43344== by 0x69671D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43344== by 0x6967227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43344== by 0x119000: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43344== by 0x1147B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43344== by 0x116FAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43344== by 0x116EA7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43344== by 0x1174BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43344== by 0x112FB5: main (TestSpiralWaveAndPhase.cpp:18) +==43344== +==43344== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43344== at 0x84CFA1C: __open_nocancel (open64_nocancel.c:39) +==43344== by 0x8453BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43344== by 0x7D1F822: ??? +==43344== by 0x7D1F96F: ??? +==43344== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43344== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43344== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43344== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43344== by 0x8B4E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43344== by 0x8AE7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43344== by 0x6A90D38: PetscInitialize (pinit.c:924) +==43344== by 0x69671D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43344== by 0x6967227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43344== by 0x119000: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43344== by 0x1147B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43344== by 0x116FAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43344== by 0x116EA7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43344== by 0x1174BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43344== by 0x112FB5: main (TestSpiralWaveAndPhase.cpp:18) +==43344== +==43344== Open file descriptor 115: +==43344== +==43344== +==43344== Open file descriptor 112: +==43344== +==43344== +==43344== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSpiralWaveAndPhase_valgrind.txt +==43344== +==43344== +==43344== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43344== +==43344== +==43344== +==43344== HEAP SUMMARY: +==43344== in use at exit: 618,663 bytes in 8,244 blocks +==43344== total heap usage: 4,351,540 allocs, 4,343,296 frees, 1,902,290,536 bytes allocated +==43344== +==43344== LEAK SUMMARY: +==43344== definitely lost: 0 bytes in 0 blocks +==43344== indirectly lost: 0 bytes in 0 blocks +==43344== possibly lost: 0 bytes in 0 blocks +==43344== still reachable: 24 bytes in 2 blocks +==43344== suppressed: 618,639 bytes in 8,242 blocks +==43344== Reachable blocks (those to which a pointer was found) are not shown. +==43344== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43344== +==43344== For lists of detected and suppressed errors, rerun with: -s +==43344== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestSteadyStateRunner_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSteadyStateRunner_valgrind.txt new file mode 100644 index 000000000..386ed9028 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSteadyStateRunner_valgrind.txt @@ -0,0 +1,73 @@ +==42543== Memcheck, a memory error detector +==42543== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42543== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42543== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestSteadyStateRunner -malloc_debug -malloc_dump -memory_info +==42543== Parent PID: 23903 +==42543== +==42543== +==42543== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42543== Open file descriptor 12: +==42543== at 0x9C6507D: pipe (pipe.c:29) +==42543== by 0x1432407D: ??? +==42543== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42543== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42543== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42543== by 0x8505D38: PetscInitialize (pinit.c:924) +==42543== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42543== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42543== by 0x115FF5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42543== by 0x1114AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42543== by 0x113CD0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42543== by 0x113B70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42543== by 0x114207: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42543== by 0x10F8D5: main (TestSteadyStateRunner.cpp:19) +==42543== +==42543== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42543== at 0x9C69A1C: __open_nocancel (open64_nocancel.c:39) +==42543== by 0x9BEDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42543== by 0x9794822: ??? +==42543== by 0x979496F: ??? +==42543== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42543== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42543== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42543== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42543== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42543== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42543== by 0x8505D38: PetscInitialize (pinit.c:924) +==42543== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42543== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42543== by 0x115FF5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42543== by 0x1114AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42543== by 0x113CD0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42543== by 0x113B70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42543== by 0x114207: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42543== by 0x10F8D5: main (TestSteadyStateRunner.cpp:19) +==42543== +==42543== Open file descriptor 115: +==42543== +==42543== +==42543== Open file descriptor 112: +==42543== +==42543== +==42543== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSteadyStateRunner_valgrind.txt +==42543== +==42543== +==42543== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42543== +==42543== +==42543== +==42543== HEAP SUMMARY: +==42543== in use at exit: 618,263 bytes in 8,234 blocks +==42543== total heap usage: 50,555 allocs, 42,321 frees, 1,338,884,769 bytes allocated +==42543== +==42543== LEAK SUMMARY: +==42543== definitely lost: 0 bytes in 0 blocks +==42543== indirectly lost: 0 bytes in 0 blocks +==42543== possibly lost: 0 bytes in 0 blocks +==42543== still reachable: 24 bytes in 2 blocks +==42543== suppressed: 618,239 bytes in 8,232 blocks +==42543== Reachable blocks (those to which a pointer was found) are not shown. +==42543== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42543== +==42543== For lists of detected and suppressed errors, rerun with: -s +==42543== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestStepSizeException_valgrind.txt b/log-files/2024-09-07_08-54-51/TestStepSizeException_valgrind.txt new file mode 100644 index 000000000..53cf1baaf --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestStepSizeException_valgrind.txt @@ -0,0 +1,73 @@ +==39443== Memcheck, a memory error detector +==39443== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39443== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39443== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestStepSizeException -malloc_debug -malloc_dump -memory_info +==39443== Parent PID: 23903 +==39443== +==39443== +==39443== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39443== Open file descriptor 12: +==39443== at 0x4CB407D: pipe (pipe.c:29) +==39443== by 0xAEA507D: ??? +==39443== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39443== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39443== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39443== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==39443== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39443== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39443== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39443== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39443== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39443== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39443== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39443== by 0x10D735: main (TestStepSizeException.cpp:19) +==39443== +==39443== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39443== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==39443== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39443== by 0x4934822: ??? +==39443== by 0x493496F: ??? +==39443== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39443== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39443== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39443== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39443== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39443== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39443== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==39443== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39443== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39443== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39443== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39443== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39443== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39443== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39443== by 0x10D735: main (TestStepSizeException.cpp:19) +==39443== +==39443== Open file descriptor 115: +==39443== +==39443== +==39443== Open file descriptor 112: +==39443== +==39443== +==39443== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStepSizeException_valgrind.txt +==39443== +==39443== +==39443== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39443== +==39443== +==39443== +==39443== HEAP SUMMARY: +==39443== in use at exit: 617,838 bytes in 8,238 blocks +==39443== total heap usage: 44,916 allocs, 36,678 frees, 1,338,159,743 bytes allocated +==39443== +==39443== LEAK SUMMARY: +==39443== definitely lost: 0 bytes in 0 blocks +==39443== indirectly lost: 0 bytes in 0 blocks +==39443== possibly lost: 0 bytes in 0 blocks +==39443== still reachable: 24 bytes in 2 blocks +==39443== suppressed: 617,814 bytes in 8,236 blocks +==39443== Reachable blocks (those to which a pointer was found) are not shown. +==39443== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39443== +==39443== For lists of detected and suppressed errors, rerun with: -s +==39443== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestStimulusBoundaryCondition_valgrind.txt b/log-files/2024-09-07_08-54-51/TestStimulusBoundaryCondition_valgrind.txt new file mode 100644 index 000000000..4f4360f53 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestStimulusBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==43396== Memcheck, a memory error detector +==43396== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43396== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43396== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulusBoundaryCondition -malloc_debug -malloc_dump -memory_info +==43396== Parent PID: 23903 +==43396== +==43396== +==43396== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43396== Open file descriptor 12: +==43396== at 0xA56407D: pipe (pipe.c:29) +==43396== by 0x1432407D: ??? +==43396== by 0xFADE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43396== by 0xBC5F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43396== by 0xBBF8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43396== by 0xA8EFD38: PetscInitialize (pinit.c:924) +==43396== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43396== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43396== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43396== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43396== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43396== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43396== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43396== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) +==43396== +==43396== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43396== at 0xA568A1C: __open_nocancel (open64_nocancel.c:39) +==43396== by 0xA4ECBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43396== by 0xA1CC822: ??? +==43396== by 0xA1CC96F: ??? +==43396== by 0xFB836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43396== by 0xFB83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43396== by 0xFB39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43396== by 0xFADE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43396== by 0xBC5F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43396== by 0xBBF8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43396== by 0xA8EFD38: PetscInitialize (pinit.c:924) +==43396== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43396== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43396== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43396== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43396== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43396== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43396== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43396== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) +==43396== +==43396== Open file descriptor 115: +==43396== +==43396== +==43396== Open file descriptor 112: +==43396== +==43396== +==43396== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulusBoundaryCondition_valgrind.txt +==43396== +==43396== +==43396== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43396== +==43396== +==43396== +==43396== HEAP SUMMARY: +==43396== in use at exit: 618,334 bytes in 8,238 blocks +==43396== total heap usage: 48,815 allocs, 40,577 frees, 1,338,522,425 bytes allocated +==43396== +==43396== LEAK SUMMARY: +==43396== definitely lost: 0 bytes in 0 blocks +==43396== indirectly lost: 0 bytes in 0 blocks +==43396== possibly lost: 0 bytes in 0 blocks +==43396== still reachable: 24 bytes in 2 blocks +==43396== suppressed: 618,310 bytes in 8,236 blocks +==43396== Reachable blocks (those to which a pointer was found) are not shown. +==43396== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43396== +==43396== For lists of detected and suppressed errors, rerun with: -s +==43396== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestStimulusFactory_valgrind.txt b/log-files/2024-09-07_08-54-51/TestStimulusFactory_valgrind.txt new file mode 100644 index 000000000..987a53e66 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestStimulusFactory_valgrind.txt @@ -0,0 +1,73 @@ +==41164== Memcheck, a memory error detector +==41164== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41164== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41164== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulusFactory -malloc_debug -malloc_dump -memory_info +==41164== Parent PID: 23903 +==41164== +==41164== +==41164== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41164== Open file descriptor 12: +==41164== at 0xA7C307D: pipe (pipe.c:29) +==41164== by 0x1432407D: ??? +==41164== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41164== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41164== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41164== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==41164== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41164== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41164== by 0x122E20: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41164== by 0x11DDCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41164== by 0x120996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41164== by 0x120836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41164== by 0x120ECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41164== by 0x11C1F5: main (TestStimulusFactory.cpp:19) +==41164== +==41164== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41164== at 0xA7C7A1C: __open_nocancel (open64_nocancel.c:39) +==41164== by 0xA74BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41164== by 0xA0E4822: ??? +==41164== by 0xA0E496F: ??? +==41164== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41164== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41164== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41164== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41164== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41164== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41164== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==41164== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41164== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41164== by 0x122E20: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41164== by 0x11DDCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41164== by 0x120996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41164== by 0x120836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41164== by 0x120ECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41164== by 0x11C1F5: main (TestStimulusFactory.cpp:19) +==41164== +==41164== Open file descriptor 115: +==41164== +==41164== +==41164== Open file descriptor 112: +==41164== +==41164== +==41164== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulusFactory_valgrind.txt +==41164== +==41164== +==41164== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41164== +==41164== +==41164== +==41164== HEAP SUMMARY: +==41164== in use at exit: 618,814 bytes in 8,248 blocks +==41164== total heap usage: 180,619 allocs, 172,371 frees, 1,362,118,007 bytes allocated +==41164== +==41164== LEAK SUMMARY: +==41164== definitely lost: 0 bytes in 0 blocks +==41164== indirectly lost: 0 bytes in 0 blocks +==41164== possibly lost: 0 bytes in 0 blocks +==41164== still reachable: 24 bytes in 2 blocks +==41164== suppressed: 618,790 bytes in 8,246 blocks +==41164== Reachable blocks (those to which a pointer was found) are not shown. +==41164== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41164== +==41164== For lists of detected and suppressed errors, rerun with: -s +==41164== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 44 from 36) diff --git a/log-files/2024-09-07_08-54-51/TestStimulus_valgrind.txt b/log-files/2024-09-07_08-54-51/TestStimulus_valgrind.txt new file mode 100644 index 000000000..a4e67db66 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestStimulus_valgrind.txt @@ -0,0 +1,73 @@ +==43395== Memcheck, a memory error detector +==43395== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43395== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43395== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulus -malloc_debug -malloc_dump -memory_info +==43395== Parent PID: 23903 +==43395== +==43395== +==43395== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43395== Open file descriptor 12: +==43395== at 0x9B4C07D: pipe (pipe.c:29) +==43395== by 0x1432407D: ??? +==43395== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43395== by 0x9698418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43395== by 0x9631D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43395== by 0x8328D38: PetscInitialize (pinit.c:924) +==43395== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43395== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43395== by 0x123427: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43395== by 0x11E823: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43395== by 0x120E66: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43395== by 0x120D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43395== by 0x121375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43395== by 0x11D025: main (TestStimulus.cpp:18) +==43395== +==43395== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43395== at 0x9B50A1C: __open_nocancel (open64_nocancel.c:39) +==43395== by 0x9AD4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43395== by 0x81D2822: ??? +==43395== by 0x81D296F: ??? +==43395== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43395== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43395== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43395== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43395== by 0x9698418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43395== by 0x9631D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43395== by 0x8328D38: PetscInitialize (pinit.c:924) +==43395== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43395== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43395== by 0x123427: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43395== by 0x11E823: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43395== by 0x120E66: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43395== by 0x120D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43395== by 0x121375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43395== by 0x11D025: main (TestStimulus.cpp:18) +==43395== +==43395== Open file descriptor 115: +==43395== +==43395== +==43395== Open file descriptor 112: +==43395== +==43395== +==43395== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulus_valgrind.txt +==43395== +==43395== +==43395== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43395== +==43395== +==43395== +==43395== HEAP SUMMARY: +==43395== in use at exit: 618,334 bytes in 8,238 blocks +==43395== total heap usage: 48,982 allocs, 40,744 frees, 1,338,552,108 bytes allocated +==43395== +==43395== LEAK SUMMARY: +==43395== definitely lost: 0 bytes in 0 blocks +==43395== indirectly lost: 0 bytes in 0 blocks +==43395== possibly lost: 0 bytes in 0 blocks +==43395== still reachable: 24 bytes in 2 blocks +==43395== suppressed: 618,310 bytes in 8,236 blocks +==43395== Reachable blocks (those to which a pointer was found) are not shown. +==43395== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43395== +==43395== For lists of detected and suppressed errors, rerun with: -s +==43395== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestStokesFlowAssembler_valgrind.txt b/log-files/2024-09-07_08-54-51/TestStokesFlowAssembler_valgrind.txt new file mode 100644 index 000000000..8f990e206 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestStokesFlowAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25213== Memcheck, a memory error detector +==25213== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25213== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25213== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestStokesFlowAssembler -malloc_debug -malloc_dump -memory_info +==25213== Parent PID: 23903 +==25213== +==25213== +==25213== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25213== Open file descriptor 12: +==25213== at 0x866707D: pipe (pipe.c:29) +==25213== by 0x106D807D: ??? +==25213== by 0xC4EC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25213== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25213== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25213== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25213== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25213== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25213== by 0x12CFE0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25213== by 0x128839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25213== by 0x12AC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25213== by 0x12AB53: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25213== by 0x12B167: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25213== by 0x126EB5: main (TestStokesFlowAssembler.cpp:18) +==25213== +==25213== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25213== at 0x866BA1C: __open_nocancel (open64_nocancel.c:39) +==25213== by 0x85EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25213== by 0x7EBB822: ??? +==25213== by 0x7EBB96F: ??? +==25213== by 0xC5916DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25213== by 0xC591938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25213== by 0xC547922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25213== by 0xC4EC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25213== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25213== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25213== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25213== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25213== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25213== by 0x12CFE0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25213== by 0x128839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25213== by 0x12AC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25213== by 0x12AB53: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25213== by 0x12B167: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25213== by 0x126EB5: main (TestStokesFlowAssembler.cpp:18) +==25213== +==25213== Open file descriptor 115: +==25213== +==25213== +==25213== Open file descriptor 112: +==25213== +==25213== +==25213== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStokesFlowAssembler_valgrind.txt +==25213== +==25213== +==25213== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25213== +==25213== +==25213== +==25213== HEAP SUMMARY: +==25213== in use at exit: 618,270 bytes in 8,238 blocks +==25213== total heap usage: 48,401 allocs, 40,163 frees, 1,338,713,817 bytes allocated +==25213== +==25213== LEAK SUMMARY: +==25213== definitely lost: 0 bytes in 0 blocks +==25213== indirectly lost: 0 bytes in 0 blocks +==25213== possibly lost: 0 bytes in 0 blocks +==25213== still reachable: 24 bytes in 2 blocks +==25213== suppressed: 618,246 bytes in 8,236 blocks +==25213== Reachable blocks (those to which a pointer was found) are not shown. +==25213== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25213== +==25213== For lists of detected and suppressed errors, rerun with: -s +==25213== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestStokesFlowSolver_valgrind.txt b/log-files/2024-09-07_08-54-51/TestStokesFlowSolver_valgrind.txt new file mode 100644 index 000000000..c8dcd0017 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestStokesFlowSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25221== Memcheck, a memory error detector +==25221== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25221== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25221== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestStokesFlowSolver -malloc_debug -malloc_dump -memory_info +==25221== Parent PID: 23903 +==25221== +==25221== +==25221== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25221== Open file descriptor 12: +==25221== at 0x866707D: pipe (pipe.c:29) +==25221== by 0x106D807D: ??? +==25221== by 0xC4EC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25221== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25221== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25221== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25221== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25221== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25221== by 0x158044: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25221== by 0x1529D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25221== by 0x155C4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25221== by 0x155B49: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25221== by 0x15615D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25221== by 0x1511D5: main (TestStokesFlowSolver.cpp:18) +==25221== +==25221== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25221== at 0x866BA1C: __open_nocancel (open64_nocancel.c:39) +==25221== by 0x85EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25221== by 0x7EBB822: ??? +==25221== by 0x7EBB96F: ??? +==25221== by 0xC5916DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25221== by 0xC591938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25221== by 0xC547922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25221== by 0xC4EC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25221== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25221== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25221== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25221== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25221== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25221== by 0x158044: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25221== by 0x1529D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25221== by 0x155C4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25221== by 0x155B49: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25221== by 0x15615D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25221== by 0x1511D5: main (TestStokesFlowSolver.cpp:18) +==25221== +==25221== Open file descriptor 115: +==25221== +==25221== +==25221== Open file descriptor 112: +==25221== +==25221== +==25221== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStokesFlowSolver_valgrind.txt +==25221== +==25221== +==25221== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25221== +==25221== +==25221== +==25221== HEAP SUMMARY: +==25221== in use at exit: 618,199 bytes in 8,234 blocks +==25221== total heap usage: 557,705 allocs, 549,471 frees, 1,530,978,411 bytes allocated +==25221== +==25221== LEAK SUMMARY: +==25221== definitely lost: 0 bytes in 0 blocks +==25221== indirectly lost: 0 bytes in 0 blocks +==25221== possibly lost: 0 bytes in 0 blocks +==25221== still reachable: 24 bytes in 2 blocks +==25221== suppressed: 618,175 bytes in 8,232 blocks +==25221== Reachable blocks (those to which a pointer was found) are not shown. +==25221== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25221== +==25221== For lists of detected and suppressed errors, rerun with: -s +==25221== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestStreeterFibreGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestStreeterFibreGenerator_valgrind.txt new file mode 100644 index 000000000..87fd20b3c --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestStreeterFibreGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==41205== Memcheck, a memory error detector +==41205== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41205== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41205== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStreeterFibreGenerator -malloc_debug -malloc_dump -memory_info +==41205== Parent PID: 23903 +==41205== +==41205== +==41205== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41205== Open file descriptor 12: +==41205== at 0xB9C307D: pipe (pipe.c:29) +==41205== by 0x1432407D: ??? +==41205== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41205== by 0xB2B1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41205== by 0xB24AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41205== by 0x9F1ED38: PetscInitialize (pinit.c:924) +==41205== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41205== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41205== by 0x11B488: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41205== by 0x11684D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41205== by 0x1192DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41205== by 0x11917C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41205== by 0x119813: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41205== by 0x114C75: main (TestStreeterFibreGenerator.cpp:19) +==41205== +==41205== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41205== at 0xB9C7A1C: __open_nocancel (open64_nocancel.c:39) +==41205== by 0xB94BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41205== by 0xB1AD822: ??? +==41205== by 0xB1AD96F: ??? +==41205== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41205== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41205== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41205== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41205== by 0xB2B1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41205== by 0xB24AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41205== by 0x9F1ED38: PetscInitialize (pinit.c:924) +==41205== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41205== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41205== by 0x11B488: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41205== by 0x11684D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41205== by 0x1192DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41205== by 0x11917C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41205== by 0x119813: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41205== by 0x114C75: main (TestStreeterFibreGenerator.cpp:19) +==41205== +==41205== Open file descriptor 115: +==41205== +==41205== +==41205== Open file descriptor 112: +==41205== +==41205== +==41205== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStreeterFibreGenerator_valgrind.txt +==41205== +==41205== +==41205== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41205== +==41205== +==41205== +==41205== HEAP SUMMARY: +==41205== in use at exit: 618,263 bytes in 8,234 blocks +==41205== total heap usage: 4,490,128 allocs, 4,481,894 frees, 1,575,790,712 bytes allocated +==41205== +==41205== LEAK SUMMARY: +==41205== definitely lost: 0 bytes in 0 blocks +==41205== indirectly lost: 0 bytes in 0 blocks +==41205== possibly lost: 0 bytes in 0 blocks +==41205== still reachable: 24 bytes in 2 blocks +==41205== suppressed: 618,239 bytes in 8,232 blocks +==41205== Reachable blocks (those to which a pointer was found) are not shown. +==41205== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41205== +==41205== For lists of detected and suppressed errors, rerun with: -s +==41205== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestSuperellipseGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestSuperellipseGenerator_valgrind.txt new file mode 100644 index 000000000..3f3cfb853 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestSuperellipseGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24811== Memcheck, a memory error detector +==24811== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24811== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24811== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestSuperellipseGenerator -malloc_debug -malloc_dump -memory_info +==24811== Parent PID: 23903 +==24811== +==24811== +==24811== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24811== Open file descriptor 12: +==24811== at 0x7EAB07D: pipe (pipe.c:29) +==24811== by 0x100C307D: ??? +==24811== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24811== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24811== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24811== by 0x667ED38: PetscInitialize (pinit.c:924) +==24811== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24811== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24811== by 0x1163ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24811== by 0x111E13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24811== by 0x114280: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24811== by 0x11417B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24811== by 0x11478F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24811== by 0x110615: main (TestSuperellipseGenerator.cpp:18) +==24811== +==24811== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24811== at 0x7EAFA1C: __open_nocancel (open64_nocancel.c:39) +==24811== by 0x7E33BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24811== by 0x790D822: ??? +==24811== by 0x790D96F: ??? +==24811== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24811== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24811== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24811== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24811== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24811== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24811== by 0x667ED38: PetscInitialize (pinit.c:924) +==24811== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24811== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24811== by 0x1163ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24811== by 0x111E13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24811== by 0x114280: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24811== by 0x11417B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24811== by 0x11478F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24811== by 0x110615: main (TestSuperellipseGenerator.cpp:18) +==24811== +==24811== Open file descriptor 115: +==24811== +==24811== +==24811== Open file descriptor 112: +==24811== +==24811== +==24811== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSuperellipseGenerator_valgrind.txt +==24811== +==24811== +==24811== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24811== +==24811== +==24811== +==24811== HEAP SUMMARY: +==24811== in use at exit: 618,222 bytes in 8,238 blocks +==24811== total heap usage: 47,339 allocs, 39,101 frees, 1,362,406,885 bytes allocated +==24811== +==24811== LEAK SUMMARY: +==24811== definitely lost: 0 bytes in 0 blocks +==24811== indirectly lost: 0 bytes in 0 blocks +==24811== possibly lost: 0 bytes in 0 blocks +==24811== still reachable: 24 bytes in 2 blocks +==24811== suppressed: 618,198 bytes in 8,236 blocks +==24811== Reachable blocks (those to which a pointer was found) are not shown. +==24811== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24811== +==24811== For lists of detected and suppressed errors, rerun with: -s +==24811== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestT2SwapCellKiller_valgrind.txt b/log-files/2024-09-07_08-54-51/TestT2SwapCellKiller_valgrind.txt new file mode 100644 index 000000000..039a58ce2 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestT2SwapCellKiller_valgrind.txt @@ -0,0 +1,73 @@ +==26040== Memcheck, a memory error detector +==26040== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26040== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26040== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestT2SwapCellKiller -malloc_debug -malloc_dump -memory_info +==26040== Parent PID: 23903 +==26040== +==26040== +==26040== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26040== Open file descriptor 12: +==26040== at 0x10CF207D: pipe (pipe.c:29) +==26040== by 0x196AD07D: ??? +==26040== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26040== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26040== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26040== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26040== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26040== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26040== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26040== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26040== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26040== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26040== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26040== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) +==26040== +==26040== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26040== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26040== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26040== by 0xF136822: ??? +==26040== by 0xF13696F: ??? +==26040== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26040== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26040== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26040== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26040== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26040== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26040== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26040== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26040== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26040== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26040== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26040== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26040== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26040== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26040== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) +==26040== +==26040== Open file descriptor 115: +==26040== +==26040== +==26040== Open file descriptor 112: +==26040== +==26040== +==26040== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestT2SwapCellKiller_valgrind.txt +==26040== +==26040== +==26040== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26040== +==26040== +==26040== +==26040== HEAP SUMMARY: +==26040== in use at exit: 618,350 bytes in 8,239 blocks +==26040== total heap usage: 77,900 allocs, 69,661 frees, 1,343,659,955 bytes allocated +==26040== +==26040== LEAK SUMMARY: +==26040== definitely lost: 0 bytes in 0 blocks +==26040== indirectly lost: 0 bytes in 0 blocks +==26040== possibly lost: 0 bytes in 0 blocks +==26040== still reachable: 56 bytes in 3 blocks +==26040== suppressed: 618,294 bytes in 8,236 blocks +==26040== Reachable blocks (those to which a pointer was found) are not shown. +==26040== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26040== +==26040== For lists of detected and suppressed errors, rerun with: -s +==26040== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestTargetAreaLinearGrowthModifier_valgrind.txt b/log-files/2024-09-07_08-54-51/TestTargetAreaLinearGrowthModifier_valgrind.txt new file mode 100644 index 000000000..7dda53f41 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestTargetAreaLinearGrowthModifier_valgrind.txt @@ -0,0 +1,73 @@ +==39450== Memcheck, a memory error detector +==39450== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39450== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39450== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTargetAreaLinearGrowthModifier -malloc_debug -malloc_dump -memory_info +==39450== Parent PID: 23903 +==39450== +==39450== +==39450== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39450== Open file descriptor 12: +==39450== at 0x10CF207D: pipe (pipe.c:29) +==39450== by 0x196AD07D: ??? +==39450== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39450== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39450== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39450== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39450== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39450== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39450== by 0x139DC3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39450== by 0x13253D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39450== by 0x13583C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39450== by 0x1356DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39450== by 0x135D73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39450== by 0x130965: main (TestTargetAreaLinearGrowthModifier.cpp:19) +==39450== +==39450== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39450== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==39450== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39450== by 0xF136822: ??? +==39450== by 0xF13696F: ??? +==39450== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39450== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39450== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39450== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39450== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39450== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39450== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39450== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39450== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39450== by 0x139DC3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39450== by 0x13253D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39450== by 0x13583C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39450== by 0x1356DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39450== by 0x135D73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39450== by 0x130965: main (TestTargetAreaLinearGrowthModifier.cpp:19) +==39450== +==39450== Open file descriptor 115: +==39450== +==39450== +==39450== Open file descriptor 112: +==39450== +==39450== +==39450== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTargetAreaLinearGrowthModifier_valgrind.txt +==39450== +==39450== +==39450== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39450== +==39450== +==39450== +==39450== HEAP SUMMARY: +==39450== in use at exit: 618,350 bytes in 8,239 blocks +==39450== total heap usage: 584,182 allocs, 575,943 frees, 1,436,129,439 bytes allocated +==39450== +==39450== LEAK SUMMARY: +==39450== definitely lost: 0 bytes in 0 blocks +==39450== indirectly lost: 0 bytes in 0 blocks +==39450== possibly lost: 0 bytes in 0 blocks +==39450== still reachable: 56 bytes in 3 blocks +==39450== suppressed: 618,294 bytes in 8,236 blocks +==39450== Reachable blocks (those to which a pointer was found) are not shown. +==39450== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39450== +==39450== For lists of detected and suppressed errors, rerun with: -s +==39450== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestTetrahedralMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestTetrahedralMesh_valgrind.txt new file mode 100644 index 000000000..5af898b6b --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24390== Memcheck, a memory error detector +==24390== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24390== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24390== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==24390== Parent PID: 23903 +==24390== +==24390== +==24390== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24390== Open file descriptor 12: +==24390== at 0x823407D: pipe (pipe.c:29) +==24390== by 0x100C507D: ??? +==24390== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24390== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24390== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24390== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24390== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24390== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24390== by 0x1518AA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24390== by 0x14BB9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24390== by 0x14F310: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24390== by 0x14F1B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24390== by 0x14F847: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24390== by 0x149FC5: main (TestTetrahedralMesh.cpp:19) +==24390== +==24390== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24390== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24390== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24390== by 0x658F822: ??? +==24390== by 0x658F96F: ??? +==24390== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24390== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24390== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24390== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24390== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24390== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24390== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24390== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24390== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24390== by 0x1518AA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24390== by 0x14BB9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24390== by 0x14F310: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24390== by 0x14F1B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24390== by 0x14F847: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24390== by 0x149FC5: main (TestTetrahedralMesh.cpp:19) +==24390== +==24390== Open file descriptor 115: +==24390== +==24390== +==24390== Open file descriptor 112: +==24390== +==24390== +==24390== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTetrahedralMesh_valgrind.txt +==24390== +==24390== +==24390== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24390== +==24390== +==24390== +==24390== HEAP SUMMARY: +==24390== in use at exit: 620,774 bytes in 8,239 blocks +==24390== total heap usage: 1,274,550 allocs, 1,266,311 frees, 1,408,864,770 bytes allocated +==24390== +==24390== LEAK SUMMARY: +==24390== definitely lost: 0 bytes in 0 blocks +==24390== indirectly lost: 0 bytes in 0 blocks +==24390== possibly lost: 0 bytes in 0 blocks +==24390== still reachable: 2,576 bytes in 3 blocks +==24390== suppressed: 618,198 bytes in 8,236 blocks +==24390== Reachable blocks (those to which a pointer was found) are not shown. +==24390== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24390== +==24390== For lists of detected and suppressed errors, rerun with: -s +==24390== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestTimeAdaptivityController_valgrind.txt b/log-files/2024-09-07_08-54-51/TestTimeAdaptivityController_valgrind.txt new file mode 100644 index 000000000..7d6074638 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestTimeAdaptivityController_valgrind.txt @@ -0,0 +1,73 @@ +==25138== Memcheck, a memory error detector +==25138== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25138== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25138== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestTimeAdaptivityController -malloc_debug -malloc_dump -memory_info +==25138== Parent PID: 23903 +==25138== +==25138== +==25138== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25138== Open file descriptor 12: +==25138== at 0x4CB407D: pipe (pipe.c:29) +==25138== by 0xAEA507D: ??? +==25138== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25138== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25138== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25138== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==25138== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25138== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25138== by 0x111F68: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25138== by 0x10DB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25138== by 0x10FE62: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25138== by 0x10FD5D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25138== by 0x110371: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25138== by 0x10C375: main (TestTimeAdaptivityController.cpp:18) +==25138== +==25138== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25138== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==25138== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25138== by 0x4934822: ??? +==25138== by 0x493496F: ??? +==25138== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25138== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25138== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25138== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25138== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25138== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25138== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==25138== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25138== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25138== by 0x111F68: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25138== by 0x10DB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25138== by 0x10FE62: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25138== by 0x10FD5D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25138== by 0x110371: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25138== by 0x10C375: main (TestTimeAdaptivityController.cpp:18) +==25138== +==25138== Open file descriptor 115: +==25138== +==25138== +==25138== Open file descriptor 112: +==25138== +==25138== +==25138== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimeAdaptivityController_valgrind.txt +==25138== +==25138== +==25138== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25138== +==25138== +==25138== +==25138== HEAP SUMMARY: +==25138== in use at exit: 617,838 bytes in 8,238 blocks +==25138== total heap usage: 44,911 allocs, 36,673 frees, 1,338,159,704 bytes allocated +==25138== +==25138== LEAK SUMMARY: +==25138== definitely lost: 0 bytes in 0 blocks +==25138== indirectly lost: 0 bytes in 0 blocks +==25138== possibly lost: 0 bytes in 0 blocks +==25138== still reachable: 24 bytes in 2 blocks +==25138== suppressed: 617,814 bytes in 8,236 blocks +==25138== Reachable blocks (those to which a pointer was found) are not shown. +==25138== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25138== +==25138== For lists of detected and suppressed errors, rerun with: -s +==25138== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestTimeStepper_valgrind.txt b/log-files/2024-09-07_08-54-51/TestTimeStepper_valgrind.txt new file mode 100644 index 000000000..0b5de2559 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestTimeStepper_valgrind.txt @@ -0,0 +1,73 @@ +==24132== Memcheck, a memory error detector +==24132== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24132== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24132== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestTimeStepper -malloc_debug -malloc_dump -memory_info +==24132== Parent PID: 23903 +==24132== +==24132== +==24132== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24132== Open file descriptor 12: +==24132== at 0x629207D: pipe (pipe.c:29) +==24132== by 0xAEA307D: ??? +==24132== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24132== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24132== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24132== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24132== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24132== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24132== by 0x123201: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24132== by 0x11DDE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24132== by 0x120BB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24132== by 0x120A58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24132== by 0x1210EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24132== by 0x11C205: main (TestTimeStepper.cpp:19) +==24132== +==24132== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24132== at 0x6296A1C: __open_nocancel (open64_nocancel.c:39) +==24132== by 0x621ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24132== by 0x4934822: ??? +==24132== by 0x493496F: ??? +==24132== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24132== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24132== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24132== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24132== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24132== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24132== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24132== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24132== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24132== by 0x123201: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24132== by 0x11DDE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24132== by 0x120BB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24132== by 0x120A58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24132== by 0x1210EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24132== by 0x11C205: main (TestTimeStepper.cpp:19) +==24132== +==24132== Open file descriptor 115: +==24132== +==24132== +==24132== Open file descriptor 112: +==24132== +==24132== +==24132== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimeStepper_valgrind.txt +==24132== +==24132== +==24132== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24132== +==24132== +==24132== +==24132== HEAP SUMMARY: +==24132== in use at exit: 617,838 bytes in 8,238 blocks +==24132== total heap usage: 45,119 allocs, 36,881 frees, 1,338,210,826 bytes allocated +==24132== +==24132== LEAK SUMMARY: +==24132== definitely lost: 0 bytes in 0 blocks +==24132== indirectly lost: 0 bytes in 0 blocks +==24132== possibly lost: 0 bytes in 0 blocks +==24132== still reachable: 24 bytes in 2 blocks +==24132== suppressed: 617,814 bytes in 8,236 blocks +==24132== Reachable blocks (those to which a pointer was found) are not shown. +==24132== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24132== +==24132== For lists of detected and suppressed errors, rerun with: -s +==24132== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestTimer_valgrind.txt b/log-files/2024-09-07_08-54-51/TestTimer_valgrind.txt new file mode 100644 index 000000000..90d445d62 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestTimer_valgrind.txt @@ -0,0 +1,73 @@ +==24131== Memcheck, a memory error detector +==24131== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24131== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24131== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestTimer -malloc_debug -malloc_dump -memory_info +==24131== Parent PID: 23903 +==24131== +==24131== +==24131== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24131== Open file descriptor 12: +==24131== at 0x4D9B07D: pipe (pipe.c:29) +==24131== by 0xAEA507D: ??? +==24131== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24131== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24131== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24131== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24131== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24131== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24131== by 0x112190: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24131== by 0x10DE53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24131== by 0x11025A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24131== by 0x110155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24131== by 0x110769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24131== by 0x10C655: main (TestTimer.cpp:18) +==24131== +==24131== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24131== at 0x4D9FA1C: __open_nocancel (open64_nocancel.c:39) +==24131== by 0x4D23BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24131== by 0x4934822: ??? +==24131== by 0x493496F: ??? +==24131== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24131== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24131== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24131== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24131== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24131== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24131== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24131== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24131== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24131== by 0x112190: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24131== by 0x10DE53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24131== by 0x11025A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24131== by 0x110155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24131== by 0x110769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24131== by 0x10C655: main (TestTimer.cpp:18) +==24131== +==24131== Open file descriptor 115: +==24131== +==24131== +==24131== Open file descriptor 112: +==24131== +==24131== +==24131== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimer_valgrind.txt +==24131== +==24131== +==24131== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24131== +==24131== +==24131== +==24131== HEAP SUMMARY: +==24131== in use at exit: 617,838 bytes in 8,238 blocks +==24131== total heap usage: 44,912 allocs, 36,674 frees, 1,338,159,086 bytes allocated +==24131== +==24131== LEAK SUMMARY: +==24131== definitely lost: 0 bytes in 0 blocks +==24131== indirectly lost: 0 bytes in 0 blocks +==24131== possibly lost: 0 bytes in 0 blocks +==24131== still reachable: 24 bytes in 2 blocks +==24131== suppressed: 617,814 bytes in 8,236 blocks +==24131== Reachable blocks (those to which a pointer was found) are not shown. +==24131== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24131== +==24131== For lists of detected and suppressed errors, rerun with: -s +==24131== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestToroidal2dMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestToroidal2dMesh_valgrind.txt new file mode 100644 index 000000000..5db64c177 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestToroidal2dMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24504== Memcheck, a memory error detector +==24504== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24504== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24504== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidal2dMesh -malloc_debug -malloc_dump -memory_info +==24504== Parent PID: 23903 +==24504== +==24504== +==24504== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24504== Open file descriptor 12: +==24504== at 0x823407D: pipe (pipe.c:29) +==24504== by 0x100C507D: ??? +==24504== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24504== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24504== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24504== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24504== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24504== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24504== by 0x125B47: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24504== by 0x120A23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24504== by 0x123378: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24504== by 0x123274: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24504== by 0x123887: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24504== by 0x11F225: main (TestToroidal2dMesh.cpp:18) +==24504== +==24504== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24504== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24504== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24504== by 0x658F822: ??? +==24504== by 0x658F96F: ??? +==24504== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24504== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24504== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24504== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24504== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24504== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24504== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24504== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24504== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24504== by 0x125B47: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24504== by 0x120A23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24504== by 0x123378: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24504== by 0x123274: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24504== by 0x123887: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24504== by 0x11F225: main (TestToroidal2dMesh.cpp:18) +==24504== +==24504== Open file descriptor 115: +==24504== +==24504== +==24504== Open file descriptor 112: +==24504== +==24504== +==24504== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidal2dMesh_valgrind.txt +==24504== +==24504== +==24504== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24504== +==24504== +==24504== +==24504== HEAP SUMMARY: +==24504== in use at exit: 618,222 bytes in 8,238 blocks +==24504== total heap usage: 164,984 allocs, 156,746 frees, 1,352,671,213 bytes allocated +==24504== +==24504== LEAK SUMMARY: +==24504== definitely lost: 0 bytes in 0 blocks +==24504== indirectly lost: 0 bytes in 0 blocks +==24504== possibly lost: 0 bytes in 0 blocks +==24504== still reachable: 24 bytes in 2 blocks +==24504== suppressed: 618,198 bytes in 8,236 blocks +==24504== Reachable blocks (those to which a pointer was found) are not shown. +==24504== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24504== +==24504== For lists of detected and suppressed errors, rerun with: -s +==24504== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestToroidal2dVertexMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestToroidal2dVertexMesh_valgrind.txt new file mode 100644 index 000000000..c24906d75 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestToroidal2dVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24658== Memcheck, a memory error detector +==24658== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24658== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24658== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidal2dVertexMesh -malloc_debug -malloc_dump -memory_info +==24658== Parent PID: 23903 +==24658== +==24658== +==24658== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24658== Open file descriptor 12: +==24658== at 0x823407D: pipe (pipe.c:29) +==24658== by 0x100C507D: ??? +==24658== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24658== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24658== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24658== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24658== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24658== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24658== by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24658== by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24658== by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24658== by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24658== by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24658== by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19) +==24658== +==24658== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24658== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24658== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24658== by 0x658F822: ??? +==24658== by 0x658F96F: ??? +==24658== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24658== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24658== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24658== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24658== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24658== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24658== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24658== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24658== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24658== by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24658== by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24658== by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24658== by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24658== by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24658== by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19) +==24658== +==24658== Open file descriptor 115: +==24658== +==24658== +==24658== Open file descriptor 112: +==24658== +==24658== +==24658== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidal2dVertexMesh_valgrind.txt +==24658== +==24658== +==24658== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24658== +==24658== +==24658== +==24658== HEAP SUMMARY: +==24658== in use at exit: 618,222 bytes in 8,238 blocks +==24658== total heap usage: 144,584 allocs, 136,346 frees, 1,346,867,217 bytes allocated +==24658== +==24658== LEAK SUMMARY: +==24658== definitely lost: 0 bytes in 0 blocks +==24658== indirectly lost: 0 bytes in 0 blocks +==24658== possibly lost: 0 bytes in 0 blocks +==24658== still reachable: 24 bytes in 2 blocks +==24658== suppressed: 618,198 bytes in 8,236 blocks +==24658== Reachable blocks (those to which a pointer was found) are not shown. +==24658== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24658== +==24658== For lists of detected and suppressed errors, rerun with: -s +==24658== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestToroidalHoneycombMeshGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestToroidalHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..fca322d11 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestToroidalHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24514== Memcheck, a memory error detector +==24514== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24514== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24514== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidalHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24514== Parent PID: 23903 +==24514== +==24514== +==24514== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24514== Open file descriptor 12: +==24514== at 0x810907D: pipe (pipe.c:29) +==24514== by 0x100C307D: ??? +==24514== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24514== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24514== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24514== by 0x667ED38: PetscInitialize (pinit.c:924) +==24514== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24514== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24514== by 0x11717D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24514== by 0x1125CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24514== by 0x114F48: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24514== by 0x114DE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24514== by 0x11547F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24514== by 0x1109F5: main (TestToroidalHoneycombMeshGenerator.cpp:19) +==24514== +==24514== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24514== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24514== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24514== by 0x790D822: ??? +==24514== by 0x790D96F: ??? +==24514== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24514== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24514== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24514== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24514== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24514== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24514== by 0x667ED38: PetscInitialize (pinit.c:924) +==24514== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24514== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24514== by 0x11717D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24514== by 0x1125CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24514== by 0x114F48: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24514== by 0x114DE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24514== by 0x11547F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24514== by 0x1109F5: main (TestToroidalHoneycombMeshGenerator.cpp:19) +==24514== +==24514== Open file descriptor 115: +==24514== +==24514== +==24514== Open file descriptor 112: +==24514== +==24514== +==24514== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidalHoneycombMeshGenerator_valgrind.txt +==24514== +==24514== +==24514== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24514== +==24514== +==24514== +==24514== HEAP SUMMARY: +==24514== in use at exit: 618,222 bytes in 8,238 blocks +==24514== total heap usage: 105,618 allocs, 97,380 frees, 1,342,904,904 bytes allocated +==24514== +==24514== LEAK SUMMARY: +==24514== definitely lost: 0 bytes in 0 blocks +==24514== indirectly lost: 0 bytes in 0 blocks +==24514== possibly lost: 0 bytes in 0 blocks +==24514== still reachable: 24 bytes in 2 blocks +==24514== suppressed: 618,198 bytes in 8,236 blocks +==24514== Reachable blocks (those to which a pointer was found) are not shown. +==24514== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24514== +==24514== For lists of detected and suppressed errors, rerun with: -s +==24514== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..c954b53a7 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24659== Memcheck, a memory error detector +==24659== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24659== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24659== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidalHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24659== Parent PID: 23903 +==24659== +==24659== +==24659== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24659== Open file descriptor 12: +==24659== at 0x810907D: pipe (pipe.c:29) +==24659== by 0x100C307D: ??? +==24659== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24659== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24659== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24659== by 0x667ED38: PetscInitialize (pinit.c:924) +==24659== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24659== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24659== by 0x11A0CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24659== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24659== by 0x116246: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24659== by 0x1160E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24659== by 0x11677D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24659== by 0x111D75: main (TestToroidalHoneycombVertexMeshGenerator.cpp:19) +==24659== +==24659== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24659== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24659== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24659== by 0x790D822: ??? +==24659== by 0x790D96F: ??? +==24659== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24659== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24659== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24659== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24659== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24659== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24659== by 0x667ED38: PetscInitialize (pinit.c:924) +==24659== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24659== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24659== by 0x11A0CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24659== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24659== by 0x116246: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24659== by 0x1160E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24659== by 0x11677D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24659== by 0x111D75: main (TestToroidalHoneycombVertexMeshGenerator.cpp:19) +==24659== +==24659== Open file descriptor 115: +==24659== +==24659== +==24659== Open file descriptor 112: +==24659== +==24659== +==24659== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt +==24659== +==24659== +==24659== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24659== +==24659== +==24659== +==24659== HEAP SUMMARY: +==24659== in use at exit: 618,222 bytes in 8,238 blocks +==24659== total heap usage: 48,583 allocs, 40,345 frees, 1,338,603,729 bytes allocated +==24659== +==24659== LEAK SUMMARY: +==24659== definitely lost: 0 bytes in 0 blocks +==24659== indirectly lost: 0 bytes in 0 blocks +==24659== possibly lost: 0 bytes in 0 blocks +==24659== still reachable: 24 bytes in 2 blocks +==24659== suppressed: 618,198 bytes in 8,236 blocks +==24659== Reachable blocks (those to which a pointer was found) are not shown. +==24659== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24659== +==24659== For lists of detected and suppressed errors, rerun with: -s +==24659== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestTransformations_valgrind.txt b/log-files/2024-09-07_08-54-51/TestTransformations_valgrind.txt new file mode 100644 index 000000000..fd6fb8d25 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestTransformations_valgrind.txt @@ -0,0 +1,73 @@ +==24397== Memcheck, a memory error detector +==24397== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24397== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24397== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTransformations -malloc_debug -malloc_dump -memory_info +==24397== Parent PID: 23903 +==24397== +==24397== +==24397== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24397== Open file descriptor 12: +==24397== at 0x6D3B07D: pipe (pipe.c:29) +==24397== by 0x100C507D: ??? +==24397== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24397== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24397== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24397== by 0x7017D38: PetscInitialize (pinit.c:924) +==24397== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24397== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24397== by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24397== by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24397== by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24397== by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24397== by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24397== by 0x11FEB5: main (TestTransformations.cpp:19) +==24397== +==24397== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24397== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24397== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24397== by 0x658F822: ??? +==24397== by 0x658F96F: ??? +==24397== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24397== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24397== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24397== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24397== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24397== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24397== by 0x7017D38: PetscInitialize (pinit.c:924) +==24397== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24397== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24397== by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24397== by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24397== by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24397== by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24397== by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24397== by 0x11FEB5: main (TestTransformations.cpp:19) +==24397== +==24397== Open file descriptor 115: +==24397== +==24397== +==24397== Open file descriptor 112: +==24397== +==24397== +==24397== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTransformations_valgrind.txt +==24397== +==24397== +==24397== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24397== +==24397== +==24397== +==24397== HEAP SUMMARY: +==24397== in use at exit: 618,222 bytes in 8,238 blocks +==24397== total heap usage: 113,753 allocs, 105,515 frees, 1,343,577,392 bytes allocated +==24397== +==24397== LEAK SUMMARY: +==24397== definitely lost: 0 bytes in 0 blocks +==24397== indirectly lost: 0 bytes in 0 blocks +==24397== possibly lost: 0 bytes in 0 blocks +==24397== still reachable: 24 bytes in 2 blocks +==24397== suppressed: 618,198 bytes in 8,236 blocks +==24397== Reachable blocks (those to which a pointer was found) are not shown. +==24397== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24397== +==24397== For lists of detected and suppressed errors, rerun with: -s +==24397== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestTrianglesMeshReader_valgrind.txt b/log-files/2024-09-07_08-54-51/TestTrianglesMeshReader_valgrind.txt new file mode 100644 index 000000000..37d58514a --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestTrianglesMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24545== Memcheck, a memory error detector +==24545== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24545== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24545== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTrianglesMeshReader -malloc_debug -malloc_dump -memory_info +==24545== Parent PID: 23903 +==24545== +==24545== +==24545== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24545== Open file descriptor 12: +==24545== at 0x810907D: pipe (pipe.c:29) +==24545== by 0x100C307D: ??? +==24545== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24545== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24545== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24545== by 0x667ED38: PetscInitialize (pinit.c:924) +==24545== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24545== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24545== by 0x124FBD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24545== by 0x11FF0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24545== by 0x122F54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24545== by 0x122DF4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24545== by 0x12348B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24545== by 0x11E335: main (TestTrianglesMeshReader.cpp:19) +==24545== +==24545== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24545== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24545== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24545== by 0x790D822: ??? +==24545== by 0x790D96F: ??? +==24545== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24545== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24545== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24545== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24545== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24545== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24545== by 0x667ED38: PetscInitialize (pinit.c:924) +==24545== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24545== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24545== by 0x124FBD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24545== by 0x11FF0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24545== by 0x122F54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24545== by 0x122DF4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24545== by 0x12348B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24545== by 0x11E335: main (TestTrianglesMeshReader.cpp:19) +==24545== +==24545== Open file descriptor 115: +==24545== +==24545== +==24545== Open file descriptor 112: +==24545== +==24545== +==24545== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTrianglesMeshReader_valgrind.txt +==24545== +==24545== +==24545== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24545== +==24545== +==24545== +==24545== HEAP SUMMARY: +==24545== in use at exit: 618,222 bytes in 8,238 blocks +==24545== total heap usage: 149,659 allocs, 141,421 frees, 1,349,785,358 bytes allocated +==24545== +==24545== LEAK SUMMARY: +==24545== definitely lost: 0 bytes in 0 blocks +==24545== indirectly lost: 0 bytes in 0 blocks +==24545== possibly lost: 0 bytes in 0 blocks +==24545== still reachable: 24 bytes in 2 blocks +==24545== suppressed: 618,198 bytes in 8,236 blocks +==24545== Reachable blocks (those to which a pointer was found) are not shown. +==24545== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24545== +==24545== For lists of detected and suppressed errors, rerun with: -s +==24545== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestTysonNovak2001OdeSystem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestTysonNovak2001OdeSystem_valgrind.txt new file mode 100644 index 000000000..80c03e479 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestTysonNovak2001OdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25780== Memcheck, a memory error detector +==25780== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25780== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25780== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info +==25780== Parent PID: 23903 +==25780== +==25780== +==25780== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25780== Open file descriptor 12: +==25780== at 0xDB5007D: pipe (pipe.c:29) +==25780== by 0x196AC07D: ??? +==25780== by 0x14C654CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25780== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25780== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25780== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25780== by 0xD7561D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25780== by 0xD756227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25780== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25780== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25780== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25780== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25780== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25780== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) +==25780== +==25780== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25780== at 0xDB54A1C: __open_nocancel (open64_nocancel.c:39) +==25780== by 0xDAD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25780== by 0xD790822: ??? +==25780== by 0xD79096F: ??? +==25780== by 0x14D0A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25780== by 0x14D0A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25780== by 0x14CC0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25780== by 0x14C652DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25780== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25780== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25780== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25780== by 0xD7561D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25780== by 0xD756227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25780== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25780== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25780== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25780== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25780== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25780== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) +==25780== +==25780== Open file descriptor 115: +==25780== +==25780== +==25780== Open file descriptor 112: +==25780== +==25780== +==25780== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt +==25780== +==25780== +==25780== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25780== +==25780== +==25780== +==25780== HEAP SUMMARY: +==25780== in use at exit: 618,318 bytes in 8,238 blocks +==25780== total heap usage: 58,421 allocs, 50,183 frees, 1,339,316,719 bytes allocated +==25780== +==25780== LEAK SUMMARY: +==25780== definitely lost: 0 bytes in 0 blocks +==25780== indirectly lost: 0 bytes in 0 blocks +==25780== possibly lost: 0 bytes in 0 blocks +==25780== still reachable: 24 bytes in 2 blocks +==25780== suppressed: 618,294 bytes in 8,236 blocks +==25780== Reachable blocks (those to which a pointer was found) are not shown. +==25780== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25780== +==25780== For lists of detected and suppressed errors, rerun with: -s +==25780== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestUblasCustomFunctions_valgrind.txt b/log-files/2024-09-07_08-54-51/TestUblasCustomFunctions_valgrind.txt new file mode 100644 index 000000000..5328a31c6 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestUblasCustomFunctions_valgrind.txt @@ -0,0 +1,73 @@ +==24266== Memcheck, a memory error detector +==24266== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24266== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24266== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestUblasCustomFunctions -malloc_debug -malloc_dump -memory_info +==24266== Parent PID: 23903 +==24266== +==24266== +==24266== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24266== Open file descriptor 12: +==24266== at 0x4E2A07D: pipe (pipe.c:29) +==24266== by 0xAF3907D: ??? +==24266== by 0x8A4D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24266== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24266== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24266== by 0x5075D38: PetscInitialize (pinit.c:924) +==24266== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24266== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24266== by 0x11B27E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24266== by 0x1164ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24266== by 0x118F42: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24266== by 0x118DE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24266== by 0x119479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24266== by 0x114915: main (TestUblasCustomFunctions.cpp:19) +==24266== +==24266== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24266== at 0x4E2EA1C: __open_nocancel (open64_nocancel.c:39) +==24266== by 0x4DB2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24266== by 0x49C3822: ??? +==24266== by 0x49C396F: ??? +==24266== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24266== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24266== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24266== by 0x8A4D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24266== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24266== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24266== by 0x5075D38: PetscInitialize (pinit.c:924) +==24266== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24266== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24266== by 0x11B27E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24266== by 0x1164ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24266== by 0x118F42: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24266== by 0x118DE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24266== by 0x119479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24266== by 0x114915: main (TestUblasCustomFunctions.cpp:19) +==24266== +==24266== Open file descriptor 115: +==24266== +==24266== +==24266== Open file descriptor 112: +==24266== +==24266== +==24266== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestUblasCustomFunctions_valgrind.txt +==24266== +==24266== +==24266== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24266== +==24266== +==24266== +==24266== HEAP SUMMARY: +==24266== in use at exit: 617,854 bytes in 8,238 blocks +==24266== total heap usage: 44,928 allocs, 36,690 frees, 1,338,161,756 bytes allocated +==24266== +==24266== LEAK SUMMARY: +==24266== definitely lost: 0 bytes in 0 blocks +==24266== indirectly lost: 0 bytes in 0 blocks +==24266== possibly lost: 0 bytes in 0 blocks +==24266== still reachable: 24 bytes in 2 blocks +==24266== suppressed: 617,830 bytes in 8,236 blocks +==24266== Reachable blocks (those to which a pointer was found) are not shown. +==24266== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24266== +==24266== For lists of detected and suppressed errors, rerun with: -s +==24266== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestUniformGridRandomFieldGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestUniformGridRandomFieldGenerator_valgrind.txt new file mode 100644 index 000000000..6f3ddf1db --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestUniformGridRandomFieldGenerator_valgrind.txt @@ -0,0 +1,36 @@ +==24806== Memcheck, a memory error detector +==24806== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24806== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24806== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestUniformGridRandomFieldGenerator -malloc_debug -malloc_dump -memory_info +==24806== Parent PID: 23903 +==24806== +==24806== +==24806== FILE DESCRIPTORS: 7 open (3 std) at exit. +==24806== Open file descriptor 115: +==24806== +==24806== +==24806== Open file descriptor 112: +==24806== +==24806== +==24806== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestUniformGridRandomFieldGenerator_valgrind.txt +==24806== +==24806== +==24806== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24806== +==24806== +==24806== +==24806== HEAP SUMMARY: +==24806== in use at exit: 2,576 bytes in 3 blocks +==24806== total heap usage: 5,572 allocs, 5,569 frees, 617,066 bytes allocated +==24806== +==24806== LEAK SUMMARY: +==24806== definitely lost: 0 bytes in 0 blocks +==24806== indirectly lost: 0 bytes in 0 blocks +==24806== possibly lost: 0 bytes in 0 blocks +==24806== still reachable: 2,576 bytes in 3 blocks +==24806== suppressed: 0 bytes in 0 blocks +==24806== Reachable blocks (those to which a pointer was found) are not shown. +==24806== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24806== +==24806== For lists of detected and suppressed errors, rerun with: -s +==24806== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-07_08-54-51/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt new file mode 100644 index 000000000..de3049a9e --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==40225== Memcheck, a memory error detector +==40225== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40225== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40225== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVanLeeuwen2009WntSwatCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==40225== Parent PID: 23903 +==40225== +==40225== +==40225== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40225== Open file descriptor 12: +==40225== at 0x127F407D: pipe (pipe.c:29) +==40225== by 0x1B36D07D: ??? +==40225== by 0x165254CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40225== by 0x120FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40225== by 0x12095D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40225== by 0x10D8CD38: PetscInitialize (pinit.c:924) +==40225== by 0x10BFE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40225== by 0x10BFE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40225== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40225== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40225== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40225== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40225== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40225== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) +==40225== +==40225== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40225== at 0x127F8A1C: __open_nocancel (open64_nocancel.c:39) +==40225== by 0x1277CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40225== by 0x10C38822: ??? +==40225== by 0x10C3896F: ??? +==40225== by 0x165CA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40225== by 0x165CA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40225== by 0x16580922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40225== by 0x165252DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40225== by 0x120FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40225== by 0x12095D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40225== by 0x10D8CD38: PetscInitialize (pinit.c:924) +==40225== by 0x10BFE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40225== by 0x10BFE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40225== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40225== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40225== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40225== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40225== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40225== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) +==40225== +==40225== Open file descriptor 115: +==40225== +==40225== +==40225== Open file descriptor 112: +==40225== +==40225== +==40225== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt +==40225== +==40225== +==40225== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40225== +==40225== +==40225== +==40225== HEAP SUMMARY: +==40225== in use at exit: 618,334 bytes in 8,238 blocks +==40225== total heap usage: 519,310 allocs, 511,072 frees, 1,547,101,565 bytes allocated +==40225== +==40225== LEAK SUMMARY: +==40225== definitely lost: 0 bytes in 0 blocks +==40225== indirectly lost: 0 bytes in 0 blocks +==40225== possibly lost: 0 bytes in 0 blocks +==40225== still reachable: 24 bytes in 2 blocks +==40225== suppressed: 618,310 bytes in 8,236 blocks +==40225== Reachable blocks (those to which a pointer was found) are not shown. +==40225== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40225== +==40225== For lists of detected and suppressed errors, rerun with: -s +==40225== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestVentilationProblem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestVentilationProblem_valgrind.txt new file mode 100644 index 000000000..b1ba667c2 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestVentilationProblem_valgrind.txt @@ -0,0 +1,73 @@ +==40972== Memcheck, a memory error detector +==40972== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40972== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40972== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestVentilationProblem -malloc_debug -malloc_dump -memory_info +==40972== Parent PID: 23903 +==40972== +==40972== +==40972== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40972== Open file descriptor 12: +==40972== at 0x6E5907D: pipe (pipe.c:29) +==40972== by 0x107A407D: ??? +==40972== by 0xC01A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40972== by 0x83D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40972== by 0x836DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40972== by 0x7064D38: PetscInitialize (pinit.c:924) +==40972== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40972== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40972== by 0x11769E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40972== by 0x1128D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40972== by 0x115638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40972== by 0x1154D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40972== by 0x115B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40972== by 0x110B55: main (TestVentilationProblem.cpp:19) +==40972== +==40972== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40972== at 0x6E5DA1C: __open_nocancel (open64_nocancel.c:39) +==40972== by 0x6DE1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40972== by 0x66AF822: ??? +==40972== by 0x66AF96F: ??? +==40972== by 0xC0BF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40972== by 0xC0BF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40972== by 0xC075922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40972== by 0xC01A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40972== by 0x83D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40972== by 0x836DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40972== by 0x7064D38: PetscInitialize (pinit.c:924) +==40972== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40972== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40972== by 0x11769E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40972== by 0x1128D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40972== by 0x115638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40972== by 0x1154D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40972== by 0x115B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40972== by 0x110B55: main (TestVentilationProblem.cpp:19) +==40972== +==40972== Open file descriptor 115: +==40972== +==40972== +==40972== Open file descriptor 112: +==40972== +==40972== +==40972== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVentilationProblem_valgrind.txt +==40972== +==40972== +==40972== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40972== +==40972== +==40972== +==40972== HEAP SUMMARY: +==40972== in use at exit: 618,247 bytes in 8,234 blocks +==40972== total heap usage: 5,806,636 allocs, 5,798,402 frees, 1,825,959,991 bytes allocated +==40972== +==40972== LEAK SUMMARY: +==40972== definitely lost: 0 bytes in 0 blocks +==40972== indirectly lost: 0 bytes in 0 blocks +==40972== possibly lost: 0 bytes in 0 blocks +==40972== still reachable: 24 bytes in 2 blocks +==40972== suppressed: 618,223 bytes in 8,232 blocks +==40972== Reachable blocks (those to which a pointer was found) are not shown. +==40972== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40972== +==40972== For lists of detected and suppressed errors, rerun with: -s +==40972== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestVertexBasedCellPopulationForCrypt_valgrind.txt b/log-files/2024-09-07_08-54-51/TestVertexBasedCellPopulationForCrypt_valgrind.txt new file mode 100644 index 000000000..1bf1f3c86 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestVertexBasedCellPopulationForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40347== Memcheck, a memory error detector +==40347== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40347== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40347== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info +==40347== Parent PID: 23903 +==40347== +==40347== +==40347== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40347== Open file descriptor 12: +==40347== at 0x1257007D: pipe (pipe.c:29) +==40347== by 0x1B36D07D: ??? +==40347== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40347== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40347== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40347== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40347== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40347== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40347== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40347== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40347== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40347== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40347== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40347== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) +==40347== +==40347== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40347== at 0x12574A1C: __open_nocancel (open64_nocancel.c:39) +==40347== by 0x124F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40347== by 0x11D74822: ??? +==40347== by 0x11D7496F: ??? +==40347== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40347== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40347== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40347== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40347== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40347== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40347== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40347== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40347== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40347== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40347== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40347== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40347== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40347== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40347== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) +==40347== +==40347== Open file descriptor 115: +==40347== +==40347== +==40347== Open file descriptor 112: +==40347== +==40347== +==40347== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt +==40347== +==40347== +==40347== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40347== +==40347== +==40347== +==40347== HEAP SUMMARY: +==40347== in use at exit: 618,446 bytes in 8,240 blocks +==40347== total heap usage: 53,905 allocs, 45,665 frees, 1,338,963,178 bytes allocated +==40347== +==40347== LEAK SUMMARY: +==40347== definitely lost: 0 bytes in 0 blocks +==40347== indirectly lost: 0 bytes in 0 blocks +==40347== possibly lost: 0 bytes in 0 blocks +==40347== still reachable: 136 bytes in 4 blocks +==40347== suppressed: 618,310 bytes in 8,236 blocks +==40347== Reachable blocks (those to which a pointer was found) are not shown. +==40347== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40347== +==40347== For lists of detected and suppressed errors, rerun with: -s +==40347== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestVertexBasedCellPopulation_valgrind.txt b/log-files/2024-09-07_08-54-51/TestVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..d469f7626 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26044== Memcheck, a memory error detector +==26044== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26044== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26044== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26044== Parent PID: 23903 +==26044== +==26044== +==26044== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26044== Open file descriptor 12: +==26044== at 0x10CF207D: pipe (pipe.c:29) +==26044== by 0x196AD07D: ??? +==26044== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26044== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26044== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26044== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26044== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26044== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26044== by 0x3F7529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26044== by 0x3EC0B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26044== by 0x3F20D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26044== by 0x3F1F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26044== by 0x3F260B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26044== by 0x3EA4D5: main (TestVertexBasedCellPopulation.cpp:19) +==26044== +==26044== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26044== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26044== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26044== by 0xF136822: ??? +==26044== by 0xF13696F: ??? +==26044== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26044== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26044== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26044== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26044== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26044== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26044== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26044== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26044== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26044== by 0x3F7529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26044== by 0x3EC0B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26044== by 0x3F20D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26044== by 0x3F1F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26044== by 0x3F260B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26044== by 0x3EA4D5: main (TestVertexBasedCellPopulation.cpp:19) +==26044== +==26044== Open file descriptor 115: +==26044== +==26044== +==26044== Open file descriptor 112: +==26044== +==26044== +==26044== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulation_valgrind.txt +==26044== +==26044== +==26044== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26044== +==26044== +==26044== +==26044== HEAP SUMMARY: +==26044== in use at exit: 618,350 bytes in 8,239 blocks +==26044== total heap usage: 171,088 allocs, 162,849 frees, 1,350,452,422 bytes allocated +==26044== +==26044== LEAK SUMMARY: +==26044== definitely lost: 0 bytes in 0 blocks +==26044== indirectly lost: 0 bytes in 0 blocks +==26044== possibly lost: 0 bytes in 0 blocks +==26044== still reachable: 56 bytes in 3 blocks +==26044== suppressed: 618,294 bytes in 8,236 blocks +==26044== Reachable blocks (those to which a pointer was found) are not shown. +==26044== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26044== +==26044== For lists of detected and suppressed errors, rerun with: -s +==26044== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestVertexBasedDivisionRules_valgrind.txt b/log-files/2024-09-07_08-54-51/TestVertexBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..311f03f4d --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestVertexBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==26045== Memcheck, a memory error detector +==26045== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26045== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26045== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVertexBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==26045== Parent PID: 23903 +==26045== +==26045== +==26045== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26045== Open file descriptor 12: +==26045== at 0x10DD907D: pipe (pipe.c:29) +==26045== by 0x196AD07D: ??? +==26045== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26045== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26045== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26045== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26045== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26045== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26045== by 0x147723: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26045== by 0x14201D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26045== by 0x144D0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26045== by 0x144BAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26045== by 0x145241: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26045== by 0x140445: main (TestVertexBasedDivisionRules.cpp:19) +==26045== +==26045== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26045== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==26045== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26045== by 0xF136822: ??? +==26045== by 0xF13696F: ??? +==26045== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26045== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26045== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26045== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26045== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26045== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26045== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26045== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26045== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26045== by 0x147723: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26045== by 0x14201D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26045== by 0x144D0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26045== by 0x144BAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26045== by 0x145241: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26045== by 0x140445: main (TestVertexBasedDivisionRules.cpp:19) +==26045== +==26045== Open file descriptor 115: +==26045== +==26045== +==26045== Open file descriptor 112: +==26045== +==26045== +==26045== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedDivisionRules_valgrind.txt +==26045== +==26045== +==26045== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26045== +==26045== +==26045== +==26045== HEAP SUMMARY: +==26045== in use at exit: 618,350 bytes in 8,239 blocks +==26045== total heap usage: 54,154 allocs, 45,915 frees, 1,339,150,349 bytes allocated +==26045== +==26045== LEAK SUMMARY: +==26045== definitely lost: 0 bytes in 0 blocks +==26045== indirectly lost: 0 bytes in 0 blocks +==26045== possibly lost: 0 bytes in 0 blocks +==26045== still reachable: 56 bytes in 3 blocks +==26045== suppressed: 618,294 bytes in 8,236 blocks +==26045== Reachable blocks (those to which a pointer was found) are not shown. +==26045== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26045== +==26045== For lists of detected and suppressed errors, rerun with: -s +==26045== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestVertexCryptBoundaryForce_valgrind.txt b/log-files/2024-09-07_08-54-51/TestVertexCryptBoundaryForce_valgrind.txt new file mode 100644 index 000000000..bfb1dbb3f --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestVertexCryptBoundaryForce_valgrind.txt @@ -0,0 +1,73 @@ +==40184== Memcheck, a memory error detector +==40184== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40184== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40184== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info +==40184== Parent PID: 23903 +==40184== +==40184== +==40184== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40184== Open file descriptor 12: +==40184== at 0x110B907D: pipe (pipe.c:29) +==40184== by 0x1B36F07D: ??? +==40184== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40184== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40184== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40184== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40184== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40184== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40184== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40184== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40184== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40184== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40184== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40184== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) +==40184== +==40184== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40184== at 0x110BDA1C: __open_nocancel (open64_nocancel.c:39) +==40184== by 0x11041BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40184== by 0x109F6822: ??? +==40184== by 0x109F696F: ??? +==40184== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40184== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40184== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40184== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40184== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40184== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40184== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40184== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40184== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40184== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40184== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40184== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40184== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40184== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40184== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) +==40184== +==40184== Open file descriptor 115: +==40184== +==40184== +==40184== Open file descriptor 112: +==40184== +==40184== +==40184== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexCryptBoundaryForce_valgrind.txt +==40184== +==40184== +==40184== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40184== +==40184== +==40184== +==40184== HEAP SUMMARY: +==40184== in use at exit: 618,366 bytes in 8,239 blocks +==40184== total heap usage: 56,512 allocs, 48,273 frees, 1,339,181,155 bytes allocated +==40184== +==40184== LEAK SUMMARY: +==40184== definitely lost: 0 bytes in 0 blocks +==40184== indirectly lost: 0 bytes in 0 blocks +==40184== possibly lost: 0 bytes in 0 blocks +==40184== still reachable: 56 bytes in 3 blocks +==40184== suppressed: 618,310 bytes in 8,236 blocks +==40184== Reachable blocks (those to which a pointer was found) are not shown. +==40184== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40184== +==40184== For lists of detected and suppressed errors, rerun with: -s +==40184== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestVertexElement_valgrind.txt b/log-files/2024-09-07_08-54-51/TestVertexElement_valgrind.txt new file mode 100644 index 000000000..5b96f6c0a --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestVertexElement_valgrind.txt @@ -0,0 +1,73 @@ +==24672== Memcheck, a memory error detector +==24672== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24672== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24672== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexElement -malloc_debug -malloc_dump -memory_info +==24672== Parent PID: 23903 +==24672== +==24672== +==24672== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24672== Open file descriptor 12: +==24672== at 0x69F607D: pipe (pipe.c:29) +==24672== by 0x100C307D: ??? +==24672== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24672== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24672== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24672== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==24672== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24672== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24672== by 0x11E098: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24672== by 0x119413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24672== by 0x11C02C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24672== by 0x11BF27: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24672== by 0x11C53B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24672== by 0x117C15: main (TestVertexElement.cpp:18) +==24672== +==24672== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24672== at 0x69FAA1C: __open_nocancel (open64_nocancel.c:39) +==24672== by 0x697EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24672== by 0x658F822: ??? +==24672== by 0x658F96F: ??? +==24672== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24672== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24672== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24672== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24672== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24672== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24672== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==24672== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24672== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24672== by 0x11E098: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24672== by 0x119413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24672== by 0x11C02C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24672== by 0x11BF27: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24672== by 0x11C53B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24672== by 0x117C15: main (TestVertexElement.cpp:18) +==24672== +==24672== Open file descriptor 115: +==24672== +==24672== +==24672== Open file descriptor 112: +==24672== +==24672== +==24672== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexElement_valgrind.txt +==24672== +==24672== +==24672== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24672== +==24672== +==24672== +==24672== HEAP SUMMARY: +==24672== in use at exit: 618,222 bytes in 8,238 blocks +==24672== total heap usage: 47,569 allocs, 39,331 frees, 1,338,396,889 bytes allocated +==24672== +==24672== LEAK SUMMARY: +==24672== definitely lost: 0 bytes in 0 blocks +==24672== indirectly lost: 0 bytes in 0 blocks +==24672== possibly lost: 0 bytes in 0 blocks +==24672== still reachable: 24 bytes in 2 blocks +==24672== suppressed: 618,198 bytes in 8,236 blocks +==24672== Reachable blocks (those to which a pointer was found) are not shown. +==24672== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24672== +==24672== For lists of detected and suppressed errors, rerun with: -s +==24672== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestVertexMeshReader_valgrind.txt b/log-files/2024-09-07_08-54-51/TestVertexMeshReader_valgrind.txt new file mode 100644 index 000000000..4d7996883 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestVertexMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24687== Memcheck, a memory error detector +==24687== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24687== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24687== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMeshReader -malloc_debug -malloc_dump -memory_info +==24687== Parent PID: 23903 +==24687== +==24687== +==24687== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24687== Open file descriptor 12: +==24687== at 0x690F07D: pipe (pipe.c:29) +==24687== by 0x100C307D: ??? +==24687== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24687== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24687== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24687== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24687== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24687== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24687== by 0x1205C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24687== by 0x11B52D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24687== by 0x11E602: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24687== by 0x11E4A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24687== by 0x11EB39: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24687== by 0x119955: main (TestVertexMeshReader.cpp:19) +==24687== +==24687== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24687== at 0x6913A1C: __open_nocancel (open64_nocancel.c:39) +==24687== by 0x6897BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24687== by 0x658F822: ??? +==24687== by 0x658F96F: ??? +==24687== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24687== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24687== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24687== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24687== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24687== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24687== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24687== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24687== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24687== by 0x1205C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24687== by 0x11B52D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24687== by 0x11E602: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24687== by 0x11E4A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24687== by 0x11EB39: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24687== by 0x119955: main (TestVertexMeshReader.cpp:19) +==24687== +==24687== Open file descriptor 115: +==24687== +==24687== +==24687== Open file descriptor 112: +==24687== +==24687== +==24687== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMeshReader_valgrind.txt +==24687== +==24687== +==24687== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24687== +==24687== +==24687== +==24687== HEAP SUMMARY: +==24687== in use at exit: 618,222 bytes in 8,238 blocks +==24687== total heap usage: 47,844 allocs, 39,606 frees, 1,338,788,204 bytes allocated +==24687== +==24687== LEAK SUMMARY: +==24687== definitely lost: 0 bytes in 0 blocks +==24687== indirectly lost: 0 bytes in 0 blocks +==24687== possibly lost: 0 bytes in 0 blocks +==24687== still reachable: 24 bytes in 2 blocks +==24687== suppressed: 618,198 bytes in 8,236 blocks +==24687== Reachable blocks (those to which a pointer was found) are not shown. +==24687== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24687== +==24687== For lists of detected and suppressed errors, rerun with: -s +==24687== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestVertexMeshWriter_valgrind.txt b/log-files/2024-09-07_08-54-51/TestVertexMeshWriter_valgrind.txt new file mode 100644 index 000000000..f38aab713 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestVertexMeshWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24688== Memcheck, a memory error detector +==24688== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24688== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24688== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMeshWriter -malloc_debug -malloc_dump -memory_info +==24688== Parent PID: 23903 +==24688== +==24688== +==24688== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24688== Open file descriptor 12: +==24688== at 0x81F007D: pipe (pipe.c:29) +==24688== by 0x100C307D: ??? +==24688== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24688== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24688== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24688== by 0x667ED38: PetscInitialize (pinit.c:924) +==24688== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24688== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24688== by 0x12CC41: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24688== by 0x1260AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24688== by 0x128CC8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24688== by 0x128B68: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24688== by 0x1291FF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24688== by 0x1244D5: main (TestVertexMeshWriter.cpp:19) +==24688== +==24688== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24688== at 0x81F4A1C: __open_nocancel (open64_nocancel.c:39) +==24688== by 0x8178BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24688== by 0x790D822: ??? +==24688== by 0x790D96F: ??? +==24688== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24688== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24688== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24688== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24688== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24688== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24688== by 0x667ED38: PetscInitialize (pinit.c:924) +==24688== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24688== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24688== by 0x12CC41: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24688== by 0x1260AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24688== by 0x128CC8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24688== by 0x128B68: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24688== by 0x1291FF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24688== by 0x1244D5: main (TestVertexMeshWriter.cpp:19) +==24688== +==24688== Open file descriptor 115: +==24688== +==24688== +==24688== Open file descriptor 112: +==24688== +==24688== +==24688== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMeshWriter_valgrind.txt +==24688== +==24688== +==24688== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24688== +==24688== +==24688== +==24688== HEAP SUMMARY: +==24688== in use at exit: 618,222 bytes in 8,238 blocks +==24688== total heap usage: 63,653 allocs, 55,415 frees, 1,341,880,915 bytes allocated +==24688== +==24688== LEAK SUMMARY: +==24688== definitely lost: 0 bytes in 0 blocks +==24688== indirectly lost: 0 bytes in 0 blocks +==24688== possibly lost: 0 bytes in 0 blocks +==24688== still reachable: 24 bytes in 2 blocks +==24688== suppressed: 618,198 bytes in 8,236 blocks +==24688== Reachable blocks (those to which a pointer was found) are not shown. +==24688== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24688== +==24688== For lists of detected and suppressed errors, rerun with: -s +==24688== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestVertexMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestVertexMesh_valgrind.txt new file mode 100644 index 000000000..e0c3f5056 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24673== Memcheck, a memory error detector +==24673== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24673== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24673== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMesh -malloc_debug -malloc_dump -memory_info +==24673== Parent PID: 23903 +==24673== +==24673== +==24673== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24673== Open file descriptor 12: +==24673== at 0x823407D: pipe (pipe.c:29) +==24673== by 0x100C507D: ??? +==24673== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24673== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24673== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24673== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24673== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24673== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24673== by 0x14375F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24673== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24673== by 0x1413AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24673== by 0x14124C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24673== by 0x1418E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24673== by 0x13BF25: main (TestVertexMesh.cpp:19) +==24673== +==24673== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24673== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24673== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24673== by 0x658F822: ??? +==24673== by 0x658F96F: ??? +==24673== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24673== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24673== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24673== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24673== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24673== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24673== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24673== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24673== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24673== by 0x14375F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24673== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24673== by 0x1413AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24673== by 0x14124C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24673== by 0x1418E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24673== by 0x13BF25: main (TestVertexMesh.cpp:19) +==24673== +==24673== Open file descriptor 115: +==24673== +==24673== +==24673== Open file descriptor 112: +==24673== +==24673== +==24673== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMesh_valgrind.txt +==24673== +==24673== +==24673== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24673== +==24673== +==24673== +==24673== HEAP SUMMARY: +==24673== in use at exit: 620,774 bytes in 8,239 blocks +==24673== total heap usage: 96,572 allocs, 88,333 frees, 1,348,090,334 bytes allocated +==24673== +==24673== LEAK SUMMARY: +==24673== definitely lost: 0 bytes in 0 blocks +==24673== indirectly lost: 0 bytes in 0 blocks +==24673== possibly lost: 0 bytes in 0 blocks +==24673== still reachable: 2,576 bytes in 3 blocks +==24673== suppressed: 618,198 bytes in 8,236 blocks +==24673== Reachable blocks (those to which a pointer was found) are not shown. +==24673== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24673== +==24673== For lists of detected and suppressed errors, rerun with: -s +==24673== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-07_08-54-51/TestVisualizingWithParaviewTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestVisualizingWithParaviewTutorial_valgrind.txt new file mode 100644 index 000000000..68c747645 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestVisualizingWithParaviewTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40082== Memcheck, a memory error detector +==40082== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40082== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40082== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVisualizingWithParaviewTutorial -malloc_debug -malloc_dump -memory_info +==40082== Parent PID: 23903 +==40082== +==40082== +==40082== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40082== Open file descriptor 12: +==40082== at 0x10CB007D: pipe (pipe.c:29) +==40082== by 0x196AD07D: ??? +==40082== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40082== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40082== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40082== by 0xF225D38: PetscInitialize (pinit.c:924) +==40082== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40082== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40082== by 0x124111: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40082== by 0x11F773: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40082== by 0x121C86: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40082== by 0x121B81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40082== by 0x122195: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40082== by 0x11DF75: main (TestVisualizingWithParaviewTutorial.cpp:18) +==40082== +==40082== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40082== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==40082== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40082== by 0x104B4822: ??? +==40082== by 0x104B496F: ??? +==40082== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40082== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40082== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40082== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40082== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40082== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40082== by 0xF225D38: PetscInitialize (pinit.c:924) +==40082== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40082== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40082== by 0x124111: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40082== by 0x11F773: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40082== by 0x121C86: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40082== by 0x121B81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40082== by 0x122195: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40082== by 0x11DF75: main (TestVisualizingWithParaviewTutorial.cpp:18) +==40082== +==40082== Open file descriptor 115: +==40082== +==40082== +==40082== Open file descriptor 112: +==40082== +==40082== +==40082== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVisualizingWithParaviewTutorial_valgrind.txt +==40082== +==40082== +==40082== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40082== +==40082== +==40082== +==40082== HEAP SUMMARY: +==40082== in use at exit: 618,279 bytes in 8,235 blocks +==40082== total heap usage: 11,602,422 allocs, 11,594,187 frees, 2,651,993,616 bytes allocated +==40082== +==40082== LEAK SUMMARY: +==40082== definitely lost: 0 bytes in 0 blocks +==40082== indirectly lost: 0 bytes in 0 blocks +==40082== possibly lost: 0 bytes in 0 blocks +==40082== still reachable: 56 bytes in 3 blocks +==40082== suppressed: 618,223 bytes in 8,232 blocks +==40082== Reachable blocks (those to which a pointer was found) are not shown. +==40082== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40082== +==40082== For lists of detected and suppressed errors, rerun with: -s +==40082== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt b/log-files/2024-09-07_08-54-51/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt new file mode 100644 index 000000000..51769ae45 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt @@ -0,0 +1,73 @@ +==43360== Memcheck, a memory error detector +==43360== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43360== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43360== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestVoltageInterpolaterOntoMechanicsMesh -malloc_debug -malloc_dump -memory_info +==43360== Parent PID: 23903 +==43360== +==43360== +==43360== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43360== Open file descriptor 12: +==43360== at 0xB8FF07D: pipe (pipe.c:29) +==43360== by 0x1432407D: ??? +==43360== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43360== by 0xBC7A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43360== by 0xBC13D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43360== by 0x9F91D38: PetscInitialize (pinit.c:924) +==43360== by 0x9E681D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43360== by 0x9E68227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43360== by 0x11D9D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43360== by 0x119393: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43360== by 0x11B94C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43360== by 0x11B847: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43360== by 0x11BE5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43360== by 0x117B95: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) +==43360== +==43360== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43360== at 0xB903A1C: __open_nocancel (open64_nocancel.c:39) +==43360== by 0xB887BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43360== by 0xB220822: ??? +==43360== by 0xB22096F: ??? +==43360== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43360== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43360== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43360== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43360== by 0xBC7A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43360== by 0xBC13D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43360== by 0x9F91D38: PetscInitialize (pinit.c:924) +==43360== by 0x9E681D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43360== by 0x9E68227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43360== by 0x11D9D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43360== by 0x119393: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43360== by 0x11B94C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43360== by 0x11B847: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43360== by 0x11BE5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43360== by 0x117B95: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) +==43360== +==43360== Open file descriptor 115: +==43360== +==43360== +==43360== Open file descriptor 112: +==43360== +==43360== +==43360== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt +==43360== +==43360== +==43360== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43360== +==43360== +==43360== +==43360== HEAP SUMMARY: +==43360== in use at exit: 618,814 bytes in 8,248 blocks +==43360== total heap usage: 544,330 allocs, 536,082 frees, 1,522,645,464 bytes allocated +==43360== +==43360== LEAK SUMMARY: +==43360== definitely lost: 0 bytes in 0 blocks +==43360== indirectly lost: 0 bytes in 0 blocks +==43360== possibly lost: 0 bytes in 0 blocks +==43360== still reachable: 24 bytes in 2 blocks +==43360== suppressed: 618,790 bytes in 8,246 blocks +==43360== Reachable blocks (those to which a pointer was found) are not shown. +==43360== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43360== +==43360== For lists of detected and suppressed errors, rerun with: -s +==43360== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 38) diff --git a/log-files/2024-09-07_08-54-51/TestVolumeTrackingModifier_valgrind.txt b/log-files/2024-09-07_08-54-51/TestVolumeTrackingModifier_valgrind.txt new file mode 100644 index 000000000..80c41acc5 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestVolumeTrackingModifier_valgrind.txt @@ -0,0 +1,73 @@ +==39520== Memcheck, a memory error detector +==39520== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39520== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39520== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVolumeTrackingModifier -malloc_debug -malloc_dump -memory_info +==39520== Parent PID: 23903 +==39520== +==39520== +==39520== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39520== Open file descriptor 12: +==39520== at 0xF83B07D: pipe (pipe.c:29) +==39520== by 0x196AD07D: ??? +==39520== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39520== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39520== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39520== by 0x10127D38: PetscInitialize (pinit.c:924) +==39520== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39520== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39520== by 0x20235E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39520== by 0x1FA77F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39520== by 0x1FDF12: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39520== by 0x1FDE0D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39520== by 0x1FE421: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39520== by 0x1F8F75: main (TestVolumeTrackingModifier.cpp:18) +==39520== +==39520== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39520== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==39520== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39520== by 0xF136822: ??? +==39520== by 0xF13696F: ??? +==39520== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39520== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39520== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39520== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39520== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39520== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39520== by 0x10127D38: PetscInitialize (pinit.c:924) +==39520== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39520== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39520== by 0x20235E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39520== by 0x1FA77F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39520== by 0x1FDF12: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39520== by 0x1FDE0D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39520== by 0x1FE421: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39520== by 0x1F8F75: main (TestVolumeTrackingModifier.cpp:18) +==39520== +==39520== Open file descriptor 115: +==39520== +==39520== +==39520== Open file descriptor 112: +==39520== +==39520== +==39520== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVolumeTrackingModifier_valgrind.txt +==39520== +==39520== +==39520== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39520== +==39520== +==39520== +==39520== HEAP SUMMARY: +==39520== in use at exit: 618,295 bytes in 8,236 blocks +==39520== total heap usage: 11,260,957 allocs, 11,252,721 frees, 3,060,133,437 bytes allocated +==39520== +==39520== LEAK SUMMARY: +==39520== definitely lost: 0 bytes in 0 blocks +==39520== indirectly lost: 0 bytes in 0 blocks +==39520== possibly lost: 0 bytes in 0 blocks +==39520== still reachable: 72 bytes in 4 blocks +==39520== suppressed: 618,223 bytes in 8,232 blocks +==39520== Reachable blocks (those to which a pointer was found) are not shown. +==39520== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39520== +==39520== For lists of detected and suppressed errors, rerun with: -s +==39520== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-07_08-54-51/TestVoronoiVertexMeshGenerator_valgrind.txt b/log-files/2024-09-07_08-54-51/TestVoronoiVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..2014434df --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestVoronoiVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24696== Memcheck, a memory error detector +==24696== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24696== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24696== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVoronoiVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24696== Parent PID: 23903 +==24696== +==24696== +==24696== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24696== Open file descriptor 12: +==24696== at 0x6D3B07D: pipe (pipe.c:29) +==24696== by 0x100C507D: ??? +==24696== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24696== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24696== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24696== by 0x7017D38: PetscInitialize (pinit.c:924) +==24696== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24696== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24696== by 0x1216D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24696== by 0x11C6AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24696== by 0x11F25A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24696== by 0x11F0FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24696== by 0x11F791: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24696== by 0x11AAD5: main (TestVoronoiVertexMeshGenerator.cpp:19) +==24696== +==24696== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24696== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24696== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24696== by 0x658F822: ??? +==24696== by 0x658F96F: ??? +==24696== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24696== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24696== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24696== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24696== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24696== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24696== by 0x7017D38: PetscInitialize (pinit.c:924) +==24696== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24696== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24696== by 0x1216D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24696== by 0x11C6AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24696== by 0x11F25A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24696== by 0x11F0FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24696== by 0x11F791: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24696== by 0x11AAD5: main (TestVoronoiVertexMeshGenerator.cpp:19) +==24696== +==24696== Open file descriptor 115: +==24696== +==24696== +==24696== Open file descriptor 112: +==24696== +==24696== +==24696== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVoronoiVertexMeshGenerator_valgrind.txt +==24696== +==24696== +==24696== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24696== +==24696== +==24696== +==24696== HEAP SUMMARY: +==24696== in use at exit: 620,703 bytes in 8,235 blocks +==24696== total heap usage: 446,959 allocs, 438,724 frees, 1,381,744,599 bytes allocated +==24696== +==24696== LEAK SUMMARY: +==24696== definitely lost: 0 bytes in 0 blocks +==24696== indirectly lost: 0 bytes in 0 blocks +==24696== possibly lost: 0 bytes in 0 blocks +==24696== still reachable: 2,576 bytes in 3 blocks +==24696== suppressed: 618,127 bytes in 8,232 blocks +==24696== Reachable blocks (those to which a pointer was found) are not shown. +==24696== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24696== +==24696== For lists of detected and suppressed errors, rerun with: -s +==24696== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-07_08-54-51/TestVtkMeshReader_valgrind.txt b/log-files/2024-09-07_08-54-51/TestVtkMeshReader_valgrind.txt new file mode 100644 index 000000000..c21bcadf2 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestVtkMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24546== Memcheck, a memory error detector +==24546== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24546== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24546== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVtkMeshReader -malloc_debug -malloc_dump -memory_info +==24546== Parent PID: 23903 +==24546== +==24546== +==24546== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24546== Open file descriptor 12: +==24546== at 0x6D3B07D: pipe (pipe.c:29) +==24546== by 0x100C507D: ??? +==24546== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24546== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24546== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24546== by 0x7017D38: PetscInitialize (pinit.c:924) +==24546== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24546== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24546== by 0x12E1F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24546== by 0x12936D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24546== by 0x12C13E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24546== by 0x12BFDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24546== by 0x12C675: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24546== by 0x127795: main (TestVtkMeshReader.cpp:19) +==24546== +==24546== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24546== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24546== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24546== by 0x658F822: ??? +==24546== by 0x658F96F: ??? +==24546== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24546== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24546== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24546== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24546== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24546== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24546== by 0x7017D38: PetscInitialize (pinit.c:924) +==24546== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24546== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24546== by 0x12E1F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24546== by 0x12936D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24546== by 0x12C13E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24546== by 0x12BFDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24546== by 0x12C675: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24546== by 0x127795: main (TestVtkMeshReader.cpp:19) +==24546== +==24546== Open file descriptor 115: +==24546== +==24546== +==24546== Open file descriptor 112: +==24546== +==24546== +==24546== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVtkMeshReader_valgrind.txt +==24546== +==24546== +==24546== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24546== +==24546== +==24546== +==24546== HEAP SUMMARY: +==24546== in use at exit: 618,222 bytes in 8,238 blocks +==24546== total heap usage: 161,767 allocs, 153,529 frees, 1,348,897,192 bytes allocated +==24546== +==24546== LEAK SUMMARY: +==24546== definitely lost: 0 bytes in 0 blocks +==24546== indirectly lost: 0 bytes in 0 blocks +==24546== possibly lost: 0 bytes in 0 blocks +==24546== still reachable: 24 bytes in 2 blocks +==24546== suppressed: 618,198 bytes in 8,236 blocks +==24546== Reachable blocks (those to which a pointer was found) are not shown. +==24546== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24546== +==24546== For lists of detected and suppressed errors, rerun with: -s +==24546== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt b/log-files/2024-09-07_08-54-51/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt new file mode 100644 index 000000000..9fda9a82a --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt @@ -0,0 +1,73 @@ +==25222== Memcheck, a memory error detector +==25222== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25222== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25222== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestVtkNonlinearElasticitySolutionWriter -malloc_debug -malloc_dump -memory_info +==25222== Parent PID: 23903 +==25222== +==25222== +==25222== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25222== Open file descriptor 12: +==25222== at 0x82CA07D: pipe (pipe.c:29) +==25222== by 0x106D707D: ??? +==25222== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25222== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25222== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25222== by 0x688FD38: PetscInitialize (pinit.c:924) +==25222== by 0x67661D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25222== by 0x6766227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25222== by 0x132248: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25222== by 0x12D1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25222== by 0x1302BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25222== by 0x13015C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25222== by 0x1307F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25222== by 0x12B615: main (TestVtkNonlinearElasticitySolutionWriter.cpp:19) +==25222== +==25222== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25222== at 0x82CEA1C: __open_nocancel (open64_nocancel.c:39) +==25222== by 0x8252BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25222== by 0x7B1E822: ??? +==25222== by 0x7B1E96F: ??? +==25222== by 0xC0846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25222== by 0xC084938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25222== by 0xC03A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25222== by 0xBFDF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25222== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25222== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25222== by 0x688FD38: PetscInitialize (pinit.c:924) +==25222== by 0x67661D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25222== by 0x6766227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25222== by 0x132248: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25222== by 0x12D1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25222== by 0x1302BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25222== by 0x13015C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25222== by 0x1307F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25222== by 0x12B615: main (TestVtkNonlinearElasticitySolutionWriter.cpp:19) +==25222== +==25222== Open file descriptor 115: +==25222== +==25222== +==25222== Open file descriptor 112: +==25222== +==25222== +==25222== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt +==25222== +==25222== +==25222== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25222== +==25222== +==25222== +==25222== HEAP SUMMARY: +==25222== in use at exit: 618,270 bytes in 8,238 blocks +==25222== total heap usage: 419,051 allocs, 410,813 frees, 1,414,784,303 bytes allocated +==25222== +==25222== LEAK SUMMARY: +==25222== definitely lost: 0 bytes in 0 blocks +==25222== indirectly lost: 0 bytes in 0 blocks +==25222== possibly lost: 0 bytes in 0 blocks +==25222== still reachable: 24 bytes in 2 blocks +==25222== suppressed: 618,246 bytes in 8,236 blocks +==25222== Reachable blocks (those to which a pointer was found) are not shown. +==25222== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25222== +==25222== For lists of detected and suppressed errors, rerun with: -s +==25222== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestWarnings_valgrind.txt b/log-files/2024-09-07_08-54-51/TestWarnings_valgrind.txt new file mode 100644 index 000000000..de491ffc9 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestWarnings_valgrind.txt @@ -0,0 +1,73 @@ +==24151== Memcheck, a memory error detector +==24151== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24151== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24151== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestWarnings -malloc_debug -malloc_dump -memory_info +==24151== Parent PID: 23903 +==24151== +==24151== +==24151== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24151== Open file descriptor 12: +==24151== at 0x616907D: pipe (pipe.c:29) +==24151== by 0xAEA507D: ??? +==24151== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24151== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24151== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24151== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24151== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24151== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24151== by 0x114FFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24151== by 0x1106CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24151== by 0x11308E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24151== by 0x112F2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24151== by 0x1135C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24151== by 0x10EAF5: main (TestWarnings.cpp:19) +==24151== +==24151== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24151== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24151== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24151== by 0x5CB2822: ??? +==24151== by 0x5CB296F: ??? +==24151== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24151== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24151== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24151== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24151== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24151== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24151== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24151== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24151== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24151== by 0x114FFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24151== by 0x1106CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24151== by 0x11308E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24151== by 0x112F2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24151== by 0x1135C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24151== by 0x10EAF5: main (TestWarnings.cpp:19) +==24151== +==24151== Open file descriptor 115: +==24151== +==24151== +==24151== Open file descriptor 112: +==24151== +==24151== +==24151== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWarnings_valgrind.txt +==24151== +==24151== +==24151== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24151== +==24151== +==24151== +==24151== HEAP SUMMARY: +==24151== in use at exit: 617,838 bytes in 8,238 blocks +==24151== total heap usage: 45,669 allocs, 37,431 frees, 1,338,292,626 bytes allocated +==24151== +==24151== LEAK SUMMARY: +==24151== definitely lost: 0 bytes in 0 blocks +==24151== indirectly lost: 0 bytes in 0 blocks +==24151== possibly lost: 0 bytes in 0 blocks +==24151== still reachable: 24 bytes in 2 blocks +==24151== suppressed: 617,814 bytes in 8,236 blocks +==24151== Reachable blocks (those to which a pointer was found) are not shown. +==24151== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24151== +==24151== For lists of detected and suppressed errors, rerun with: -s +==24151== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-07_08-54-51/TestWntCellCycleOdeSystem_valgrind.txt b/log-files/2024-09-07_08-54-51/TestWntCellCycleOdeSystem_valgrind.txt new file mode 100644 index 000000000..1b8be4648 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestWntCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==40305== Memcheck, a memory error detector +==40305== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40305== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40305== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==40305== Parent PID: 23903 +==40305== +==40305== +==40305== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40305== Open file descriptor 12: +==40305== at 0x1085407D: pipe (pipe.c:29) +==40305== by 0x1B36E07D: ??? +==40305== by 0x155114CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40305== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40305== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40305== by 0xF131D38: PetscInitialize (pinit.c:924) +==40305== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40305== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40305== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40305== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40305== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40305== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40305== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40305== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) +==40305== +==40305== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40305== at 0x10858A1C: __open_nocancel (open64_nocancel.c:39) +==40305== by 0x107DCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40305== by 0xEFDD822: ??? +==40305== by 0xEFDD96F: ??? +==40305== by 0x155B66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40305== by 0x155B6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40305== by 0x1556C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40305== by 0x155112DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40305== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40305== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40305== by 0xF131D38: PetscInitialize (pinit.c:924) +==40305== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40305== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40305== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40305== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40305== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40305== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40305== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40305== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) +==40305== +==40305== Open file descriptor 115: +==40305== +==40305== +==40305== Open file descriptor 112: +==40305== +==40305== +==40305== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntCellCycleOdeSystem_valgrind.txt +==40305== +==40305== +==40305== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40305== +==40305== +==40305== +==40305== HEAP SUMMARY: +==40305== in use at exit: 618,334 bytes in 8,238 blocks +==40305== total heap usage: 185,587 allocs, 177,349 frees, 1,419,924,796 bytes allocated +==40305== +==40305== LEAK SUMMARY: +==40305== definitely lost: 0 bytes in 0 blocks +==40305== indirectly lost: 0 bytes in 0 blocks +==40305== possibly lost: 0 bytes in 0 blocks +==40305== still reachable: 24 bytes in 2 blocks +==40305== suppressed: 618,310 bytes in 8,236 blocks +==40305== Reachable blocks (those to which a pointer was found) are not shown. +==40305== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40305== +==40305== For lists of detected and suppressed errors, rerun with: -s +==40305== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestWntConcentration_valgrind.txt b/log-files/2024-09-07_08-54-51/TestWntConcentration_valgrind.txt new file mode 100644 index 000000000..433ca4f16 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestWntConcentration_valgrind.txt @@ -0,0 +1,73 @@ +==40164== Memcheck, a memory error detector +==40164== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40164== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40164== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntConcentration -malloc_debug -malloc_dump -memory_info +==40164== Parent PID: 23903 +==40164== +==40164== +==40164== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40164== Open file descriptor 12: +==40164== at 0x1269907D: pipe (pipe.c:29) +==40164== by 0x1B36D07D: ??? +==40164== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40164== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40164== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40164== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40164== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40164== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40164== by 0x1449B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40164== by 0x13F409: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40164== by 0x14221A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40164== by 0x1420BA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40164== by 0x142751: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40164== by 0x13D825: main (TestWntConcentration.cpp:19) +==40164== +==40164== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40164== at 0x1269DA1C: __open_nocancel (open64_nocancel.c:39) +==40164== by 0x12621BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40164== by 0x109F6822: ??? +==40164== by 0x109F696F: ??? +==40164== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40164== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40164== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40164== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40164== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40164== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40164== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40164== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40164== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40164== by 0x1449B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40164== by 0x13F409: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40164== by 0x14221A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40164== by 0x1420BA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40164== by 0x142751: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40164== by 0x13D825: main (TestWntConcentration.cpp:19) +==40164== +==40164== Open file descriptor 115: +==40164== +==40164== +==40164== Open file descriptor 112: +==40164== +==40164== +==40164== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntConcentration_valgrind.txt +==40164== +==40164== +==40164== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40164== +==40164== +==40164== +==40164== HEAP SUMMARY: +==40164== in use at exit: 618,446 bytes in 8,240 blocks +==40164== total heap usage: 56,679 allocs, 48,439 frees, 1,340,183,456 bytes allocated +==40164== +==40164== LEAK SUMMARY: +==40164== definitely lost: 0 bytes in 0 blocks +==40164== indirectly lost: 0 bytes in 0 blocks +==40164== possibly lost: 0 bytes in 0 blocks +==40164== still reachable: 136 bytes in 4 blocks +==40164== suppressed: 618,310 bytes in 8,236 blocks +==40164== Reachable blocks (those to which a pointer was found) are not shown. +==40164== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40164== +==40164== For lists of detected and suppressed errors, rerun with: -s +==40164== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-07_08-54-51/TestWritingPdeSolversTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestWritingPdeSolversTutorial_valgrind.txt new file mode 100644 index 000000000..104d047e2 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestWritingPdeSolversTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==25019== Memcheck, a memory error detector +==25019== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25019== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25019== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestWritingPdeSolversTutorial -malloc_debug -malloc_dump -memory_info +==25019== Parent PID: 23903 +==25019== +==25019== +==25019== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25019== Open file descriptor 12: +==25019== at 0x855A07D: pipe (pipe.c:29) +==25019== by 0x104D507D: ??? +==25019== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25019== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25019== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25019== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==25019== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25019== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25019== by 0x14C16C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25019== by 0x147113: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25019== by 0x149DC4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25019== by 0x149CBF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25019== by 0x14A2D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25019== by 0x145915: main (TestWritingPdeSolversTutorial.cpp:18) +==25019== +==25019== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25019== at 0x855EA1C: __open_nocancel (open64_nocancel.c:39) +==25019== by 0x84E2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25019== by 0x7DAE822: ??? +==25019== by 0x7DAE96F: ??? +==25019== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25019== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25019== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25019== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25019== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25019== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25019== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==25019== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25019== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25019== by 0x14C16C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25019== by 0x147113: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25019== by 0x149DC4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25019== by 0x149CBF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25019== by 0x14A2D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25019== by 0x145915: main (TestWritingPdeSolversTutorial.cpp:18) +==25019== +==25019== Open file descriptor 115: +==25019== +==25019== +==25019== Open file descriptor 112: +==25019== +==25019== +==25019== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingPdeSolversTutorial_valgrind.txt +==25019== +==25019== +==25019== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25019== +==25019== +==25019== +==25019== HEAP SUMMARY: +==25019== in use at exit: 618,663 bytes in 8,244 blocks +==25019== total heap usage: 1,131,260 allocs, 1,123,016 frees, 1,457,327,608 bytes allocated +==25019== +==25019== LEAK SUMMARY: +==25019== definitely lost: 0 bytes in 0 blocks +==25019== indirectly lost: 0 bytes in 0 blocks +==25019== possibly lost: 0 bytes in 0 blocks +==25019== still reachable: 24 bytes in 2 blocks +==25019== suppressed: 618,639 bytes in 8,242 blocks +==25019== Reachable blocks (those to which a pointer was found) are not shown. +==25019== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25019== +==25019== For lists of detected and suppressed errors, rerun with: -s +==25019== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 32) diff --git a/log-files/2024-09-07_08-54-51/TestWritingPdeSolversTwoTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestWritingPdeSolversTwoTutorial_valgrind.txt new file mode 100644 index 000000000..42c03d3ed --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestWritingPdeSolversTwoTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==25040== Memcheck, a memory error detector +==25040== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25040== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25040== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestWritingPdeSolversTwoTutorial -malloc_debug -malloc_dump -memory_info +==25040== Parent PID: 23903 +==25040== +==25040== +==25040== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25040== Open file descriptor 12: +==25040== at 0x855A07D: pipe (pipe.c:29) +==25040== by 0x104D507D: ??? +==25040== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25040== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25040== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25040== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==25040== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25040== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25040== by 0x13DDFA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25040== by 0x138DF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25040== by 0x13B99A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25040== by 0x13B895: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25040== by 0x13BEA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25040== by 0x1375F5: main (TestWritingPdeSolversTwoTutorial.cpp:18) +==25040== +==25040== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25040== at 0x855EA1C: __open_nocancel (open64_nocancel.c:39) +==25040== by 0x84E2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25040== by 0x7DAE822: ??? +==25040== by 0x7DAE96F: ??? +==25040== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25040== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25040== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25040== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25040== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25040== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25040== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==25040== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25040== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25040== by 0x13DDFA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25040== by 0x138DF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25040== by 0x13B99A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25040== by 0x13B895: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25040== by 0x13BEA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25040== by 0x1375F5: main (TestWritingPdeSolversTwoTutorial.cpp:18) +==25040== +==25040== Open file descriptor 115: +==25040== +==25040== +==25040== Open file descriptor 112: +==25040== +==25040== +==25040== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingPdeSolversTwoTutorial_valgrind.txt +==25040== +==25040== +==25040== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25040== +==25040== +==25040== +==25040== HEAP SUMMARY: +==25040== in use at exit: 618,734 bytes in 8,248 blocks +==25040== total heap usage: 128,432 allocs, 120,184 frees, 1,367,379,013 bytes allocated +==25040== +==25040== LEAK SUMMARY: +==25040== definitely lost: 0 bytes in 0 blocks +==25040== indirectly lost: 0 bytes in 0 blocks +==25040== possibly lost: 0 bytes in 0 blocks +==25040== still reachable: 24 bytes in 2 blocks +==25040== suppressed: 618,710 bytes in 8,246 blocks +==25040== Reachable blocks (those to which a pointer was found) are not shown. +==25040== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25040== +==25040== For lists of detected and suppressed errors, rerun with: -s +==25040== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 38) diff --git a/log-files/2024-09-07_08-54-51/TestWritingTestsTutorial_valgrind.txt b/log-files/2024-09-07_08-54-51/TestWritingTestsTutorial_valgrind.txt new file mode 100644 index 000000000..6e791a7b9 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestWritingTestsTutorial_valgrind.txt @@ -0,0 +1,36 @@ +==24152== Memcheck, a memory error detector +==24152== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24152== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24152== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestWritingTestsTutorial -malloc_debug -malloc_dump -memory_info +==24152== Parent PID: 23903 +==24152== +==24152== +==24152== FILE DESCRIPTORS: 7 open (3 std) at exit. +==24152== Open file descriptor 115: +==24152== +==24152== +==24152== Open file descriptor 112: +==24152== +==24152== +==24152== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingTestsTutorial_valgrind.txt +==24152== +==24152== +==24152== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24152== +==24152== +==24152== +==24152== HEAP SUMMARY: +==24152== in use at exit: 24 bytes in 2 blocks +==24152== total heap usage: 3,071 allocs, 3,069 frees, 350,873 bytes allocated +==24152== +==24152== LEAK SUMMARY: +==24152== definitely lost: 0 bytes in 0 blocks +==24152== indirectly lost: 0 bytes in 0 blocks +==24152== possibly lost: 0 bytes in 0 blocks +==24152== still reachable: 24 bytes in 2 blocks +==24152== suppressed: 0 bytes in 0 blocks +==24152== Reachable blocks (those to which a pointer was found) are not shown. +==24152== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24152== +==24152== For lists of detected and suppressed errors, rerun with: -s +==24152== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-07_08-54-51/TestXmlMeshWriters_valgrind.txt b/log-files/2024-09-07_08-54-51/TestXmlMeshWriters_valgrind.txt new file mode 100644 index 000000000..579565a82 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/TestXmlMeshWriters_valgrind.txt @@ -0,0 +1,73 @@ +==24720== Memcheck, a memory error detector +==24720== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24720== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24720== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestXmlMeshWriters -malloc_debug -malloc_dump -memory_info +==24720== Parent PID: 23903 +==24720== +==24720== +==24720== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24720== Open file descriptor 12: +==24720== at 0x708F07D: pipe (pipe.c:29) +==24720== by 0x100C307D: ??? +==24720== by 0xBCEF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24720== by 0x86DB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24720== by 0x8674D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24720== by 0x736BD38: PetscInitialize (pinit.c:924) +==24720== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24720== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24720== by 0x141D14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24720== by 0x13CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24720== by 0x13FA20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24720== by 0x13F8C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24720== by 0x13FF57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24720== by 0x13B075: main (TestXmlMeshWriters.cpp:19) +==24720== +==24720== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24720== at 0x7093A1C: __open_nocancel (open64_nocancel.c:39) +==24720== by 0x7017BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24720== by 0x658F822: ??? +==24720== by 0x658F96F: ??? +==24720== by 0xBD946DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24720== by 0xBD94938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24720== by 0xBD4A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24720== by 0xBCEF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24720== by 0x86DB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24720== by 0x8674D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24720== by 0x736BD38: PetscInitialize (pinit.c:924) +==24720== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24720== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24720== by 0x141D14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24720== by 0x13CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24720== by 0x13FA20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24720== by 0x13F8C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24720== by 0x13FF57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24720== by 0x13B075: main (TestXmlMeshWriters.cpp:19) +==24720== +==24720== Open file descriptor 115: +==24720== +==24720== +==24720== Open file descriptor 112: +==24720== +==24720== +==24720== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestXmlMeshWriters_valgrind.txt +==24720== +==24720== +==24720== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24720== +==24720== +==24720== +==24720== HEAP SUMMARY: +==24720== in use at exit: 618,222 bytes in 8,238 blocks +==24720== total heap usage: 453,223 allocs, 444,985 frees, 1,402,960,024 bytes allocated +==24720== +==24720== LEAK SUMMARY: +==24720== definitely lost: 0 bytes in 0 blocks +==24720== indirectly lost: 0 bytes in 0 blocks +==24720== possibly lost: 0 bytes in 0 blocks +==24720== still reachable: 24 bytes in 2 blocks +==24720== suppressed: 618,198 bytes in 8,236 blocks +==24720== Reachable blocks (those to which a pointer was found) are not shown. +==24720== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24720== +==24720== For lists of detected and suppressed errors, rerun with: -s +==24720== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 68 from 36) diff --git a/log-files/2024-09-07_08-54-51/Test_valgrind.txt b/log-files/2024-09-07_08-54-51/Test_valgrind.txt new file mode 100644 index 000000000..a7c9c5bcc --- /dev/null +++ b/log-files/2024-09-07_08-54-51/Test_valgrind.txt @@ -0,0 +1,73 @@ +==42516== Memcheck, a memory error detector +==42516== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42516== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42516== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCodegen -malloc_debug -malloc_dump -memory_info +==42516== Parent PID: 23903 +==42516== +==42516== +==42516== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42516== Open file descriptor 12: +==42516== at 0x9E0107D: pipe (pipe.c:29) +==42516== by 0x1432407D: ??? +==42516== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42516== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42516== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42516== by 0x85DDD38: PetscInitialize (pinit.c:924) +==42516== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42516== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42516== by 0x135779: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42516== by 0x12FB0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42516== by 0x132D44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42516== by 0x132BE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42516== by 0x13327B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42516== by 0x12ADA5: main (Test.cpp:19) +==42516== +==42516== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42516== at 0x9E05A1C: __open_nocancel (open64_nocancel.c:39) +==42516== by 0x9D89BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42516== by 0x8489822: ??? +==42516== by 0x848996F: ??? +==42516== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42516== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42516== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42516== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42516== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42516== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42516== by 0x85DDD38: PetscInitialize (pinit.c:924) +==42516== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42516== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42516== by 0x135779: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42516== by 0x12FB0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42516== by 0x132D44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42516== by 0x132BE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42516== by 0x13327B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42516== by 0x12ADA5: main (Test.cpp:19) +==42516== +==42516== Open file descriptor 115: +==42516== +==42516== +==42516== Open file descriptor 112: +==42516== +==42516== +==42516== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test_valgrind.txt +==42516== +==42516== +==42516== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42516== +==42516== +==42516== +==42516== HEAP SUMMARY: +==42516== in use at exit: 623,606 bytes in 8,246 blocks +==42516== total heap usage: 941,057 allocs, 932,811 frees, 2,144,096,872 bytes allocated +==42516== +==42516== LEAK SUMMARY: +==42516== definitely lost: 0 bytes in 0 blocks +==42516== indirectly lost: 0 bytes in 0 blocks +==42516== possibly lost: 0 bytes in 0 blocks +==42516== still reachable: 5,367 bytes in 14 blocks +==42516== suppressed: 618,239 bytes in 8,232 blocks +==42516== Reachable blocks (those to which a pointer was found) are not shown. +==42516== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42516== +==42516== For lists of detected and suppressed errors, rerun with: -s +==42516== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2024-09-07_08-54-51/index.html b/log-files/2024-09-07_08-54-51/index.html new file mode 100644 index 000000000..dd14d58b6 --- /dev/null +++ b/log-files/2024-09-07_08-54-51/index.html @@ -0,0 +1,425 @@ + + + + + + Chaste valgrind memtest output + + +

Memtest output for commit 333233612e3dcc941d260418acd7b5ccdc30390e on branch develop

+
+

Summary of 398 tests:

+

green: 398

+

orange: 0

+

red: 0

+
+

Test1D3DLinearEllipticSolver: No leaks found (test output)

+

Test1dMonodomainShannonCvodeBenchmarks: No leaks found (test output)

+

Test2dVertexBasedSimulationWithSrnModels: No leaks found (test output)

+

Test: No leaks found (test output)

+

TestAbstractAnalyticJacobian: No leaks found (test output)

+

TestAbstractContinuumMechanicsAssembler: No leaks found (test output)

+

TestAbstractContractionCellFactory: No leaks found (test output)

+

TestAbstractCvodeSystem: No leaks found (test output)

+

TestAbstractFeCableIntegralAssembler: No leaks found (test output)

+

TestAbstractFeSurfaceIntegralAssembler: No leaks found (test output)

+

TestAbstractFeVolumeIntegralAssembler: No leaks found (test output)

+

TestAbstractFunctionalCalculator: No leaks found (test output)

+

TestAbstractIvpOdeSolver: No leaks found (test output)

+

TestAbstractOdeSystem: No leaks found (test output)

+

TestAbstractPurkinjeCellFactory: No leaks found (test output)

+

TestAcinarUnitModels: No leaks found (test output)

+

TestAirwayBranch: No leaks found (test output)

+

TestAirwayGeneration: No leaks found (test output)

+

TestAirwayGenerator: No leaks found (test output)

+

TestAirwayPropertiesCalculator: No leaks found (test output)

+

TestAirwayRemesher: No leaks found (test output)

+

TestAirwayTreeWalker: No leaks found (test output)

+

TestAirwayWallModels: No leaks found (test output)

+

TestAlarcon2004OxygenBasedCellCycleOdeSystem: No leaks found (test output)

+

TestArchiveCell: No leaks found (test output)

+

TestArchiveFormat: No leaks found (test output)

+

TestArchiving: No leaks found (test output)

+

TestArchivingExtendedBidomain: No leaks found (test output)

+

TestArchivingHelperClasses: No leaks found (test output)

+

TestBackwardEulerIvpOdeSolver: No leaks found (test output)

+

TestBenchmarkPreconditionersForMeshIndependence: No leaks found (test output)

+

TestBidomainDistributedMesh: No leaks found (test output)

+

TestBidomainProblem: No leaks found (test output)

+

TestBidomainTissue: No leaks found (test output)

+

TestBidomainWithBathProblem: No leaks found (test output)

+

TestBidomainWithSvi: No leaks found (test output)

+

TestBoundaryConditionsContainer: No leaks found (test output)

+

TestBuskeForces: No leaks found (test output)

+

TestCaBasedCellPopulation: No leaks found (test output)

+

TestCaBasedDivisionRules: No leaks found (test output)

+

TestCaUpdateRules: No leaks found (test output)

+

TestCableTestProblem: No leaks found (test output)

+

TestCardiacElectroMechanicsFurtherFunctionality: No leaks found (test output)

+

TestCardiacElectroMechanicsProblem: No leaks found (test output)

+

TestCardiacSimulation: No leaks found (test output)

+

TestCardiacSimulationArchiver: No leaks found (test output)

+

TestCell: No leaks found (test output)

+

TestCellBasedCellProperties: No leaks found (test output)

+

TestCellBasedEllipticPdeSolver: No leaks found (test output)

+

TestCellBasedEllipticPdes: No leaks found (test output)

+

TestCellBasedEventHandler: No leaks found (test output)

+

TestCellBasedParabolicPdes: No leaks found (test output)

+

TestCellBetaCateninWriter: No leaks found (test output)

+

TestCellCycleModelOdeSolver: No leaks found (test output)

+

TestCellDataMaps: No leaks found (test output)

+

TestCellForCrypt: No leaks found (test output)

+

TestCellKillers: No leaks found (test output)

+

TestCellMutationStates: No leaks found (test output)

+

TestCellPopulationBoundaryConditions: No leaks found (test output)

+

TestCellPopulationCountWriters: No leaks found (test output)

+

TestCellPopulationEventWriters: No leaks found (test output)

+

TestCellPopulationWriters: No leaks found (test output)

+

TestCellProliferativeTypes: No leaks found (test output)

+

TestCellProperties: No leaks found (test output)

+

TestCellPropertyCollection: No leaks found (test output)

+

TestCellPropertyRegistry: No leaks found (test output)

+

TestCellSrn: No leaks found (test output)

+

TestCellWriters: No leaks found (test output)

+

TestCellsGenerator: No leaks found (test output)

+

TestCellwiseDataGradient: No leaks found (test output)

+

TestCentreBasedDivisionRules: No leaks found (test output)

+

TestChasteBuildInfo: No leaks found (test output)

+

TestChastePoint: No leaks found (test output)

+

TestChasteRegions: No leaks found (test output)

+

TestChebyshevIteration: No leaks found (test output)

+

TestCheckpointing: No leaks found (test output)

+

TestCitations: No leaks found (test output)

+

TestCodegenPresent: No leaks found (test output)

+

TestColumnDataReaderWriter: No leaks found (test output)

+

TestCombinedOdeSystem: No leaks found (test output)

+

TestCommandLineArguments: No leaks found (test output)

+

TestCommandLineArgumentsTutorial: No leaks found (test output)

+

TestCompressibleNonlinearElasticitySolver: No leaks found (test output)

+

TestConductivityTensors: No leaks found (test output)

+

TestConstBoundaryCondition: No leaks found (test output)

+

TestContinuumMechanicsNeumannBcsAssembler: No leaks found (test output)

+

TestContractionModels: No leaks found (test output)

+

TestConvergenceTester: No leaks found (test output)

+

TestCoupledCableTestProblem: No leaks found (test output)

+

TestCreatingAndUsingANewCellBasedSimulationModifierTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellCycleModelTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellKillerTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellMutationStateTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellPropertyTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewForceTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewSrnModelTutorial: No leaks found (test output)

+

TestCreatingAndUsingNewCellBasedWritersTutorial: No leaks found (test output)

+

TestCryptCellsGenerator: No leaks found (test output)

+

TestCryptDivisionRules: No leaks found (test output)

+

TestCryptProjectionForce: No leaks found (test output)

+

TestCryptProjectionStatistics: No leaks found (test output)

+

TestCryptSimulation1d: No leaks found (test output)

+

TestCryptSimulation2dWithMeshBasedCellPopulation: No leaks found (test output)

+

TestCryptSimulation2dWithVertexBasedCellPopulation: No leaks found (test output)

+

TestCryptSimulationBoundaryCondition: No leaks found (test output)

+

TestCryptStatistics: No leaks found (test output)

+

TestCvodeAdaptor: No leaks found (test output)

+

TestCvodeCells: No leaks found (test output)

+

TestCvodeCellsWithDataClamp: No leaks found (test output)

+

TestCvodeWithJacobian: No leaks found (test output)

+

TestCwd: No leaks found (test output)

+

TestCylindrical2dMesh: No leaks found (test output)

+

TestCylindrical2dNodesOnlyMesh: No leaks found (test output)

+

TestCylindrical2dVertexMesh: No leaks found (test output)

+

TestCylindricalHoneycombMeshGenerator: No leaks found (test output)

+

TestCylindricalHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestDebug: No leaks found (test output)

+

TestDeltaNotchModifier: No leaks found (test output)

+

TestDeltaNotchOdeSystem: No leaks found (test output)

+

TestDiscreteSystemForceCalculator: No leaks found (test output)

+

TestDistanceMapCalculator: No leaks found (test output)

+

TestDistributedBoxCollection: No leaks found (test output)

+

TestDistributedQuadraticMesh: No leaks found (test output)

+

TestDistributedTetrahedralMesh: No leaks found (test output)

+

TestDistributedVector: No leaks found (test output)

+

TestDivisionBiasTrackingModifier: No leaks found (test output)

+

TestDynamicVentilation: No leaks found (test output)

+

TestDynamicallyLoadedCellModels: No leaks found (test output)

+

TestEdge: No leaks found (test output)

+

TestEdgeInteriorSrn: No leaks found (test output)

+

TestElectroMechanicsExactSolution: No leaks found (test output)

+

TestElectroMechanicsProblemDefinition: No leaks found (test output)

+

TestElectrodes: No leaks found (test output)

+

TestElement: No leaks found (test output)

+

TestElementAttributes: No leaks found (test output)

+

TestEllipticBoxDomainPdeModifier: No leaks found (test output)

+

TestEllipticGrowingDomainPdeModifier: No leaks found (test output)

+

TestException: No leaks found (test output)

+

TestExecutableSupport: No leaks found (test output)

+

TestExplicitCardiacMechanicsSolver: No leaks found (test output)

+

TestExtendedBidomainProblem: No leaks found (test output)

+

TestExtendedBidomainTissue: No leaks found (test output)

+

TestExtendedVsBidomainProblem: No leaks found (test output)

+

TestExtrinsicPullModifier: No leaks found (test output)

+

TestFemlabMeshReader: No leaks found (test output)

+

TestFibreReader: No leaks found (test output)

+

TestFibreReaderAbilityExtendedBidomainProblem: No leaks found (test output)

+

TestFibreWriter: No leaks found (test output)

+

TestFileComparison: No leaks found (test output)

+

TestFileFinder: No leaks found (test output)

+

TestFineCoarseMeshPair: No leaks found (test output)

+

TestFloatingPointDivisionByZero: No leaks found (test output)

+

TestFloatingPointDivisionByZeroPetsc: No leaks found (test output)

+

TestFluidSource: No leaks found (test output)

+

TestForces: No leaks found (test output)

+

TestFourthOrderTensor: No leaks found (test output)

+

TestGIModifiedModels: No leaks found (test output)

+

TestGRL1IvpOdeSolver: No leaks found (test output)

+

TestGRL2IvpOdeSolver: No leaks found (test output)

+

TestGaussianQuadratureRule: No leaks found (test output)

+

TestGeneralizedRushLarsen: No leaks found (test output)

+

TestGenericEventHandler: No leaks found (test output)

+

TestGmshMeshReader: No leaks found (test output)

+

TestGoldbeter1991OdeSystem: No leaks found (test output)

+

TestHdf5Converters: No leaks found (test output)

+

TestHdf5DataReader: No leaks found (test output)

+

TestHdf5DataWriter: No leaks found (test output)

+

TestHdf5ToVisualizerConverters: No leaks found (test output)

+

TestHeartConfig: No leaks found (test output)

+

TestHeartEventHandler: No leaks found (test output)

+

TestHeartFileFinder: No leaks found (test output)

+

TestHeartGeometryInformation: No leaks found (test output)

+

TestHeartRegionCodes: No leaks found (test output)

+

TestHelloWorld: No leaks found (test output)

+

TestHeterogeneousConductivities: No leaks found (test output)

+

TestHeun2IvpOdeSolver: No leaks found (test output)

+

TestHodgkinHuxleySquidAxon1952OriginalOdeSystem: No leaks found (test output)

+

TestHoneycombMeshGenerator: No leaks found (test output)

+

TestHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestImmersedBoundary2dArrays: No leaks found (test output)

+

TestImmersedBoundaryCellPopulation: No leaks found (test output)

+

TestImmersedBoundaryDivisionRules: No leaks found (test output)

+

TestImmersedBoundaryElement: No leaks found (test output)

+

TestImmersedBoundaryFftInterface: No leaks found (test output)

+

TestImmersedBoundaryForces: No leaks found (test output)

+

TestImmersedBoundaryHoneycombMeshGenerator: No leaks found (test output)

+

TestImmersedBoundaryMesh: No leaks found (test output)

+

TestImmersedBoundaryMeshReader: No leaks found (test output)

+

TestImmersedBoundaryMeshWriter: No leaks found (test output)

+

TestImmersedBoundaryPalisadeMeshGenerator: No leaks found (test output)

+

TestImmersedBoundarySimulationModifier: No leaks found (test output)

+

TestImmersedBoundarySvgWriter: No leaks found (test output)

+

TestImpedancePostProcessor: No leaks found (test output)

+

TestImplicitCardiacMechanicsSolver: No leaks found (test output)

+

TestIncompressibleNonlinearElasticitySolver: No leaks found (test output)

+

TestIonicModels: No leaks found (test output)

+

TestIonicModelsWithSacs: No leaks found (test output)

+

TestLinearBasisFunction: No leaks found (test output)

+

TestLinearParabolicPdeSystemForCoupledOdeSystem: No leaks found (test output)

+

TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver: No leaks found (test output)

+

TestLinearSpringWithVariableSpringConstantsForce: No leaks found (test output)

+

TestLinearSystem: No leaks found (test output)

+

TestLobePropertiesCalculator: No leaks found (test output)

+

TestLogFile: No leaks found (test output)

+

TestMajorAirwaysCentreLinesCleaner: No leaks found (test output)

+

TestMaterialLaws: No leaks found (test output)

+

TestMathsCustomFunctions: No leaks found (test output)

+

TestMatrixVentilationProblem: No leaks found (test output)

+

TestMemfemMeshReader: No leaks found (test output)

+

TestMeshBasedCellPopulation: No leaks found (test output)

+

TestMeshBasedCellPopulationWithGhostNodes: No leaks found (test output)

+

TestMeshUtilityFunctions: No leaks found (test output)

+

TestMeshWriters: No leaks found (test output)

+

TestMirams2010WntOdeSystem: No leaks found (test output)

+

TestMixedDimensionMesh: No leaks found (test output)

+

TestMockEulerIvpOdeSolver: No leaks found (test output)

+

TestModernCppFeatures: No leaks found (test output)

+

TestModifiers: No leaks found (test output)

+

TestMonodomainConductionVelocity: No leaks found (test output)

+

TestMonodomainFitzHughNagumo: No leaks found (test output)

+

TestMonodomainMassLumping: No leaks found (test output)

+

TestMonodomainProblem: No leaks found (test output)

+

TestMonodomainPurkinjeAssemblersAndSolver: No leaks found (test output)

+

TestMonodomainPurkinjeProblem: No leaks found (test output)

+

TestMonodomainStiffnessMatrixAssembler: No leaks found (test output)

+

TestMonodomainTissue: No leaks found (test output)

+

TestMonodomainWithSvi: No leaks found (test output)

+

TestMonodomainWithTimeAdaptivity: No leaks found (test output)

+

TestMoreMechanics: No leaks found (test output)

+

TestMultiLobeAirwayGenerator: No leaks found (test output)

+

TestMutableMesh: No leaks found (test output)

+

TestMutableMeshRemesh: No leaks found (test output)

+

TestMutableVertexMesh: No leaks found (test output)

+

TestMutableVertexMeshOperationsWithPopulationSrn: No leaks found (test output)

+

TestMutableVertexMeshReMesh: No leaks found (test output)

+

TestMutableVertexMeshRosetteMethods: No leaks found (test output)

+

TestNeumannStimulus: No leaks found (test output)

+

TestNhsModelWithBackwardSolver: No leaks found (test output)

+

TestNode: No leaks found (test output)

+

TestNodeAttributes: No leaks found (test output)

+

TestNodeBasedCellPopulation: No leaks found (test output)

+

TestNodeBasedCellPopulationParallelMethods: No leaks found (test output)

+

TestNodeBasedCellPopulationWithBuskeUpdate: No leaks found (test output)

+

TestNodeBasedCellPopulationWithParticles: No leaks found (test output)

+

TestNodesOnlyMesh: No leaks found (test output)

+

TestNonCachedTetrahedralMesh: No leaks found (test output)

+

TestNonlinearElasticityTools: No leaks found (test output)

+

TestNonlinearSolvers: No leaks found (test output)

+

TestNormallyDistributedTargetAreaModifier: No leaks found (test output)

+

TestNumericFileComparison: No leaks found (test output)

+

TestNumericalMethods: No leaks found (test output)

+

TestObjectCommunicator: No leaks found (test output)

+

TestObsoleteBoxCollection: No leaks found (test output)

+

TestOdeBasedCellCycleModels: No leaks found (test output)

+

TestOdeBasedCellCycleModelsForCrypt: No leaks found (test output)

+

TestOdeBasedSrnModels: No leaks found (test output)

+

TestOdeLinearSystemSolver: No leaks found (test output)

+

TestOffLatticeCryptProjectionSimulation: No leaks found (test output)

+

TestOffLatticeRandomFieldGenerator: No leaks found (test output)

+

TestOffLatticeSimulation3d: No leaks found (test output)

+

TestOffLatticeSimulation: No leaks found (test output)

+

TestOffLatticeSimulationWithBuskeForces: No leaks found (test output)

+

TestOffLatticeSimulationWithNodeBasedCellPopulation: No leaks found (test output)

+

TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d: No leaks found (test output)

+

TestOffLatticeSimulationWithPdes: No leaks found (test output)

+

TestOffLatticeSimulationWithVertexBasedCellPopulation: No leaks found (test output)

+

TestOnLatticeSimulationWithCaBasedCellPopulation: No leaks found (test output)

+

TestOnLatticeSimulationWithPdes: No leaks found (test output)

+

TestOnLatticeSimulationWithPottsBasedCellPopulation: No leaks found (test output)

+

TestOperatorSplittingMonodomainSolver: No leaks found (test output)

+

TestOutputDirectoryFifoQueue: No leaks found (test output)

+

TestOutputFileHandler: No leaks found (test output)

+

TestPCBlockDiagonal: No leaks found (test output)

+

TestPCLDUFactorisation: No leaks found (test output)

+

TestPCTwoLevelsBlockDiagonal: No leaks found (test output)

+

TestPapillaryFibreCalculator: No leaks found (test output)

+

TestParabolicBoxDomainPdeModifier: No leaks found (test output)

+

TestParabolicGrowingDomainPdeModifier: No leaks found (test output)

+

TestParallelCellsGenerator: No leaks found (test output)

+

TestParallelColumnDataReaderWriter: No leaks found (test output)

+

TestParallelWriterPerformance: No leaks found (test output)

+

TestPdeSimulationTime: No leaks found (test output)

+

TestPdeTestClasses: No leaks found (test output)

+

TestPerElementWriter: No leaks found (test output)

+

TestPeriodicNodeBasedCellPopulationParallelMethods: No leaks found (test output)

+

TestPeriodicNodesOnlyMesh: No leaks found (test output)

+

TestPetscEvents: No leaks found (test output)

+

TestPetscMatTools: No leaks found (test output)

+

TestPetscSetup: No leaks found (test output)

+

TestPetscTools2: No leaks found (test output)

+

TestPetscTools: No leaks found (test output)

+

TestPetscVecTools: No leaks found (test output)

+

TestPlaneStimulusCellFactory: No leaks found (test output)

+

TestPostProcessingWriter: No leaks found (test output)

+

TestPottsBasedCellPopulation: No leaks found (test output)

+

TestPottsBasedCryptSimulation: No leaks found (test output)

+

TestPottsElement: No leaks found (test output)

+

TestPottsMesh: No leaks found (test output)

+

TestPottsMeshGenerator: No leaks found (test output)

+

TestPottsMeshReader: No leaks found (test output)

+

TestPottsMeshWriter: No leaks found (test output)

+

TestPottsUpdateRules: No leaks found (test output)

+

TestProblemDefinitions: No leaks found (test output)

+

TestProgressReporter: No leaks found (test output)

+

TestPropagationPropertiesCalculator: No leaks found (test output)

+

TestPseudoEcgCalculator: No leaks found (test output)

+

TestQuadraticBasisFunction: No leaks found (test output)

+

TestQuadraticMesh: No leaks found (test output)

+

TestQuadraturePointsGroup: No leaks found (test output)

+

TestRKC21IvpOdeSolver: No leaks found (test output)

+

TestRandomNumberGenerator: No leaks found (test output)

+

TestReplicatableVector: No leaks found (test output)

+

TestRepresentativeImmersedBoundarySimulations: No leaks found (test output)

+

TestRestitutionStimuli: No leaks found (test output)

+

TestRungeKuttaFehlbergIvpOdeSolver: No leaks found (test output)

+

TestRunningContactInhibitionSimulationsTutorial: No leaks found (test output)

+

TestRunningCryptSimulationsWithMutationsTutorial: No leaks found (test output)

+

TestRunningDeltaNotchSimulationsTutorial: No leaks found (test output)

+

TestRunningDifferentialAdhesionSimulationsTutorial: No leaks found (test output)

+

TestRunningImmersedBoundarySimulationsTutorial: No leaks found (test output)

+

TestRunningMeshBasedCryptSimulationsTutorial: No leaks found (test output)

+

TestRunningMeshBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningNodeBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningPottsBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningTumourSpheroidSimulationsTutorial: No leaks found (test output)

+

TestRunningVertexBasedCryptSimulationsTutorial: No leaks found (test output)

+

TestRunningVertexBasedSimulationsTutorial: No leaks found (test output)

+

TestRushLarsen: No leaks found (test output)

+

TestShovingCaBasedDivisionRules: No leaks found (test output)

+

TestSimpleCellCycleModels: No leaks found (test output)

+

TestSimpleCellCycleModelsForCrypt: No leaks found (test output)

+

TestSimpleDataWriter: No leaks found (test output)

+

TestSimpleImpedanceProblem: No leaks found (test output)

+

TestSimpleLinearEllipticSolver: No leaks found (test output)

+

TestSimpleLinearParabolicSolver: No leaks found (test output)

+

TestSimpleNonlinearEllipticSolver: No leaks found (test output)

+

TestSimpleTargetAreaModifier: No leaks found (test output)

+

TestSimulationTime: No leaks found (test output)

+

TestSimulationsWithEllipticBoxDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithEllipticGrowingDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithParabolicBoxDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithParabolicGrowingDomainPdeModifier: No leaks found (test output)

+

TestSingleOdeWntCellCycleModel: No leaks found (test output)

+

TestSloughingCellKillers: No leaks found (test output)

+

TestSolveLaplacianWithQuadratics: No leaks found (test output)

+

TestSolvingCoupledPdes: No leaks found (test output)

+

TestSolvingNonlinearPdesTutorial: No leaks found (test output)

+

TestSolvingOdesTutorial: No leaks found (test output)

+

TestSolvingStiffOdeSystems: No leaks found (test output)

+

TestSpiralWaveAndPhase: No leaks found (test output)

+

TestSteadyStateRunner: No leaks found (test output)

+

TestStepSizeException: No leaks found (test output)

+

TestStimulus: No leaks found (test output)

+

TestStimulusBoundaryCondition: No leaks found (test output)

+

TestStimulusFactory: No leaks found (test output)

+

TestStokesFlowAssembler: No leaks found (test output)

+

TestStokesFlowSolver: No leaks found (test output)

+

TestStreeterFibreGenerator: No leaks found (test output)

+

TestSuperellipseGenerator: No leaks found (test output)

+

TestT2SwapCellKiller: No leaks found (test output)

+

TestTargetAreaLinearGrowthModifier: No leaks found (test output)

+

TestTetrahedralMesh: No leaks found (test output)

+

TestTimeAdaptivityController: No leaks found (test output)

+

TestTimeStepper: No leaks found (test output)

+

TestTimer: No leaks found (test output)

+

TestToroidal2dMesh: No leaks found (test output)

+

TestToroidal2dVertexMesh: No leaks found (test output)

+

TestToroidalHoneycombMeshGenerator: No leaks found (test output)

+

TestToroidalHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestTransformations: No leaks found (test output)

+

TestTrianglesMeshReader: No leaks found (test output)

+

TestTysonNovak2001OdeSystem: No leaks found (test output)

+

TestUblasCustomFunctions: No leaks found (test output)

+

TestUniformGridRandomFieldGenerator: No leaks found (test output)

+

TestVanLeeuwen2009WntSwatCellCycleOdeSystem: No leaks found (test output)

+

TestVentilationProblem: No leaks found (test output)

+

TestVertexBasedCellPopulation: No leaks found (test output)

+

TestVertexBasedCellPopulationForCrypt: No leaks found (test output)

+

TestVertexBasedDivisionRules: No leaks found (test output)

+

TestVertexCryptBoundaryForce: No leaks found (test output)

+

TestVertexElement: No leaks found (test output)

+

TestVertexMesh: No leaks found (test output)

+

TestVertexMeshReader: No leaks found (test output)

+

TestVertexMeshWriter: No leaks found (test output)

+

TestVisualizingWithParaviewTutorial: No leaks found (test output)

+

TestVoltageInterpolaterOntoMechanicsMesh: No leaks found (test output)

+

TestVolumeTrackingModifier: No leaks found (test output)

+

TestVoronoiVertexMeshGenerator: No leaks found (test output)

+

TestVtkMeshReader: No leaks found (test output)

+

TestVtkNonlinearElasticitySolutionWriter: No leaks found (test output)

+

TestWarnings: No leaks found (test output)

+

TestWntCellCycleOdeSystem: No leaks found (test output)

+

TestWntConcentration: No leaks found (test output)

+

TestWritingPdeSolversTutorial: No leaks found (test output)

+

TestWritingPdeSolversTwoTutorial: No leaks found (test output)

+

TestWritingTestsTutorial: No leaks found (test output)

+

TestXmlMeshWriters: No leaks found (test output)


+ + diff --git a/log-files/index.html b/log-files/index.html index 35463a9c4..a58b06ecb 100644 --- a/log-files/index.html +++ b/log-files/index.html @@ -15,6 +15,16 @@

Index of Valgrind Memcheck output

September 2024

+ + + + + +
+ 2024-09-07_08-54-51 + greendevelop + 333233612e3dcc941d260418acd7b5ccdc30390e +
2024-09-03_15-23-39