From e2d69970d99d05c9c95def5cc34648f45fff9708 Mon Sep 17 00:00:00 2001 From: github-action Date: Mon, 14 Oct 2024 22:10:17 +0000 Subject: [PATCH] upload memtest results --- .../Test1D3DLinearEllipticSolver_valgrind.txt | 73 +++ ...odomainShannonCvodeBenchmarks_valgrind.txt | 73 +++ ...xBasedSimulationWithSrnModels_valgrind.txt | 73 +++ .../TestAbstractAnalyticJacobian_valgrind.txt | 73 +++ ...ctContinuumMechanicsAssembler_valgrind.txt | 73 +++ ...bstractContractionCellFactory_valgrind.txt | 73 +++ .../TestAbstractCvodeSystem_valgrind.txt | 73 +++ ...tractFeCableIntegralAssembler_valgrind.txt | 73 +++ ...actFeSurfaceIntegralAssembler_valgrind.txt | 73 +++ ...ractFeVolumeIntegralAssembler_valgrind.txt | 73 +++ ...tAbstractFunctionalCalculator_valgrind.txt | 73 +++ .../TestAbstractIvpOdeSolver_valgrind.txt | 73 +++ .../TestAbstractOdeSystem_valgrind.txt | 73 +++ ...stAbstractPurkinjeCellFactory_valgrind.txt | 73 +++ .../TestAcinarUnitModels_valgrind.txt | 36 ++ 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b/log-files/2024-10-14_17-51-53/Test1D3DLinearEllipticSolver_valgrind.txt new file mode 100644 index 000000000..3d530cc74 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/Test1D3DLinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24990== Memcheck, a memory error detector +==24990== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24990== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24990== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/Test1D3DLinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==24990== Parent PID: 23966 +==24990== +==24990== +==24990== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24990== Open file descriptor 12: +==24990== at 0x84EF07D: pipe (pipe.c:29) +==24990== by 0x104E607D: ??? +==24990== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24990== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24990== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24990== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==24990== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24990== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24990== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24990== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24990== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24990== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24990== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24990== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18) +==24990== +==24990== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24990== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==24990== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24990== by 0x7D43822: ??? +==24990== by 0x7D4396F: ??? +==24990== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24990== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24990== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24990== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24990== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24990== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24990== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==24990== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24990== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24990== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24990== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24990== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24990== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24990== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24990== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18) +==24990== +==24990== Open file descriptor 116: +==24990== +==24990== +==24990== Open file descriptor 113: +==24990== +==24990== +==24990== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1D3DLinearEllipticSolver_valgrind.txt +==24990== +==24990== +==24990== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24990== +==24990== +==24990== +==24990== HEAP SUMMARY: +==24990== in use at exit: 618,270 bytes in 8,238 blocks +==24990== total heap usage: 51,120 allocs, 42,882 frees, 1,339,258,702 bytes allocated +==24990== +==24990== LEAK SUMMARY: +==24990== definitely lost: 0 bytes in 0 blocks +==24990== indirectly lost: 0 bytes in 0 blocks +==24990== possibly lost: 0 bytes in 0 blocks +==24990== still reachable: 24 bytes in 2 blocks +==24990== suppressed: 618,246 bytes in 8,236 blocks +==24990== Reachable blocks (those to which a pointer was found) are not shown. +==24990== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24990== +==24990== For lists of detected and suppressed errors, rerun with: -s +==24990== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt b/log-files/2024-10-14_17-51-53/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt new file mode 100644 index 000000000..30b819177 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt @@ -0,0 +1,73 @@ +==43393== Memcheck, a memory error detector +==43393== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43393== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43393== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/Test1dMonodomainShannonCvodeBenchmarks -malloc_debug -malloc_dump -memory_info +==43393== Parent PID: 23966 +==43393== +==43393== +==43393== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43393== Open file descriptor 12: +==43393== at 0xA7CE07D: pipe (pipe.c:29) +==43393== by 0x1433707D: ??? +==43393== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43393== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43393== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43393== by 0xAB57D38: PetscInitialize (pinit.c:924) +==43393== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43393== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43393== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43393== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43393== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43393== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43393== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43393== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18) +==43393== +==43393== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43393== at 0xA7D2A1C: __open_nocancel (open64_nocancel.c:39) +==43393== by 0xA756BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43393== by 0xA0EF822: ??? +==43393== by 0xA0EF96F: ??? +==43393== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43393== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43393== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43393== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43393== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43393== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43393== by 0xAB57D38: PetscInitialize (pinit.c:924) +==43393== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43393== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43393== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43393== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43393== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43393== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43393== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43393== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18) +==43393== +==43393== Open file descriptor 116: +==43393== +==43393== +==43393== Open file descriptor 113: +==43393== +==43393== +==43393== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt +==43393== +==43393== +==43393== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43393== +==43393== +==43393== +==43393== HEAP SUMMARY: +==43393== in use at exit: 618,759 bytes in 8,244 blocks +==43393== total heap usage: 319,602 allocs, 311,358 frees, 1,398,098,789 bytes allocated +==43393== +==43393== LEAK SUMMARY: +==43393== definitely lost: 0 bytes in 0 blocks +==43393== indirectly lost: 0 bytes in 0 blocks +==43393== possibly lost: 0 bytes in 0 blocks +==43393== still reachable: 24 bytes in 2 blocks +==43393== suppressed: 618,735 bytes in 8,242 blocks +==43393== Reachable blocks (those to which a pointer was found) are not shown. +==43393== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43393== +==43393== For lists of detected and suppressed errors, rerun with: -s +==43393== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 31) diff --git a/log-files/2024-10-14_17-51-53/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt b/log-files/2024-10-14_17-51-53/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt new file mode 100644 index 000000000..ebfd4fe3f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt @@ -0,0 +1,73 @@ +==26177== Memcheck, a memory error detector +==26177== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26177== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26177== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info +==26177== Parent PID: 23966 +==26177== +==26177== +==26177== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26177== Open file descriptor 12: +==26177== at 0xF80107D: pipe (pipe.c:29) +==26177== by 0x196BC07D: ??? +==26177== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26177== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26177== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26177== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26177== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26177== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26177== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26177== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26177== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26177== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26177== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26177== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) +==26177== +==26177== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26177== at 0xF805A1C: __open_nocancel (open64_nocancel.c:39) +==26177== by 0xF789BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26177== by 0xF13E822: ??? +==26177== by 0xF13E96F: ??? +==26177== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26177== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26177== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26177== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26177== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26177== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26177== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26177== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26177== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26177== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26177== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26177== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26177== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26177== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26177== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) +==26177== +==26177== Open file descriptor 116: +==26177== +==26177== +==26177== Open file descriptor 113: +==26177== +==26177== +==26177== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt +==26177== +==26177== +==26177== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26177== +==26177== +==26177== +==26177== HEAP SUMMARY: +==26177== in use at exit: 618,366 bytes in 8,239 blocks +==26177== total heap usage: 1,124,533 allocs, 1,116,294 frees, 1,415,927,428 bytes allocated +==26177== +==26177== LEAK SUMMARY: +==26177== definitely lost: 0 bytes in 0 blocks +==26177== indirectly lost: 0 bytes in 0 blocks +==26177== possibly lost: 0 bytes in 0 blocks +==26177== still reachable: 56 bytes in 3 blocks +==26177== suppressed: 618,310 bytes in 8,236 blocks +==26177== Reachable blocks (those to which a pointer was found) are not shown. +==26177== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26177== +==26177== For lists of detected and suppressed errors, rerun with: -s +==26177== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestAbstractAnalyticJacobian_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAbstractAnalyticJacobian_valgrind.txt new file mode 100644 index 000000000..457f0e893 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAbstractAnalyticJacobian_valgrind.txt @@ -0,0 +1,73 @@ +==24908== Memcheck, a memory error detector +==24908== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24908== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24908== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractAnalyticJacobian -malloc_debug -malloc_dump -memory_info +==24908== Parent PID: 23966 +==24908== +==24908== +==24908== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24908== Open file descriptor 12: +==24908== at 0x4F1007D: pipe (pipe.c:29) +==24908== by 0xB1EE07D: ??? +==24908== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24908== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24908== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24908== by 0x5308D38: PetscInitialize (pinit.c:924) +==24908== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24908== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24908== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24908== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24908== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24908== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24908== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24908== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18) +==24908== +==24908== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24908== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39) +==24908== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24908== by 0x4B76822: ??? +==24908== by 0x4B7696F: ??? +==24908== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24908== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24908== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24908== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24908== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24908== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24908== by 0x5308D38: PetscInitialize (pinit.c:924) +==24908== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24908== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24908== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24908== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24908== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24908== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24908== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24908== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18) +==24908== +==24908== Open file descriptor 116: +==24908== +==24908== +==24908== Open file descriptor 113: +==24908== +==24908== +==24908== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractAnalyticJacobian_valgrind.txt +==24908== +==24908== +==24908== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24908== +==24908== +==24908== +==24908== HEAP SUMMARY: +==24908== in use at exit: 617,934 bytes in 8,238 blocks +==24908== total heap usage: 45,032 allocs, 36,794 frees, 1,338,169,981 bytes allocated +==24908== +==24908== LEAK SUMMARY: +==24908== definitely lost: 0 bytes in 0 blocks +==24908== indirectly lost: 0 bytes in 0 blocks +==24908== possibly lost: 0 bytes in 0 blocks +==24908== still reachable: 24 bytes in 2 blocks +==24908== suppressed: 617,910 bytes in 8,236 blocks +==24908== Reachable blocks (those to which a pointer was found) are not shown. +==24908== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24908== +==24908== For lists of detected and suppressed errors, rerun with: -s +==24908== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestAbstractContinuumMechanicsAssembler_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAbstractContinuumMechanicsAssembler_valgrind.txt new file mode 100644 index 000000000..588776f33 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAbstractContinuumMechanicsAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25215== Memcheck, a memory error detector +==25215== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25215== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25215== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestAbstractContinuumMechanicsAssembler -malloc_debug -malloc_dump -memory_info +==25215== Parent PID: 23966 +==25215== +==25215== +==25215== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25215== Open file descriptor 12: +==25215== at 0x84EF07D: pipe (pipe.c:29) +==25215== by 0x104E607D: ??? +==25215== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25215== by 0x8B56418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25215== by 0x8AEFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25215== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25215== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25215== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25215== by 0x1507F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25215== by 0x14B24D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25215== by 0x14E462: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25215== by 0x14E302: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25215== by 0x14E999: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25215== by 0x149675: main (TestAbstractContinuumMechanicsAssembler.cpp:19) +==25215== +==25215== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25215== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25215== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25215== by 0x7D43822: ??? +==25215== by 0x7D4396F: ??? +==25215== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25215== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25215== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25215== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25215== by 0x8B56418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25215== by 0x8AEFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25215== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25215== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25215== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25215== by 0x1507F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25215== by 0x14B24D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25215== by 0x14E462: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25215== by 0x14E302: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25215== by 0x14E999: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25215== by 0x149675: main (TestAbstractContinuumMechanicsAssembler.cpp:19) +==25215== +==25215== Open file descriptor 116: +==25215== +==25215== +==25215== Open file descriptor 113: +==25215== +==25215== +==25215== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractContinuumMechanicsAssembler_valgrind.txt +==25215== +==25215== +==25215== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25215== +==25215== +==25215== +==25215== HEAP SUMMARY: +==25215== in use at exit: 618,270 bytes in 8,238 blocks +==25215== total heap usage: 50,433 allocs, 42,195 frees, 1,339,924,161 bytes allocated +==25215== +==25215== LEAK SUMMARY: +==25215== definitely lost: 0 bytes in 0 blocks +==25215== indirectly lost: 0 bytes in 0 blocks +==25215== possibly lost: 0 bytes in 0 blocks +==25215== still reachable: 24 bytes in 2 blocks +==25215== suppressed: 618,246 bytes in 8,236 blocks +==25215== Reachable blocks (those to which a pointer was found) are not shown. +==25215== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25215== +==25215== For lists of detected and suppressed errors, rerun with: -s +==25215== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestAbstractContractionCellFactory_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAbstractContractionCellFactory_valgrind.txt new file mode 100644 index 000000000..a8a8b32c8 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAbstractContractionCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==43502== Memcheck, a memory error detector +==43502== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43502== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43502== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestAbstractContractionCellFactory -malloc_debug -malloc_dump -memory_info +==43502== Parent PID: 23966 +==43502== +==43502== +==43502== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43502== Open file descriptor 12: +==43502== at 0xA8DB07D: pipe (pipe.c:29) +==43502== by 0x1433707D: ??? +==43502== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43502== by 0xBE54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43502== by 0xBDEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43502== by 0xAAE4D38: PetscInitialize (pinit.c:924) +==43502== by 0xA1C21D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43502== by 0xA1C2227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43502== by 0x11F78E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43502== by 0x11A553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43502== by 0x11C978: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43502== by 0x11C873: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43502== by 0x11CE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43502== by 0x118D55: main (TestAbstractContractionCellFactory.cpp:18) +==43502== +==43502== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43502== at 0xA8DFA1C: __open_nocancel (open64_nocancel.c:39) +==43502== by 0xA863BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43502== by 0xA1FC822: ??? +==43502== by 0xA1FC96F: ??? +==43502== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43502== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43502== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43502== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43502== by 0xBE54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43502== by 0xBDEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43502== by 0xAAE4D38: PetscInitialize (pinit.c:924) +==43502== by 0xA1C21D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43502== by 0xA1C2227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43502== by 0x11F78E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43502== by 0x11A553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43502== by 0x11C978: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43502== by 0x11C873: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43502== by 0x11CE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43502== by 0x118D55: main (TestAbstractContractionCellFactory.cpp:18) +==43502== +==43502== Open file descriptor 116: +==43502== +==43502== +==43502== Open file descriptor 113: +==43502== +==43502== +==43502== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractContractionCellFactory_valgrind.txt +==43502== +==43502== +==43502== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43502== +==43502== +==43502== +==43502== HEAP SUMMARY: +==43502== in use at exit: 618,830 bytes in 8,248 blocks +==43502== total heap usage: 171,932 allocs, 163,684 frees, 1,363,064,354 bytes allocated +==43502== +==43502== LEAK SUMMARY: +==43502== definitely lost: 0 bytes in 0 blocks +==43502== indirectly lost: 0 bytes in 0 blocks +==43502== possibly lost: 0 bytes in 0 blocks +==43502== still reachable: 24 bytes in 2 blocks +==43502== suppressed: 618,806 bytes in 8,246 blocks +==43502== Reachable blocks (those to which a pointer was found) are not shown. +==43502== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43502== +==43502== For lists of detected and suppressed errors, rerun with: -s +==43502== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2024-10-14_17-51-53/TestAbstractCvodeSystem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAbstractCvodeSystem_valgrind.txt new file mode 100644 index 000000000..79101f6ab --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAbstractCvodeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24900== Memcheck, a memory error detector +==24900== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24900== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24900== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractCvodeSystem -malloc_debug -malloc_dump -memory_info +==24900== Parent PID: 23966 +==24900== +==24900== +==24900== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24900== Open file descriptor 12: +==24900== at 0x643E07D: pipe (pipe.c:29) +==24900== by 0xB1D207D: ??? +==24900== by 0x8CC44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24900== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24900== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24900== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24900== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24900== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24900== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24900== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24900== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24900== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24900== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24900== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) +==24900== +==24900== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24900== at 0x6442A1C: __open_nocancel (open64_nocancel.c:39) +==24900== by 0x63C6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24900== by 0x4B76822: ??? +==24900== by 0x4B7696F: ??? +==24900== by 0x8D696DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24900== by 0x8D69938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24900== by 0x8D1F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24900== by 0x8CC42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24900== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24900== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24900== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24900== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24900== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24900== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24900== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24900== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24900== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24900== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24900== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) +==24900== +==24900== Open file descriptor 116: +==24900== +==24900== +==24900== Open file descriptor 113: +==24900== +==24900== +==24900== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractCvodeSystem_valgrind.txt +==24900== +==24900== +==24900== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24900== +==24900== +==24900== +==24900== HEAP SUMMARY: +==24900== in use at exit: 617,918 bytes in 8,238 blocks +==24900== total heap usage: 46,486 allocs, 38,248 frees, 1,338,366,017 bytes allocated +==24900== +==24900== LEAK SUMMARY: +==24900== definitely lost: 0 bytes in 0 blocks +==24900== indirectly lost: 0 bytes in 0 blocks +==24900== possibly lost: 0 bytes in 0 blocks +==24900== still reachable: 24 bytes in 2 blocks +==24900== suppressed: 617,894 bytes in 8,236 blocks +==24900== Reachable blocks (those to which a pointer was found) are not shown. +==24900== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24900== +==24900== For lists of detected and suppressed errors, rerun with: -s +==24900== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestAbstractFeCableIntegralAssembler_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAbstractFeCableIntegralAssembler_valgrind.txt new file mode 100644 index 000000000..0b9b7dd8a --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAbstractFeCableIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25114== Memcheck, a memory error detector +==25114== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25114== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25114== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeCableIntegralAssembler -malloc_debug -malloc_dump -memory_info +==25114== Parent PID: 23966 +==25114== +==25114== +==25114== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25114== Open file descriptor 12: +==25114== at 0x84EF07D: pipe (pipe.c:29) +==25114== by 0x104E607D: ??? +==25114== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25114== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25114== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25114== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25114== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25114== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25114== by 0x136062: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25114== by 0x130C2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25114== by 0x133CD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25114== by 0x133B72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25114== by 0x134209: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25114== by 0x12F055: main (TestAbstractFeCableIntegralAssembler.cpp:19) +==25114== +==25114== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25114== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25114== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25114== by 0x7D43822: ??? +==25114== by 0x7D4396F: ??? +==25114== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25114== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25114== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25114== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25114== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25114== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25114== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25114== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25114== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25114== by 0x136062: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25114== by 0x130C2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25114== by 0x133CD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25114== by 0x133B72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25114== by 0x134209: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25114== by 0x12F055: main (TestAbstractFeCableIntegralAssembler.cpp:19) +==25114== +==25114== Open file descriptor 116: +==25114== +==25114== +==25114== Open file descriptor 113: +==25114== +==25114== +==25114== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeCableIntegralAssembler_valgrind.txt +==25114== +==25114== +==25114== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25114== +==25114== +==25114== +==25114== HEAP SUMMARY: +==25114== in use at exit: 618,270 bytes in 8,238 blocks +==25114== total heap usage: 59,954 allocs, 51,716 frees, 1,339,372,550 bytes allocated +==25114== +==25114== LEAK SUMMARY: +==25114== definitely lost: 0 bytes in 0 blocks +==25114== indirectly lost: 0 bytes in 0 blocks +==25114== possibly lost: 0 bytes in 0 blocks +==25114== still reachable: 24 bytes in 2 blocks +==25114== suppressed: 618,246 bytes in 8,236 blocks +==25114== Reachable blocks (those to which a pointer was found) are not shown. +==25114== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25114== +==25114== For lists of detected and suppressed errors, rerun with: -s +==25114== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt new file mode 100644 index 000000000..f6c7a66d7 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25127== Memcheck, a memory error detector +==25127== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25127== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25127== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeSurfaceIntegralAssembler -malloc_debug -malloc_dump -memory_info +==25127== Parent PID: 23966 +==25127== +==25127== +==25127== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25127== Open file descriptor 12: +==25127== at 0x84EF07D: pipe (pipe.c:29) +==25127== by 0x104E607D: ??? +==25127== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25127== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25127== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25127== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25127== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25127== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25127== by 0x12D738: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25127== by 0x128933: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25127== by 0x12B4AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25127== by 0x12B3A5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25127== by 0x12B9B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25127== by 0x127135: main (TestAbstractFeSurfaceIntegralAssembler.cpp:18) +==25127== +==25127== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25127== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25127== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25127== by 0x7D43822: ??? +==25127== by 0x7D4396F: ??? +==25127== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25127== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25127== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25127== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25127== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25127== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25127== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25127== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25127== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25127== by 0x12D738: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25127== by 0x128933: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25127== by 0x12B4AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25127== by 0x12B3A5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25127== by 0x12B9B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25127== by 0x127135: main (TestAbstractFeSurfaceIntegralAssembler.cpp:18) +==25127== +==25127== Open file descriptor 116: +==25127== +==25127== +==25127== Open file descriptor 113: +==25127== +==25127== +==25127== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt +==25127== +==25127== +==25127== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25127== +==25127== +==25127== +==25127== HEAP SUMMARY: +==25127== in use at exit: 618,270 bytes in 8,238 blocks +==25127== total heap usage: 47,968 allocs, 39,730 frees, 1,338,473,418 bytes allocated +==25127== +==25127== LEAK SUMMARY: +==25127== definitely lost: 0 bytes in 0 blocks +==25127== indirectly lost: 0 bytes in 0 blocks +==25127== possibly lost: 0 bytes in 0 blocks +==25127== still reachable: 24 bytes in 2 blocks +==25127== suppressed: 618,246 bytes in 8,236 blocks +==25127== Reachable blocks (those to which a pointer was found) are not shown. +==25127== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25127== +==25127== For lists of detected and suppressed errors, rerun with: -s +==25127== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestAbstractFeVolumeIntegralAssembler_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAbstractFeVolumeIntegralAssembler_valgrind.txt new file mode 100644 index 000000000..f10dd1c64 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAbstractFeVolumeIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25128== Memcheck, a memory error detector +==25128== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25128== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25128== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeVolumeIntegralAssembler -malloc_debug -malloc_dump -memory_info +==25128== Parent PID: 23966 +==25128== +==25128== +==25128== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25128== Open file descriptor 12: +==25128== at 0x84EF07D: pipe (pipe.c:29) +==25128== by 0x104E607D: ??? +==25128== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25128== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25128== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25128== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25128== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25128== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25128== by 0x15E73C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25128== by 0x15920D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25128== by 0x15C3AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25128== by 0x15C24C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25128== by 0x15C8E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25128== by 0x157635: main (TestAbstractFeVolumeIntegralAssembler.cpp:19) +==25128== +==25128== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25128== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25128== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25128== by 0x7D43822: ??? +==25128== by 0x7D4396F: ??? +==25128== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25128== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25128== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25128== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25128== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25128== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25128== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25128== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25128== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25128== by 0x15E73C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25128== by 0x15920D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25128== by 0x15C3AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25128== by 0x15C24C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25128== by 0x15C8E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25128== by 0x157635: main (TestAbstractFeVolumeIntegralAssembler.cpp:19) +==25128== +==25128== Open file descriptor 116: +==25128== +==25128== +==25128== Open file descriptor 113: +==25128== +==25128== +==25128== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeVolumeIntegralAssembler_valgrind.txt +==25128== +==25128== +==25128== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25128== +==25128== +==25128== +==25128== HEAP SUMMARY: +==25128== in use at exit: 618,270 bytes in 8,238 blocks +==25128== total heap usage: 57,062 allocs, 48,824 frees, 1,339,698,538 bytes allocated +==25128== +==25128== LEAK SUMMARY: +==25128== definitely lost: 0 bytes in 0 blocks +==25128== indirectly lost: 0 bytes in 0 blocks +==25128== possibly lost: 0 bytes in 0 blocks +==25128== still reachable: 24 bytes in 2 blocks +==25128== suppressed: 618,246 bytes in 8,236 blocks +==25128== Reachable blocks (those to which a pointer was found) are not shown. +==25128== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25128== +==25128== For lists of detected and suppressed errors, rerun with: -s +==25128== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestAbstractFunctionalCalculator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAbstractFunctionalCalculator_valgrind.txt new file mode 100644 index 000000000..a5510360f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAbstractFunctionalCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==25135== Memcheck, a memory error detector +==25135== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25135== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25135== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFunctionalCalculator -malloc_debug -malloc_dump -memory_info +==25135== Parent PID: 23966 +==25135== +==25135== +==25135== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25135== Open file descriptor 12: +==25135== at 0x859707D: pipe (pipe.c:29) +==25135== by 0x104E607D: ??? +==25135== by 0xBE1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25135== by 0x7DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25135== by 0x7D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25135== by 0x6A25D38: PetscInitialize (pinit.c:924) +==25135== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25135== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25135== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25135== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25135== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25135== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25135== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25135== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) +==25135== +==25135== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25135== at 0x859BA1C: __open_nocancel (open64_nocancel.c:39) +==25135== by 0x851FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25135== by 0x7CB4822: ??? +==25135== by 0x7CB496F: ??? +==25135== by 0xBEBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25135== by 0xBEBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25135== by 0xBE75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25135== by 0xBE1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25135== by 0x7DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25135== by 0x7D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25135== by 0x6A25D38: PetscInitialize (pinit.c:924) +==25135== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25135== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25135== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25135== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25135== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25135== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25135== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25135== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) +==25135== +==25135== Open file descriptor 116: +==25135== +==25135== +==25135== Open file descriptor 113: +==25135== +==25135== +==25135== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFunctionalCalculator_valgrind.txt +==25135== +==25135== +==25135== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25135== +==25135== +==25135== +==25135== HEAP SUMMARY: +==25135== in use at exit: 618,270 bytes in 8,238 blocks +==25135== total heap usage: 89,961 allocs, 81,723 frees, 1,340,571,501 bytes allocated +==25135== +==25135== LEAK SUMMARY: +==25135== definitely lost: 0 bytes in 0 blocks +==25135== indirectly lost: 0 bytes in 0 blocks +==25135== possibly lost: 0 bytes in 0 blocks +==25135== still reachable: 24 bytes in 2 blocks +==25135== suppressed: 618,246 bytes in 8,236 blocks +==25135== Reachable blocks (those to which a pointer was found) are not shown. +==25135== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25135== +==25135== For lists of detected and suppressed errors, rerun with: -s +==25135== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestAbstractIvpOdeSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAbstractIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..7c6bf375b --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAbstractIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24885== Memcheck, a memory error detector +==24885== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24885== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24885== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24885== Parent PID: 23966 +==24885== +==24885== +==24885== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24885== Open file descriptor 12: +==24885== at 0x503907D: pipe (pipe.c:29) +==24885== by 0xB1EE07D: ??? +==24885== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24885== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24885== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24885== by 0x5308D38: PetscInitialize (pinit.c:924) +==24885== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24885== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24885== by 0x13ABB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24885== by 0x13250D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24885== by 0x13549A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24885== by 0x13533A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24885== by 0x1359D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24885== by 0x12FAD5: main (TestAbstractIvpOdeSolver.cpp:19) +==24885== +==24885== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24885== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24885== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24885== by 0x4B76822: ??? +==24885== by 0x4B7696F: ??? +==24885== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24885== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24885== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24885== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24885== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24885== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24885== by 0x5308D38: PetscInitialize (pinit.c:924) +==24885== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24885== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24885== by 0x13ABB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24885== by 0x13250D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24885== by 0x13549A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24885== by 0x13533A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24885== by 0x1359D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24885== by 0x12FAD5: main (TestAbstractIvpOdeSolver.cpp:19) +==24885== +==24885== Open file descriptor 116: +==24885== +==24885== +==24885== Open file descriptor 113: +==24885== +==24885== +==24885== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractIvpOdeSolver_valgrind.txt +==24885== +==24885== +==24885== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24885== +==24885== +==24885== +==24885== HEAP SUMMARY: +==24885== in use at exit: 617,934 bytes in 8,238 blocks +==24885== total heap usage: 138,422 allocs, 130,184 frees, 1,346,068,959 bytes allocated +==24885== +==24885== LEAK SUMMARY: +==24885== definitely lost: 0 bytes in 0 blocks +==24885== indirectly lost: 0 bytes in 0 blocks +==24885== possibly lost: 0 bytes in 0 blocks +==24885== still reachable: 24 bytes in 2 blocks +==24885== suppressed: 617,910 bytes in 8,236 blocks +==24885== Reachable blocks (those to which a pointer was found) are not shown. +==24885== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24885== +==24885== For lists of detected and suppressed errors, rerun with: -s +==24885== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestAbstractOdeSystem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAbstractOdeSystem_valgrind.txt new file mode 100644 index 000000000..afb9744c5 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAbstractOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24906== Memcheck, a memory error detector +==24906== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24906== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24906== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractOdeSystem -malloc_debug -malloc_dump -memory_info +==24906== Parent PID: 23966 +==24906== +==24906== +==24906== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24906== Open file descriptor 12: +==24906== at 0x640707D: pipe (pipe.c:29) +==24906== by 0xB1EC07D: ??? +==24906== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24906== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24906== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24906== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24906== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24906== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24906== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24906== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24906== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24906== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24906== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24906== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) +==24906== +==24906== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24906== at 0x640BA1C: __open_nocancel (open64_nocancel.c:39) +==24906== by 0x638FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24906== by 0x4B76822: ??? +==24906== by 0x4B7696F: ??? +==24906== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24906== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24906== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24906== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24906== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24906== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24906== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24906== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24906== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24906== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24906== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24906== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24906== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24906== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24906== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) +==24906== +==24906== Open file descriptor 116: +==24906== +==24906== +==24906== Open file descriptor 113: +==24906== +==24906== +==24906== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractOdeSystem_valgrind.txt +==24906== +==24906== +==24906== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24906== +==24906== +==24906== +==24906== HEAP SUMMARY: +==24906== in use at exit: 617,934 bytes in 8,238 blocks +==24906== total heap usage: 45,969 allocs, 37,731 frees, 1,338,333,485 bytes allocated +==24906== +==24906== LEAK SUMMARY: +==24906== definitely lost: 0 bytes in 0 blocks +==24906== indirectly lost: 0 bytes in 0 blocks +==24906== possibly lost: 0 bytes in 0 blocks +==24906== still reachable: 24 bytes in 2 blocks +==24906== suppressed: 617,910 bytes in 8,236 blocks +==24906== Reachable blocks (those to which a pointer was found) are not shown. +==24906== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24906== +==24906== For lists of detected and suppressed errors, rerun with: -s +==24906== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-10-14_17-51-53/TestAbstractPurkinjeCellFactory_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAbstractPurkinjeCellFactory_valgrind.txt new file mode 100644 index 000000000..53af4bcf3 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAbstractPurkinjeCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==43520== Memcheck, a memory error detector +==43520== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43520== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43520== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestAbstractPurkinjeCellFactory -malloc_debug -malloc_dump -memory_info +==43520== Parent PID: 23966 +==43520== +==43520== +==43520== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43520== Open file descriptor 12: +==43520== at 0xA51707D: pipe (pipe.c:29) +==43520== by 0x1433707D: ??? +==43520== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43520== by 0xBC12418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43520== by 0xBBABD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43520== by 0xA8A2D38: PetscInitialize (pinit.c:924) +==43520== by 0x9E001D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43520== by 0x9E00227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43520== by 0x11B060: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43520== by 0x11664D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43520== by 0x118D6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43520== by 0x118C0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43520== by 0x1192A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43520== by 0x114A75: main (TestAbstractPurkinjeCellFactory.cpp:19) +==43520== +==43520== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43520== at 0xA51BA1C: __open_nocancel (open64_nocancel.c:39) +==43520== by 0xA49FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43520== by 0x9E3A822: ??? +==43520== by 0x9E3A96F: ??? +==43520== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43520== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43520== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43520== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43520== by 0xBC12418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43520== by 0xBBABD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43520== by 0xA8A2D38: PetscInitialize (pinit.c:924) +==43520== by 0x9E001D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43520== by 0x9E00227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43520== by 0x11B060: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43520== by 0x11664D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43520== by 0x118D6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43520== by 0x118C0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43520== by 0x1192A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43520== by 0x114A75: main (TestAbstractPurkinjeCellFactory.cpp:19) +==43520== +==43520== Open file descriptor 116: +==43520== +==43520== +==43520== Open file descriptor 113: +==43520== +==43520== +==43520== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractPurkinjeCellFactory_valgrind.txt +==43520== +==43520== +==43520== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43520== +==43520== +==43520== +==43520== HEAP SUMMARY: +==43520== in use at exit: 618,350 bytes in 8,238 blocks +==43520== total heap usage: 60,035 allocs, 51,797 frees, 1,339,348,034 bytes allocated +==43520== +==43520== LEAK SUMMARY: +==43520== definitely lost: 0 bytes in 0 blocks +==43520== indirectly lost: 0 bytes in 0 blocks +==43520== possibly lost: 0 bytes in 0 blocks +==43520== still reachable: 24 bytes in 2 blocks +==43520== suppressed: 618,326 bytes in 8,236 blocks +==43520== Reachable blocks (those to which a pointer was found) are not shown. +==43520== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43520== +==43520== For lists of detected and suppressed errors, rerun with: -s +==43520== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestAcinarUnitModels_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAcinarUnitModels_valgrind.txt new file mode 100644 index 000000000..732eba972 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAcinarUnitModels_valgrind.txt @@ -0,0 +1,36 @@ +==41050== Memcheck, a memory error detector +==41050== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41050== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41050== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAcinarUnitModels -malloc_debug -malloc_dump -memory_info +==41050== Parent PID: 23966 +==41050== +==41050== +==41050== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41050== Open file descriptor 116: +==41050== +==41050== +==41050== Open file descriptor 113: +==41050== +==41050== +==41050== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAcinarUnitModels_valgrind.txt +==41050== +==41050== +==41050== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41050== +==41050== +==41050== +==41050== HEAP SUMMARY: +==41050== in use at exit: 24 bytes in 2 blocks +==41050== total heap usage: 56,753 allocs, 56,751 frees, 1,351,562 bytes allocated +==41050== +==41050== LEAK SUMMARY: +==41050== definitely lost: 0 bytes in 0 blocks +==41050== indirectly lost: 0 bytes in 0 blocks +==41050== possibly lost: 0 bytes in 0 blocks +==41050== still reachable: 24 bytes in 2 blocks +==41050== suppressed: 0 bytes in 0 blocks +==41050== Reachable blocks (those to which a pointer was found) are not shown. +==41050== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41050== +==41050== For lists of detected and suppressed errors, rerun with: -s +==41050== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-10-14_17-51-53/TestAirwayBranch_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAirwayBranch_valgrind.txt new file mode 100644 index 000000000..e976f7090 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAirwayBranch_valgrind.txt @@ -0,0 +1,36 @@ +==40972== Memcheck, a memory error detector +==40972== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40972== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40972== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayBranch -malloc_debug -malloc_dump -memory_info +==40972== Parent PID: 23966 +==40972== +==40972== +==40972== FILE DESCRIPTORS: 7 open (3 std) at exit. +==40972== Open file descriptor 116: +==40972== +==40972== +==40972== Open file descriptor 113: +==40972== +==40972== +==40972== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayBranch_valgrind.txt +==40972== +==40972== +==40972== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40972== +==40972== +==40972== +==40972== HEAP SUMMARY: +==40972== in use at exit: 24 bytes in 2 blocks +==40972== total heap usage: 7,276 allocs, 7,274 frees, 1,027,073 bytes allocated +==40972== +==40972== LEAK SUMMARY: +==40972== definitely lost: 0 bytes in 0 blocks +==40972== indirectly lost: 0 bytes in 0 blocks +==40972== possibly lost: 0 bytes in 0 blocks +==40972== still reachable: 24 bytes in 2 blocks +==40972== suppressed: 0 bytes in 0 blocks +==40972== Reachable blocks (those to which a pointer was found) are not shown. +==40972== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40972== +==40972== For lists of detected and suppressed errors, rerun with: -s +==40972== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-10-14_17-51-53/TestAirwayGeneration_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAirwayGeneration_valgrind.txt new file mode 100644 index 000000000..b2cbf0199 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAirwayGeneration_valgrind.txt @@ -0,0 +1,36 @@ +==41014== Memcheck, a memory error detector +==41014== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41014== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41014== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayGeneration -malloc_debug -malloc_dump -memory_info +==41014== Parent PID: 23966 +==41014== +==41014== +==41014== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41014== Open file descriptor 116: +==41014== +==41014== +==41014== Open file descriptor 113: +==41014== +==41014== +==41014== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayGeneration_valgrind.txt +==41014== +==41014== +==41014== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41014== +==41014== +==41014== +==41014== HEAP SUMMARY: +==41014== in use at exit: 24 bytes in 2 blocks +==41014== total heap usage: 7,378 allocs, 7,376 frees, 939,180 bytes allocated +==41014== +==41014== LEAK SUMMARY: +==41014== definitely lost: 0 bytes in 0 blocks +==41014== indirectly lost: 0 bytes in 0 blocks +==41014== possibly lost: 0 bytes in 0 blocks +==41014== still reachable: 24 bytes in 2 blocks +==41014== suppressed: 0 bytes in 0 blocks +==41014== Reachable blocks (those to which a pointer was found) are not shown. +==41014== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41014== +==41014== For lists of detected and suppressed errors, rerun with: -s +==41014== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-10-14_17-51-53/TestAirwayGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAirwayGenerator_valgrind.txt new file mode 100644 index 000000000..c8a571dca --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAirwayGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==41015== Memcheck, a memory error detector +==41015== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41015== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41015== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayGenerator -malloc_debug -malloc_dump -memory_info +==41015== Parent PID: 23966 +==41015== +==41015== +==41015== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41015== Open file descriptor 12: +==41015== at 0x6BD107D: pipe (pipe.c:29) +==41015== by 0x107B407D: ??? +==41015== by 0xBAD14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41015== by 0x5ED6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41015== by 0x5E6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41015== by 0x4B43D38: PetscInitialize (pinit.c:924) +==41015== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41015== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41015== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41015== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41015== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41015== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41015== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41015== by 0x111D35: main (TestAirwayGenerator.cpp:19) +==41015== +==41015== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41015== at 0x6BD5A1C: __open_nocancel (open64_nocancel.c:39) +==41015== by 0x6B59BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41015== by 0x5DD2822: ??? +==41015== by 0x5DD296F: ??? +==41015== by 0xBB766DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41015== by 0xBB76938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41015== by 0xBB2C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41015== by 0xBAD12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41015== by 0x5ED6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41015== by 0x5E6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41015== by 0x4B43D38: PetscInitialize (pinit.c:924) +==41015== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41015== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41015== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41015== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41015== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41015== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41015== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41015== by 0x111D35: main (TestAirwayGenerator.cpp:19) +==41015== +==41015== Open file descriptor 116: +==41015== +==41015== +==41015== Open file descriptor 113: +==41015== +==41015== +==41015== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayGenerator_valgrind.txt +==41015== +==41015== +==41015== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41015== +==41015== +==41015== +==41015== HEAP SUMMARY: +==41015== in use at exit: 618,334 bytes in 8,238 blocks +==41015== total heap usage: 627,252 allocs, 619,014 frees, 1,787,061,941 bytes allocated +==41015== +==41015== LEAK SUMMARY: +==41015== definitely lost: 0 bytes in 0 blocks +==41015== indirectly lost: 0 bytes in 0 blocks +==41015== possibly lost: 0 bytes in 0 blocks +==41015== still reachable: 24 bytes in 2 blocks +==41015== suppressed: 618,310 bytes in 8,236 blocks +==41015== Reachable blocks (those to which a pointer was found) are not shown. +==41015== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41015== +==41015== For lists of detected and suppressed errors, rerun with: -s +==41015== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestAirwayPropertiesCalculator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAirwayPropertiesCalculator_valgrind.txt new file mode 100644 index 000000000..078ec7020 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAirwayPropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==40973== Memcheck, a memory error detector +==40973== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40973== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40973== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayPropertiesCalculator -malloc_debug -malloc_dump -memory_info +==40973== Parent PID: 23966 +==40973== +==40973== +==40973== FILE DESCRIPTORS: 7 open (3 std) at exit. +==40973== Open file descriptor 116: +==40973== +==40973== +==40973== Open file descriptor 113: +==40973== +==40973== +==40973== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayPropertiesCalculator_valgrind.txt +==40973== +==40973== +==40973== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40973== +==40973== +==40973== +==40973== HEAP SUMMARY: +==40973== in use at exit: 24 bytes in 2 blocks +==40973== total heap usage: 6,941,070 allocs, 6,941,068 frees, 279,826,148 bytes allocated +==40973== +==40973== LEAK SUMMARY: +==40973== definitely lost: 0 bytes in 0 blocks +==40973== indirectly lost: 0 bytes in 0 blocks +==40973== possibly lost: 0 bytes in 0 blocks +==40973== still reachable: 24 bytes in 2 blocks +==40973== suppressed: 0 bytes in 0 blocks +==40973== Reachable blocks (those to which a pointer was found) are not shown. +==40973== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40973== +==40973== For lists of detected and suppressed errors, rerun with: -s +==40973== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-10-14_17-51-53/TestAirwayRemesher_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAirwayRemesher_valgrind.txt new file mode 100644 index 000000000..0599e7ff2 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAirwayRemesher_valgrind.txt @@ -0,0 +1,73 @@ +==41024== Memcheck, a memory error detector +==41024== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41024== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41024== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayRemesher -malloc_debug -malloc_dump -memory_info +==41024== Parent PID: 23966 +==41024== +==41024== +==41024== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41024== Open file descriptor 12: +==41024== at 0x823107D: pipe (pipe.c:29) +==41024== by 0x107B407D: ??? +==41024== by 0xBFD34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41024== by 0x7B39418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41024== by 0x7AD2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41024== by 0x67A6D38: PetscInitialize (pinit.c:924) +==41024== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41024== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41024== by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41024== by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41024== by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41024== by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41024== by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41024== by 0x114955: main (TestAirwayRemesher.cpp:18) +==41024== +==41024== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41024== at 0x8235A1C: __open_nocancel (open64_nocancel.c:39) +==41024== by 0x81B9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41024== by 0x7A35822: ??? +==41024== by 0x7A3596F: ??? +==41024== by 0xC0786DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41024== by 0xC078938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41024== by 0xC02E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41024== by 0xBFD32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41024== by 0x7B39418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41024== by 0x7AD2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41024== by 0x67A6D38: PetscInitialize (pinit.c:924) +==41024== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41024== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41024== by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41024== by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41024== by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41024== by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41024== by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41024== by 0x114955: main (TestAirwayRemesher.cpp:18) +==41024== +==41024== Open file descriptor 116: +==41024== +==41024== +==41024== Open file descriptor 113: +==41024== +==41024== +==41024== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayRemesher_valgrind.txt +==41024== +==41024== +==41024== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41024== +==41024== +==41024== +==41024== HEAP SUMMARY: +==41024== in use at exit: 618,263 bytes in 8,234 blocks +==41024== total heap usage: 11,597,066 allocs, 11,588,832 frees, 1,797,523,405 bytes allocated +==41024== +==41024== LEAK SUMMARY: +==41024== definitely lost: 0 bytes in 0 blocks +==41024== indirectly lost: 0 bytes in 0 blocks +==41024== possibly lost: 0 bytes in 0 blocks +==41024== still reachable: 24 bytes in 2 blocks +==41024== suppressed: 618,239 bytes in 8,232 blocks +==41024== Reachable blocks (those to which a pointer was found) are not shown. +==41024== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41024== +==41024== For lists of detected and suppressed errors, rerun with: -s +==41024== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-10-14_17-51-53/TestAirwayTreeWalker_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAirwayTreeWalker_valgrind.txt new file mode 100644 index 000000000..5612ed2b7 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAirwayTreeWalker_valgrind.txt @@ -0,0 +1,36 @@ +==40974== Memcheck, a memory error detector +==40974== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40974== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40974== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayTreeWalker -malloc_debug -malloc_dump -memory_info +==40974== Parent PID: 23966 +==40974== +==40974== +==40974== FILE DESCRIPTORS: 7 open (3 std) at exit. +==40974== Open file descriptor 116: +==40974== +==40974== +==40974== Open file descriptor 113: +==40974== +==40974== +==40974== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayTreeWalker_valgrind.txt +==40974== +==40974== +==40974== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40974== +==40974== +==40974== +==40974== HEAP SUMMARY: +==40974== in use at exit: 24 bytes in 2 blocks +==40974== total heap usage: 7,161 allocs, 7,159 frees, 1,017,852 bytes allocated +==40974== +==40974== LEAK SUMMARY: +==40974== definitely lost: 0 bytes in 0 blocks +==40974== indirectly lost: 0 bytes in 0 blocks +==40974== possibly lost: 0 bytes in 0 blocks +==40974== still reachable: 24 bytes in 2 blocks +==40974== suppressed: 0 bytes in 0 blocks +==40974== Reachable blocks (those to which a pointer was found) are not shown. +==40974== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40974== +==40974== For lists of detected and suppressed errors, rerun with: -s +==40974== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-10-14_17-51-53/TestAirwayWallModels_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAirwayWallModels_valgrind.txt new file mode 100644 index 000000000..ea6e4e92e --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAirwayWallModels_valgrind.txt @@ -0,0 +1,36 @@ +==41053== Memcheck, a memory error detector +==41053== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41053== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41053== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayWallModels -malloc_debug -malloc_dump -memory_info +==41053== Parent PID: 23966 +==41053== +==41053== +==41053== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41053== Open file descriptor 116: +==41053== +==41053== +==41053== Open file descriptor 113: +==41053== +==41053== +==41053== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayWallModels_valgrind.txt +==41053== +==41053== +==41053== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41053== +==41053== +==41053== +==41053== HEAP SUMMARY: +==41053== in use at exit: 24 bytes in 2 blocks +==41053== total heap usage: 7,221 allocs, 7,219 frees, 1,020,269 bytes allocated +==41053== +==41053== LEAK SUMMARY: +==41053== definitely lost: 0 bytes in 0 blocks +==41053== indirectly lost: 0 bytes in 0 blocks +==41053== possibly lost: 0 bytes in 0 blocks +==41053== still reachable: 24 bytes in 2 blocks +==41053== suppressed: 0 bytes in 0 blocks +==41053== Reachable blocks (those to which a pointer was found) are not shown. +==41053== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41053== +==41053== For lists of detected and suppressed errors, rerun with: -s +==41053== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-10-14_17-51-53/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt new file mode 100644 index 000000000..0ad412902 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25821== Memcheck, a memory error detector +==25821== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25821== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25821== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==25821== Parent PID: 23966 +==25821== +==25821== +==25821== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25821== Open file descriptor 12: +==25821== at 0xEF9407D: pipe (pipe.c:29) +==25821== by 0x196BD07D: ??? +==25821== by 0x13C594CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25821== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25821== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25821== by 0xD871D38: PetscInitialize (pinit.c:924) +==25821== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25821== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25821== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25821== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25821== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25821== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25821== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25821== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) +==25821== +==25821== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25821== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25821== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25821== by 0xD71D822: ??? +==25821== by 0xD71D96F: ??? +==25821== by 0x13CFE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25821== by 0x13CFE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25821== by 0x13CB4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25821== by 0x13C592DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25821== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25821== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25821== by 0xD871D38: PetscInitialize (pinit.c:924) +==25821== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25821== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25821== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25821== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25821== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25821== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25821== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25821== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) +==25821== +==25821== Open file descriptor 116: +==25821== +==25821== +==25821== Open file descriptor 113: +==25821== +==25821== +==25821== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt +==25821== +==25821== +==25821== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25821== +==25821== +==25821== +==25821== HEAP SUMMARY: +==25821== in use at exit: 618,334 bytes in 8,238 blocks +==25821== total heap usage: 166,109 allocs, 157,871 frees, 1,349,640,087 bytes allocated +==25821== +==25821== LEAK SUMMARY: +==25821== definitely lost: 0 bytes in 0 blocks +==25821== indirectly lost: 0 bytes in 0 blocks +==25821== possibly lost: 0 bytes in 0 blocks +==25821== still reachable: 24 bytes in 2 blocks +==25821== suppressed: 618,310 bytes in 8,236 blocks +==25821== Reachable blocks (those to which a pointer was found) are not shown. +==25821== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25821== +==25821== For lists of detected and suppressed errors, rerun with: -s +==25821== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestArchiveCell_valgrind.txt b/log-files/2024-10-14_17-51-53/TestArchiveCell_valgrind.txt new file mode 100644 index 000000000..b5ac2e424 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestArchiveCell_valgrind.txt @@ -0,0 +1,73 @@ +==25309== Memcheck, a memory error detector +==25309== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25309== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25309== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestArchiveCell -malloc_debug -malloc_dump -memory_info +==25309== Parent PID: 23966 +==25309== +==25309== +==25309== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25309== Open file descriptor 12: +==25309== at 0xED5007D: pipe (pipe.c:29) +==25309== by 0x196BD07D: ??? +==25309== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25309== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25309== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25309== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25309== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25309== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25309== by 0x1A4DB1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25309== by 0x19F1FF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25309== by 0x1A2140: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25309== by 0x1A203C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25309== by 0x1A264F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25309== by 0x19D9F5: main (TestArchiveCell.cpp:18) +==25309== +==25309== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25309== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25309== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25309== by 0xD4D9822: ??? +==25309== by 0xD4D996F: ??? +==25309== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25309== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25309== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25309== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25309== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25309== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25309== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25309== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25309== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25309== by 0x1A4DB1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25309== by 0x19F1FF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25309== by 0x1A2140: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25309== by 0x1A203C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25309== by 0x1A264F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25309== by 0x19D9F5: main (TestArchiveCell.cpp:18) +==25309== +==25309== Open file descriptor 116: +==25309== +==25309== +==25309== Open file descriptor 113: +==25309== +==25309== +==25309== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiveCell_valgrind.txt +==25309== +==25309== +==25309== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25309== +==25309== +==25309== +==25309== HEAP SUMMARY: +==25309== in use at exit: 618,430 bytes in 8,240 blocks +==25309== total heap usage: 53,934 allocs, 45,694 frees, 1,339,009,215 bytes allocated +==25309== +==25309== LEAK SUMMARY: +==25309== definitely lost: 0 bytes in 0 blocks +==25309== indirectly lost: 0 bytes in 0 blocks +==25309== possibly lost: 0 bytes in 0 blocks +==25309== still reachable: 120 bytes in 4 blocks +==25309== suppressed: 618,310 bytes in 8,236 blocks +==25309== Reachable blocks (those to which a pointer was found) are not shown. +==25309== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25309== +==25309== For lists of detected and suppressed errors, rerun with: -s +==25309== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestArchiveFormat_valgrind.txt b/log-files/2024-10-14_17-51-53/TestArchiveFormat_valgrind.txt new file mode 100644 index 000000000..f3cc4a5dc --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestArchiveFormat_valgrind.txt @@ -0,0 +1,73 @@ +==40469== Memcheck, a memory error detector +==40469== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40469== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40469== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestArchiveFormat -malloc_debug -malloc_dump -memory_info +==40469== Parent PID: 23966 +==40469== +==40469== +==40469== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40469== Open file descriptor 12: +==40469== at 0x125BA07D: pipe (pipe.c:29) +==40469== by 0x1B37E07D: ??? +==40469== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40469== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40469== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40469== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40469== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40469== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40469== by 0x1C0D5D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40469== by 0x1BBA9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40469== by 0x1BE6BA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40469== by 0x1BE5B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40469== by 0x1BEBC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40469== by 0x1BA295: main (TestArchiveFormat.cpp:18) +==40469== +==40469== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40469== at 0x125BEA1C: __open_nocancel (open64_nocancel.c:39) +==40469== by 0x12542BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40469== by 0x109FE822: ??? +==40469== by 0x109FE96F: ??? +==40469== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40469== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40469== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40469== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40469== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40469== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40469== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40469== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40469== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40469== by 0x1C0D5D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40469== by 0x1BBA9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40469== by 0x1BE6BA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40469== by 0x1BE5B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40469== by 0x1BEBC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40469== by 0x1BA295: main (TestArchiveFormat.cpp:18) +==40469== +==40469== Open file descriptor 116: +==40469== +==40469== +==40469== Open file descriptor 113: +==40469== +==40469== +==40469== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiveFormat_valgrind.txt +==40469== +==40469== +==40469== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40469== +==40469== +==40469== +==40469== HEAP SUMMARY: +==40469== in use at exit: 618,430 bytes in 8,239 blocks +==40469== total heap usage: 137,702 allocs, 129,463 frees, 1,345,410,164 bytes allocated +==40469== +==40469== LEAK SUMMARY: +==40469== definitely lost: 0 bytes in 0 blocks +==40469== indirectly lost: 0 bytes in 0 blocks +==40469== possibly lost: 0 bytes in 0 blocks +==40469== still reachable: 104 bytes in 3 blocks +==40469== suppressed: 618,326 bytes in 8,236 blocks +==40469== Reachable blocks (those to which a pointer was found) are not shown. +==40469== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40469== +==40469== For lists of detected and suppressed errors, rerun with: -s +==40469== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestArchivingExtendedBidomain_valgrind.txt b/log-files/2024-10-14_17-51-53/TestArchivingExtendedBidomain_valgrind.txt new file mode 100644 index 000000000..d33840055 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestArchivingExtendedBidomain_valgrind.txt @@ -0,0 +1,73 @@ +==41210== Memcheck, a memory error detector +==41210== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41210== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41210== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestArchivingExtendedBidomain -malloc_debug -malloc_dump -memory_info +==41210== Parent PID: 23966 +==41210== +==41210== +==41210== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41210== Open file descriptor 12: +==41210== at 0xBD5407D: pipe (pipe.c:29) +==41210== by 0x1433707D: ??? +==41210== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41210== by 0xB644418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41210== by 0xB5DDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41210== by 0xA2D4D38: PetscInitialize (pinit.c:924) +==41210== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41210== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41210== by 0x12EE9E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41210== by 0x129BF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41210== by 0x12CABA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41210== by 0x12C9B5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41210== by 0x12CFC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41210== by 0x1283A5: main (TestArchivingExtendedBidomain.cpp:18) +==41210== +==41210== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41210== at 0xBD58A1C: __open_nocancel (open64_nocancel.c:39) +==41210== by 0xBCDCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41210== by 0xA17E822: ??? +==41210== by 0xA17E96F: ??? +==41210== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41210== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41210== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41210== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41210== by 0xB644418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41210== by 0xB5DDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41210== by 0xA2D4D38: PetscInitialize (pinit.c:924) +==41210== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41210== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41210== by 0x12EE9E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41210== by 0x129BF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41210== by 0x12CABA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41210== by 0x12C9B5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41210== by 0x12CFC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41210== by 0x1283A5: main (TestArchivingExtendedBidomain.cpp:18) +==41210== +==41210== Open file descriptor 116: +==41210== +==41210== +==41210== Open file descriptor 113: +==41210== +==41210== +==41210== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchivingExtendedBidomain_valgrind.txt +==41210== +==41210== +==41210== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41210== +==41210== +==41210== +==41210== HEAP SUMMARY: +==41210== in use at exit: 618,759 bytes in 8,244 blocks +==41210== total heap usage: 352,178 allocs, 343,934 frees, 1,440,037,957 bytes allocated +==41210== +==41210== LEAK SUMMARY: +==41210== definitely lost: 0 bytes in 0 blocks +==41210== indirectly lost: 0 bytes in 0 blocks +==41210== possibly lost: 0 bytes in 0 blocks +==41210== still reachable: 24 bytes in 2 blocks +==41210== suppressed: 618,735 bytes in 8,242 blocks +==41210== Reachable blocks (those to which a pointer was found) are not shown. +==41210== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41210== +==41210== For lists of detected and suppressed errors, rerun with: -s +==41210== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 51 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestArchivingHelperClasses_valgrind.txt b/log-files/2024-10-14_17-51-53/TestArchivingHelperClasses_valgrind.txt new file mode 100644 index 000000000..edbf157dd --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestArchivingHelperClasses_valgrind.txt @@ -0,0 +1,73 @@ +==23967== Memcheck, a memory error detector +==23967== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23967== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23967== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestArchivingHelperClasses -malloc_debug -malloc_dump -memory_info +==23967== Parent PID: 23966 +==23967== +==23967== +==23967== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23967== Open file descriptor 12: +==23967== at 0x4CF607D: pipe (pipe.c:29) +==23967== by 0xAEAD07D: ??? +==23967== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23967== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23967== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23967== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23967== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23967== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23967== by 0x11F878: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23967== by 0x11ABDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23967== by 0x11D596: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23967== by 0x11D436: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23967== by 0x11DACD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23967== by 0x119005: main (TestArchivingHelperClasses.cpp:19) +==23967== +==23967== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23967== at 0x4CFAA1C: __open_nocancel (open64_nocancel.c:39) +==23967== by 0x4C7EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23967== by 0x4934822: ??? +==23967== by 0x493496F: ??? +==23967== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23967== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23967== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23967== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23967== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23967== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23967== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23967== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23967== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23967== by 0x11F878: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23967== by 0x11ABDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23967== by 0x11D596: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23967== by 0x11D436: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23967== by 0x11DACD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23967== by 0x119005: main (TestArchivingHelperClasses.cpp:19) +==23967== +==23967== Open file descriptor 116: +==23967== +==23967== +==23967== Open file descriptor 113: +==23967== +==23967== +==23967== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchivingHelperClasses_valgrind.txt +==23967== +==23967== +==23967== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23967== +==23967== +==23967== +==23967== HEAP SUMMARY: +==23967== in use at exit: 617,870 bytes in 8,238 blocks +==23967== total heap usage: 45,931 allocs, 37,693 frees, 1,338,445,162 bytes allocated +==23967== +==23967== LEAK SUMMARY: +==23967== definitely lost: 0 bytes in 0 blocks +==23967== indirectly lost: 0 bytes in 0 blocks +==23967== possibly lost: 0 bytes in 0 blocks +==23967== still reachable: 24 bytes in 2 blocks +==23967== suppressed: 617,846 bytes in 8,236 blocks +==23967== Reachable blocks (those to which a pointer was found) are not shown. +==23967== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23967== +==23967== For lists of detected and suppressed errors, rerun with: -s +==23967== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestArchiving_valgrind.txt b/log-files/2024-10-14_17-51-53/TestArchiving_valgrind.txt new file mode 100644 index 000000000..d13b88162 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestArchiving_valgrind.txt @@ -0,0 +1,73 @@ +==23968== Memcheck, a memory error detector +==23968== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23968== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23968== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestArchiving -malloc_debug -malloc_dump -memory_info +==23968== Parent PID: 23966 +==23968== +==23968== +==23968== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23968== Open file descriptor 12: +==23968== at 0x61AB07D: pipe (pipe.c:29) +==23968== by 0xAEAD07D: ??? +==23968== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23968== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23968== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23968== by 0x4A88D38: PetscInitialize (pinit.c:924) +==23968== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23968== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23968== by 0x12FB25: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23968== by 0x128E5F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23968== by 0x12CB36: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23968== by 0x12CA31: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23968== by 0x12D045: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23968== by 0x127655: main (TestArchiving.cpp:18) +==23968== +==23968== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23968== at 0x61AFA1C: __open_nocancel (open64_nocancel.c:39) +==23968== by 0x6133BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23968== by 0x4934822: ??? +==23968== by 0x493496F: ??? +==23968== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23968== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23968== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23968== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23968== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23968== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23968== by 0x4A88D38: PetscInitialize (pinit.c:924) +==23968== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23968== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23968== by 0x12FB25: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23968== by 0x128E5F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23968== by 0x12CB36: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23968== by 0x12CA31: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23968== by 0x12D045: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23968== by 0x127655: main (TestArchiving.cpp:18) +==23968== +==23968== Open file descriptor 116: +==23968== +==23968== +==23968== Open file descriptor 113: +==23968== +==23968== +==23968== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiving_valgrind.txt +==23968== +==23968== +==23968== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23968== +==23968== +==23968== +==23968== HEAP SUMMARY: +==23968== in use at exit: 617,870 bytes in 8,238 blocks +==23968== total heap usage: 45,505 allocs, 37,267 frees, 1,338,352,384 bytes allocated +==23968== +==23968== LEAK SUMMARY: +==23968== definitely lost: 0 bytes in 0 blocks +==23968== indirectly lost: 0 bytes in 0 blocks +==23968== possibly lost: 0 bytes in 0 blocks +==23968== still reachable: 24 bytes in 2 blocks +==23968== suppressed: 617,846 bytes in 8,236 blocks +==23968== Reachable blocks (those to which a pointer was found) are not shown. +==23968== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23968== +==23968== For lists of detected and suppressed errors, rerun with: -s +==23968== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestBackwardEulerIvpOdeSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestBackwardEulerIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..1b0dfacb2 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestBackwardEulerIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24916== Memcheck, a memory error detector +==24916== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24916== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24916== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestBackwardEulerIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24916== Parent PID: 23966 +==24916== +==24916== +==24916== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24916== Open file descriptor 12: +==24916== at 0x503907D: pipe (pipe.c:29) +==24916== by 0xB1EE07D: ??? +==24916== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24916== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24916== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24916== by 0x5308D38: PetscInitialize (pinit.c:924) +==24916== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24916== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24916== by 0x125F28: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24916== by 0x120619: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24916== by 0x122DCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24916== by 0x122CCA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24916== by 0x1232DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24916== by 0x11DEE5: main (TestBackwardEulerIvpOdeSolver.cpp:18) +==24916== +==24916== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24916== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24916== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24916== by 0x4B76822: ??? +==24916== by 0x4B7696F: ??? +==24916== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24916== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24916== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24916== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24916== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24916== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24916== by 0x5308D38: PetscInitialize (pinit.c:924) +==24916== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24916== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24916== by 0x125F28: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24916== by 0x120619: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24916== by 0x122DCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24916== by 0x122CCA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24916== by 0x1232DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24916== by 0x11DEE5: main (TestBackwardEulerIvpOdeSolver.cpp:18) +==24916== +==24916== Open file descriptor 116: +==24916== +==24916== +==24916== Open file descriptor 113: +==24916== +==24916== +==24916== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBackwardEulerIvpOdeSolver_valgrind.txt +==24916== +==24916== +==24916== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24916== +==24916== +==24916== +==24916== HEAP SUMMARY: +==24916== in use at exit: 617,934 bytes in 8,238 blocks +==24916== total heap usage: 386,055 allocs, 377,817 frees, 1,344,036,734 bytes allocated +==24916== +==24916== LEAK SUMMARY: +==24916== definitely lost: 0 bytes in 0 blocks +==24916== indirectly lost: 0 bytes in 0 blocks +==24916== possibly lost: 0 bytes in 0 blocks +==24916== still reachable: 24 bytes in 2 blocks +==24916== suppressed: 617,910 bytes in 8,236 blocks +==24916== Reachable blocks (those to which a pointer was found) are not shown. +==24916== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24916== +==24916== For lists of detected and suppressed errors, rerun with: -s +==24916== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt b/log-files/2024-10-14_17-51-53/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt new file mode 100644 index 000000000..e9d7db2dd --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt @@ -0,0 +1,73 @@ +==41156== Memcheck, a memory error detector +==41156== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41156== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41156== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBenchmarkPreconditionersForMeshIndependence -malloc_debug -malloc_dump -memory_info +==41156== Parent PID: 23966 +==41156== +==41156== +==41156== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41156== Open file descriptor 12: +==41156== at 0xBCF707D: pipe (pipe.c:29) +==41156== by 0x1433707D: ??? +==41156== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41156== by 0xB4FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41156== by 0xB497D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41156== by 0xA16BD38: PetscInitialize (pinit.c:924) +==41156== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41156== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41156== by 0x11D9C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41156== by 0x1189AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41156== by 0x11B52E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41156== by 0x11B3CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41156== by 0x11BA65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41156== by 0x116DD5: main (TestBenchmarkPreconditionersForMeshIndependence.cpp:19) +==41156== +==41156== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41156== at 0xBCFBA1C: __open_nocancel (open64_nocancel.c:39) +==41156== by 0xBC7FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41156== by 0xB3FA822: ??? +==41156== by 0xB3FA96F: ??? +==41156== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41156== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41156== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41156== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41156== by 0xB4FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41156== by 0xB497D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41156== by 0xA16BD38: PetscInitialize (pinit.c:924) +==41156== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41156== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41156== by 0x11D9C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41156== by 0x1189AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41156== by 0x11B52E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41156== by 0x11B3CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41156== by 0x11BA65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41156== by 0x116DD5: main (TestBenchmarkPreconditionersForMeshIndependence.cpp:19) +==41156== +==41156== Open file descriptor 116: +==41156== +==41156== +==41156== Open file descriptor 113: +==41156== +==41156== +==41156== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt +==41156== +==41156== +==41156== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41156== +==41156== +==41156== +==41156== HEAP SUMMARY: +==41156== in use at exit: 618,775 bytes in 8,245 blocks +==41156== total heap usage: 466,121 allocs, 457,876 frees, 1,542,131,361 bytes allocated +==41156== +==41156== LEAK SUMMARY: +==41156== definitely lost: 0 bytes in 0 blocks +==41156== indirectly lost: 0 bytes in 0 blocks +==41156== possibly lost: 0 bytes in 0 blocks +==41156== still reachable: 40 bytes in 3 blocks +==41156== suppressed: 618,735 bytes in 8,242 blocks +==41156== Reachable blocks (those to which a pointer was found) are not shown. +==41156== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41156== +==41156== For lists of detected and suppressed errors, rerun with: -s +==41156== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 49 from 32) diff --git a/log-files/2024-10-14_17-51-53/TestBidomainDistributedMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestBidomainDistributedMesh_valgrind.txt new file mode 100644 index 000000000..6250c5eab --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestBidomainDistributedMesh_valgrind.txt @@ -0,0 +1,73 @@ +==41171== Memcheck, a memory error detector +==41171== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41171== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41171== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainDistributedMesh -malloc_debug -malloc_dump -memory_info +==41171== Parent PID: 23966 +==41171== +==41171== +==41171== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41171== Open file descriptor 12: +==41171== at 0xBC1007D: pipe (pipe.c:29) +==41171== by 0x1433707D: ??? +==41171== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41171== by 0xB4FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41171== by 0xB497D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41171== by 0xA16BD38: PetscInitialize (pinit.c:924) +==41171== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41171== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41171== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41171== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41171== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41171== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41171== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41171== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) +==41171== +==41171== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41171== at 0xBC14A1C: __open_nocancel (open64_nocancel.c:39) +==41171== by 0xBB98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41171== by 0xB3FA822: ??? +==41171== by 0xB3FA96F: ??? +==41171== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41171== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41171== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41171== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41171== by 0xB4FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41171== by 0xB497D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41171== by 0xA16BD38: PetscInitialize (pinit.c:924) +==41171== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41171== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41171== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41171== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41171== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41171== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41171== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41171== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) +==41171== +==41171== Open file descriptor 116: +==41171== +==41171== +==41171== Open file descriptor 113: +==41171== +==41171== +==41171== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainDistributedMesh_valgrind.txt +==41171== +==41171== +==41171== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41171== +==41171== +==41171== +==41171== HEAP SUMMARY: +==41171== in use at exit: 618,830 bytes in 8,248 blocks +==41171== total heap usage: 428,256 allocs, 420,008 frees, 1,437,394,291 bytes allocated +==41171== +==41171== LEAK SUMMARY: +==41171== definitely lost: 0 bytes in 0 blocks +==41171== indirectly lost: 0 bytes in 0 blocks +==41171== possibly lost: 0 bytes in 0 blocks +==41171== still reachable: 24 bytes in 2 blocks +==41171== suppressed: 618,806 bytes in 8,246 blocks +==41171== Reachable blocks (those to which a pointer was found) are not shown. +==41171== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41171== +==41171== For lists of detected and suppressed errors, rerun with: -s +==41171== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 55 from 38) diff --git a/log-files/2024-10-14_17-51-53/TestBidomainProblem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestBidomainProblem_valgrind.txt new file mode 100644 index 000000000..4614cdd55 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41180== Memcheck, a memory error detector +==41180== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41180== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41180== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainProblem -malloc_debug -malloc_dump -memory_info +==41180== Parent PID: 23966 +==41180== +==41180== +==41180== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41180== Open file descriptor 12: +==41180== at 0xC0F307D: pipe (pipe.c:29) +==41180== by 0x1433707D: ??? +==41180== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41180== by 0xB9E1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41180== by 0xB97AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41180== by 0xA671D38: PetscInitialize (pinit.c:924) +==41180== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41180== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41180== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41180== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41180== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41180== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41180== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41180== by 0x138285: main (TestBidomainProblem.cpp:19) +==41180== +==41180== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41180== at 0xC0F7A1C: __open_nocancel (open64_nocancel.c:39) +==41180== by 0xC07BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41180== by 0xA51B822: ??? +==41180== by 0xA51B96F: ??? +==41180== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41180== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41180== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41180== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41180== by 0xB9E1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41180== by 0xB97AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41180== by 0xA671D38: PetscInitialize (pinit.c:924) +==41180== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41180== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41180== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41180== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41180== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41180== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41180== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41180== by 0x138285: main (TestBidomainProblem.cpp:19) +==41180== +==41180== Open file descriptor 116: +==41180== +==41180== +==41180== Open file descriptor 113: +==41180== +==41180== +==41180== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainProblem_valgrind.txt +==41180== +==41180== +==41180== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41180== +==41180== +==41180== +==41180== HEAP SUMMARY: +==41180== in use at exit: 618,830 bytes in 8,248 blocks +==41180== total heap usage: 584,919 allocs, 576,671 frees, 1,548,983,907 bytes allocated +==41180== +==41180== LEAK SUMMARY: +==41180== definitely lost: 0 bytes in 0 blocks +==41180== indirectly lost: 0 bytes in 0 blocks +==41180== possibly lost: 0 bytes in 0 blocks +==41180== still reachable: 24 bytes in 2 blocks +==41180== suppressed: 618,806 bytes in 8,246 blocks +==41180== Reachable blocks (those to which a pointer was found) are not shown. +==41180== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41180== +==41180== For lists of detected and suppressed errors, rerun with: -s +==41180== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 103 from 38) diff --git a/log-files/2024-10-14_17-51-53/TestBidomainTissue_valgrind.txt b/log-files/2024-10-14_17-51-53/TestBidomainTissue_valgrind.txt new file mode 100644 index 000000000..033b55752 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestBidomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==41179== Memcheck, a memory error detector +==41179== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41179== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41179== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainTissue -malloc_debug -malloc_dump -memory_info +==41179== Parent PID: 23966 +==41179== +==41179== +==41179== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41179== Open file descriptor 12: +==41179== at 0xBBAA07D: pipe (pipe.c:29) +==41179== by 0x1433707D: ??? +==41179== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41179== by 0xBF27418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41179== by 0xBEC0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41179== by 0xA25FD38: PetscInitialize (pinit.c:924) +==41179== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41179== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41179== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41179== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41179== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41179== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41179== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41179== by 0x1326C5: main (TestBidomainTissue.cpp:18) +==41179== +==41179== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41179== at 0xBBAEA1C: __open_nocancel (open64_nocancel.c:39) +==41179== by 0xBB32BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41179== by 0xA10B822: ??? +==41179== by 0xA10B96F: ??? +==41179== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41179== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41179== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41179== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41179== by 0xBF27418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41179== by 0xBEC0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41179== by 0xA25FD38: PetscInitialize (pinit.c:924) +==41179== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41179== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41179== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41179== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41179== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41179== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41179== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41179== by 0x1326C5: main (TestBidomainTissue.cpp:18) +==41179== +==41179== Open file descriptor 116: +==41179== +==41179== +==41179== Open file descriptor 113: +==41179== +==41179== +==41179== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainTissue_valgrind.txt +==41179== +==41179== +==41179== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41179== +==41179== +==41179== +==41179== HEAP SUMMARY: +==41179== in use at exit: 618,350 bytes in 8,238 blocks +==41179== total heap usage: 192,059 allocs, 183,821 frees, 1,381,063,775 bytes allocated +==41179== +==41179== LEAK SUMMARY: +==41179== definitely lost: 0 bytes in 0 blocks +==41179== indirectly lost: 0 bytes in 0 blocks +==41179== possibly lost: 0 bytes in 0 blocks +==41179== still reachable: 24 bytes in 2 blocks +==41179== suppressed: 618,326 bytes in 8,236 blocks +==41179== Reachable blocks (those to which a pointer was found) are not shown. +==41179== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41179== +==41179== For lists of detected and suppressed errors, rerun with: -s +==41179== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestBidomainWithBathProblem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestBidomainWithBathProblem_valgrind.txt new file mode 100644 index 000000000..aad31229b --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestBidomainWithBathProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41181== Memcheck, a memory error detector +==41181== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41181== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41181== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainWithBathProblem -malloc_debug -malloc_dump -memory_info +==41181== Parent PID: 23966 +==41181== +==41181== +==41181== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41181== Open file descriptor 12: +==41181== at 0xAC6E07D: pipe (pipe.c:29) +==41181== by 0x1433707D: ??? +==41181== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41181== by 0xC369418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41181== by 0xC302D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41181== by 0xAFF9D38: PetscInitialize (pinit.c:924) +==41181== by 0xA46E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41181== by 0xA46E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41181== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41181== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41181== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41181== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41181== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41181== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) +==41181== +==41181== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41181== at 0xAC72A1C: __open_nocancel (open64_nocancel.c:39) +==41181== by 0xABF6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41181== by 0xA4A8822: ??? +==41181== by 0xA4A896F: ??? +==41181== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41181== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41181== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41181== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41181== by 0xC369418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41181== by 0xC302D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41181== by 0xAFF9D38: PetscInitialize (pinit.c:924) +==41181== by 0xA46E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41181== by 0xA46E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41181== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41181== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41181== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41181== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41181== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41181== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) +==41181== +==41181== Open file descriptor 116: +==41181== +==41181== +==41181== Open file descriptor 113: +==41181== +==41181== +==41181== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainWithBathProblem_valgrind.txt +==41181== +==41181== +==41181== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41181== +==41181== +==41181== +==41181== HEAP SUMMARY: +==41181== in use at exit: 618,759 bytes in 8,244 blocks +==41181== total heap usage: 1,394,278 allocs, 1,386,034 frees, 1,987,570,831 bytes allocated +==41181== +==41181== LEAK SUMMARY: +==41181== definitely lost: 0 bytes in 0 blocks +==41181== indirectly lost: 0 bytes in 0 blocks +==41181== possibly lost: 0 bytes in 0 blocks +==41181== still reachable: 24 bytes in 2 blocks +==41181== suppressed: 618,735 bytes in 8,242 blocks +==41181== Reachable blocks (those to which a pointer was found) are not shown. +==41181== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41181== +==41181== For lists of detected and suppressed errors, rerun with: -s +==41181== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 69 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestBidomainWithSvi_valgrind.txt b/log-files/2024-10-14_17-51-53/TestBidomainWithSvi_valgrind.txt new file mode 100644 index 000000000..8eb01d775 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestBidomainWithSvi_valgrind.txt @@ -0,0 +1,73 @@ +==41202== Memcheck, a memory error detector +==41202== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41202== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41202== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainWithSvi -malloc_debug -malloc_dump -memory_info +==41202== Parent PID: 23966 +==41202== +==41202== +==41202== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41202== Open file descriptor 12: +==41202== at 0xA7EA07D: pipe (pipe.c:29) +==41202== by 0x1433707D: ??? +==41202== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41202== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41202== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41202== by 0xAB73D38: PetscInitialize (pinit.c:924) +==41202== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41202== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41202== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41202== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41202== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41202== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41202== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41202== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) +==41202== +==41202== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41202== at 0xA7EEA1C: __open_nocancel (open64_nocancel.c:39) +==41202== by 0xA772BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41202== by 0xA10B822: ??? +==41202== by 0xA10B96F: ??? +==41202== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41202== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41202== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41202== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41202== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41202== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41202== by 0xAB73D38: PetscInitialize (pinit.c:924) +==41202== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41202== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41202== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41202== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41202== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41202== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41202== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41202== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) +==41202== +==41202== Open file descriptor 116: +==41202== +==41202== +==41202== Open file descriptor 113: +==41202== +==41202== +==41202== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainWithSvi_valgrind.txt +==41202== +==41202== +==41202== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41202== +==41202== +==41202== +==41202== HEAP SUMMARY: +==41202== in use at exit: 618,759 bytes in 8,244 blocks +==41202== total heap usage: 3,540,033 allocs, 3,531,789 frees, 2,046,652,187 bytes allocated +==41202== +==41202== LEAK SUMMARY: +==41202== definitely lost: 0 bytes in 0 blocks +==41202== indirectly lost: 0 bytes in 0 blocks +==41202== possibly lost: 0 bytes in 0 blocks +==41202== still reachable: 24 bytes in 2 blocks +==41202== suppressed: 618,735 bytes in 8,242 blocks +==41202== Reachable blocks (those to which a pointer was found) are not shown. +==41202== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41202== +==41202== For lists of detected and suppressed errors, rerun with: -s +==41202== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 72 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestBoundaryConditionsContainer_valgrind.txt b/log-files/2024-10-14_17-51-53/TestBoundaryConditionsContainer_valgrind.txt new file mode 100644 index 000000000..9b9a455c1 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestBoundaryConditionsContainer_valgrind.txt @@ -0,0 +1,73 @@ +==25142== Memcheck, a memory error detector +==25142== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25142== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25142== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestBoundaryConditionsContainer -malloc_debug -malloc_dump -memory_info +==25142== Parent PID: 23966 +==25142== +==25142== +==25142== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25142== Open file descriptor 12: +==25142== at 0x844A07D: pipe (pipe.c:29) +==25142== by 0x104E607D: ??? +==25142== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25142== by 0x8A6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25142== by 0x8A06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25142== by 0x6B19D38: PetscInitialize (pinit.c:924) +==25142== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25142== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25142== by 0x13D842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25142== by 0x13868F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25142== by 0x13B1AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25142== by 0x13B0A6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25142== by 0x13B6B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25142== by 0x136E85: main (TestBoundaryConditionsContainer.cpp:18) +==25142== +==25142== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25142== at 0x844EA1C: __open_nocancel (open64_nocancel.c:39) +==25142== by 0x83D2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25142== by 0x69C5822: ??? +==25142== by 0x69C596F: ??? +==25142== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25142== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25142== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25142== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25142== by 0x8A6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25142== by 0x8A06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25142== by 0x6B19D38: PetscInitialize (pinit.c:924) +==25142== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25142== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25142== by 0x13D842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25142== by 0x13868F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25142== by 0x13B1AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25142== by 0x13B0A6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25142== by 0x13B6B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25142== by 0x136E85: main (TestBoundaryConditionsContainer.cpp:18) +==25142== +==25142== Open file descriptor 116: +==25142== +==25142== +==25142== Open file descriptor 113: +==25142== +==25142== +==25142== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBoundaryConditionsContainer_valgrind.txt +==25142== +==25142== +==25142== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25142== +==25142== +==25142== +==25142== HEAP SUMMARY: +==25142== in use at exit: 618,270 bytes in 8,238 blocks +==25142== total heap usage: 54,304 allocs, 46,066 frees, 1,340,402,881 bytes allocated +==25142== +==25142== LEAK SUMMARY: +==25142== definitely lost: 0 bytes in 0 blocks +==25142== indirectly lost: 0 bytes in 0 blocks +==25142== possibly lost: 0 bytes in 0 blocks +==25142== still reachable: 24 bytes in 2 blocks +==25142== suppressed: 618,246 bytes in 8,236 blocks +==25142== Reachable blocks (those to which a pointer was found) are not shown. +==25142== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25142== +==25142== For lists of detected and suppressed errors, rerun with: -s +==25142== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestBuskeForces_valgrind.txt b/log-files/2024-10-14_17-51-53/TestBuskeForces_valgrind.txt new file mode 100644 index 000000000..ea2f54d3d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestBuskeForces_valgrind.txt @@ -0,0 +1,73 @@ +==25861== Memcheck, a memory error detector +==25861== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25861== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25861== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestBuskeForces -malloc_debug -malloc_dump -memory_info +==25861== Parent PID: 23966 +==25861== +==25861== +==25861== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25861== Open file descriptor 12: +==25861== at 0xF92C07D: pipe (pipe.c:29) +==25861== by 0x196BC07D: ??? +==25861== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25861== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25861== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25861== by 0x10218D38: PetscInitialize (pinit.c:924) +==25861== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25861== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25861== by 0x1373C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25861== by 0x1302A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25861== by 0x132EDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25861== by 0x132DD7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25861== by 0x1333EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25861== by 0x12EAA5: main (TestBuskeForces.cpp:18) +==25861== +==25861== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25861== at 0xF930A1C: __open_nocancel (open64_nocancel.c:39) +==25861== by 0xF8B4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25861== by 0xF13E822: ??? +==25861== by 0xF13E96F: ??? +==25861== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25861== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25861== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25861== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25861== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25861== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25861== by 0x10218D38: PetscInitialize (pinit.c:924) +==25861== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25861== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25861== by 0x1373C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25861== by 0x1302A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25861== by 0x132EDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25861== by 0x132DD7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25861== by 0x1333EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25861== by 0x12EAA5: main (TestBuskeForces.cpp:18) +==25861== +==25861== Open file descriptor 116: +==25861== +==25861== +==25861== Open file descriptor 113: +==25861== +==25861== +==25861== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBuskeForces_valgrind.txt +==25861== +==25861== +==25861== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25861== +==25861== +==25861== +==25861== HEAP SUMMARY: +==25861== in use at exit: 618,366 bytes in 8,239 blocks +==25861== total heap usage: 56,077 allocs, 47,838 frees, 1,339,842,097 bytes allocated +==25861== +==25861== LEAK SUMMARY: +==25861== definitely lost: 0 bytes in 0 blocks +==25861== indirectly lost: 0 bytes in 0 blocks +==25861== possibly lost: 0 bytes in 0 blocks +==25861== still reachable: 56 bytes in 3 blocks +==25861== suppressed: 618,310 bytes in 8,236 blocks +==25861== Reachable blocks (those to which a pointer was found) are not shown. +==25861== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25861== +==25861== For lists of detected and suppressed errors, rerun with: -s +==25861== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCaBasedCellPopulation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCaBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..d6005aad4 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCaBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==25881== Memcheck, a memory error detector +==25881== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25881== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25881== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==25881== Parent PID: 23966 +==25881== +==25881== +==25881== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25881== Open file descriptor 12: +==25881== at 0xF84307D: pipe (pipe.c:29) +==25881== by 0x196BC07D: ??? +==25881== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25881== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25881== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25881== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25881== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25881== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25881== by 0x16556C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25881== by 0x15DBC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25881== by 0x160D98: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25881== by 0x160C38: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25881== by 0x1612CF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25881== by 0x15BFE5: main (TestCaBasedCellPopulation.cpp:19) +==25881== +==25881== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25881== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==25881== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25881== by 0xF13E822: ??? +==25881== by 0xF13E96F: ??? +==25881== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25881== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25881== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25881== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25881== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25881== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25881== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25881== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25881== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25881== by 0x16556C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25881== by 0x15DBC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25881== by 0x160D98: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25881== by 0x160C38: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25881== by 0x1612CF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25881== by 0x15BFE5: main (TestCaBasedCellPopulation.cpp:19) +==25881== +==25881== Open file descriptor 116: +==25881== +==25881== +==25881== Open file descriptor 113: +==25881== +==25881== +==25881== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaBasedCellPopulation_valgrind.txt +==25881== +==25881== +==25881== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25881== +==25881== +==25881== +==25881== HEAP SUMMARY: +==25881== in use at exit: 618,366 bytes in 8,239 blocks +==25881== total heap usage: 75,868 allocs, 67,629 frees, 1,347,378,577 bytes allocated +==25881== +==25881== LEAK SUMMARY: +==25881== definitely lost: 0 bytes in 0 blocks +==25881== indirectly lost: 0 bytes in 0 blocks +==25881== possibly lost: 0 bytes in 0 blocks +==25881== still reachable: 56 bytes in 3 blocks +==25881== suppressed: 618,310 bytes in 8,236 blocks +==25881== Reachable blocks (those to which a pointer was found) are not shown. +==25881== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25881== +==25881== For lists of detected and suppressed errors, rerun with: -s +==25881== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCaBasedDivisionRules_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCaBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..0b1f0fec8 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCaBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==25883== Memcheck, a memory error detector +==25883== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25883== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25883== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==25883== Parent PID: 23966 +==25883== +==25883== +==25883== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25883== Open file descriptor 12: +==25883== at 0xF09707D: pipe (pipe.c:29) +==25883== by 0x196BD07D: ??? +==25883== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25883== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25883== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25883== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25883== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25883== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25883== by 0x12E085: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25883== by 0x128EDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25883== by 0x12B8BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25883== by 0x12B75E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25883== by 0x12BDF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25883== by 0x127305: main (TestCaBasedDivisionRules.cpp:19) +==25883== +==25883== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25883== at 0xF09BA1C: __open_nocancel (open64_nocancel.c:39) +==25883== by 0xF01FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25883== by 0xD4D9822: ??? +==25883== by 0xD4D996F: ??? +==25883== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25883== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25883== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25883== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25883== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25883== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25883== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25883== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25883== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25883== by 0x12E085: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25883== by 0x128EDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25883== by 0x12B8BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25883== by 0x12B75E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25883== by 0x12BDF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25883== by 0x127305: main (TestCaBasedDivisionRules.cpp:19) +==25883== +==25883== Open file descriptor 116: +==25883== +==25883== +==25883== Open file descriptor 113: +==25883== +==25883== +==25883== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaBasedDivisionRules_valgrind.txt +==25883== +==25883== +==25883== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25883== +==25883== +==25883== +==25883== HEAP SUMMARY: +==25883== in use at exit: 618,382 bytes in 8,240 blocks +==25883== total heap usage: 56,340 allocs, 48,100 frees, 1,339,110,234 bytes allocated +==25883== +==25883== LEAK SUMMARY: +==25883== definitely lost: 0 bytes in 0 blocks +==25883== indirectly lost: 0 bytes in 0 blocks +==25883== possibly lost: 0 bytes in 0 blocks +==25883== still reachable: 72 bytes in 4 blocks +==25883== suppressed: 618,310 bytes in 8,236 blocks +==25883== Reachable blocks (those to which a pointer was found) are not shown. +==25883== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25883== +==25883== For lists of detected and suppressed errors, rerun with: -s +==25883== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCaUpdateRules_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCaUpdateRules_valgrind.txt new file mode 100644 index 000000000..11c450ccc --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCaUpdateRules_valgrind.txt @@ -0,0 +1,73 @@ +==25895== Memcheck, a memory error detector +==25895== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25895== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25895== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaUpdateRules -malloc_debug -malloc_dump -memory_info +==25895== Parent PID: 23966 +==25895== +==25895== +==25895== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25895== Open file descriptor 12: +==25895== at 0xDBE007D: pipe (pipe.c:29) +==25895== by 0x196BC07D: ??? +==25895== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25895== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25895== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25895== by 0x10131D38: PetscInitialize (pinit.c:924) +==25895== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25895== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25895== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25895== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25895== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25895== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25895== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25895== by 0x12A645: main (TestCaUpdateRules.cpp:18) +==25895== +==25895== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25895== at 0xDBE4A1C: __open_nocancel (open64_nocancel.c:39) +==25895== by 0xDB68BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25895== by 0xD4D9822: ??? +==25895== by 0xD4D996F: ??? +==25895== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25895== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25895== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25895== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25895== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25895== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25895== by 0x10131D38: PetscInitialize (pinit.c:924) +==25895== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25895== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25895== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25895== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25895== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25895== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25895== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25895== by 0x12A645: main (TestCaUpdateRules.cpp:18) +==25895== +==25895== Open file descriptor 116: +==25895== +==25895== +==25895== Open file descriptor 113: +==25895== +==25895== +==25895== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaUpdateRules_valgrind.txt +==25895== +==25895== +==25895== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25895== +==25895== +==25895== +==25895== HEAP SUMMARY: +==25895== in use at exit: 618,366 bytes in 8,239 blocks +==25895== total heap usage: 55,758 allocs, 47,519 frees, 1,339,202,288 bytes allocated +==25895== +==25895== LEAK SUMMARY: +==25895== definitely lost: 0 bytes in 0 blocks +==25895== indirectly lost: 0 bytes in 0 blocks +==25895== possibly lost: 0 bytes in 0 blocks +==25895== still reachable: 56 bytes in 3 blocks +==25895== suppressed: 618,310 bytes in 8,236 blocks +==25895== Reachable blocks (those to which a pointer was found) are not shown. +==25895== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25895== +==25895== For lists of detected and suppressed errors, rerun with: -s +==25895== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCableTestProblem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCableTestProblem_valgrind.txt new file mode 100644 index 000000000..d78c9518f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCableTestProblem_valgrind.txt @@ -0,0 +1,73 @@ +==25010== Memcheck, a memory error detector +==25010== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25010== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25010== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestCableTestProblem -malloc_debug -malloc_dump -memory_info +==25010== Parent PID: 23966 +==25010== +==25010== +==25010== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25010== Open file descriptor 12: +==25010== at 0x84EF07D: pipe (pipe.c:29) +==25010== by 0x104E607D: ??? +==25010== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25010== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25010== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25010== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25010== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25010== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25010== by 0x1419F6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25010== by 0x13CAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25010== by 0x13F69A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25010== by 0x13F595: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25010== by 0x13FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25010== by 0x13B2F5: main (TestCableTestProblem.cpp:18) +==25010== +==25010== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25010== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25010== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25010== by 0x7D43822: ??? +==25010== by 0x7D4396F: ??? +==25010== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25010== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25010== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25010== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25010== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25010== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25010== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25010== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25010== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25010== by 0x1419F6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25010== by 0x13CAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25010== by 0x13F69A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25010== by 0x13F595: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25010== by 0x13FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25010== by 0x13B2F5: main (TestCableTestProblem.cpp:18) +==25010== +==25010== Open file descriptor 116: +==25010== +==25010== +==25010== Open file descriptor 113: +==25010== +==25010== +==25010== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCableTestProblem_valgrind.txt +==25010== +==25010== +==25010== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25010== +==25010== +==25010== +==25010== HEAP SUMMARY: +==25010== in use at exit: 618,270 bytes in 8,238 blocks +==25010== total heap usage: 104,259 allocs, 96,021 frees, 1,341,042,575 bytes allocated +==25010== +==25010== LEAK SUMMARY: +==25010== definitely lost: 0 bytes in 0 blocks +==25010== indirectly lost: 0 bytes in 0 blocks +==25010== possibly lost: 0 bytes in 0 blocks +==25010== still reachable: 24 bytes in 2 blocks +==25010== suppressed: 618,246 bytes in 8,236 blocks +==25010== Reachable blocks (those to which a pointer was found) are not shown. +==25010== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25010== +==25010== For lists of detected and suppressed errors, rerun with: -s +==25010== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt new file mode 100644 index 000000000..226f27044 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt @@ -0,0 +1,73 @@ +==43150== Memcheck, a memory error detector +==43150== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43150== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43150== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacElectroMechanicsFurtherFunctionality -malloc_debug -malloc_dump -memory_info +==43150== Parent PID: 23966 +==43150== +==43150== +==43150== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43150== Open file descriptor 12: +==43150== at 0xBDB307D: pipe (pipe.c:29) +==43150== by 0x1433707D: ??? +==43150== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43150== by 0xBFB0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43150== by 0xBF49D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43150== by 0xA35ED38: PetscInitialize (pinit.c:924) +==43150== by 0xA2351D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43150== by 0xA235227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43150== by 0x123A6C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43150== by 0x11EC6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43150== by 0x1213DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43150== by 0x12127F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43150== by 0x121915: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43150== by 0x11D095: main (TestCardiacElectroMechanicsFurtherFunctionality.cpp:19) +==43150== +==43150== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43150== at 0xBDB7A1C: __open_nocancel (open64_nocancel.c:39) +==43150== by 0xBD3BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43150== by 0xB5ED822: ??? +==43150== by 0xB5ED96F: ??? +==43150== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43150== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43150== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43150== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43150== by 0xBFB0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43150== by 0xBF49D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43150== by 0xA35ED38: PetscInitialize (pinit.c:924) +==43150== by 0xA2351D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43150== by 0xA235227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43150== by 0x123A6C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43150== by 0x11EC6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43150== by 0x1213DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43150== by 0x12127F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43150== by 0x121915: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43150== by 0x11D095: main (TestCardiacElectroMechanicsFurtherFunctionality.cpp:19) +==43150== +==43150== Open file descriptor 116: +==43150== +==43150== +==43150== Open file descriptor 113: +==43150== +==43150== +==43150== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt +==43150== +==43150== +==43150== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43150== +==43150== +==43150== +==43150== HEAP SUMMARY: +==43150== in use at exit: 618,759 bytes in 8,244 blocks +==43150== total heap usage: 1,208,681 allocs, 1,200,437 frees, 1,496,675,516 bytes allocated +==43150== +==43150== LEAK SUMMARY: +==43150== definitely lost: 0 bytes in 0 blocks +==43150== indirectly lost: 0 bytes in 0 blocks +==43150== possibly lost: 0 bytes in 0 blocks +==43150== still reachable: 24 bytes in 2 blocks +==43150== suppressed: 618,735 bytes in 8,242 blocks +==43150== Reachable blocks (those to which a pointer was found) are not shown. +==43150== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43150== +==43150== For lists of detected and suppressed errors, rerun with: -s +==43150== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 57 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestCardiacElectroMechanicsProblem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCardiacElectroMechanicsProblem_valgrind.txt new file mode 100644 index 000000000..9b613e6a6 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCardiacElectroMechanicsProblem_valgrind.txt @@ -0,0 +1,73 @@ +==43118== Memcheck, a memory error detector +==43118== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43118== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43118== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacElectroMechanicsProblem -malloc_debug -malloc_dump -memory_info +==43118== Parent PID: 23966 +==43118== +==43118== +==43118== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43118== Open file descriptor 12: +==43118== at 0xABFB07D: pipe (pipe.c:29) +==43118== by 0x1433707D: ??? +==43118== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43118== by 0xA402418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43118== by 0xA39BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43118== by 0xAE06D38: PetscInitialize (pinit.c:924) +==43118== by 0xA2C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43118== by 0xA2C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43118== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43118== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43118== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43118== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43118== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43118== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) +==43118== +==43118== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43118== at 0xABFFA1C: __open_nocancel (open64_nocancel.c:39) +==43118== by 0xAB83BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43118== by 0xA2FE822: ??? +==43118== by 0xA2FE96F: ??? +==43118== by 0xDA036DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43118== by 0xDA03938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43118== by 0xD9B9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43118== by 0xD95E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43118== by 0xA402418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43118== by 0xA39BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43118== by 0xAE06D38: PetscInitialize (pinit.c:924) +==43118== by 0xA2C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43118== by 0xA2C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43118== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43118== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43118== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43118== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43118== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43118== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) +==43118== +==43118== Open file descriptor 116: +==43118== +==43118== +==43118== Open file descriptor 113: +==43118== +==43118== +==43118== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacElectroMechanicsProblem_valgrind.txt +==43118== +==43118== +==43118== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43118== +==43118== +==43118== +==43118== HEAP SUMMARY: +==43118== in use at exit: 618,830 bytes in 8,248 blocks +==43118== total heap usage: 583,438 allocs, 575,190 frees, 1,482,518,599 bytes allocated +==43118== +==43118== LEAK SUMMARY: +==43118== definitely lost: 0 bytes in 0 blocks +==43118== indirectly lost: 0 bytes in 0 blocks +==43118== possibly lost: 0 bytes in 0 blocks +==43118== still reachable: 24 bytes in 2 blocks +==43118== suppressed: 618,806 bytes in 8,246 blocks +==43118== Reachable blocks (those to which a pointer was found) are not shown. +==43118== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43118== +==43118== For lists of detected and suppressed errors, rerun with: -s +==43118== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 79 from 38) diff --git a/log-files/2024-10-14_17-51-53/TestCardiacSimulationArchiver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCardiacSimulationArchiver_valgrind.txt new file mode 100644 index 000000000..cf9053c7e --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCardiacSimulationArchiver_valgrind.txt @@ -0,0 +1,73 @@ +==43530== Memcheck, a memory error detector +==43530== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43530== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43530== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacSimulationArchiver -malloc_debug -malloc_dump -memory_info +==43530== Parent PID: 23966 +==43530== +==43530== +==43530== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43530== Open file descriptor 12: +==43530== at 0xBFBA07D: pipe (pipe.c:29) +==43530== by 0x1433707D: ??? +==43530== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43530== by 0xC337418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43530== by 0xC2D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43530== by 0xA671D38: PetscInitialize (pinit.c:924) +==43530== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43530== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43530== by 0x207DA8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43530== by 0x200F5B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43530== by 0x204A44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43530== by 0x2048E4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43530== by 0x204F7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43530== by 0x1FF1D5: main (TestCardiacSimulationArchiver.cpp:19) +==43530== +==43530== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43530== at 0xBFBEA1C: __open_nocancel (open64_nocancel.c:39) +==43530== by 0xBF42BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43530== by 0xA51B822: ??? +==43530== by 0xA51B96F: ??? +==43530== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43530== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43530== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43530== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43530== by 0xC337418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43530== by 0xC2D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43530== by 0xA671D38: PetscInitialize (pinit.c:924) +==43530== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43530== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43530== by 0x207DA8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43530== by 0x200F5B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43530== by 0x204A44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43530== by 0x2048E4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43530== by 0x204F7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43530== by 0x1FF1D5: main (TestCardiacSimulationArchiver.cpp:19) +==43530== +==43530== Open file descriptor 116: +==43530== +==43530== +==43530== Open file descriptor 113: +==43530== +==43530== +==43530== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacSimulationArchiver_valgrind.txt +==43530== +==43530== +==43530== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43530== +==43530== +==43530== +==43530== HEAP SUMMARY: +==43530== in use at exit: 618,759 bytes in 8,244 blocks +==43530== total heap usage: 2,894,964 allocs, 2,886,720 frees, 2,307,099,669 bytes allocated +==43530== +==43530== LEAK SUMMARY: +==43530== definitely lost: 0 bytes in 0 blocks +==43530== indirectly lost: 0 bytes in 0 blocks +==43530== possibly lost: 0 bytes in 0 blocks +==43530== still reachable: 24 bytes in 2 blocks +==43530== suppressed: 618,735 bytes in 8,242 blocks +==43530== Reachable blocks (those to which a pointer was found) are not shown. +==43530== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43530== +==43530== For lists of detected and suppressed errors, rerun with: -s +==43530== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 138 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestCardiacSimulation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCardiacSimulation_valgrind.txt new file mode 100644 index 000000000..06eecbd1d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCardiacSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==43528== Memcheck, a memory error detector +==43528== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43528== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43528== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacSimulation -malloc_debug -malloc_dump -memory_info +==43528== Parent PID: 23966 +==43528== +==43528== +==43528== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43528== Open file descriptor 12: +==43528== at 0x892707D: pipe (pipe.c:29) +==43528== by 0x1433807D: ??? +==43528== by 0xEE784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43528== by 0xA022418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43528== by 0x9FBBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43528== by 0x8CB2D38: PetscInitialize (pinit.c:924) +==43528== by 0x82101D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43528== by 0x8210227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43528== by 0x1202B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43528== by 0x11A98D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43528== by 0x11E13C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43528== by 0x11DFDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43528== by 0x11E673: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43528== by 0x118DB5: main (TestCardiacSimulation.cpp:19) +==43528== +==43528== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43528== at 0x892BA1C: __open_nocancel (open64_nocancel.c:39) +==43528== by 0x88AFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43528== by 0x824A822: ??? +==43528== by 0x824A96F: ??? +==43528== by 0xEF1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43528== by 0xEF1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43528== by 0xEED3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43528== by 0xEE782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43528== by 0xA022418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43528== by 0x9FBBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43528== by 0x8CB2D38: PetscInitialize (pinit.c:924) +==43528== by 0x82101D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43528== by 0x8210227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43528== by 0x1202B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43528== by 0x11A98D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43528== by 0x11E13C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43528== by 0x11DFDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43528== by 0x11E673: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43528== by 0x118DB5: main (TestCardiacSimulation.cpp:19) +==43528== +==43528== Open file descriptor 116: +==43528== +==43528== +==43528== Open file descriptor 113: +==43528== +==43528== +==43528== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacSimulation_valgrind.txt +==43528== +==43528== +==43528== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43528== +==43528== +==43528== +==43528== HEAP SUMMARY: +==43528== in use at exit: 625,891 bytes in 8,260 blocks +==43528== total heap usage: 4,756,897 allocs, 4,748,637 frees, 2,828,621,112 bytes allocated +==43528== +==43528== LEAK SUMMARY: +==43528== definitely lost: 0 bytes in 0 blocks +==43528== indirectly lost: 0 bytes in 0 blocks +==43528== possibly lost: 0 bytes in 0 blocks +==43528== still reachable: 7,156 bytes in 18 blocks +==43528== suppressed: 618,735 bytes in 8,242 blocks +==43528== Reachable blocks (those to which a pointer was found) are not shown. +==43528== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43528== +==43528== For lists of detected and suppressed errors, rerun with: -s +==43528== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 229 from 32) diff --git a/log-files/2024-10-14_17-51-53/TestCellBasedCellProperties_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellBasedCellProperties_valgrind.txt new file mode 100644 index 000000000..d19291ded --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellBasedCellProperties_valgrind.txt @@ -0,0 +1,73 @@ +==25336== Memcheck, a memory error detector +==25336== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25336== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25336== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedCellProperties -malloc_debug -malloc_dump -memory_info +==25336== Parent PID: 23966 +==25336== +==25336== +==25336== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25336== Open file descriptor 12: +==25336== at 0xED5007D: pipe (pipe.c:29) +==25336== by 0x196BD07D: ??? +==25336== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25336== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25336== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25336== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25336== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25336== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25336== by 0x12F18B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25336== by 0x129EE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25336== by 0x12CAE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25336== by 0x12C980: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25336== by 0x12D017: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25336== by 0x128305: main (TestCellBasedCellProperties.cpp:19) +==25336== +==25336== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25336== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25336== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25336== by 0xD4D9822: ??? +==25336== by 0xD4D996F: ??? +==25336== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25336== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25336== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25336== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25336== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25336== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25336== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25336== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25336== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25336== by 0x12F18B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25336== by 0x129EE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25336== by 0x12CAE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25336== by 0x12C980: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25336== by 0x12D017: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25336== by 0x128305: main (TestCellBasedCellProperties.cpp:19) +==25336== +==25336== Open file descriptor 116: +==25336== +==25336== +==25336== Open file descriptor 113: +==25336== +==25336== +==25336== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedCellProperties_valgrind.txt +==25336== +==25336== +==25336== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25336== +==25336== +==25336== +==25336== HEAP SUMMARY: +==25336== in use at exit: 618,366 bytes in 8,239 blocks +==25336== total heap usage: 53,421 allocs, 45,182 frees, 1,338,995,642 bytes allocated +==25336== +==25336== LEAK SUMMARY: +==25336== definitely lost: 0 bytes in 0 blocks +==25336== indirectly lost: 0 bytes in 0 blocks +==25336== possibly lost: 0 bytes in 0 blocks +==25336== still reachable: 56 bytes in 3 blocks +==25336== suppressed: 618,310 bytes in 8,236 blocks +==25336== Reachable blocks (those to which a pointer was found) are not shown. +==25336== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25336== +==25336== For lists of detected and suppressed errors, rerun with: -s +==25336== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellBasedEllipticPdeSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellBasedEllipticPdeSolver_valgrind.txt new file mode 100644 index 000000000..32653ba40 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellBasedEllipticPdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25443== Memcheck, a memory error detector +==25443== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25443== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25443== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedEllipticPdeSolver -malloc_debug -malloc_dump -memory_info +==25443== Parent PID: 23966 +==25443== +==25443== +==25443== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25443== Open file descriptor 12: +==25443== at 0x1109407D: pipe (pipe.c:29) +==25443== by 0x196BC07D: ??? +==25443== by 0x14CBA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25443== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25443== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25443== by 0xF659D38: PetscInitialize (pinit.c:924) +==25443== by 0xF5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25443== by 0xF530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25443== by 0x13C922: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25443== by 0x137A33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25443== by 0x13A5DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25443== by 0x13A4D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25443== by 0x13AAE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25443== by 0x136235: main (TestCellBasedEllipticPdeSolver.cpp:18) +==25443== +==25443== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25443== at 0x11098A1C: __open_nocancel (open64_nocancel.c:39) +==25443== by 0x1101CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25443== by 0x108E8822: ??? +==25443== by 0x108E896F: ??? +==25443== by 0x14D5F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25443== by 0x14D5F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25443== by 0x14D15922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25443== by 0x14CBA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25443== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25443== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25443== by 0xF659D38: PetscInitialize (pinit.c:924) +==25443== by 0xF5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25443== by 0xF530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25443== by 0x13C922: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25443== by 0x137A33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25443== by 0x13A5DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25443== by 0x13A4D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25443== by 0x13AAE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25443== by 0x136235: main (TestCellBasedEllipticPdeSolver.cpp:18) +==25443== +==25443== Open file descriptor 116: +==25443== +==25443== +==25443== Open file descriptor 113: +==25443== +==25443== +==25443== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEllipticPdeSolver_valgrind.txt +==25443== +==25443== +==25443== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25443== +==25443== +==25443== +==25443== HEAP SUMMARY: +==25443== in use at exit: 618,334 bytes in 8,238 blocks +==25443== total heap usage: 55,377 allocs, 47,139 frees, 1,339,444,510 bytes allocated +==25443== +==25443== LEAK SUMMARY: +==25443== definitely lost: 0 bytes in 0 blocks +==25443== indirectly lost: 0 bytes in 0 blocks +==25443== possibly lost: 0 bytes in 0 blocks +==25443== still reachable: 24 bytes in 2 blocks +==25443== suppressed: 618,310 bytes in 8,236 blocks +==25443== Reachable blocks (those to which a pointer was found) are not shown. +==25443== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25443== +==25443== For lists of detected and suppressed errors, rerun with: -s +==25443== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-10-14_17-51-53/TestCellBasedEllipticPdes_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellBasedEllipticPdes_valgrind.txt new file mode 100644 index 000000000..5142fc944 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellBasedEllipticPdes_valgrind.txt @@ -0,0 +1,73 @@ +==25435== Memcheck, a memory error detector +==25435== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25435== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25435== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedEllipticPdes -malloc_debug -malloc_dump -memory_info +==25435== Parent PID: 23966 +==25435== +==25435== +==25435== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25435== Open file descriptor 12: +==25435== at 0x10CFA07D: pipe (pipe.c:29) +==25435== by 0x196BC07D: ??? +==25435== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25435== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25435== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25435== by 0xF292D38: PetscInitialize (pinit.c:924) +==25435== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25435== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25435== by 0x12CAB7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25435== by 0x127CC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25435== by 0x12A3DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25435== by 0x12A2D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25435== by 0x12A8EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25435== by 0x1264C5: main (TestCellBasedEllipticPdes.cpp:18) +==25435== +==25435== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25435== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==25435== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25435== by 0xF13E822: ??? +==25435== by 0xF13E96F: ??? +==25435== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25435== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25435== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25435== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25435== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25435== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25435== by 0xF292D38: PetscInitialize (pinit.c:924) +==25435== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25435== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25435== by 0x12CAB7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25435== by 0x127CC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25435== by 0x12A3DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25435== by 0x12A2D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25435== by 0x12A8EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25435== by 0x1264C5: main (TestCellBasedEllipticPdes.cpp:18) +==25435== +==25435== Open file descriptor 116: +==25435== +==25435== +==25435== Open file descriptor 113: +==25435== +==25435== +==25435== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEllipticPdes_valgrind.txt +==25435== +==25435== +==25435== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25435== +==25435== +==25435== +==25435== HEAP SUMMARY: +==25435== in use at exit: 618,366 bytes in 8,239 blocks +==25435== total heap usage: 79,217 allocs, 70,978 frees, 1,343,928,694 bytes allocated +==25435== +==25435== LEAK SUMMARY: +==25435== definitely lost: 0 bytes in 0 blocks +==25435== indirectly lost: 0 bytes in 0 blocks +==25435== possibly lost: 0 bytes in 0 blocks +==25435== still reachable: 56 bytes in 3 blocks +==25435== suppressed: 618,310 bytes in 8,236 blocks +==25435== Reachable blocks (those to which a pointer was found) are not shown. +==25435== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25435== +==25435== For lists of detected and suppressed errors, rerun with: -s +==25435== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellBasedEventHandler_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellBasedEventHandler_valgrind.txt new file mode 100644 index 000000000..944528188 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellBasedEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==23996== Memcheck, a memory error detector +==23996== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23996== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23996== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCellBasedEventHandler -malloc_debug -malloc_dump -memory_info +==23996== Parent PID: 23966 +==23996== +==23996== +==23996== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23996== Open file descriptor 12: +==23996== at 0x4DEB07D: pipe (pipe.c:29) +==23996== by 0xAEAB07D: ??? +==23996== by 0x643A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23996== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23996== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23996== by 0x5036D38: PetscInitialize (pinit.c:924) +==23996== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23996== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23996== by 0x114A22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23996== by 0x110173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23996== by 0x112AEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23996== by 0x1129E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23996== by 0x112FFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23996== by 0x10E975: main (TestCellBasedEventHandler.cpp:18) +==23996== +==23996== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23996== at 0x4DEFA1C: __open_nocancel (open64_nocancel.c:39) +==23996== by 0x4D73BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23996== by 0x4934822: ??? +==23996== by 0x493496F: ??? +==23996== by 0x64E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23996== by 0x64E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23996== by 0x6497922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23996== by 0x643A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23996== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23996== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23996== by 0x5036D38: PetscInitialize (pinit.c:924) +==23996== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23996== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23996== by 0x114A22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23996== by 0x110173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23996== by 0x112AEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23996== by 0x1129E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23996== by 0x112FFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23996== by 0x10E975: main (TestCellBasedEventHandler.cpp:18) +==23996== +==23996== Open file descriptor 116: +==23996== +==23996== +==23996== Open file descriptor 113: +==23996== +==23996== +==23996== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEventHandler_valgrind.txt +==23996== +==23996== +==23996== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23996== +==23996== +==23996== +==23996== HEAP SUMMARY: +==23996== in use at exit: 617,870 bytes in 8,238 blocks +==23996== total heap usage: 44,914 allocs, 36,676 frees, 1,338,159,714 bytes allocated +==23996== +==23996== LEAK SUMMARY: +==23996== definitely lost: 0 bytes in 0 blocks +==23996== indirectly lost: 0 bytes in 0 blocks +==23996== possibly lost: 0 bytes in 0 blocks +==23996== still reachable: 24 bytes in 2 blocks +==23996== suppressed: 617,846 bytes in 8,236 blocks +==23996== Reachable blocks (those to which a pointer was found) are not shown. +==23996== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23996== +==23996== For lists of detected and suppressed errors, rerun with: -s +==23996== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestCellBasedParabolicPdes_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellBasedParabolicPdes_valgrind.txt new file mode 100644 index 000000000..10d43059d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellBasedParabolicPdes_valgrind.txt @@ -0,0 +1,73 @@ +==25458== Memcheck, a memory error detector +==25458== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25458== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25458== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedParabolicPdes -malloc_debug -malloc_dump -memory_info +==25458== Parent PID: 23966 +==25458== +==25458== +==25458== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25458== Open file descriptor 12: +==25458== at 0x10CFA07D: pipe (pipe.c:29) +==25458== by 0x196BC07D: ??? +==25458== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25458== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25458== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25458== by 0xF292D38: PetscInitialize (pinit.c:924) +==25458== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25458== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25458== by 0x12B8B3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25458== by 0x126B23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25458== by 0x1291D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25458== by 0x1290D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25458== by 0x1296E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25458== by 0x125325: main (TestCellBasedParabolicPdes.cpp:18) +==25458== +==25458== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25458== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==25458== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25458== by 0xF13E822: ??? +==25458== by 0xF13E96F: ??? +==25458== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25458== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25458== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25458== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25458== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25458== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25458== by 0xF292D38: PetscInitialize (pinit.c:924) +==25458== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25458== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25458== by 0x12B8B3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25458== by 0x126B23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25458== by 0x1291D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25458== by 0x1290D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25458== by 0x1296E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25458== by 0x125325: main (TestCellBasedParabolicPdes.cpp:18) +==25458== +==25458== Open file descriptor 116: +==25458== +==25458== +==25458== Open file descriptor 113: +==25458== +==25458== +==25458== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedParabolicPdes_valgrind.txt +==25458== +==25458== +==25458== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25458== +==25458== +==25458== +==25458== HEAP SUMMARY: +==25458== in use at exit: 618,366 bytes in 8,239 blocks +==25458== total heap usage: 69,579 allocs, 61,340 frees, 1,342,138,733 bytes allocated +==25458== +==25458== LEAK SUMMARY: +==25458== definitely lost: 0 bytes in 0 blocks +==25458== indirectly lost: 0 bytes in 0 blocks +==25458== possibly lost: 0 bytes in 0 blocks +==25458== still reachable: 56 bytes in 3 blocks +==25458== suppressed: 618,310 bytes in 8,236 blocks +==25458== Reachable blocks (those to which a pointer was found) are not shown. +==25458== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25458== +==25458== For lists of detected and suppressed errors, rerun with: -s +==25458== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellBetaCateninWriter_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellBetaCateninWriter_valgrind.txt new file mode 100644 index 000000000..6e2e850f3 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellBetaCateninWriter_valgrind.txt @@ -0,0 +1,73 @@ +==40420== Memcheck, a memory error detector +==40420== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40420== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40420== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellBetaCateninWriter -malloc_debug -malloc_dump -memory_info +==40420== Parent PID: 23966 +==40420== +==40420== +==40420== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40420== Open file descriptor 12: +==40420== at 0x1110507D: pipe (pipe.c:29) +==40420== by 0x1B37D07D: ??? +==40420== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40420== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40420== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40420== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40420== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40420== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40420== by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40420== by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40420== by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40420== by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40420== by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40420== by 0x12E905: main (TestCellBetaCateninWriter.cpp:18) +==40420== +==40420== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40420== at 0x11109A1C: __open_nocancel (open64_nocancel.c:39) +==40420== by 0x1108DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40420== by 0x109FE822: ??? +==40420== by 0x109FE96F: ??? +==40420== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40420== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40420== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40420== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40420== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40420== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40420== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40420== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40420== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40420== by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40420== by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40420== by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40420== by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40420== by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40420== by 0x12E905: main (TestCellBetaCateninWriter.cpp:18) +==40420== +==40420== Open file descriptor 116: +==40420== +==40420== +==40420== Open file descriptor 113: +==40420== +==40420== +==40420== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBetaCateninWriter_valgrind.txt +==40420== +==40420== +==40420== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40420== +==40420== +==40420== +==40420== HEAP SUMMARY: +==40420== in use at exit: 618,462 bytes in 8,240 blocks +==40420== total heap usage: 63,280 allocs, 55,040 frees, 1,341,084,087 bytes allocated +==40420== +==40420== LEAK SUMMARY: +==40420== definitely lost: 0 bytes in 0 blocks +==40420== indirectly lost: 0 bytes in 0 blocks +==40420== possibly lost: 0 bytes in 0 blocks +==40420== still reachable: 136 bytes in 4 blocks +==40420== suppressed: 618,326 bytes in 8,236 blocks +==40420== Reachable blocks (those to which a pointer was found) are not shown. +==40420== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40420== +==40420== For lists of detected and suppressed errors, rerun with: -s +==40420== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellCycleModelOdeSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellCycleModelOdeSolver_valgrind.txt new file mode 100644 index 000000000..d158e4a03 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellCycleModelOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25338== Memcheck, a memory error detector +==25338== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25338== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25338== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellCycleModelOdeSolver -malloc_debug -malloc_dump -memory_info +==25338== Parent PID: 23966 +==25338== +==25338== +==25338== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25338== Open file descriptor 12: +==25338== at 0xEF9407D: pipe (pipe.c:29) +==25338== by 0x196BD07D: ??? +==25338== by 0x13C594CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25338== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25338== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25338== by 0xD871D38: PetscInitialize (pinit.c:924) +==25338== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25338== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25338== by 0x162DFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25338== by 0x15D597: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25338== by 0x1604CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25338== by 0x16036A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25338== by 0x160A01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25338== by 0x15B575: main (TestCellCycleModelOdeSolver.cpp:19) +==25338== +==25338== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25338== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25338== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25338== by 0xD71D822: ??? +==25338== by 0xD71D96F: ??? +==25338== by 0x13CFE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25338== by 0x13CFE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25338== by 0x13CB4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25338== by 0x13C592DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25338== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25338== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25338== by 0xD871D38: PetscInitialize (pinit.c:924) +==25338== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25338== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25338== by 0x162DFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25338== by 0x15D597: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25338== by 0x1604CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25338== by 0x16036A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25338== by 0x160A01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25338== by 0x15B575: main (TestCellCycleModelOdeSolver.cpp:19) +==25338== +==25338== Open file descriptor 116: +==25338== +==25338== +==25338== Open file descriptor 113: +==25338== +==25338== +==25338== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellCycleModelOdeSolver_valgrind.txt +==25338== +==25338== +==25338== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25338== +==25338== +==25338== +==25338== HEAP SUMMARY: +==25338== in use at exit: 618,366 bytes in 8,239 blocks +==25338== total heap usage: 547,402 allocs, 539,163 frees, 1,344,758,707 bytes allocated +==25338== +==25338== LEAK SUMMARY: +==25338== definitely lost: 0 bytes in 0 blocks +==25338== indirectly lost: 0 bytes in 0 blocks +==25338== possibly lost: 0 bytes in 0 blocks +==25338== still reachable: 56 bytes in 3 blocks +==25338== suppressed: 618,310 bytes in 8,236 blocks +==25338== Reachable blocks (those to which a pointer was found) are not shown. +==25338== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25338== +==25338== For lists of detected and suppressed errors, rerun with: -s +==25338== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellDataMaps_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellDataMaps_valgrind.txt new file mode 100644 index 000000000..cb2289188 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellDataMaps_valgrind.txt @@ -0,0 +1,73 @@ +==25339== Memcheck, a memory error detector +==25339== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25339== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25339== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellDataMaps -malloc_debug -malloc_dump -memory_info +==25339== Parent PID: 23966 +==25339== +==25339== +==25339== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25339== Open file descriptor 12: +==25339== at 0xED9D07D: pipe (pipe.c:29) +==25339== by 0x196BD07D: ??? +==25339== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25339== by 0xE9EC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25339== by 0xE985D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25339== by 0xD659D38: PetscInitialize (pinit.c:924) +==25339== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25339== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25339== by 0x11C5E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25339== by 0x11792D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25339== by 0x11A1FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25339== by 0x11A09E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25339== by 0x11A735: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25339== by 0x115D55: main (TestCellDataMaps.cpp:19) +==25339== +==25339== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25339== at 0xEDA1A1C: __open_nocancel (open64_nocancel.c:39) +==25339== by 0xED25BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25339== by 0xE8E8822: ??? +==25339== by 0xE8E896F: ??? +==25339== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25339== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25339== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25339== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25339== by 0xE9EC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25339== by 0xE985D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25339== by 0xD659D38: PetscInitialize (pinit.c:924) +==25339== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25339== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25339== by 0x11C5E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25339== by 0x11792D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25339== by 0x11A1FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25339== by 0x11A09E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25339== by 0x11A735: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25339== by 0x115D55: main (TestCellDataMaps.cpp:19) +==25339== +==25339== Open file descriptor 116: +==25339== +==25339== +==25339== Open file descriptor 113: +==25339== +==25339== +==25339== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellDataMaps_valgrind.txt +==25339== +==25339== +==25339== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25339== +==25339== +==25339== +==25339== HEAP SUMMARY: +==25339== in use at exit: 618,494 bytes in 8,240 blocks +==25339== total heap usage: 53,646 allocs, 45,406 frees, 1,338,978,337 bytes allocated +==25339== +==25339== LEAK SUMMARY: +==25339== definitely lost: 0 bytes in 0 blocks +==25339== indirectly lost: 0 bytes in 0 blocks +==25339== possibly lost: 0 bytes in 0 blocks +==25339== still reachable: 184 bytes in 4 blocks +==25339== suppressed: 618,310 bytes in 8,236 blocks +==25339== Reachable blocks (those to which a pointer was found) are not shown. +==25339== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25339== +==25339== For lists of detected and suppressed errors, rerun with: -s +==25339== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellForCrypt_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellForCrypt_valgrind.txt new file mode 100644 index 000000000..34f619a1a --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40202== Memcheck, a memory error detector +==40202== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40202== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40202== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellForCrypt -malloc_debug -malloc_dump -memory_info +==40202== Parent PID: 23966 +==40202== +==40202== +==40202== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40202== Open file descriptor 12: +==40202== at 0xF45E07D: pipe (pipe.c:29) +==40202== by 0x1B37D07D: ??? +==40202== by 0x165804CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40202== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40202== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40202== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40202== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40202== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40202== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40202== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40202== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40202== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40202== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40202== by 0x118975: main (TestCellForCrypt.cpp:18) +==40202== +==40202== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40202== at 0xF462A1C: __open_nocancel (open64_nocancel.c:39) +==40202== by 0xF3E6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40202== by 0xED9B822: ??? +==40202== by 0xED9B96F: ??? +==40202== by 0x166256DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40202== by 0x16625938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40202== by 0x165DB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40202== by 0x165802DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40202== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40202== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40202== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40202== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40202== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40202== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40202== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40202== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40202== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40202== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40202== by 0x118975: main (TestCellForCrypt.cpp:18) +==40202== +==40202== Open file descriptor 116: +==40202== +==40202== +==40202== Open file descriptor 113: +==40202== +==40202== +==40202== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellForCrypt_valgrind.txt +==40202== +==40202== +==40202== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40202== +==40202== +==40202== +==40202== HEAP SUMMARY: +==40202== in use at exit: 618,510 bytes in 8,240 blocks +==40202== total heap usage: 55,769 allocs, 47,529 frees, 1,339,199,046 bytes allocated +==40202== +==40202== LEAK SUMMARY: +==40202== definitely lost: 0 bytes in 0 blocks +==40202== indirectly lost: 0 bytes in 0 blocks +==40202== possibly lost: 0 bytes in 0 blocks +==40202== still reachable: 184 bytes in 4 blocks +==40202== suppressed: 618,326 bytes in 8,236 blocks +==40202== Reachable blocks (those to which a pointer was found) are not shown. +==40202== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40202== +==40202== For lists of detected and suppressed errors, rerun with: -s +==40202== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellKillers_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellKillers_valgrind.txt new file mode 100644 index 000000000..fee7969d8 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellKillers_valgrind.txt @@ -0,0 +1,73 @@ +==25908== Memcheck, a memory error detector +==25908== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25908== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25908== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellKillers -malloc_debug -malloc_dump -memory_info +==25908== Parent PID: 23966 +==25908== +==25908== +==25908== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25908== Open file descriptor 12: +==25908== at 0x10DE107D: pipe (pipe.c:29) +==25908== by 0x196BC07D: ??? +==25908== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25908== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25908== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25908== by 0xF292D38: PetscInitialize (pinit.c:924) +==25908== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25908== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25908== by 0x1A5341: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25908== by 0x19D239: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25908== by 0x1A087C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25908== by 0x1A071C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25908== by 0x1A0DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25908== by 0x19B655: main (TestCellKillers.cpp:19) +==25908== +==25908== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25908== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==25908== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25908== by 0xF13E822: ??? +==25908== by 0xF13E96F: ??? +==25908== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25908== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25908== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25908== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25908== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25908== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25908== by 0xF292D38: PetscInitialize (pinit.c:924) +==25908== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25908== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25908== by 0x1A5341: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25908== by 0x19D239: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25908== by 0x1A087C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25908== by 0x1A071C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25908== by 0x1A0DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25908== by 0x19B655: main (TestCellKillers.cpp:19) +==25908== +==25908== Open file descriptor 116: +==25908== +==25908== +==25908== Open file descriptor 113: +==25908== +==25908== +==25908== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellKillers_valgrind.txt +==25908== +==25908== +==25908== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25908== +==25908== +==25908== +==25908== HEAP SUMMARY: +==25908== in use at exit: 618,366 bytes in 8,239 blocks +==25908== total heap usage: 119,760 allocs, 111,521 frees, 1,344,137,944 bytes allocated +==25908== +==25908== LEAK SUMMARY: +==25908== definitely lost: 0 bytes in 0 blocks +==25908== indirectly lost: 0 bytes in 0 blocks +==25908== possibly lost: 0 bytes in 0 blocks +==25908== still reachable: 56 bytes in 3 blocks +==25908== suppressed: 618,310 bytes in 8,236 blocks +==25908== Reachable blocks (those to which a pointer was found) are not shown. +==25908== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25908== +==25908== For lists of detected and suppressed errors, rerun with: -s +==25908== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellMutationStates_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellMutationStates_valgrind.txt new file mode 100644 index 000000000..d34022fcd --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellMutationStates_valgrind.txt @@ -0,0 +1,73 @@ +==25353== Memcheck, a memory error detector +==25353== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25353== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25353== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellMutationStates -malloc_debug -malloc_dump -memory_info +==25353== Parent PID: 23966 +==25353== +==25353== +==25353== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25353== Open file descriptor 12: +==25353== at 0xED5007D: pipe (pipe.c:29) +==25353== by 0x196BD07D: ??? +==25353== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25353== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25353== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25353== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25353== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25353== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25353== by 0x12BE69: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25353== by 0x126E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25353== by 0x129792: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25353== by 0x129632: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25353== by 0x129CC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25353== by 0x125225: main (TestCellMutationStates.cpp:19) +==25353== +==25353== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25353== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25353== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25353== by 0xD4D9822: ??? +==25353== by 0xD4D996F: ??? +==25353== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25353== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25353== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25353== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25353== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25353== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25353== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25353== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25353== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25353== by 0x12BE69: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25353== by 0x126E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25353== by 0x129792: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25353== by 0x129632: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25353== by 0x129CC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25353== by 0x125225: main (TestCellMutationStates.cpp:19) +==25353== +==25353== Open file descriptor 116: +==25353== +==25353== +==25353== Open file descriptor 113: +==25353== +==25353== +==25353== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellMutationStates_valgrind.txt +==25353== +==25353== +==25353== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25353== +==25353== +==25353== +==25353== HEAP SUMMARY: +==25353== in use at exit: 618,366 bytes in 8,239 blocks +==25353== total heap usage: 53,167 allocs, 44,928 frees, 1,338,923,777 bytes allocated +==25353== +==25353== LEAK SUMMARY: +==25353== definitely lost: 0 bytes in 0 blocks +==25353== indirectly lost: 0 bytes in 0 blocks +==25353== possibly lost: 0 bytes in 0 blocks +==25353== still reachable: 56 bytes in 3 blocks +==25353== suppressed: 618,310 bytes in 8,236 blocks +==25353== Reachable blocks (those to which a pointer was found) are not shown. +==25353== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25353== +==25353== For lists of detected and suppressed errors, rerun with: -s +==25353== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellPopulationBoundaryConditions_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellPopulationBoundaryConditions_valgrind.txt new file mode 100644 index 000000000..1d29bf7f8 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellPopulationBoundaryConditions_valgrind.txt @@ -0,0 +1,73 @@ +==25909== Memcheck, a memory error detector +==25909== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25909== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25909== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationBoundaryConditions -malloc_debug -malloc_dump -memory_info +==25909== Parent PID: 23966 +==25909== +==25909== +==25909== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25909== Open file descriptor 12: +==25909== at 0xF92C07D: pipe (pipe.c:29) +==25909== by 0x196BC07D: ??? +==25909== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25909== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25909== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25909== by 0x10218D38: PetscInitialize (pinit.c:924) +==25909== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25909== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25909== by 0x1550EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25909== by 0x14DBDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25909== by 0x150A32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25909== by 0x1508D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25909== by 0x150F69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25909== by 0x14C005: main (TestCellPopulationBoundaryConditions.cpp:19) +==25909== +==25909== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25909== at 0xF930A1C: __open_nocancel (open64_nocancel.c:39) +==25909== by 0xF8B4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25909== by 0xF13E822: ??? +==25909== by 0xF13E96F: ??? +==25909== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25909== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25909== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25909== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25909== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25909== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25909== by 0x10218D38: PetscInitialize (pinit.c:924) +==25909== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25909== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25909== by 0x1550EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25909== by 0x14DBDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25909== by 0x150A32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25909== by 0x1508D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25909== by 0x150F69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25909== by 0x14C005: main (TestCellPopulationBoundaryConditions.cpp:19) +==25909== +==25909== Open file descriptor 116: +==25909== +==25909== +==25909== Open file descriptor 113: +==25909== +==25909== +==25909== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationBoundaryConditions_valgrind.txt +==25909== +==25909== +==25909== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25909== +==25909== +==25909== +==25909== HEAP SUMMARY: +==25909== in use at exit: 618,366 bytes in 8,239 blocks +==25909== total heap usage: 70,318 allocs, 62,079 frees, 1,342,463,041 bytes allocated +==25909== +==25909== LEAK SUMMARY: +==25909== definitely lost: 0 bytes in 0 blocks +==25909== indirectly lost: 0 bytes in 0 blocks +==25909== possibly lost: 0 bytes in 0 blocks +==25909== still reachable: 56 bytes in 3 blocks +==25909== suppressed: 618,310 bytes in 8,236 blocks +==25909== Reachable blocks (those to which a pointer was found) are not shown. +==25909== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25909== +==25909== For lists of detected and suppressed errors, rerun with: -s +==25909== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellPopulationCountWriters_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellPopulationCountWriters_valgrind.txt new file mode 100644 index 000000000..9d2235839 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellPopulationCountWriters_valgrind.txt @@ -0,0 +1,73 @@ +==25916== Memcheck, a memory error detector +==25916== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25916== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25916== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationCountWriters -malloc_debug -malloc_dump -memory_info +==25916== Parent PID: 23966 +==25916== +==25916== +==25916== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25916== Open file descriptor 12: +==25916== at 0xF84307D: pipe (pipe.c:29) +==25916== by 0x196BC07D: ??? +==25916== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25916== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25916== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25916== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25916== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25916== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25916== by 0x137BD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25916== by 0x130FA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25916== by 0x133996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25916== by 0x133891: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25916== by 0x133EA5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25916== by 0x12F7A5: main (TestCellPopulationCountWriters.cpp:18) +==25916== +==25916== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25916== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==25916== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25916== by 0xF13E822: ??? +==25916== by 0xF13E96F: ??? +==25916== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25916== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25916== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25916== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25916== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25916== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25916== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25916== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25916== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25916== by 0x137BD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25916== by 0x130FA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25916== by 0x133996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25916== by 0x133891: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25916== by 0x133EA5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25916== by 0x12F7A5: main (TestCellPopulationCountWriters.cpp:18) +==25916== +==25916== Open file descriptor 116: +==25916== +==25916== +==25916== Open file descriptor 113: +==25916== +==25916== +==25916== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationCountWriters_valgrind.txt +==25916== +==25916== +==25916== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25916== +==25916== +==25916== +==25916== HEAP SUMMARY: +==25916== in use at exit: 618,366 bytes in 8,239 blocks +==25916== total heap usage: 57,820 allocs, 49,581 frees, 1,346,111,281 bytes allocated +==25916== +==25916== LEAK SUMMARY: +==25916== definitely lost: 0 bytes in 0 blocks +==25916== indirectly lost: 0 bytes in 0 blocks +==25916== possibly lost: 0 bytes in 0 blocks +==25916== still reachable: 56 bytes in 3 blocks +==25916== suppressed: 618,310 bytes in 8,236 blocks +==25916== Reachable blocks (those to which a pointer was found) are not shown. +==25916== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25916== +==25916== For lists of detected and suppressed errors, rerun with: -s +==25916== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellPopulationEventWriters_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellPopulationEventWriters_valgrind.txt new file mode 100644 index 000000000..abb99ed31 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellPopulationEventWriters_valgrind.txt @@ -0,0 +1,73 @@ +==25933== Memcheck, a memory error detector +==25933== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25933== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25933== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationEventWriters -malloc_debug -malloc_dump -memory_info +==25933== Parent PID: 23966 +==25933== +==25933== +==25933== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25933== Open file descriptor 12: +==25933== at 0xF84307D: pipe (pipe.c:29) +==25933== by 0x196BC07D: ??? +==25933== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25933== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25933== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25933== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25933== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25933== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25933== by 0x13559C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25933== by 0x12E53D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25933== by 0x130F8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25933== by 0x130E2C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25933== by 0x1314C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25933== by 0x12C965: main (TestCellPopulationEventWriters.cpp:19) +==25933== +==25933== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25933== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==25933== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25933== by 0xF13E822: ??? +==25933== by 0xF13E96F: ??? +==25933== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25933== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25933== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25933== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25933== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25933== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25933== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25933== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25933== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25933== by 0x13559C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25933== by 0x12E53D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25933== by 0x130F8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25933== by 0x130E2C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25933== by 0x1314C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25933== by 0x12C965: main (TestCellPopulationEventWriters.cpp:19) +==25933== +==25933== Open file descriptor 116: +==25933== +==25933== +==25933== Open file descriptor 113: +==25933== +==25933== +==25933== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationEventWriters_valgrind.txt +==25933== +==25933== +==25933== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25933== +==25933== +==25933== +==25933== HEAP SUMMARY: +==25933== in use at exit: 618,366 bytes in 8,239 blocks +==25933== total heap usage: 69,870 allocs, 61,631 frees, 1,350,932,763 bytes allocated +==25933== +==25933== LEAK SUMMARY: +==25933== definitely lost: 0 bytes in 0 blocks +==25933== indirectly lost: 0 bytes in 0 blocks +==25933== possibly lost: 0 bytes in 0 blocks +==25933== still reachable: 56 bytes in 3 blocks +==25933== suppressed: 618,310 bytes in 8,236 blocks +==25933== Reachable blocks (those to which a pointer was found) are not shown. +==25933== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25933== +==25933== For lists of detected and suppressed errors, rerun with: -s +==25933== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellPopulationWriters_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellPopulationWriters_valgrind.txt new file mode 100644 index 000000000..901d14735 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellPopulationWriters_valgrind.txt @@ -0,0 +1,73 @@ +==25934== Memcheck, a memory error detector +==25934== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25934== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25934== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationWriters -malloc_debug -malloc_dump -memory_info +==25934== Parent PID: 23966 +==25934== +==25934== +==25934== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25934== Open file descriptor 12: +==25934== at 0xF84307D: pipe (pipe.c:29) +==25934== by 0x196BC07D: ??? +==25934== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25934== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25934== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25934== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25934== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25934== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25934== by 0x146C30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25934== by 0x13F5FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25934== by 0x14252E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25934== by 0x1423CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25934== by 0x142A65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25934== by 0x13DA25: main (TestCellPopulationWriters.cpp:19) +==25934== +==25934== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25934== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==25934== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25934== by 0xF13E822: ??? +==25934== by 0xF13E96F: ??? +==25934== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25934== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25934== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25934== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25934== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25934== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25934== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25934== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25934== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25934== by 0x146C30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25934== by 0x13F5FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25934== by 0x14252E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25934== by 0x1423CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25934== by 0x142A65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25934== by 0x13DA25: main (TestCellPopulationWriters.cpp:19) +==25934== +==25934== Open file descriptor 116: +==25934== +==25934== +==25934== Open file descriptor 113: +==25934== +==25934== +==25934== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationWriters_valgrind.txt +==25934== +==25934== +==25934== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25934== +==25934== +==25934== +==25934== HEAP SUMMARY: +==25934== in use at exit: 618,366 bytes in 8,239 blocks +==25934== total heap usage: 157,885 allocs, 149,646 frees, 1,399,032,787 bytes allocated +==25934== +==25934== LEAK SUMMARY: +==25934== definitely lost: 0 bytes in 0 blocks +==25934== indirectly lost: 0 bytes in 0 blocks +==25934== possibly lost: 0 bytes in 0 blocks +==25934== still reachable: 56 bytes in 3 blocks +==25934== suppressed: 618,310 bytes in 8,236 blocks +==25934== Reachable blocks (those to which a pointer was found) are not shown. +==25934== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25934== +==25934== For lists of detected and suppressed errors, rerun with: -s +==25934== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellProliferativeTypes_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellProliferativeTypes_valgrind.txt new file mode 100644 index 000000000..87ebf1eed --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellProliferativeTypes_valgrind.txt @@ -0,0 +1,73 @@ +==25361== Memcheck, a memory error detector +==25361== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25361== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25361== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellProliferativeTypes -malloc_debug -malloc_dump -memory_info +==25361== Parent PID: 23966 +==25361== +==25361== +==25361== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25361== Open file descriptor 12: +==25361== at 0xED5007D: pipe (pipe.c:29) +==25361== by 0x196BD07D: ??? +==25361== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25361== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25361== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25361== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25361== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25361== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25361== by 0x12CF1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25361== by 0x127E29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25361== by 0x12A848: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25361== by 0x12A6E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25361== by 0x12AD7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25361== by 0x126245: main (TestCellProliferativeTypes.cpp:19) +==25361== +==25361== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25361== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25361== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25361== by 0xD4D9822: ??? +==25361== by 0xD4D996F: ??? +==25361== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25361== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25361== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25361== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25361== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25361== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25361== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25361== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25361== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25361== by 0x12CF1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25361== by 0x127E29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25361== by 0x12A848: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25361== by 0x12A6E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25361== by 0x12AD7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25361== by 0x126245: main (TestCellProliferativeTypes.cpp:19) +==25361== +==25361== Open file descriptor 116: +==25361== +==25361== +==25361== Open file descriptor 113: +==25361== +==25361== +==25361== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellProliferativeTypes_valgrind.txt +==25361== +==25361== +==25361== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25361== +==25361== +==25361== +==25361== HEAP SUMMARY: +==25361== in use at exit: 618,366 bytes in 8,239 blocks +==25361== total heap usage: 53,388 allocs, 45,149 frees, 1,339,006,430 bytes allocated +==25361== +==25361== LEAK SUMMARY: +==25361== definitely lost: 0 bytes in 0 blocks +==25361== indirectly lost: 0 bytes in 0 blocks +==25361== possibly lost: 0 bytes in 0 blocks +==25361== still reachable: 56 bytes in 3 blocks +==25361== suppressed: 618,310 bytes in 8,236 blocks +==25361== Reachable blocks (those to which a pointer was found) are not shown. +==25361== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25361== +==25361== For lists of detected and suppressed errors, rerun with: -s +==25361== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellProperties_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellProperties_valgrind.txt new file mode 100644 index 000000000..3a3ae8e90 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellProperties_valgrind.txt @@ -0,0 +1,73 @@ +==43403== Memcheck, a memory error detector +==43403== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43403== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43403== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCellProperties -malloc_debug -malloc_dump -memory_info +==43403== Parent PID: 23966 +==43403== +==43403== +==43403== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43403== Open file descriptor 12: +==43403== at 0x882407D: pipe (pipe.c:29) +==43403== by 0x1433707D: ??? +==43403== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43403== by 0x9F1F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43403== by 0x9EB8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43403== by 0x8BAFD38: PetscInitialize (pinit.c:924) +==43403== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43403== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43403== by 0x11C95A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43403== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43403== by 0x11A450: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43403== by 0x11A2F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43403== by 0x11A987: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43403== by 0x115CD5: main (TestCellProperties.cpp:19) +==43403== +==43403== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43403== at 0x8828A1C: __open_nocancel (open64_nocancel.c:39) +==43403== by 0x87ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43403== by 0x848C822: ??? +==43403== by 0x848C96F: ??? +==43403== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43403== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43403== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43403== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43403== by 0x9F1F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43403== by 0x9EB8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43403== by 0x8BAFD38: PetscInitialize (pinit.c:924) +==43403== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43403== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43403== by 0x11C95A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43403== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43403== by 0x11A450: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43403== by 0x11A2F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43403== by 0x11A987: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43403== by 0x115CD5: main (TestCellProperties.cpp:19) +==43403== +==43403== Open file descriptor 116: +==43403== +==43403== +==43403== Open file descriptor 113: +==43403== +==43403== +==43403== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellProperties_valgrind.txt +==43403== +==43403== +==43403== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43403== +==43403== +==43403== +==43403== HEAP SUMMARY: +==43403== in use at exit: 618,279 bytes in 8,234 blocks +==43403== total heap usage: 1,086,634 allocs, 1,078,400 frees, 1,460,645,732 bytes allocated +==43403== +==43403== LEAK SUMMARY: +==43403== definitely lost: 0 bytes in 0 blocks +==43403== indirectly lost: 0 bytes in 0 blocks +==43403== possibly lost: 0 bytes in 0 blocks +==43403== still reachable: 24 bytes in 2 blocks +==43403== suppressed: 618,255 bytes in 8,232 blocks +==43403== Reachable blocks (those to which a pointer was found) are not shown. +==43403== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43403== +==43403== For lists of detected and suppressed errors, rerun with: -s +==43403== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-10-14_17-51-53/TestCellPropertyCollection_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellPropertyCollection_valgrind.txt new file mode 100644 index 000000000..0032573e6 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellPropertyCollection_valgrind.txt @@ -0,0 +1,73 @@ +==25363== Memcheck, a memory error detector +==25363== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25363== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25363== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPropertyCollection -malloc_debug -malloc_dump -memory_info +==25363== Parent PID: 23966 +==25363== +==25363== +==25363== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25363== Open file descriptor 12: +==25363== at 0xED5007D: pipe (pipe.c:29) +==25363== by 0x196BD07D: ??? +==25363== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25363== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25363== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25363== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25363== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25363== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25363== by 0x1546B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25363== by 0x14F129: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25363== by 0x151D20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25363== by 0x151BC0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25363== by 0x152257: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25363== by 0x14D545: main (TestCellPropertyCollection.cpp:19) +==25363== +==25363== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25363== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25363== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25363== by 0xD4D9822: ??? +==25363== by 0xD4D996F: ??? +==25363== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25363== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25363== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25363== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25363== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25363== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25363== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25363== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25363== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25363== by 0x1546B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25363== by 0x14F129: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25363== by 0x151D20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25363== by 0x151BC0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25363== by 0x152257: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25363== by 0x14D545: main (TestCellPropertyCollection.cpp:19) +==25363== +==25363== Open file descriptor 116: +==25363== +==25363== +==25363== Open file descriptor 113: +==25363== +==25363== +==25363== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPropertyCollection_valgrind.txt +==25363== +==25363== +==25363== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25363== +==25363== +==25363== +==25363== HEAP SUMMARY: +==25363== in use at exit: 618,366 bytes in 8,239 blocks +==25363== total heap usage: 53,255 allocs, 45,016 frees, 1,338,931,214 bytes allocated +==25363== +==25363== LEAK SUMMARY: +==25363== definitely lost: 0 bytes in 0 blocks +==25363== indirectly lost: 0 bytes in 0 blocks +==25363== possibly lost: 0 bytes in 0 blocks +==25363== still reachable: 56 bytes in 3 blocks +==25363== suppressed: 618,310 bytes in 8,236 blocks +==25363== Reachable blocks (those to which a pointer was found) are not shown. +==25363== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25363== +==25363== For lists of detected and suppressed errors, rerun with: -s +==25363== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellPropertyRegistry_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellPropertyRegistry_valgrind.txt new file mode 100644 index 000000000..413163f8b --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellPropertyRegistry_valgrind.txt @@ -0,0 +1,73 @@ +==25373== Memcheck, a memory error detector +==25373== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25373== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25373== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPropertyRegistry -malloc_debug -malloc_dump -memory_info +==25373== Parent PID: 23966 +==25373== +==25373== +==25373== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25373== Open file descriptor 12: +==25373== at 0xED5007D: pipe (pipe.c:29) +==25373== by 0x196BD07D: ??? +==25373== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25373== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25373== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25373== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25373== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25373== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25373== by 0x15B69D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25373== by 0x156089: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25373== by 0x158D4C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25373== by 0x158BEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25373== by 0x159283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25373== by 0x1544A5: main (TestCellPropertyRegistry.cpp:19) +==25373== +==25373== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25373== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25373== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25373== by 0xD4D9822: ??? +==25373== by 0xD4D996F: ??? +==25373== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25373== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25373== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25373== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25373== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25373== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25373== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25373== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25373== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25373== by 0x15B69D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25373== by 0x156089: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25373== by 0x158D4C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25373== by 0x158BEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25373== by 0x159283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25373== by 0x1544A5: main (TestCellPropertyRegistry.cpp:19) +==25373== +==25373== Open file descriptor 116: +==25373== +==25373== +==25373== Open file descriptor 113: +==25373== +==25373== +==25373== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPropertyRegistry_valgrind.txt +==25373== +==25373== +==25373== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25373== +==25373== +==25373== +==25373== HEAP SUMMARY: +==25373== in use at exit: 618,366 bytes in 8,239 blocks +==25373== total heap usage: 53,292 allocs, 45,053 frees, 1,338,959,743 bytes allocated +==25373== +==25373== LEAK SUMMARY: +==25373== definitely lost: 0 bytes in 0 blocks +==25373== indirectly lost: 0 bytes in 0 blocks +==25373== possibly lost: 0 bytes in 0 blocks +==25373== still reachable: 56 bytes in 3 blocks +==25373== suppressed: 618,310 bytes in 8,236 blocks +==25373== Reachable blocks (those to which a pointer was found) are not shown. +==25373== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25373== +==25373== For lists of detected and suppressed errors, rerun with: -s +==25373== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellSrn_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellSrn_valgrind.txt new file mode 100644 index 000000000..0fe3d3bac --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellSrn_valgrind.txt @@ -0,0 +1,73 @@ +==25318== Memcheck, a memory error detector +==25318== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25318== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25318== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellSrn -malloc_debug -malloc_dump -memory_info +==25318== Parent PID: 23966 +==25318== +==25318== +==25318== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25318== Open file descriptor 12: +==25318== at 0xED0E07D: pipe (pipe.c:29) +==25318== by 0x196BD07D: ??? +==25318== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25318== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25318== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25318== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25318== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25318== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25318== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25318== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25318== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25318== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25318== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25318== by 0x113935: main (TestCellSrn.cpp:18) +==25318== +==25318== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25318== at 0xED12A1C: __open_nocancel (open64_nocancel.c:39) +==25318== by 0xEC96BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25318== by 0xE859822: ??? +==25318== by 0xE85996F: ??? +==25318== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25318== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25318== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25318== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25318== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25318== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25318== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25318== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25318== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25318== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25318== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25318== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25318== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25318== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25318== by 0x113935: main (TestCellSrn.cpp:18) +==25318== +==25318== Open file descriptor 116: +==25318== +==25318== +==25318== Open file descriptor 113: +==25318== +==25318== +==25318== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellSrn_valgrind.txt +==25318== +==25318== +==25318== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25318== +==25318== +==25318== +==25318== HEAP SUMMARY: +==25318== in use at exit: 618,430 bytes in 8,240 blocks +==25318== total heap usage: 63,350 allocs, 55,110 frees, 1,339,389,364 bytes allocated +==25318== +==25318== LEAK SUMMARY: +==25318== definitely lost: 0 bytes in 0 blocks +==25318== indirectly lost: 0 bytes in 0 blocks +==25318== possibly lost: 0 bytes in 0 blocks +==25318== still reachable: 120 bytes in 4 blocks +==25318== suppressed: 618,310 bytes in 8,236 blocks +==25318== Reachable blocks (those to which a pointer was found) are not shown. +==25318== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25318== +==25318== For lists of detected and suppressed errors, rerun with: -s +==25318== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellWriters_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellWriters_valgrind.txt new file mode 100644 index 000000000..4258bb759 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellWriters_valgrind.txt @@ -0,0 +1,73 @@ +==25957== Memcheck, a memory error detector +==25957== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25957== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25957== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellWriters -malloc_debug -malloc_dump -memory_info +==25957== Parent PID: 23966 +==25957== +==25957== +==25957== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25957== Open file descriptor 12: +==25957== at 0xFB1607D: pipe (pipe.c:29) +==25957== by 0x196BD07D: ??? +==25957== by 0x14CBB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25957== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25957== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25957== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25957== by 0xF3D51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25957== by 0xF3D5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25957== by 0x144A2A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25957== by 0x13CE5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25957== by 0x14024C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25957== by 0x1400EC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25957== by 0x140783: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25957== by 0x13B285: main (TestCellWriters.cpp:19) +==25957== +==25957== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25957== at 0xFB1AA1C: __open_nocancel (open64_nocancel.c:39) +==25957== by 0xFA9EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25957== by 0xF40F822: ??? +==25957== by 0xF40F96F: ??? +==25957== by 0x14D606DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25957== by 0x14D60938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25957== by 0x14D16922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25957== by 0x14CBB2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25957== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25957== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25957== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25957== by 0xF3D51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25957== by 0xF3D5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25957== by 0x144A2A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25957== by 0x13CE5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25957== by 0x14024C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25957== by 0x1400EC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25957== by 0x140783: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25957== by 0x13B285: main (TestCellWriters.cpp:19) +==25957== +==25957== Open file descriptor 116: +==25957== +==25957== +==25957== Open file descriptor 113: +==25957== +==25957== +==25957== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellWriters_valgrind.txt +==25957== +==25957== +==25957== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25957== +==25957== +==25957== +==25957== HEAP SUMMARY: +==25957== in use at exit: 618,366 bytes in 8,239 blocks +==25957== total heap usage: 69,809 allocs, 61,570 frees, 1,342,419,936 bytes allocated +==25957== +==25957== LEAK SUMMARY: +==25957== definitely lost: 0 bytes in 0 blocks +==25957== indirectly lost: 0 bytes in 0 blocks +==25957== possibly lost: 0 bytes in 0 blocks +==25957== still reachable: 56 bytes in 3 blocks +==25957== suppressed: 618,310 bytes in 8,236 blocks +==25957== Reachable blocks (those to which a pointer was found) are not shown. +==25957== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25957== +==25957== For lists of detected and suppressed errors, rerun with: -s +==25957== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCell_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCell_valgrind.txt new file mode 100644 index 000000000..d88ca1e52 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCell_valgrind.txt @@ -0,0 +1,73 @@ +==25311== Memcheck, a memory error detector +==25311== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25311== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25311== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCell -malloc_debug -malloc_dump -memory_info +==25311== Parent PID: 23966 +==25311== +==25311== +==25311== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25311== Open file descriptor 12: +==25311== at 0xED0E07D: pipe (pipe.c:29) +==25311== by 0x196BD07D: ??? +==25311== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25311== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25311== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25311== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25311== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25311== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25311== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25311== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25311== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25311== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25311== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25311== by 0x1222F5: main (TestCell.cpp:19) +==25311== +==25311== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25311== at 0xED12A1C: __open_nocancel (open64_nocancel.c:39) +==25311== by 0xEC96BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25311== by 0xE859822: ??? +==25311== by 0xE85996F: ??? +==25311== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25311== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25311== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25311== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25311== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25311== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25311== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25311== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25311== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25311== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25311== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25311== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25311== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25311== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25311== by 0x1222F5: main (TestCell.cpp:19) +==25311== +==25311== Open file descriptor 116: +==25311== +==25311== +==25311== Open file descriptor 113: +==25311== +==25311== +==25311== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCell_valgrind.txt +==25311== +==25311== +==25311== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25311== +==25311== +==25311== +==25311== HEAP SUMMARY: +==25311== in use at exit: 618,423 bytes in 8,236 blocks +==25311== total heap usage: 5,183,522 allocs, 5,175,286 frees, 1,819,192,022 bytes allocated +==25311== +==25311== LEAK SUMMARY: +==25311== definitely lost: 0 bytes in 0 blocks +==25311== indirectly lost: 0 bytes in 0 blocks +==25311== possibly lost: 0 bytes in 0 blocks +==25311== still reachable: 184 bytes in 4 blocks +==25311== suppressed: 618,239 bytes in 8,232 blocks +==25311== Reachable blocks (those to which a pointer was found) are not shown. +==25311== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25311== +==25311== For lists of detected and suppressed errors, rerun with: -s +==25311== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestCellsGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellsGenerator_valgrind.txt new file mode 100644 index 000000000..85ee86306 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==25387== Memcheck, a memory error detector +==25387== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25387== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25387== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellsGenerator -malloc_debug -malloc_dump -memory_info +==25387== Parent PID: 23966 +==25387== +==25387== +==25387== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25387== Open file descriptor 12: +==25387== at 0xF80107D: pipe (pipe.c:29) +==25387== by 0x196BC07D: ??? +==25387== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25387== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25387== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25387== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25387== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25387== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25387== by 0x1248EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25387== by 0x11F90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25387== by 0x122428: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25387== by 0x1222C8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25387== by 0x12295F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25387== by 0x11DD35: main (TestCellsGenerator.cpp:19) +==25387== +==25387== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25387== at 0xF805A1C: __open_nocancel (open64_nocancel.c:39) +==25387== by 0xF789BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25387== by 0xF13E822: ??? +==25387== by 0xF13E96F: ??? +==25387== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25387== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25387== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25387== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25387== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25387== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25387== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25387== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25387== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25387== by 0x1248EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25387== by 0x11F90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25387== by 0x122428: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25387== by 0x1222C8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25387== by 0x12295F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25387== by 0x11DD35: main (TestCellsGenerator.cpp:19) +==25387== +==25387== Open file descriptor 116: +==25387== +==25387== +==25387== Open file descriptor 113: +==25387== +==25387== +==25387== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellsGenerator_valgrind.txt +==25387== +==25387== +==25387== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25387== +==25387== +==25387== +==25387== HEAP SUMMARY: +==25387== in use at exit: 618,430 bytes in 8,240 blocks +==25387== total heap usage: 69,419 allocs, 61,179 frees, 1,340,699,475 bytes allocated +==25387== +==25387== LEAK SUMMARY: +==25387== definitely lost: 0 bytes in 0 blocks +==25387== indirectly lost: 0 bytes in 0 blocks +==25387== possibly lost: 0 bytes in 0 blocks +==25387== still reachable: 120 bytes in 4 blocks +==25387== suppressed: 618,310 bytes in 8,236 blocks +==25387== Reachable blocks (those to which a pointer was found) are not shown. +==25387== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25387== +==25387== For lists of detected and suppressed errors, rerun with: -s +==25387== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCellwiseDataGradient_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCellwiseDataGradient_valgrind.txt new file mode 100644 index 000000000..72350da38 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCellwiseDataGradient_valgrind.txt @@ -0,0 +1,73 @@ +==25942== Memcheck, a memory error detector +==25942== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25942== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25942== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellwiseDataGradient -malloc_debug -malloc_dump -memory_info +==25942== Parent PID: 23966 +==25942== +==25942== +==25942== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25942== Open file descriptor 12: +==25942== at 0xF80107D: pipe (pipe.c:29) +==25942== by 0x196BC07D: ??? +==25942== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25942== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25942== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25942== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25942== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25942== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25942== by 0x11DD52: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25942== by 0x119493: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25942== by 0x11B86C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25942== by 0x11B767: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25942== by 0x11BD7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25942== by 0x117C95: main (TestCellwiseDataGradient.cpp:18) +==25942== +==25942== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25942== at 0xF805A1C: __open_nocancel (open64_nocancel.c:39) +==25942== by 0xF789BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25942== by 0xF13E822: ??? +==25942== by 0xF13E96F: ??? +==25942== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25942== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25942== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25942== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25942== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25942== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25942== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25942== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25942== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25942== by 0x11DD52: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25942== by 0x119493: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25942== by 0x11B86C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25942== by 0x11B767: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25942== by 0x11BD7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25942== by 0x117C95: main (TestCellwiseDataGradient.cpp:18) +==25942== +==25942== Open file descriptor 116: +==25942== +==25942== +==25942== Open file descriptor 113: +==25942== +==25942== +==25942== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellwiseDataGradient_valgrind.txt +==25942== +==25942== +==25942== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25942== +==25942== +==25942== +==25942== HEAP SUMMARY: +==25942== in use at exit: 618,366 bytes in 8,239 blocks +==25942== total heap usage: 418,858 allocs, 410,619 frees, 1,353,657,864 bytes allocated +==25942== +==25942== LEAK SUMMARY: +==25942== definitely lost: 0 bytes in 0 blocks +==25942== indirectly lost: 0 bytes in 0 blocks +==25942== possibly lost: 0 bytes in 0 blocks +==25942== still reachable: 56 bytes in 3 blocks +==25942== suppressed: 618,310 bytes in 8,236 blocks +==25942== Reachable blocks (those to which a pointer was found) are not shown. +==25942== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25942== +==25942== For lists of detected and suppressed errors, rerun with: -s +==25942== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCentreBasedDivisionRules_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCentreBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..90698658d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCentreBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==25964== Memcheck, a memory error detector +==25964== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25964== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25964== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCentreBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==25964== Parent PID: 23966 +==25964== +==25964== +==25964== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25964== Open file descriptor 12: +==25964== at 0x10DE107D: pipe (pipe.c:29) +==25964== by 0x196BC07D: ??? +==25964== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25964== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25964== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25964== by 0xF292D38: PetscInitialize (pinit.c:924) +==25964== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25964== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25964== by 0x140B79: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25964== by 0x13BAA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25964== by 0x13E124: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25964== by 0x13E020: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25964== by 0x13E633: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25964== by 0x13A2A5: main (TestCentreBasedDivisionRules.cpp:18) +==25964== +==25964== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25964== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==25964== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25964== by 0xF13E822: ??? +==25964== by 0xF13E96F: ??? +==25964== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25964== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25964== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25964== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25964== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25964== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25964== by 0xF292D38: PetscInitialize (pinit.c:924) +==25964== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25964== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25964== by 0x140B79: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25964== by 0x13BAA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25964== by 0x13E124: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25964== by 0x13E020: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25964== by 0x13E633: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25964== by 0x13A2A5: main (TestCentreBasedDivisionRules.cpp:18) +==25964== +==25964== Open file descriptor 116: +==25964== +==25964== +==25964== Open file descriptor 113: +==25964== +==25964== +==25964== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCentreBasedDivisionRules_valgrind.txt +==25964== +==25964== +==25964== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25964== +==25964== +==25964== +==25964== HEAP SUMMARY: +==25964== in use at exit: 618,366 bytes in 8,239 blocks +==25964== total heap usage: 58,549 allocs, 50,310 frees, 1,339,872,199 bytes allocated +==25964== +==25964== LEAK SUMMARY: +==25964== definitely lost: 0 bytes in 0 blocks +==25964== indirectly lost: 0 bytes in 0 blocks +==25964== possibly lost: 0 bytes in 0 blocks +==25964== still reachable: 56 bytes in 3 blocks +==25964== suppressed: 618,310 bytes in 8,236 blocks +==25964== Reachable blocks (those to which a pointer was found) are not shown. +==25964== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25964== +==25964== For lists of detected and suppressed errors, rerun with: -s +==25964== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestChasteBuildInfo_valgrind.txt b/log-files/2024-10-14_17-51-53/TestChasteBuildInfo_valgrind.txt new file mode 100644 index 000000000..2fd2c16c8 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestChasteBuildInfo_valgrind.txt @@ -0,0 +1,73 @@ +==23997== Memcheck, a memory error detector +==23997== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23997== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23997== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestChasteBuildInfo -malloc_debug -malloc_dump -memory_info +==23997== Parent PID: 23966 +==23997== +==23997== +==23997== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23997== Open file descriptor 12: +==23997== at 0x616907D: pipe (pipe.c:29) +==23997== by 0xAEAD07D: ??? +==23997== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23997== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23997== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23997== by 0x4A23D38: PetscInitialize (pinit.c:924) +==23997== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23997== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23997== by 0x111D89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23997== by 0x10DC93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23997== by 0x10FE44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23997== by 0x10FD40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23997== by 0x110353: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23997== by 0x10C495: main (TestChasteBuildInfo.cpp:18) +==23997== +==23997== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23997== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==23997== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23997== by 0x5CB2822: ??? +==23997== by 0x5CB296F: ??? +==23997== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23997== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23997== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23997== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23997== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23997== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23997== by 0x4A23D38: PetscInitialize (pinit.c:924) +==23997== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23997== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23997== by 0x111D89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23997== by 0x10DC93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23997== by 0x10FE44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23997== by 0x10FD40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23997== by 0x110353: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23997== by 0x10C495: main (TestChasteBuildInfo.cpp:18) +==23997== +==23997== Open file descriptor 116: +==23997== +==23997== +==23997== Open file descriptor 113: +==23997== +==23997== +==23997== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChasteBuildInfo_valgrind.txt +==23997== +==23997== +==23997== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23997== +==23997== +==23997== +==23997== HEAP SUMMARY: +==23997== in use at exit: 617,870 bytes in 8,238 blocks +==23997== total heap usage: 44,925 allocs, 36,687 frees, 1,338,165,456 bytes allocated +==23997== +==23997== LEAK SUMMARY: +==23997== definitely lost: 0 bytes in 0 blocks +==23997== indirectly lost: 0 bytes in 0 blocks +==23997== possibly lost: 0 bytes in 0 blocks +==23997== still reachable: 24 bytes in 2 blocks +==23997== suppressed: 617,846 bytes in 8,236 blocks +==23997== Reachable blocks (those to which a pointer was found) are not shown. +==23997== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23997== +==23997== For lists of detected and suppressed errors, rerun with: -s +==23997== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestChastePoint_valgrind.txt b/log-files/2024-10-14_17-51-53/TestChastePoint_valgrind.txt new file mode 100644 index 000000000..42668c59d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestChastePoint_valgrind.txt @@ -0,0 +1,73 @@ +==24346== Memcheck, a memory error detector +==24346== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24346== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24346== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestChastePoint -malloc_debug -malloc_dump -memory_info +==24346== Parent PID: 23966 +==24346== +==24346== +==24346== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24346== Open file descriptor 12: +==24346== at 0x7E0E07D: pipe (pipe.c:29) +==24346== by 0x100D407D: ??? +==24346== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24346== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24346== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24346== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24346== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24346== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24346== by 0x1434C7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24346== by 0x13DFC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24346== by 0x140D84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24346== by 0x140C24: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24346== by 0x1412BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24346== by 0x13C3E5: main (TestChastePoint.cpp:19) +==24346== +==24346== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24346== at 0x7E12A1C: __open_nocancel (open64_nocancel.c:39) +==24346== by 0x7D96BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24346== by 0x6597822: ??? +==24346== by 0x659796F: ??? +==24346== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24346== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24346== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24346== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24346== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24346== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24346== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24346== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24346== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24346== by 0x1434C7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24346== by 0x13DFC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24346== by 0x140D84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24346== by 0x140C24: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24346== by 0x1412BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24346== by 0x13C3E5: main (TestChastePoint.cpp:19) +==24346== +==24346== Open file descriptor 116: +==24346== +==24346== +==24346== Open file descriptor 113: +==24346== +==24346== +==24346== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChastePoint_valgrind.txt +==24346== +==24346== +==24346== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24346== +==24346== +==24346== +==24346== HEAP SUMMARY: +==24346== in use at exit: 618,238 bytes in 8,238 blocks +==24346== total heap usage: 47,414 allocs, 39,176 frees, 1,338,408,439 bytes allocated +==24346== +==24346== LEAK SUMMARY: +==24346== definitely lost: 0 bytes in 0 blocks +==24346== indirectly lost: 0 bytes in 0 blocks +==24346== possibly lost: 0 bytes in 0 blocks +==24346== still reachable: 24 bytes in 2 blocks +==24346== suppressed: 618,214 bytes in 8,236 blocks +==24346== Reachable blocks (those to which a pointer was found) are not shown. +==24346== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24346== +==24346== For lists of detected and suppressed errors, rerun with: -s +==24346== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-10-14_17-51-53/TestChasteRegions_valgrind.txt b/log-files/2024-10-14_17-51-53/TestChasteRegions_valgrind.txt new file mode 100644 index 000000000..7001068f1 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestChasteRegions_valgrind.txt @@ -0,0 +1,73 @@ +==24348== Memcheck, a memory error detector +==24348== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24348== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24348== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestChasteRegions -malloc_debug -malloc_dump -memory_info +==24348== Parent PID: 23966 +==24348== +==24348== +==24348== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24348== Open file descriptor 12: +==24348== at 0x6A4007D: pipe (pipe.c:29) +==24348== by 0x100D407D: ??? +==24348== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24348== by 0x804A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24348== by 0x7FE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24348== by 0x6CDAD38: PetscInitialize (pinit.c:924) +==24348== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24348== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24348== by 0x127EAE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24348== by 0x122DBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24348== by 0x12589A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24348== by 0x12573A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24348== by 0x125DD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24348== by 0x1211E5: main (TestChasteRegions.cpp:19) +==24348== +==24348== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24348== at 0x6A44A1C: __open_nocancel (open64_nocancel.c:39) +==24348== by 0x69C8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24348== by 0x6597822: ??? +==24348== by 0x659796F: ??? +==24348== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24348== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24348== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24348== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24348== by 0x804A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24348== by 0x7FE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24348== by 0x6CDAD38: PetscInitialize (pinit.c:924) +==24348== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24348== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24348== by 0x127EAE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24348== by 0x122DBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24348== by 0x12589A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24348== by 0x12573A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24348== by 0x125DD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24348== by 0x1211E5: main (TestChasteRegions.cpp:19) +==24348== +==24348== Open file descriptor 116: +==24348== +==24348== +==24348== Open file descriptor 113: +==24348== +==24348== +==24348== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChasteRegions_valgrind.txt +==24348== +==24348== +==24348== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24348== +==24348== +==24348== +==24348== HEAP SUMMARY: +==24348== in use at exit: 618,238 bytes in 8,238 blocks +==24348== total heap usage: 47,509 allocs, 39,271 frees, 1,338,415,658 bytes allocated +==24348== +==24348== LEAK SUMMARY: +==24348== definitely lost: 0 bytes in 0 blocks +==24348== indirectly lost: 0 bytes in 0 blocks +==24348== possibly lost: 0 bytes in 0 blocks +==24348== still reachable: 24 bytes in 2 blocks +==24348== suppressed: 618,214 bytes in 8,236 blocks +==24348== Reachable blocks (those to which a pointer was found) are not shown. +==24348== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24348== +==24348== For lists of detected and suppressed errors, rerun with: -s +==24348== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestChebyshevIteration_valgrind.txt b/log-files/2024-10-14_17-51-53/TestChebyshevIteration_valgrind.txt new file mode 100644 index 000000000..a96d2d949 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestChebyshevIteration_valgrind.txt @@ -0,0 +1,73 @@ +==24275== Memcheck, a memory error detector +==24275== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24275== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24275== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestChebyshevIteration -malloc_debug -malloc_dump -memory_info +==24275== Parent PID: 23966 +==24275== +==24275== +==24275== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24275== Open file descriptor 12: +==24275== at 0x60C107D: pipe (pipe.c:29) +==24275== by 0xAF4107D: ??? +==24275== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24275== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24275== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24275== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24275== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24275== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24275== by 0x115156: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24275== by 0x11068D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24275== by 0x112F8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24275== by 0x112E2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24275== by 0x1134C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24275== by 0x10EAB5: main (TestChebyshevIteration.cpp:19) +==24275== +==24275== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24275== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24275== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24275== by 0x5D41822: ??? +==24275== by 0x5D4196F: ??? +==24275== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24275== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24275== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24275== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24275== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24275== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24275== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24275== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24275== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24275== by 0x115156: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24275== by 0x11068D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24275== by 0x112F8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24275== by 0x112E2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24275== by 0x1134C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24275== by 0x10EAB5: main (TestChebyshevIteration.cpp:19) +==24275== +==24275== Open file descriptor 116: +==24275== +==24275== +==24275== Open file descriptor 113: +==24275== +==24275== +==24275== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChebyshevIteration_valgrind.txt +==24275== +==24275== +==24275== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24275== +==24275== +==24275== +==24275== HEAP SUMMARY: +==24275== in use at exit: 617,886 bytes in 8,238 blocks +==24275== total heap usage: 49,163 allocs, 40,925 frees, 1,357,739,852 bytes allocated +==24275== +==24275== LEAK SUMMARY: +==24275== definitely lost: 0 bytes in 0 blocks +==24275== indirectly lost: 0 bytes in 0 blocks +==24275== possibly lost: 0 bytes in 0 blocks +==24275== still reachable: 24 bytes in 2 blocks +==24275== suppressed: 617,862 bytes in 8,236 blocks +==24275== Reachable blocks (those to which a pointer was found) are not shown. +==24275== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24275== +==24275== For lists of detected and suppressed errors, rerun with: -s +==24275== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestCheckpointing_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCheckpointing_valgrind.txt new file mode 100644 index 000000000..8c151b049 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCheckpointing_valgrind.txt @@ -0,0 +1,73 @@ +==43538== Memcheck, a memory error detector +==43538== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43538== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43538== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCheckpointing -malloc_debug -malloc_dump -memory_info +==43538== Parent PID: 23966 +==43538== +==43538== +==43538== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43538== Open file descriptor 12: +==43538== at 0xA7CE07D: pipe (pipe.c:29) +==43538== by 0x1433707D: ??? +==43538== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43538== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43538== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43538== by 0xAB57D38: PetscInitialize (pinit.c:924) +==43538== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43538== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43538== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43538== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43538== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43538== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43538== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43538== by 0x11CCF5: main (TestCheckpointing.cpp:18) +==43538== +==43538== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43538== at 0xA7D2A1C: __open_nocancel (open64_nocancel.c:39) +==43538== by 0xA756BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43538== by 0xA0EF822: ??? +==43538== by 0xA0EF96F: ??? +==43538== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43538== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43538== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43538== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43538== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43538== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43538== by 0xAB57D38: PetscInitialize (pinit.c:924) +==43538== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43538== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43538== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43538== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43538== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43538== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43538== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43538== by 0x11CCF5: main (TestCheckpointing.cpp:18) +==43538== +==43538== Open file descriptor 116: +==43538== +==43538== +==43538== Open file descriptor 113: +==43538== +==43538== +==43538== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCheckpointing_valgrind.txt +==43538== +==43538== +==43538== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43538== +==43538== +==43538== +==43538== HEAP SUMMARY: +==43538== in use at exit: 618,759 bytes in 8,244 blocks +==43538== total heap usage: 834,308 allocs, 826,064 frees, 1,443,021,696 bytes allocated +==43538== +==43538== LEAK SUMMARY: +==43538== definitely lost: 0 bytes in 0 blocks +==43538== indirectly lost: 0 bytes in 0 blocks +==43538== possibly lost: 0 bytes in 0 blocks +==43538== still reachable: 24 bytes in 2 blocks +==43538== suppressed: 618,735 bytes in 8,242 blocks +==43538== Reachable blocks (those to which a pointer was found) are not shown. +==43538== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43538== +==43538== For lists of detected and suppressed errors, rerun with: -s +==43538== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 60 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestCitations_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCitations_valgrind.txt new file mode 100644 index 000000000..4adafae21 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCitations_valgrind.txt @@ -0,0 +1,79 @@ +==23969== Memcheck, a memory error detector +==23969== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23969== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23969== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCitations -malloc_debug -malloc_dump -memory_info +==23969== Parent PID: 23966 +==23969== +==23969== +==23969== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23969== Open file descriptor 12: +==23969== at 0x4CB207D: pipe (pipe.c:29) +==23969== by 0xAEAD07D: ??? +==23969== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23969== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23969== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23969== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23969== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23969== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23969== by 0x11862B: TestCitations::TestChasteCitation() (TestCitations.hpp:72) +==23969== by 0x118ED8: TestDescription_TestCitations_TestChasteCitation::runTest() (TestCitations.cpp:30) +==23969== by 0x111C4A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==23969== by 0x114E74: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==23969== by 0x114D59: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==23969== by 0x114BFF: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==23969== by 0x114AC1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23969== by 0x1150D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23969== by 0x110C15: main (TestCitations.cpp:18) +==23969== +==23969== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23969== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==23969== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23969== by 0x4934822: ??? +==23969== by 0x493496F: ??? +==23969== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23969== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23969== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23969== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23969== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23969== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23969== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23969== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23969== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23969== by 0x11862B: TestCitations::TestChasteCitation() (TestCitations.hpp:72) +==23969== by 0x118ED8: TestDescription_TestCitations_TestChasteCitation::runTest() (TestCitations.cpp:30) +==23969== by 0x111C4A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==23969== by 0x114E74: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==23969== by 0x114D59: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==23969== by 0x114BFF: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==23969== by 0x114AC1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23969== by 0x1150D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23969== by 0x110C15: main (TestCitations.cpp:18) +==23969== +==23969== Open file descriptor 116: +==23969== +==23969== +==23969== Open file descriptor 113: +==23969== +==23969== +==23969== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCitations_valgrind.txt +==23969== +==23969== +==23969== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23969== +==23969== +==23969== +==23969== HEAP SUMMARY: +==23969== in use at exit: 617,870 bytes in 8,238 blocks +==23969== total heap usage: 45,216 allocs, 36,978 frees, 1,338,328,786 bytes allocated +==23969== +==23969== LEAK SUMMARY: +==23969== definitely lost: 0 bytes in 0 blocks +==23969== indirectly lost: 0 bytes in 0 blocks +==23969== possibly lost: 0 bytes in 0 blocks +==23969== still reachable: 24 bytes in 2 blocks +==23969== suppressed: 617,846 bytes in 8,236 blocks +==23969== Reachable blocks (those to which a pointer was found) are not shown. +==23969== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23969== +==23969== For lists of detected and suppressed errors, rerun with: -s +==23969== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestCodegenPresent_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCodegenPresent_valgrind.txt new file mode 100644 index 000000000..2a354e290 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCodegenPresent_valgrind.txt @@ -0,0 +1,73 @@ +==42484== Memcheck, a memory error detector +==42484== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42484== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42484== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCodegenPresent -malloc_debug -malloc_dump -memory_info +==42484== Parent PID: 23966 +==42484== +==42484== +==42484== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42484== Open file descriptor 12: +==42484== at 0x616907D: pipe (pipe.c:29) +==42484== by 0xAEAD07D: ??? +==42484== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42484== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42484== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42484== by 0x4A23D38: PetscInitialize (pinit.c:924) +==42484== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42484== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42484== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42484== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42484== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42484== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42484== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42484== by 0x10C695: main (TestCodegenPresent.cpp:18) +==42484== +==42484== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42484== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==42484== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42484== by 0x5CB2822: ??? +==42484== by 0x5CB296F: ??? +==42484== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42484== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42484== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42484== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42484== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42484== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42484== by 0x4A23D38: PetscInitialize (pinit.c:924) +==42484== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42484== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42484== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42484== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42484== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42484== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42484== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42484== by 0x10C695: main (TestCodegenPresent.cpp:18) +==42484== +==42484== Open file descriptor 116: +==42484== +==42484== +==42484== Open file descriptor 113: +==42484== +==42484== +==42484== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCodegenPresent_valgrind.txt +==42484== +==42484== +==42484== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42484== +==42484== +==42484== +==42484== HEAP SUMMARY: +==42484== in use at exit: 617,870 bytes in 8,238 blocks +==42484== total heap usage: 44,922 allocs, 36,684 frees, 1,338,160,703 bytes allocated +==42484== +==42484== LEAK SUMMARY: +==42484== definitely lost: 0 bytes in 0 blocks +==42484== indirectly lost: 0 bytes in 0 blocks +==42484== possibly lost: 0 bytes in 0 blocks +==42484== still reachable: 24 bytes in 2 blocks +==42484== suppressed: 617,846 bytes in 8,236 blocks +==42484== Reachable blocks (those to which a pointer was found) are not shown. +==42484== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42484== +==42484== For lists of detected and suppressed errors, rerun with: -s +==42484== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestColumnDataReaderWriter_valgrind.txt b/log-files/2024-10-14_17-51-53/TestColumnDataReaderWriter_valgrind.txt new file mode 100644 index 000000000..b2b7f5377 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestColumnDataReaderWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24219== Memcheck, a memory error detector +==24219== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24219== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24219== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestColumnDataReaderWriter -malloc_debug -malloc_dump -memory_info +==24219== Parent PID: 23966 +==24219== +==24219== +==24219== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24219== Open file descriptor 12: +==24219== at 0x61DC07D: pipe (pipe.c:29) +==24219== by 0xAF2007D: ??? +==24219== by 0x8A2F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24219== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24219== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24219== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24219== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24219== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24219== by 0x11A4DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24219== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24219== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24219== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24219== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24219== by 0x113AF5: main (TestColumnDataReaderWriter.cpp:19) +==24219== +==24219== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24219== at 0x61E0A1C: __open_nocancel (open64_nocancel.c:39) +==24219== by 0x6164BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24219== by 0x5D25822: ??? +==24219== by 0x5D2596F: ??? +==24219== by 0x8AD66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24219== by 0x8AD6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24219== by 0x8A8C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24219== by 0x8A2F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24219== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24219== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24219== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24219== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24219== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24219== by 0x11A4DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24219== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24219== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24219== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24219== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24219== by 0x113AF5: main (TestColumnDataReaderWriter.cpp:19) +==24219== +==24219== Open file descriptor 116: +==24219== +==24219== +==24219== Open file descriptor 113: +==24219== +==24219== +==24219== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestColumnDataReaderWriter_valgrind.txt +==24219== +==24219== +==24219== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24219== +==24219== +==24219== +==24219== HEAP SUMMARY: +==24219== in use at exit: 617,886 bytes in 8,238 blocks +==24219== total heap usage: 61,709 allocs, 53,471 frees, 1,341,174,363 bytes allocated +==24219== +==24219== LEAK SUMMARY: +==24219== definitely lost: 0 bytes in 0 blocks +==24219== indirectly lost: 0 bytes in 0 blocks +==24219== possibly lost: 0 bytes in 0 blocks +==24219== still reachable: 24 bytes in 2 blocks +==24219== suppressed: 617,862 bytes in 8,236 blocks +==24219== Reachable blocks (those to which a pointer was found) are not shown. +==24219== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24219== +==24219== For lists of detected and suppressed errors, rerun with: -s +==24219== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestCombinedOdeSystem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCombinedOdeSystem_valgrind.txt new file mode 100644 index 000000000..713154444 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCombinedOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24927== Memcheck, a memory error detector +==24927== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24927== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24927== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestCombinedOdeSystem -malloc_debug -malloc_dump -memory_info +==24927== Parent PID: 23966 +==24927== +==24927== +==24927== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24927== Open file descriptor 12: +==24927== at 0x4F1007D: pipe (pipe.c:29) +==24927== by 0xB1EE07D: ??? +==24927== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24927== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24927== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24927== by 0x5308D38: PetscInitialize (pinit.c:924) +==24927== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24927== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24927== by 0x11FE4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24927== by 0x11AEED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24927== by 0x11DACC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24927== by 0x11D9C7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24927== by 0x11DFDB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24927== by 0x118A75: main (TestCombinedOdeSystem.cpp:18) +==24927== +==24927== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24927== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39) +==24927== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24927== by 0x4B76822: ??? +==24927== by 0x4B7696F: ??? +==24927== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24927== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24927== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24927== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24927== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24927== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24927== by 0x5308D38: PetscInitialize (pinit.c:924) +==24927== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24927== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24927== by 0x11FE4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24927== by 0x11AEED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24927== by 0x11DACC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24927== by 0x11D9C7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24927== by 0x11DFDB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24927== by 0x118A75: main (TestCombinedOdeSystem.cpp:18) +==24927== +==24927== Open file descriptor 116: +==24927== +==24927== +==24927== Open file descriptor 113: +==24927== +==24927== +==24927== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCombinedOdeSystem_valgrind.txt +==24927== +==24927== +==24927== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24927== +==24927== +==24927== +==24927== HEAP SUMMARY: +==24927== in use at exit: 617,934 bytes in 8,238 blocks +==24927== total heap usage: 46,090 allocs, 37,852 frees, 1,338,258,623 bytes allocated +==24927== +==24927== LEAK SUMMARY: +==24927== definitely lost: 0 bytes in 0 blocks +==24927== indirectly lost: 0 bytes in 0 blocks +==24927== possibly lost: 0 bytes in 0 blocks +==24927== still reachable: 24 bytes in 2 blocks +==24927== suppressed: 617,910 bytes in 8,236 blocks +==24927== Reachable blocks (those to which a pointer was found) are not shown. +==24927== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24927== +==24927== For lists of detected and suppressed errors, rerun with: -s +==24927== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestCommandLineArgumentsTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCommandLineArgumentsTutorial_valgrind.txt new file mode 100644 index 000000000..570bd5c2f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCommandLineArgumentsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==24216== Memcheck, a memory error detector +==24216== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24216== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24216== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCommandLineArgumentsTutorial -malloc_debug -malloc_dump -memory_info +==24216== Parent PID: 23966 +==24216== +==24216== +==24216== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24216== Open file descriptor 12: +==24216== at 0x4CB207D: pipe (pipe.c:29) +==24216== by 0xAEAD07D: ??? +==24216== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24216== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24216== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24216== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24216== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24216== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24216== by 0x112FDA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24216== by 0x10EE73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24216== by 0x111094: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24216== by 0x110F90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24216== by 0x1115A3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24216== by 0x10D675: main (TestCommandLineArgumentsTutorial.cpp:18) +==24216== +==24216== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24216== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24216== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24216== by 0x4934822: ??? +==24216== by 0x493496F: ??? +==24216== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24216== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24216== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24216== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24216== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24216== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24216== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24216== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24216== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24216== by 0x112FDA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24216== by 0x10EE73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24216== by 0x111094: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24216== by 0x110F90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24216== by 0x1115A3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24216== by 0x10D675: main (TestCommandLineArgumentsTutorial.cpp:18) +==24216== +==24216== Open file descriptor 116: +==24216== +==24216== +==24216== Open file descriptor 113: +==24216== +==24216== +==24216== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCommandLineArgumentsTutorial_valgrind.txt +==24216== +==24216== +==24216== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24216== +==24216== +==24216== +==24216== HEAP SUMMARY: +==24216== in use at exit: 617,870 bytes in 8,238 blocks +==24216== total heap usage: 44,944 allocs, 36,706 frees, 1,338,163,373 bytes allocated +==24216== +==24216== LEAK SUMMARY: +==24216== definitely lost: 0 bytes in 0 blocks +==24216== indirectly lost: 0 bytes in 0 blocks +==24216== possibly lost: 0 bytes in 0 blocks +==24216== still reachable: 24 bytes in 2 blocks +==24216== suppressed: 617,846 bytes in 8,236 blocks +==24216== Reachable blocks (those to which a pointer was found) are not shown. +==24216== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24216== +==24216== For lists of detected and suppressed errors, rerun with: -s +==24216== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestCommandLineArguments_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCommandLineArguments_valgrind.txt new file mode 100644 index 000000000..afdcf4b7d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCommandLineArguments_valgrind.txt @@ -0,0 +1,73 @@ +==23970== Memcheck, a memory error detector +==23970== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23970== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23970== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCommandLineArguments -malloc_debug -malloc_dump -memory_info +==23970== Parent PID: 23966 +==23970== +==23970== +==23970== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23970== Open file descriptor 12: +==23970== at 0x4CB207D: pipe (pipe.c:29) +==23970== by 0xAEAD07D: ??? +==23970== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23970== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23970== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23970== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23970== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23970== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23970== by 0x115FD0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23970== by 0x11158D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23970== by 0x114072: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23970== by 0x113F12: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23970== by 0x1145A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23970== by 0x10F9B5: main (TestCommandLineArguments.cpp:19) +==23970== +==23970== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23970== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==23970== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23970== by 0x4934822: ??? +==23970== by 0x493496F: ??? +==23970== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23970== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23970== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23970== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23970== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23970== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23970== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==23970== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23970== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23970== by 0x115FD0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==23970== by 0x11158D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23970== by 0x114072: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23970== by 0x113F12: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23970== by 0x1145A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23970== by 0x10F9B5: main (TestCommandLineArguments.cpp:19) +==23970== +==23970== Open file descriptor 116: +==23970== +==23970== +==23970== Open file descriptor 113: +==23970== +==23970== +==23970== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCommandLineArguments_valgrind.txt +==23970== +==23970== +==23970== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23970== +==23970== +==23970== +==23970== HEAP SUMMARY: +==23970== in use at exit: 617,870 bytes in 8,238 blocks +==23970== total heap usage: 45,104 allocs, 36,866 frees, 1,338,179,640 bytes allocated +==23970== +==23970== LEAK SUMMARY: +==23970== definitely lost: 0 bytes in 0 blocks +==23970== indirectly lost: 0 bytes in 0 blocks +==23970== possibly lost: 0 bytes in 0 blocks +==23970== still reachable: 24 bytes in 2 blocks +==23970== suppressed: 617,846 bytes in 8,236 blocks +==23970== Reachable blocks (those to which a pointer was found) are not shown. +==23970== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23970== +==23970== For lists of detected and suppressed errors, rerun with: -s +==23970== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestCompressibleNonlinearElasticitySolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCompressibleNonlinearElasticitySolver_valgrind.txt new file mode 100644 index 000000000..19140430c --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCompressibleNonlinearElasticitySolver_valgrind.txt @@ -0,0 +1,73 @@ +==25222== Memcheck, a memory error detector +==25222== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25222== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25222== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestCompressibleNonlinearElasticitySolver -malloc_debug -malloc_dump -memory_info +==25222== Parent PID: 23966 +==25222== +==25222== +==25222== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25222== Open file descriptor 12: +==25222== at 0x87A607D: pipe (pipe.c:29) +==25222== by 0x106E907D: ??? +==25222== by 0xBF9A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25222== by 0x7FC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25222== by 0x7F60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25222== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25222== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25222== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25222== by 0x169A90: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25222== by 0x163FD1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25222== by 0x16757C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25222== by 0x16741C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25222== by 0x167AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25222== by 0x161595: main (TestCompressibleNonlinearElasticitySolver.cpp:19) +==25222== +==25222== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25222== at 0x87AAA1C: __open_nocancel (open64_nocancel.c:39) +==25222== by 0x872EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25222== by 0x7EC3822: ??? +==25222== by 0x7EC396F: ??? +==25222== by 0xC03F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25222== by 0xC03F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25222== by 0xBFF5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25222== by 0xBF9A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25222== by 0x7FC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25222== by 0x7F60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25222== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25222== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25222== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25222== by 0x169A90: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25222== by 0x163FD1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25222== by 0x16757C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25222== by 0x16741C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25222== by 0x167AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25222== by 0x161595: main (TestCompressibleNonlinearElasticitySolver.cpp:19) +==25222== +==25222== Open file descriptor 116: +==25222== +==25222== +==25222== Open file descriptor 113: +==25222== +==25222== +==25222== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCompressibleNonlinearElasticitySolver_valgrind.txt +==25222== +==25222== +==25222== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25222== +==25222== +==25222== +==25222== HEAP SUMMARY: +==25222== in use at exit: 618,286 bytes in 8,238 blocks +==25222== total heap usage: 309,160 allocs, 300,922 frees, 1,381,169,250 bytes allocated +==25222== +==25222== LEAK SUMMARY: +==25222== definitely lost: 0 bytes in 0 blocks +==25222== indirectly lost: 0 bytes in 0 blocks +==25222== possibly lost: 0 bytes in 0 blocks +==25222== still reachable: 24 bytes in 2 blocks +==25222== suppressed: 618,262 bytes in 8,236 blocks +==25222== Reachable blocks (those to which a pointer was found) are not shown. +==25222== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25222== +==25222== For lists of detected and suppressed errors, rerun with: -s +==25222== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestConductivityTensors_valgrind.txt b/log-files/2024-10-14_17-51-53/TestConductivityTensors_valgrind.txt new file mode 100644 index 000000000..07e15a179 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestConductivityTensors_valgrind.txt @@ -0,0 +1,73 @@ +==43564== Memcheck, a memory error detector +==43564== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43564== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43564== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestConductivityTensors -malloc_debug -malloc_dump -memory_info +==43564== Parent PID: 23966 +==43564== +==43564== +==43564== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43564== Open file descriptor 12: +==43564== at 0xA68F07D: pipe (pipe.c:29) +==43564== by 0x1433707D: ??? +==43564== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43564== by 0xBD88418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43564== by 0xBD21D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43564== by 0xAA18D38: PetscInitialize (pinit.c:924) +==43564== by 0x9E8F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43564== by 0x9E8F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43564== by 0x1288D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43564== by 0x123B0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43564== by 0x12665E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43564== by 0x1264FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43564== by 0x126B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43564== by 0x121F35: main (TestConductivityTensors.cpp:19) +==43564== +==43564== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43564== at 0xA693A1C: __open_nocancel (open64_nocancel.c:39) +==43564== by 0xA617BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43564== by 0x9EC9822: ??? +==43564== by 0x9EC996F: ??? +==43564== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43564== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43564== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43564== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43564== by 0xBD88418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43564== by 0xBD21D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43564== by 0xAA18D38: PetscInitialize (pinit.c:924) +==43564== by 0x9E8F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43564== by 0x9E8F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43564== by 0x1288D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43564== by 0x123B0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43564== by 0x12665E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43564== by 0x1264FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43564== by 0x126B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43564== by 0x121F35: main (TestConductivityTensors.cpp:19) +==43564== +==43564== Open file descriptor 116: +==43564== +==43564== +==43564== Open file descriptor 113: +==43564== +==43564== +==43564== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConductivityTensors_valgrind.txt +==43564== +==43564== +==43564== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43564== +==43564== +==43564== +==43564== HEAP SUMMARY: +==43564== in use at exit: 618,350 bytes in 8,238 blocks +==43564== total heap usage: 58,721 allocs, 50,483 frees, 1,339,525,151 bytes allocated +==43564== +==43564== LEAK SUMMARY: +==43564== definitely lost: 0 bytes in 0 blocks +==43564== indirectly lost: 0 bytes in 0 blocks +==43564== possibly lost: 0 bytes in 0 blocks +==43564== still reachable: 24 bytes in 2 blocks +==43564== suppressed: 618,326 bytes in 8,236 blocks +==43564== Reachable blocks (those to which a pointer was found) are not shown. +==43564== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43564== +==43564== For lists of detected and suppressed errors, rerun with: -s +==43564== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestConstBoundaryCondition_valgrind.txt b/log-files/2024-10-14_17-51-53/TestConstBoundaryCondition_valgrind.txt new file mode 100644 index 000000000..e056fa49c --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestConstBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==25154== Memcheck, a memory error detector +==25154== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25154== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25154== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestConstBoundaryCondition -malloc_debug -malloc_dump -memory_info +==25154== Parent PID: 23966 +==25154== +==25154== +==25154== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25154== Open file descriptor 12: +==25154== at 0x6CB407D: pipe (pipe.c:29) +==25154== by 0x104E607D: ??? +==25154== by 0xC3264CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25154== by 0x8728418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25154== by 0x86C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25154== by 0x7003D38: PetscInitialize (pinit.c:924) +==25154== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25154== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25154== by 0x111DEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25154== by 0x10DBB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25154== by 0x10FEA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25154== by 0x10FD9D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25154== by 0x1103B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25154== by 0x10C3B5: main (TestConstBoundaryCondition.cpp:18) +==25154== +==25154== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25154== at 0x6CB8A1C: __open_nocancel (open64_nocancel.c:39) +==25154== by 0x6C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25154== by 0x6936822: ??? +==25154== by 0x693696F: ??? +==25154== by 0xC3CD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25154== by 0xC3CD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25154== by 0xC383922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25154== by 0xC3262DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25154== by 0x8728418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25154== by 0x86C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25154== by 0x7003D38: PetscInitialize (pinit.c:924) +==25154== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25154== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25154== by 0x111DEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25154== by 0x10DBB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25154== by 0x10FEA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25154== by 0x10FD9D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25154== by 0x1103B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25154== by 0x10C3B5: main (TestConstBoundaryCondition.cpp:18) +==25154== +==25154== Open file descriptor 116: +==25154== +==25154== +==25154== Open file descriptor 113: +==25154== +==25154== +==25154== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConstBoundaryCondition_valgrind.txt +==25154== +==25154== +==25154== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25154== +==25154== +==25154== +==25154== HEAP SUMMARY: +==25154== in use at exit: 618,270 bytes in 8,238 blocks +==25154== total heap usage: 47,331 allocs, 39,093 frees, 1,338,384,583 bytes allocated +==25154== +==25154== LEAK SUMMARY: +==25154== definitely lost: 0 bytes in 0 blocks +==25154== indirectly lost: 0 bytes in 0 blocks +==25154== possibly lost: 0 bytes in 0 blocks +==25154== still reachable: 24 bytes in 2 blocks +==25154== suppressed: 618,246 bytes in 8,236 blocks +==25154== Reachable blocks (those to which a pointer was found) are not shown. +==25154== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25154== +==25154== For lists of detected and suppressed errors, rerun with: -s +==25154== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt b/log-files/2024-10-14_17-51-53/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt new file mode 100644 index 000000000..b6105f4e7 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25223== Memcheck, a memory error detector +==25223== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25223== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25223== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestContinuumMechanicsNeumannBcsAssembler -malloc_debug -malloc_dump -memory_info +==25223== Parent PID: 23966 +==25223== +==25223== +==25223== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25223== Open file descriptor 12: +==25223== at 0x866F07D: pipe (pipe.c:29) +==25223== by 0x106E907D: ??? +==25223== by 0xC4F54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25223== by 0x8CD6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25223== by 0x8C6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25223== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25223== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25223== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25223== by 0x132A16: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25223== by 0x12DD0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25223== by 0x130686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25223== by 0x130526: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25223== by 0x130BBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25223== by 0x12C135: main (TestContinuumMechanicsNeumannBcsAssembler.cpp:19) +==25223== +==25223== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25223== at 0x8673A1C: __open_nocancel (open64_nocancel.c:39) +==25223== by 0x85F7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25223== by 0x7EC3822: ??? +==25223== by 0x7EC396F: ??? +==25223== by 0xC59A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25223== by 0xC59A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25223== by 0xC550922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25223== by 0xC4F52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25223== by 0x8CD6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25223== by 0x8C6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25223== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25223== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25223== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25223== by 0x132A16: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25223== by 0x12DD0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25223== by 0x130686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25223== by 0x130526: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25223== by 0x130BBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25223== by 0x12C135: main (TestContinuumMechanicsNeumannBcsAssembler.cpp:19) +==25223== +==25223== Open file descriptor 116: +==25223== +==25223== +==25223== Open file descriptor 113: +==25223== +==25223== +==25223== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt +==25223== +==25223== +==25223== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25223== +==25223== +==25223== +==25223== HEAP SUMMARY: +==25223== in use at exit: 618,286 bytes in 8,238 blocks +==25223== total heap usage: 48,485 allocs, 40,247 frees, 1,338,692,369 bytes allocated +==25223== +==25223== LEAK SUMMARY: +==25223== definitely lost: 0 bytes in 0 blocks +==25223== indirectly lost: 0 bytes in 0 blocks +==25223== possibly lost: 0 bytes in 0 blocks +==25223== still reachable: 24 bytes in 2 blocks +==25223== suppressed: 618,262 bytes in 8,236 blocks +==25223== Reachable blocks (those to which a pointer was found) are not shown. +==25223== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25223== +==25223== For lists of detected and suppressed errors, rerun with: -s +==25223== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestContractionModels_valgrind.txt b/log-files/2024-10-14_17-51-53/TestContractionModels_valgrind.txt new file mode 100644 index 000000000..bb8f28b16 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestContractionModels_valgrind.txt @@ -0,0 +1,73 @@ +==43157== Memcheck, a memory error detector +==43157== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43157== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43157== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestContractionModels -malloc_debug -malloc_dump -memory_info +==43157== Parent PID: 23966 +==43157== +==43157== +==43157== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43157== Open file descriptor 12: +==43157== at 0x9DC207D: pipe (pipe.c:29) +==43157== by 0x1433707D: ??? +==43157== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43157== by 0x990E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43157== by 0x98A7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43157== by 0x857BD38: PetscInitialize (pinit.c:924) +==43157== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43157== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43157== by 0x12263F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43157== by 0x11CBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43157== by 0x11F788: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43157== by 0x11F628: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43157== by 0x11FCBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43157== by 0x11AE95: main (TestContractionModels.cpp:19) +==43157== +==43157== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43157== at 0x9DC6A1C: __open_nocancel (open64_nocancel.c:39) +==43157== by 0x9D4ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43157== by 0x980A822: ??? +==43157== by 0x980A96F: ??? +==43157== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43157== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43157== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43157== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43157== by 0x990E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43157== by 0x98A7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43157== by 0x857BD38: PetscInitialize (pinit.c:924) +==43157== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43157== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43157== by 0x12263F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43157== by 0x11CBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43157== by 0x11F788: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43157== by 0x11F628: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43157== by 0x11FCBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43157== by 0x11AE95: main (TestContractionModels.cpp:19) +==43157== +==43157== Open file descriptor 116: +==43157== +==43157== +==43157== Open file descriptor 113: +==43157== +==43157== +==43157== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestContractionModels_valgrind.txt +==43157== +==43157== +==43157== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43157== +==43157== +==43157== +==43157== HEAP SUMMARY: +==43157== in use at exit: 618,279 bytes in 8,234 blocks +==43157== total heap usage: 4,643,675 allocs, 4,635,441 frees, 1,548,567,809 bytes allocated +==43157== +==43157== LEAK SUMMARY: +==43157== definitely lost: 0 bytes in 0 blocks +==43157== indirectly lost: 0 bytes in 0 blocks +==43157== possibly lost: 0 bytes in 0 blocks +==43157== still reachable: 24 bytes in 2 blocks +==43157== suppressed: 618,255 bytes in 8,232 blocks +==43157== Reachable blocks (those to which a pointer was found) are not shown. +==43157== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43157== +==43157== For lists of detected and suppressed errors, rerun with: -s +==43157== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestConvergenceTester_valgrind.txt b/log-files/2024-10-14_17-51-53/TestConvergenceTester_valgrind.txt new file mode 100644 index 000000000..6ce866392 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestConvergenceTester_valgrind.txt @@ -0,0 +1,73 @@ +==41283== Memcheck, a memory error detector +==41283== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41283== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41283== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestConvergenceTester -malloc_debug -malloc_dump -memory_info +==41283== Parent PID: 23966 +==41283== +==41283== +==41283== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41283== Open file descriptor 12: +==41283== at 0xAC5207D: pipe (pipe.c:29) +==41283== by 0x1433707D: ??? +==41283== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41283== by 0xC34D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41283== by 0xC2E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41283== by 0xAFDDD38: PetscInitialize (pinit.c:924) +==41283== by 0xA4521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41283== by 0xA452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41283== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41283== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41283== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41283== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41283== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41283== by 0x11B5F5: main (TestConvergenceTester.cpp:18) +==41283== +==41283== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41283== at 0xAC56A1C: __open_nocancel (open64_nocancel.c:39) +==41283== by 0xABDABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41283== by 0xA48C822: ??? +==41283== by 0xA48C96F: ??? +==41283== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41283== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41283== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41283== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41283== by 0xC34D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41283== by 0xC2E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41283== by 0xAFDDD38: PetscInitialize (pinit.c:924) +==41283== by 0xA4521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41283== by 0xA452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41283== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41283== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41283== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41283== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41283== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41283== by 0x11B5F5: main (TestConvergenceTester.cpp:18) +==41283== +==41283== Open file descriptor 116: +==41283== +==41283== +==41283== Open file descriptor 113: +==41283== +==41283== +==41283== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConvergenceTester_valgrind.txt +==41283== +==41283== +==41283== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41283== +==41283== +==41283== +==41283== HEAP SUMMARY: +==41283== in use at exit: 618,830 bytes in 8,248 blocks +==41283== total heap usage: 1,810,243 allocs, 1,801,995 frees, 1,914,182,755 bytes allocated +==41283== +==41283== LEAK SUMMARY: +==41283== definitely lost: 0 bytes in 0 blocks +==41283== indirectly lost: 0 bytes in 0 blocks +==41283== possibly lost: 0 bytes in 0 blocks +==41283== still reachable: 24 bytes in 2 blocks +==41283== suppressed: 618,806 bytes in 8,246 blocks +==41283== Reachable blocks (those to which a pointer was found) are not shown. +==41283== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41283== +==41283== For lists of detected and suppressed errors, rerun with: -s +==41283== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 121 from 38) diff --git a/log-files/2024-10-14_17-51-53/TestCoupledCableTestProblem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCoupledCableTestProblem_valgrind.txt new file mode 100644 index 000000000..1d19731ec --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCoupledCableTestProblem_valgrind.txt @@ -0,0 +1,73 @@ +==25011== Memcheck, a memory error detector +==25011== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25011== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25011== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestCoupledCableTestProblem -malloc_debug -malloc_dump -memory_info +==25011== Parent PID: 23966 +==25011== +==25011== +==25011== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25011== Open file descriptor 12: +==25011== at 0x84EF07D: pipe (pipe.c:29) +==25011== by 0x104E607D: ??? +==25011== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25011== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25011== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25011== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25011== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25011== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25011== by 0x13CC22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25011== by 0x137D33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25011== by 0x13A8DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25011== by 0x13A7D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25011== by 0x13ADE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25011== by 0x136535: main (TestCoupledCableTestProblem.cpp:18) +==25011== +==25011== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25011== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25011== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25011== by 0x7D43822: ??? +==25011== by 0x7D4396F: ??? +==25011== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25011== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25011== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25011== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25011== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25011== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25011== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25011== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25011== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25011== by 0x13CC22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25011== by 0x137D33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25011== by 0x13A8DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25011== by 0x13A7D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25011== by 0x13ADE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25011== by 0x136535: main (TestCoupledCableTestProblem.cpp:18) +==25011== +==25011== Open file descriptor 116: +==25011== +==25011== +==25011== Open file descriptor 113: +==25011== +==25011== +==25011== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCoupledCableTestProblem_valgrind.txt +==25011== +==25011== +==25011== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25011== +==25011== +==25011== +==25011== HEAP SUMMARY: +==25011== in use at exit: 618,270 bytes in 8,238 blocks +==25011== total heap usage: 501,736 allocs, 493,498 frees, 1,359,093,756 bytes allocated +==25011== +==25011== LEAK SUMMARY: +==25011== definitely lost: 0 bytes in 0 blocks +==25011== indirectly lost: 0 bytes in 0 blocks +==25011== possibly lost: 0 bytes in 0 blocks +==25011== still reachable: 24 bytes in 2 blocks +==25011== suppressed: 618,246 bytes in 8,236 blocks +==25011== Reachable blocks (those to which a pointer was found) are not shown. +==25011== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25011== +==25011== For lists of detected and suppressed errors, rerun with: -s +==25011== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt new file mode 100644 index 000000000..558c132db --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39597== Memcheck, a memory error detector +==39597== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39597== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39597== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial -malloc_debug -malloc_dump -memory_info +==39597== Parent PID: 23966 +==39597== +==39597== +==39597== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39597== Open file descriptor 12: +==39597== at 0x10CFA07D: pipe (pipe.c:29) +==39597== by 0x196BC07D: ??? +==39597== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39597== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39597== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39597== by 0xF292D38: PetscInitialize (pinit.c:924) +==39597== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39597== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39597== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39597== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39597== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39597== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39597== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39597== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) +==39597== +==39597== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39597== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==39597== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39597== by 0xF13E822: ??? +==39597== by 0xF13E96F: ??? +==39597== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39597== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39597== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39597== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39597== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39597== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39597== by 0xF292D38: PetscInitialize (pinit.c:924) +==39597== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39597== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39597== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39597== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39597== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39597== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39597== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39597== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) +==39597== +==39597== Open file descriptor 116: +==39597== +==39597== +==39597== Open file descriptor 113: +==39597== +==39597== +==39597== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt +==39597== +==39597== +==39597== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39597== +==39597== +==39597== +==39597== HEAP SUMMARY: +==39597== in use at exit: 618,366 bytes in 8,239 blocks +==39597== total heap usage: 579,747 allocs, 571,508 frees, 1,651,697,211 bytes allocated +==39597== +==39597== LEAK SUMMARY: +==39597== definitely lost: 0 bytes in 0 blocks +==39597== indirectly lost: 0 bytes in 0 blocks +==39597== possibly lost: 0 bytes in 0 blocks +==39597== still reachable: 56 bytes in 3 blocks +==39597== suppressed: 618,310 bytes in 8,236 blocks +==39597== Reachable blocks (those to which a pointer was found) are not shown. +==39597== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39597== +==39597== For lists of detected and suppressed errors, rerun with: -s +==39597== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt new file mode 100644 index 000000000..4ff480509 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39682== Memcheck, a memory error detector +==39682== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39682== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39682== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellCycleModelTutorial -malloc_debug -malloc_dump -memory_info +==39682== Parent PID: 23966 +==39682== +==39682== +==39682== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39682== Open file descriptor 12: +==39682== at 0x10DE107D: pipe (pipe.c:29) +==39682== by 0x196BC07D: ??? +==39682== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39682== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39682== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39682== by 0xF292D38: PetscInitialize (pinit.c:924) +==39682== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39682== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39682== by 0x2258F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39682== by 0x21F2AB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39682== by 0x222B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39682== by 0x222A01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39682== by 0x223097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39682== by 0x21BBD5: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19) +==39682== +==39682== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39682== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==39682== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39682== by 0xF13E822: ??? +==39682== by 0xF13E96F: ??? +==39682== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39682== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39682== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39682== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39682== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39682== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39682== by 0xF292D38: PetscInitialize (pinit.c:924) +==39682== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39682== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39682== by 0x2258F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39682== by 0x21F2AB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39682== by 0x222B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39682== by 0x222A01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39682== by 0x223097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39682== by 0x21BBD5: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19) +==39682== +==39682== Open file descriptor 116: +==39682== +==39682== +==39682== Open file descriptor 113: +==39682== +==39682== +==39682== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt +==39682== +==39682== +==39682== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39682== +==39682== +==39682== +==39682== HEAP SUMMARY: +==39682== in use at exit: 618,295 bytes in 8,235 blocks +==39682== total heap usage: 8,976,910 allocs, 8,968,675 frees, 2,183,736,242 bytes allocated +==39682== +==39682== LEAK SUMMARY: +==39682== definitely lost: 0 bytes in 0 blocks +==39682== indirectly lost: 0 bytes in 0 blocks +==39682== possibly lost: 0 bytes in 0 blocks +==39682== still reachable: 56 bytes in 3 blocks +==39682== suppressed: 618,239 bytes in 8,232 blocks +==39682== Reachable blocks (those to which a pointer was found) are not shown. +==39682== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39682== +==39682== For lists of detected and suppressed errors, rerun with: -s +==39682== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt new file mode 100644 index 000000000..7f5c56694 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39708== Memcheck, a memory error detector +==39708== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39708== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39708== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellKillerTutorial -malloc_debug -malloc_dump -memory_info +==39708== Parent PID: 23966 +==39708== +==39708== +==39708== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39708== Open file descriptor 12: +==39708== at 0x10DE107D: pipe (pipe.c:29) +==39708== by 0x196BC07D: ??? +==39708== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39708== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39708== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39708== by 0xF292D38: PetscInitialize (pinit.c:924) +==39708== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39708== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39708== by 0x141179: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39708== by 0x13BF3F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39708== by 0x13E6FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39708== by 0x13E5F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39708== by 0x13EC09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39708== by 0x13A735: main (TestCreatingAndUsingANewCellKillerTutorial.cpp:18) +==39708== +==39708== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39708== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==39708== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39708== by 0xF13E822: ??? +==39708== by 0xF13E96F: ??? +==39708== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39708== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39708== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39708== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39708== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39708== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39708== by 0xF292D38: PetscInitialize (pinit.c:924) +==39708== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39708== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39708== by 0x141179: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39708== by 0x13BF3F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39708== by 0x13E6FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39708== by 0x13E5F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39708== by 0x13EC09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39708== by 0x13A735: main (TestCreatingAndUsingANewCellKillerTutorial.cpp:18) +==39708== +==39708== Open file descriptor 116: +==39708== +==39708== +==39708== Open file descriptor 113: +==39708== +==39708== +==39708== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt +==39708== +==39708== +==39708== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39708== +==39708== +==39708== +==39708== HEAP SUMMARY: +==39708== in use at exit: 618,295 bytes in 8,235 blocks +==39708== total heap usage: 2,717,562 allocs, 2,709,327 frees, 1,507,789,018 bytes allocated +==39708== +==39708== LEAK SUMMARY: +==39708== definitely lost: 0 bytes in 0 blocks +==39708== indirectly lost: 0 bytes in 0 blocks +==39708== possibly lost: 0 bytes in 0 blocks +==39708== still reachable: 56 bytes in 3 blocks +==39708== suppressed: 618,239 bytes in 8,232 blocks +==39708== Reachable blocks (those to which a pointer was found) are not shown. +==39708== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39708== +==39708== For lists of detected and suppressed errors, rerun with: -s +==39708== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt new file mode 100644 index 000000000..a4ddbb694 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39717== Memcheck, a memory error detector +==39717== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39717== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39717== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellMutationStateTutorial -malloc_debug -malloc_dump -memory_info +==39717== Parent PID: 23966 +==39717== +==39717== +==39717== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39717== Open file descriptor 12: +==39717== at 0x10CFA07D: pipe (pipe.c:29) +==39717== by 0x196BC07D: ??? +==39717== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39717== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39717== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39717== by 0xF292D38: PetscInitialize (pinit.c:924) +==39717== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39717== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39717== by 0x149987: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39717== by 0x1442D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39717== by 0x146FD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39717== by 0x146E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39717== by 0x147509: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39717== by 0x1426F5: main (TestCreatingAndUsingANewCellMutationStateTutorial.cpp:19) +==39717== +==39717== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39717== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==39717== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39717== by 0xF13E822: ??? +==39717== by 0xF13E96F: ??? +==39717== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39717== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39717== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39717== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39717== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39717== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39717== by 0xF292D38: PetscInitialize (pinit.c:924) +==39717== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39717== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39717== by 0x149987: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39717== by 0x1442D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39717== by 0x146FD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39717== by 0x146E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39717== by 0x147509: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39717== by 0x1426F5: main (TestCreatingAndUsingANewCellMutationStateTutorial.cpp:19) +==39717== +==39717== Open file descriptor 116: +==39717== +==39717== +==39717== Open file descriptor 113: +==39717== +==39717== +==39717== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt +==39717== +==39717== +==39717== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39717== +==39717== +==39717== +==39717== HEAP SUMMARY: +==39717== in use at exit: 618,295 bytes in 8,235 blocks +==39717== total heap usage: 4,262,896 allocs, 4,254,661 frees, 1,898,477,050 bytes allocated +==39717== +==39717== LEAK SUMMARY: +==39717== definitely lost: 0 bytes in 0 blocks +==39717== indirectly lost: 0 bytes in 0 blocks +==39717== possibly lost: 0 bytes in 0 blocks +==39717== still reachable: 56 bytes in 3 blocks +==39717== suppressed: 618,239 bytes in 8,232 blocks +==39717== Reachable blocks (those to which a pointer was found) are not shown. +==39717== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39717== +==39717== For lists of detected and suppressed errors, rerun with: -s +==39717== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt new file mode 100644 index 000000000..108b60ab1 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39848== Memcheck, a memory error detector +==39848== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39848== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39848== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial -malloc_debug -malloc_dump -memory_info +==39848== Parent PID: 23966 +==39848== +==39848== +==39848== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39848== Open file descriptor 12: +==39848== at 0x10CFA07D: pipe (pipe.c:29) +==39848== by 0x196BC07D: ??? +==39848== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39848== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39848== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39848== by 0xF292D38: PetscInitialize (pinit.c:924) +==39848== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39848== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39848== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39848== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39848== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39848== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39848== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39848== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) +==39848== +==39848== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39848== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==39848== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39848== by 0xF13E822: ??? +==39848== by 0xF13E96F: ??? +==39848== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39848== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39848== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39848== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39848== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39848== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39848== by 0xF292D38: PetscInitialize (pinit.c:924) +==39848== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39848== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39848== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39848== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39848== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39848== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39848== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39848== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) +==39848== +==39848== Open file descriptor 116: +==39848== +==39848== +==39848== Open file descriptor 113: +==39848== +==39848== +==39848== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt +==39848== +==39848== +==39848== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39848== +==39848== +==39848== +==39848== HEAP SUMMARY: +==39848== in use at exit: 618,366 bytes in 8,239 blocks +==39848== total heap usage: 426,445 allocs, 418,206 frees, 1,393,460,938 bytes allocated +==39848== +==39848== LEAK SUMMARY: +==39848== definitely lost: 0 bytes in 0 blocks +==39848== indirectly lost: 0 bytes in 0 blocks +==39848== possibly lost: 0 bytes in 0 blocks +==39848== still reachable: 56 bytes in 3 blocks +==39848== suppressed: 618,310 bytes in 8,236 blocks +==39848== Reachable blocks (those to which a pointer was found) are not shown. +==39848== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39848== +==39848== For lists of detected and suppressed errors, rerun with: -s +==39848== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt new file mode 100644 index 000000000..6dd72db6d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39876== Memcheck, a memory error detector +==39876== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39876== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39876== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellPropertyTutorial -malloc_debug -malloc_dump -memory_info +==39876== Parent PID: 23966 +==39876== +==39876== +==39876== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39876== Open file descriptor 12: +==39876== at 0x10CFA07D: pipe (pipe.c:29) +==39876== by 0x196BC07D: ??? +==39876== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39876== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39876== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39876== by 0xF292D38: PetscInitialize (pinit.c:924) +==39876== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39876== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39876== by 0x1502FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39876== by 0x14A5F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39876== by 0x14D664: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39876== by 0x14D504: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39876== by 0x14DB9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39876== by 0x148A15: main (TestCreatingAndUsingANewCellPropertyTutorial.cpp:19) +==39876== +==39876== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39876== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==39876== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39876== by 0xF13E822: ??? +==39876== by 0xF13E96F: ??? +==39876== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39876== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39876== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39876== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39876== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39876== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39876== by 0xF292D38: PetscInitialize (pinit.c:924) +==39876== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39876== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39876== by 0x1502FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39876== by 0x14A5F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39876== by 0x14D664: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39876== by 0x14D504: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39876== by 0x14DB9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39876== by 0x148A15: main (TestCreatingAndUsingANewCellPropertyTutorial.cpp:19) +==39876== +==39876== Open file descriptor 116: +==39876== +==39876== +==39876== Open file descriptor 113: +==39876== +==39876== +==39876== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt +==39876== +==39876== +==39876== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39876== +==39876== +==39876== +==39876== HEAP SUMMARY: +==39876== in use at exit: 618,295 bytes in 8,235 blocks +==39876== total heap usage: 2,617,264 allocs, 2,609,029 frees, 1,556,745,604 bytes allocated +==39876== +==39876== LEAK SUMMARY: +==39876== definitely lost: 0 bytes in 0 blocks +==39876== indirectly lost: 0 bytes in 0 blocks +==39876== possibly lost: 0 bytes in 0 blocks +==39876== still reachable: 56 bytes in 3 blocks +==39876== suppressed: 618,239 bytes in 8,232 blocks +==39876== Reachable blocks (those to which a pointer was found) are not shown. +==39876== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39876== +==39876== For lists of detected and suppressed errors, rerun with: -s +==39876== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewForceTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewForceTutorial_valgrind.txt new file mode 100644 index 000000000..d7a86a0e4 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewForceTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39877== Memcheck, a memory error detector +==39877== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39877== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39877== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewForceTutorial -malloc_debug -malloc_dump -memory_info +==39877== Parent PID: 23966 +==39877== +==39877== +==39877== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39877== Open file descriptor 12: +==39877== at 0x10DE107D: pipe (pipe.c:29) +==39877== by 0x196BC07D: ??? +==39877== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39877== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39877== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39877== by 0xF292D38: PetscInitialize (pinit.c:924) +==39877== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39877== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39877== by 0x14368F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39877== by 0x13E09F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39877== by 0x140942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39877== by 0x14083D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39877== by 0x140E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39877== by 0x13C895: main (TestCreatingAndUsingANewForceTutorial.cpp:18) +==39877== +==39877== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39877== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==39877== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39877== by 0xF13E822: ??? +==39877== by 0xF13E96F: ??? +==39877== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39877== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39877== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39877== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39877== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39877== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39877== by 0xF292D38: PetscInitialize (pinit.c:924) +==39877== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39877== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39877== by 0x14368F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39877== by 0x13E09F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39877== by 0x140942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39877== by 0x14083D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39877== by 0x140E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39877== by 0x13C895: main (TestCreatingAndUsingANewForceTutorial.cpp:18) +==39877== +==39877== Open file descriptor 116: +==39877== +==39877== +==39877== Open file descriptor 113: +==39877== +==39877== +==39877== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewForceTutorial_valgrind.txt +==39877== +==39877== +==39877== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39877== +==39877== +==39877== +==39877== HEAP SUMMARY: +==39877== in use at exit: 618,366 bytes in 8,239 blocks +==39877== total heap usage: 681,546 allocs, 673,307 frees, 1,549,479,086 bytes allocated +==39877== +==39877== LEAK SUMMARY: +==39877== definitely lost: 0 bytes in 0 blocks +==39877== indirectly lost: 0 bytes in 0 blocks +==39877== possibly lost: 0 bytes in 0 blocks +==39877== still reachable: 56 bytes in 3 blocks +==39877== suppressed: 618,310 bytes in 8,236 blocks +==39877== Reachable blocks (those to which a pointer was found) are not shown. +==39877== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39877== +==39877== For lists of detected and suppressed errors, rerun with: -s +==39877== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt new file mode 100644 index 000000000..5224a2c73 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39916== Memcheck, a memory error detector +==39916== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39916== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39916== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewSrnModelTutorial -malloc_debug -malloc_dump -memory_info +==39916== Parent PID: 23966 +==39916== +==39916== +==39916== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39916== Open file descriptor 12: +==39916== at 0x1102307D: pipe (pipe.c:29) +==39916== by 0x196BD07D: ??? +==39916== by 0x14C6C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39916== by 0x10844418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39916== by 0x107DDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39916== by 0xF4D4D38: PetscInitialize (pinit.c:924) +==39916== by 0xF3461D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39916== by 0xF346227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39916== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39916== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39916== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39916== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39916== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39916== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) +==39916== +==39916== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39916== at 0x11027A1C: __open_nocancel (open64_nocancel.c:39) +==39916== by 0x10FABBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39916== by 0xF380822: ??? +==39916== by 0xF38096F: ??? +==39916== by 0x14D116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39916== by 0x14D11938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39916== by 0x14CC7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39916== by 0x14C6C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39916== by 0x10844418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39916== by 0x107DDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39916== by 0xF4D4D38: PetscInitialize (pinit.c:924) +==39916== by 0xF3461D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39916== by 0xF346227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39916== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39916== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39916== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39916== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39916== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39916== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) +==39916== +==39916== Open file descriptor 116: +==39916== +==39916== +==39916== Open file descriptor 113: +==39916== +==39916== +==39916== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt +==39916== +==39916== +==39916== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39916== +==39916== +==39916== +==39916== HEAP SUMMARY: +==39916== in use at exit: 618,295 bytes in 8,235 blocks +==39916== total heap usage: 3,817,499 allocs, 3,809,264 frees, 1,509,499,705 bytes allocated +==39916== +==39916== LEAK SUMMARY: +==39916== definitely lost: 0 bytes in 0 blocks +==39916== indirectly lost: 0 bytes in 0 blocks +==39916== possibly lost: 0 bytes in 0 blocks +==39916== still reachable: 56 bytes in 3 blocks +==39916== suppressed: 618,239 bytes in 8,232 blocks +==39916== Reachable blocks (those to which a pointer was found) are not shown. +==39916== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39916== +==39916== For lists of detected and suppressed errors, rerun with: -s +==39916== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt new file mode 100644 index 000000000..533cfd93d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39938== Memcheck, a memory error detector +==39938== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39938== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39938== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingNewCellBasedWritersTutorial -malloc_debug -malloc_dump -memory_info +==39938== Parent PID: 23966 +==39938== +==39938== +==39938== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39938== Open file descriptor 12: +==39938== at 0xF84307D: pipe (pipe.c:29) +==39938== by 0x196BC07D: ??? +==39938== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39938== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39938== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39938== by 0x1012FD38: PetscInitialize (pinit.c:924) +==39938== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39938== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39938== by 0x1B8DC8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39938== by 0x1B2CFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39938== by 0x1B669A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39938== by 0x1B6596: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39938== by 0x1B6BA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39938== by 0x1B14F5: main (TestCreatingAndUsingNewCellBasedWritersTutorial.cpp:18) +==39938== +==39938== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39938== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==39938== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39938== by 0xF13E822: ??? +==39938== by 0xF13E96F: ??? +==39938== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39938== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39938== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39938== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39938== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39938== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39938== by 0x1012FD38: PetscInitialize (pinit.c:924) +==39938== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39938== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39938== by 0x1B8DC8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39938== by 0x1B2CFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39938== by 0x1B669A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39938== by 0x1B6596: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39938== by 0x1B6BA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39938== by 0x1B14F5: main (TestCreatingAndUsingNewCellBasedWritersTutorial.cpp:18) +==39938== +==39938== Open file descriptor 116: +==39938== +==39938== +==39938== Open file descriptor 113: +==39938== +==39938== +==39938== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt +==39938== +==39938== +==39938== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39938== +==39938== +==39938== +==39938== HEAP SUMMARY: +==39938== in use at exit: 618,295 bytes in 8,235 blocks +==39938== total heap usage: 2,449,558 allocs, 2,441,323 frees, 1,578,043,295 bytes allocated +==39938== +==39938== LEAK SUMMARY: +==39938== definitely lost: 0 bytes in 0 blocks +==39938== indirectly lost: 0 bytes in 0 blocks +==39938== possibly lost: 0 bytes in 0 blocks +==39938== still reachable: 56 bytes in 3 blocks +==39938== suppressed: 618,239 bytes in 8,232 blocks +==39938== Reachable blocks (those to which a pointer was found) are not shown. +==39938== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39938== +==39938== For lists of detected and suppressed errors, rerun with: -s +==39938== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestCryptCellsGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCryptCellsGenerator_valgrind.txt new file mode 100644 index 000000000..9e3d69b71 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCryptCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==40217== Memcheck, a memory error detector +==40217== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40217== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40217== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptCellsGenerator -malloc_debug -malloc_dump -memory_info +==40217== Parent PID: 23966 +==40217== +==40217== +==40217== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40217== Open file descriptor 12: +==40217== at 0x1257807D: pipe (pipe.c:29) +==40217== by 0x1B37E07D: ??? +==40217== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40217== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40217== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40217== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40217== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40217== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40217== by 0x1222A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40217== by 0x11D653: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40217== by 0x11FD06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40217== by 0x11FC01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40217== by 0x120215: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40217== by 0x11BE55: main (TestCryptCellsGenerator.cpp:18) +==40217== +==40217== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40217== at 0x1257CA1C: __open_nocancel (open64_nocancel.c:39) +==40217== by 0x12500BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40217== by 0x11D7C822: ??? +==40217== by 0x11D7C96F: ??? +==40217== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40217== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40217== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40217== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40217== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40217== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40217== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40217== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40217== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40217== by 0x1222A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40217== by 0x11D653: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40217== by 0x11FD06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40217== by 0x11FC01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40217== by 0x120215: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40217== by 0x11BE55: main (TestCryptCellsGenerator.cpp:18) +==40217== +==40217== Open file descriptor 116: +==40217== +==40217== +==40217== Open file descriptor 113: +==40217== +==40217== +==40217== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptCellsGenerator_valgrind.txt +==40217== +==40217== +==40217== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40217== +==40217== +==40217== +==40217== HEAP SUMMARY: +==40217== in use at exit: 618,510 bytes in 8,240 blocks +==40217== total heap usage: 87,338 allocs, 79,098 frees, 1,342,272,000 bytes allocated +==40217== +==40217== LEAK SUMMARY: +==40217== definitely lost: 0 bytes in 0 blocks +==40217== indirectly lost: 0 bytes in 0 blocks +==40217== possibly lost: 0 bytes in 0 blocks +==40217== still reachable: 184 bytes in 4 blocks +==40217== suppressed: 618,326 bytes in 8,236 blocks +==40217== Reachable blocks (those to which a pointer was found) are not shown. +==40217== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40217== +==40217== For lists of detected and suppressed errors, rerun with: -s +==40217== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCryptDivisionRules_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCryptDivisionRules_valgrind.txt new file mode 100644 index 000000000..392e3c94d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCryptDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==40421== Memcheck, a memory error detector +==40421== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40421== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40421== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptDivisionRules -malloc_debug -malloc_dump -memory_info +==40421== Parent PID: 23966 +==40421== +==40421== +==40421== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40421== Open file descriptor 12: +==40421== at 0x125BA07D: pipe (pipe.c:29) +==40421== by 0x1B37E07D: ??? +==40421== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40421== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40421== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40421== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40421== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40421== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40421== by 0x15D2DD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40421== by 0x15795D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40421== by 0x15A6A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40421== by 0x15A542: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40421== by 0x15ABD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40421== by 0x155D85: main (TestCryptDivisionRules.cpp:19) +==40421== +==40421== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40421== at 0x125BEA1C: __open_nocancel (open64_nocancel.c:39) +==40421== by 0x12542BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40421== by 0x109FE822: ??? +==40421== by 0x109FE96F: ??? +==40421== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40421== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40421== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40421== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40421== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40421== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40421== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40421== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40421== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40421== by 0x15D2DD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40421== by 0x15795D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40421== by 0x15A6A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40421== by 0x15A542: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40421== by 0x15ABD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40421== by 0x155D85: main (TestCryptDivisionRules.cpp:19) +==40421== +==40421== Open file descriptor 116: +==40421== +==40421== +==40421== Open file descriptor 113: +==40421== +==40421== +==40421== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptDivisionRules_valgrind.txt +==40421== +==40421== +==40421== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40421== +==40421== +==40421== +==40421== HEAP SUMMARY: +==40421== in use at exit: 618,398 bytes in 8,240 blocks +==40421== total heap usage: 56,685 allocs, 48,445 frees, 1,339,375,052 bytes allocated +==40421== +==40421== LEAK SUMMARY: +==40421== definitely lost: 0 bytes in 0 blocks +==40421== indirectly lost: 0 bytes in 0 blocks +==40421== possibly lost: 0 bytes in 0 blocks +==40421== still reachable: 72 bytes in 4 blocks +==40421== suppressed: 618,326 bytes in 8,236 blocks +==40421== Reachable blocks (those to which a pointer was found) are not shown. +==40421== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40421== +==40421== For lists of detected and suppressed errors, rerun with: -s +==40421== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCryptProjectionForce_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCryptProjectionForce_valgrind.txt new file mode 100644 index 000000000..e4fd22a62 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCryptProjectionForce_valgrind.txt @@ -0,0 +1,73 @@ +==40322== Memcheck, a memory error detector +==40322== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40322== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40322== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptProjectionForce -malloc_debug -malloc_dump -memory_info +==40322== Parent PID: 23966 +==40322== +==40322== +==40322== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40322== Open file descriptor 12: +==40322== at 0x111EC07D: pipe (pipe.c:29) +==40322== by 0x1B37D07D: ??? +==40322== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40322== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40322== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40322== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40322== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40322== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40322== by 0x162A3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40322== by 0x15AE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40322== by 0x15DF5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40322== by 0x15DDFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40322== by 0x15E491: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40322== by 0x159295: main (TestCryptProjectionForce.cpp:19) +==40322== +==40322== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40322== at 0x111F0A1C: __open_nocancel (open64_nocancel.c:39) +==40322== by 0x11174BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40322== by 0x109FE822: ??? +==40322== by 0x109FE96F: ??? +==40322== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40322== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40322== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40322== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40322== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40322== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40322== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40322== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40322== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40322== by 0x162A3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40322== by 0x15AE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40322== by 0x15DF5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40322== by 0x15DDFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40322== by 0x15E491: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40322== by 0x159295: main (TestCryptProjectionForce.cpp:19) +==40322== +==40322== Open file descriptor 116: +==40322== +==40322== +==40322== Open file descriptor 113: +==40322== +==40322== +==40322== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptProjectionForce_valgrind.txt +==40322== +==40322== +==40322== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40322== +==40322== +==40322== +==40322== HEAP SUMMARY: +==40322== in use at exit: 618,462 bytes in 8,240 blocks +==40322== total heap usage: 88,288 allocs, 80,048 frees, 1,341,616,502 bytes allocated +==40322== +==40322== LEAK SUMMARY: +==40322== definitely lost: 0 bytes in 0 blocks +==40322== indirectly lost: 0 bytes in 0 blocks +==40322== possibly lost: 0 bytes in 0 blocks +==40322== still reachable: 136 bytes in 4 blocks +==40322== suppressed: 618,326 bytes in 8,236 blocks +==40322== Reachable blocks (those to which a pointer was found) are not shown. +==40322== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40322== +==40322== For lists of detected and suppressed errors, rerun with: -s +==40322== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCryptProjectionStatistics_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCryptProjectionStatistics_valgrind.txt new file mode 100644 index 000000000..a603fa8a9 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCryptProjectionStatistics_valgrind.txt @@ -0,0 +1,73 @@ +==40710== Memcheck, a memory error detector +==40710== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40710== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40710== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptProjectionStatistics -malloc_debug -malloc_dump -memory_info +==40710== Parent PID: 23966 +==40710== +==40710== +==40710== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40710== Open file descriptor 12: +==40710== at 0x1265F07D: pipe (pipe.c:29) +==40710== by 0x1B37E07D: ??? +==40710== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40710== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40710== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40710== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40710== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40710== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40710== by 0x128443: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40710== by 0x123753: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40710== by 0x125C6C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40710== by 0x125B67: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40710== by 0x12617B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40710== by 0x121F55: main (TestCryptProjectionStatistics.cpp:18) +==40710== +==40710== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40710== at 0x12663A1C: __open_nocancel (open64_nocancel.c:39) +==40710== by 0x125E7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40710== by 0x11D7C822: ??? +==40710== by 0x11D7C96F: ??? +==40710== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40710== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40710== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40710== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40710== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40710== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40710== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40710== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40710== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40710== by 0x128443: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40710== by 0x123753: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40710== by 0x125C6C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40710== by 0x125B67: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40710== by 0x12617B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40710== by 0x121F55: main (TestCryptProjectionStatistics.cpp:18) +==40710== +==40710== Open file descriptor 116: +==40710== +==40710== +==40710== Open file descriptor 113: +==40710== +==40710== +==40710== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptProjectionStatistics_valgrind.txt +==40710== +==40710== +==40710== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40710== +==40710== +==40710== +==40710== HEAP SUMMARY: +==40710== in use at exit: 618,382 bytes in 8,239 blocks +==40710== total heap usage: 1,083,856 allocs, 1,075,617 frees, 1,401,239,273 bytes allocated +==40710== +==40710== LEAK SUMMARY: +==40710== definitely lost: 0 bytes in 0 blocks +==40710== indirectly lost: 0 bytes in 0 blocks +==40710== possibly lost: 0 bytes in 0 blocks +==40710== still reachable: 56 bytes in 3 blocks +==40710== suppressed: 618,326 bytes in 8,236 blocks +==40710== Reachable blocks (those to which a pointer was found) are not shown. +==40710== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40710== +==40710== For lists of detected and suppressed errors, rerun with: -s +==40710== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCryptSimulation1d_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCryptSimulation1d_valgrind.txt new file mode 100644 index 000000000..4f5678d9a --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCryptSimulation1d_valgrind.txt @@ -0,0 +1,73 @@ +==40470== Memcheck, a memory error detector +==40470== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40470== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40470== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation1d -malloc_debug -malloc_dump -memory_info +==40470== Parent PID: 23966 +==40470== +==40470== +==40470== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40470== Open file descriptor 12: +==40470== at 0x125BA07D: pipe (pipe.c:29) +==40470== by 0x1B37E07D: ??? +==40470== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40470== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40470== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40470== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40470== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40470== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40470== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40470== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40470== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40470== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40470== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40470== by 0x21B395: main (TestCryptSimulation1d.cpp:18) +==40470== +==40470== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40470== at 0x125BEA1C: __open_nocancel (open64_nocancel.c:39) +==40470== by 0x12542BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40470== by 0x109FE822: ??? +==40470== by 0x109FE96F: ??? +==40470== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40470== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40470== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40470== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40470== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40470== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40470== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40470== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40470== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40470== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40470== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40470== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40470== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40470== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40470== by 0x21B395: main (TestCryptSimulation1d.cpp:18) +==40470== +==40470== Open file descriptor 116: +==40470== +==40470== +==40470== Open file descriptor 113: +==40470== +==40470== +==40470== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation1d_valgrind.txt +==40470== +==40470== +==40470== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40470== +==40470== +==40470== +==40470== HEAP SUMMARY: +==40470== in use at exit: 618,311 bytes in 8,235 blocks +==40470== total heap usage: 4,119,322 allocs, 4,111,087 frees, 1,972,573,261 bytes allocated +==40470== +==40470== LEAK SUMMARY: +==40470== definitely lost: 0 bytes in 0 blocks +==40470== indirectly lost: 0 bytes in 0 blocks +==40470== possibly lost: 0 bytes in 0 blocks +==40470== still reachable: 56 bytes in 3 blocks +==40470== suppressed: 618,255 bytes in 8,232 blocks +==40470== Reachable blocks (those to which a pointer was found) are not shown. +==40470== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40470== +==40470== For lists of detected and suppressed errors, rerun with: -s +==40470== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..0412c96c7 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==40517== Memcheck, a memory error detector +==40517== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40517== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40517== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==40517== Parent PID: 23966 +==40517== +==40517== +==40517== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40517== Open file descriptor 12: +==40517== at 0x111EC07D: pipe (pipe.c:29) +==40517== by 0x1B37D07D: ??? +==40517== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40517== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40517== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40517== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40517== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40517== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40517== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40517== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40517== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40517== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40517== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40517== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) +==40517== +==40517== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40517== at 0x111F0A1C: __open_nocancel (open64_nocancel.c:39) +==40517== by 0x11174BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40517== by 0x109FE822: ??? +==40517== by 0x109FE96F: ??? +==40517== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40517== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40517== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40517== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40517== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40517== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40517== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40517== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40517== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40517== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40517== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40517== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40517== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40517== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40517== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) +==40517== +==40517== Open file descriptor 116: +==40517== +==40517== +==40517== Open file descriptor 113: +==40517== +==40517== +==40517== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt +==40517== +==40517== +==40517== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40517== +==40517== +==40517== +==40517== HEAP SUMMARY: +==40517== in use at exit: 618,311 bytes in 8,235 blocks +==40517== total heap usage: 6,320,398 allocs, 6,312,163 frees, 2,056,765,597 bytes allocated +==40517== +==40517== LEAK SUMMARY: +==40517== definitely lost: 0 bytes in 0 blocks +==40517== indirectly lost: 0 bytes in 0 blocks +==40517== possibly lost: 0 bytes in 0 blocks +==40517== still reachable: 56 bytes in 3 blocks +==40517== suppressed: 618,255 bytes in 8,232 blocks +==40517== Reachable blocks (those to which a pointer was found) are not shown. +==40517== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40517== +==40517== For lists of detected and suppressed errors, rerun with: -s +==40517== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..745278eaa --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==40550== Memcheck, a memory error detector +==40550== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40550== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40550== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==40550== Parent PID: 23966 +==40550== +==40550== +==40550== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40550== Open file descriptor 12: +==40550== at 0x125BA07D: pipe (pipe.c:29) +==40550== by 0x1B37E07D: ??? +==40550== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40550== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40550== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40550== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40550== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40550== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40550== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40550== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40550== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40550== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40550== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40550== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) +==40550== +==40550== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40550== at 0x125BEA1C: __open_nocancel (open64_nocancel.c:39) +==40550== by 0x12542BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40550== by 0x109FE822: ??? +==40550== by 0x109FE96F: ??? +==40550== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40550== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40550== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40550== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40550== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40550== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40550== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40550== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40550== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40550== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40550== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40550== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40550== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40550== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40550== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) +==40550== +==40550== Open file descriptor 116: +==40550== +==40550== +==40550== Open file descriptor 113: +==40550== +==40550== +==40550== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt +==40550== +==40550== +==40550== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40550== +==40550== +==40550== +==40550== HEAP SUMMARY: +==40550== in use at exit: 618,311 bytes in 8,235 blocks +==40550== total heap usage: 3,713,953 allocs, 3,705,718 frees, 1,620,332,208 bytes allocated +==40550== +==40550== LEAK SUMMARY: +==40550== definitely lost: 0 bytes in 0 blocks +==40550== indirectly lost: 0 bytes in 0 blocks +==40550== possibly lost: 0 bytes in 0 blocks +==40550== still reachable: 56 bytes in 3 blocks +==40550== suppressed: 618,255 bytes in 8,232 blocks +==40550== Reachable blocks (those to which a pointer was found) are not shown. +==40550== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40550== +==40550== For lists of detected and suppressed errors, rerun with: -s +==40550== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestCryptSimulationBoundaryCondition_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCryptSimulationBoundaryCondition_valgrind.txt new file mode 100644 index 000000000..4fd8fed3a --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCryptSimulationBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==40422== Memcheck, a memory error detector +==40422== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40422== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40422== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulationBoundaryCondition -malloc_debug -malloc_dump -memory_info +==40422== Parent PID: 23966 +==40422== +==40422== +==40422== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40422== Open file descriptor 12: +==40422== at 0x125BA07D: pipe (pipe.c:29) +==40422== by 0x1B37E07D: ??? +==40422== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40422== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40422== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40422== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40422== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40422== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40422== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40422== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40422== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40422== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40422== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40422== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) +==40422== +==40422== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40422== at 0x125BEA1C: __open_nocancel (open64_nocancel.c:39) +==40422== by 0x12542BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40422== by 0x109FE822: ??? +==40422== by 0x109FE96F: ??? +==40422== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40422== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40422== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40422== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40422== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40422== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40422== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40422== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40422== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40422== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40422== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40422== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40422== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40422== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40422== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) +==40422== +==40422== Open file descriptor 116: +==40422== +==40422== +==40422== Open file descriptor 113: +==40422== +==40422== +==40422== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulationBoundaryCondition_valgrind.txt +==40422== +==40422== +==40422== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40422== +==40422== +==40422== +==40422== HEAP SUMMARY: +==40422== in use at exit: 618,462 bytes in 8,240 blocks +==40422== total heap usage: 70,046 allocs, 61,806 frees, 1,343,020,896 bytes allocated +==40422== +==40422== LEAK SUMMARY: +==40422== definitely lost: 0 bytes in 0 blocks +==40422== indirectly lost: 0 bytes in 0 blocks +==40422== possibly lost: 0 bytes in 0 blocks +==40422== still reachable: 136 bytes in 4 blocks +==40422== suppressed: 618,326 bytes in 8,236 blocks +==40422== Reachable blocks (those to which a pointer was found) are not shown. +==40422== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40422== +==40422== For lists of detected and suppressed errors, rerun with: -s +==40422== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestCryptStatistics_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCryptStatistics_valgrind.txt new file mode 100644 index 000000000..ecd060de8 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCryptStatistics_valgrind.txt @@ -0,0 +1,73 @@ +==40773== Memcheck, a memory error detector +==40773== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40773== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40773== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info +==40773== Parent PID: 23966 +==40773== +==40773== +==40773== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40773== Open file descriptor 12: +==40773== at 0x1271407D: pipe (pipe.c:29) +==40773== by 0x1B37E07D: ??? +==40773== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40773== by 0x11F35418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40773== by 0x11ECED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40773== by 0x10BC5D38: PetscInitialize (pinit.c:924) +==40773== by 0x10A371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40773== by 0x10A37227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40773== by 0x1BB797: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40773== by 0x1B35DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40773== by 0x1B6DC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40773== by 0x1B6CBD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40773== by 0x1B72D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40773== by 0x1B1DD5: main (TestCryptStatistics.cpp:18) +==40773== +==40773== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40773== at 0x12718A1C: __open_nocancel (open64_nocancel.c:39) +==40773== by 0x1269CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40773== by 0x10A71822: ??? +==40773== by 0x10A7196F: ??? +==40773== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40773== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40773== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40773== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40773== by 0x11F35418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40773== by 0x11ECED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40773== by 0x10BC5D38: PetscInitialize (pinit.c:924) +==40773== by 0x10A371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40773== by 0x10A37227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40773== by 0x1BB797: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40773== by 0x1B35DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40773== by 0x1B6DC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40773== by 0x1B6CBD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40773== by 0x1B72D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40773== by 0x1B1DD5: main (TestCryptStatistics.cpp:18) +==40773== +==40773== Open file descriptor 116: +==40773== +==40773== +==40773== Open file descriptor 113: +==40773== +==40773== +==40773== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptStatistics_valgrind.txt +==40773== +==40773== +==40773== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40773== +==40773== +==40773== +==40773== HEAP SUMMARY: +==40773== in use at exit: 618,279 bytes in 8,234 blocks +==40773== total heap usage: 1,798,764 allocs, 1,790,530 frees, 1,443,892,044 bytes allocated +==40773== +==40773== LEAK SUMMARY: +==40773== definitely lost: 0 bytes in 0 blocks +==40773== indirectly lost: 0 bytes in 0 blocks +==40773== possibly lost: 0 bytes in 0 blocks +==40773== still reachable: 24 bytes in 2 blocks +==40773== suppressed: 618,255 bytes in 8,232 blocks +==40773== Reachable blocks (those to which a pointer was found) are not shown. +==40773== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40773== +==40773== For lists of detected and suppressed errors, rerun with: -s +==40773== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestCvodeAdaptor_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCvodeAdaptor_valgrind.txt new file mode 100644 index 000000000..e952b033c --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCvodeAdaptor_valgrind.txt @@ -0,0 +1,73 @@ +==24929== Memcheck, a memory error detector +==24929== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24929== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24929== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestCvodeAdaptor -malloc_debug -malloc_dump -memory_info +==24929== Parent PID: 23966 +==24929== +==24929== +==24929== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24929== Open file descriptor 12: +==24929== at 0x4F5207D: pipe (pipe.c:29) +==24929== by 0xB1EE07D: ??? +==24929== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24929== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24929== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24929== by 0x5308D38: PetscInitialize (pinit.c:924) +==24929== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24929== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24929== by 0x126E96: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24929== by 0x1215DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24929== by 0x1243B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24929== by 0x124254: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24929== by 0x1248EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24929== by 0x11F185: main (TestCvodeAdaptor.cpp:19) +==24929== +==24929== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24929== at 0x4F56A1C: __open_nocancel (open64_nocancel.c:39) +==24929== by 0x4EDABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24929== by 0x4B76822: ??? +==24929== by 0x4B7696F: ??? +==24929== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24929== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24929== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24929== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24929== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24929== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24929== by 0x5308D38: PetscInitialize (pinit.c:924) +==24929== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24929== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24929== by 0x126E96: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24929== by 0x1215DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24929== by 0x1243B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24929== by 0x124254: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24929== by 0x1248EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24929== by 0x11F185: main (TestCvodeAdaptor.cpp:19) +==24929== +==24929== Open file descriptor 116: +==24929== +==24929== +==24929== Open file descriptor 113: +==24929== +==24929== +==24929== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeAdaptor_valgrind.txt +==24929== +==24929== +==24929== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24929== +==24929== +==24929== +==24929== HEAP SUMMARY: +==24929== in use at exit: 617,934 bytes in 8,238 blocks +==24929== total heap usage: 49,833 allocs, 41,595 frees, 1,338,663,625 bytes allocated +==24929== +==24929== LEAK SUMMARY: +==24929== definitely lost: 0 bytes in 0 blocks +==24929== indirectly lost: 0 bytes in 0 blocks +==24929== possibly lost: 0 bytes in 0 blocks +==24929== still reachable: 24 bytes in 2 blocks +==24929== suppressed: 617,910 bytes in 8,236 blocks +==24929== Reachable blocks (those to which a pointer was found) are not shown. +==24929== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24929== +==24929== For lists of detected and suppressed errors, rerun with: -s +==24929== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestCvodeCellsWithDataClamp_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCvodeCellsWithDataClamp_valgrind.txt new file mode 100644 index 000000000..7a7e207a3 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCvodeCellsWithDataClamp_valgrind.txt @@ -0,0 +1,73 @@ +==41313== Memcheck, a memory error detector +==41313== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41313== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41313== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeCellsWithDataClamp -malloc_debug -malloc_dump -memory_info +==41313== Parent PID: 23966 +==41313== +==41313== +==41313== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41313== Open file descriptor 12: +==41313== at 0x9D9107D: pipe (pipe.c:29) +==41313== by 0x1433707D: ??? +==41313== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41313== by 0x98DD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41313== by 0x9876D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41313== by 0x856DD38: PetscInitialize (pinit.c:924) +==41313== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41313== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41313== by 0x12948D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41313== by 0x124351: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41313== by 0x126E16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41313== by 0x126CB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41313== by 0x12734D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41313== by 0x1222A5: main (TestCvodeCellsWithDataClamp.cpp:19) +==41313== +==41313== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41313== at 0x9D95A1C: __open_nocancel (open64_nocancel.c:39) +==41313== by 0x9D19BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41313== by 0x8419822: ??? +==41313== by 0x841996F: ??? +==41313== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41313== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41313== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41313== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41313== by 0x98DD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41313== by 0x9876D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41313== by 0x856DD38: PetscInitialize (pinit.c:924) +==41313== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41313== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41313== by 0x12948D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41313== by 0x124351: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41313== by 0x126E16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41313== by 0x126CB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41313== by 0x12734D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41313== by 0x1222A5: main (TestCvodeCellsWithDataClamp.cpp:19) +==41313== +==41313== Open file descriptor 116: +==41313== +==41313== +==41313== Open file descriptor 113: +==41313== +==41313== +==41313== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeCellsWithDataClamp_valgrind.txt +==41313== +==41313== +==41313== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41313== +==41313== +==41313== +==41313== HEAP SUMMARY: +==41313== in use at exit: 624,634 bytes in 8,243 blocks +==41313== total heap usage: 102,616 allocs, 94,373 frees, 1,481,816,607 bytes allocated +==41313== +==41313== LEAK SUMMARY: +==41313== definitely lost: 0 bytes in 0 blocks +==41313== indirectly lost: 0 bytes in 0 blocks +==41313== possibly lost: 0 bytes in 0 blocks +==41313== still reachable: 6,379 bytes in 11 blocks +==41313== suppressed: 618,255 bytes in 8,232 blocks +==41313== Reachable blocks (those to which a pointer was found) are not shown. +==41313== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41313== +==41313== For lists of detected and suppressed errors, rerun with: -s +==41313== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestCvodeCells_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCvodeCells_valgrind.txt new file mode 100644 index 000000000..19707486c --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCvodeCells_valgrind.txt @@ -0,0 +1,73 @@ +==41312== Memcheck, a memory error detector +==41312== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41312== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41312== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeCells -malloc_debug -malloc_dump -memory_info +==41312== Parent PID: 23966 +==41312== +==41312== +==41312== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41312== Open file descriptor 12: +==41312== at 0x9D1D07D: pipe (pipe.c:29) +==41312== by 0x1433707D: ??? +==41312== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41312== by 0x9950418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41312== by 0x98E9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41312== by 0x85E0D38: PetscInitialize (pinit.c:924) +==41312== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41312== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41312== by 0x1353CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41312== by 0x12FB8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41312== by 0x132882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41312== by 0x132722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41312== by 0x132DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41312== by 0x12AB65: main (TestCvodeCells.cpp:19) +==41312== +==41312== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41312== at 0x9D21A1C: __open_nocancel (open64_nocancel.c:39) +==41312== by 0x9CA5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41312== by 0x848C822: ??? +==41312== by 0x848C96F: ??? +==41312== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41312== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41312== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41312== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41312== by 0x9950418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41312== by 0x98E9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41312== by 0x85E0D38: PetscInitialize (pinit.c:924) +==41312== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41312== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41312== by 0x1353CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41312== by 0x12FB8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41312== by 0x132882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41312== by 0x132722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41312== by 0x132DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41312== by 0x12AB65: main (TestCvodeCells.cpp:19) +==41312== +==41312== Open file descriptor 116: +==41312== +==41312== +==41312== Open file descriptor 113: +==41312== +==41312== +==41312== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeCells_valgrind.txt +==41312== +==41312== +==41312== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41312== +==41312== +==41312== +==41312== HEAP SUMMARY: +==41312== in use at exit: 620,050 bytes in 8,238 blocks +==41312== total heap usage: 231,022 allocs, 222,784 frees, 1,363,913,674 bytes allocated +==41312== +==41312== LEAK SUMMARY: +==41312== definitely lost: 0 bytes in 0 blocks +==41312== indirectly lost: 0 bytes in 0 blocks +==41312== possibly lost: 0 bytes in 0 blocks +==41312== still reachable: 1,795 bytes in 6 blocks +==41312== suppressed: 618,255 bytes in 8,232 blocks +==41312== Reachable blocks (those to which a pointer was found) are not shown. +==41312== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41312== +==41312== For lists of detected and suppressed errors, rerun with: -s +==41312== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-10-14_17-51-53/TestCvodeWithJacobian_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCvodeWithJacobian_valgrind.txt new file mode 100644 index 000000000..7c7bdff80 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCvodeWithJacobian_valgrind.txt @@ -0,0 +1,73 @@ +==41522== Memcheck, a memory error detector +==41522== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41522== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41522== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeWithJacobian -malloc_debug -malloc_dump -memory_info +==41522== Parent PID: 23966 +==41522== +==41522== +==41522== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41522== Open file descriptor 12: +==41522== at 0x9C6807D: pipe (pipe.c:29) +==41522== by 0x1433707D: ??? +==41522== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41522== by 0x989B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41522== by 0x9834D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41522== by 0x8508D38: PetscInitialize (pinit.c:924) +==41522== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41522== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41522== by 0x117769: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41522== by 0x1133B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41522== by 0x1155A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41522== by 0x11549E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41522== by 0x115AB1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41522== by 0x111BB5: main (TestCvodeWithJacobian.cpp:18) +==41522== +==41522== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41522== at 0x9C6CA1C: __open_nocancel (open64_nocancel.c:39) +==41522== by 0x9BF0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41522== by 0x9797822: ??? +==41522== by 0x979796F: ??? +==41522== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41522== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41522== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41522== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41522== by 0x989B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41522== by 0x9834D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41522== by 0x8508D38: PetscInitialize (pinit.c:924) +==41522== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41522== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41522== by 0x117769: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41522== by 0x1133B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41522== by 0x1155A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41522== by 0x11549E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41522== by 0x115AB1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41522== by 0x111BB5: main (TestCvodeWithJacobian.cpp:18) +==41522== +==41522== Open file descriptor 116: +==41522== +==41522== +==41522== Open file descriptor 113: +==41522== +==41522== +==41522== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeWithJacobian_valgrind.txt +==41522== +==41522== +==41522== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41522== +==41522== +==41522== +==41522== HEAP SUMMARY: +==41522== in use at exit: 618,279 bytes in 8,234 blocks +==41522== total heap usage: 74,027 allocs, 65,793 frees, 1,342,639,300 bytes allocated +==41522== +==41522== LEAK SUMMARY: +==41522== definitely lost: 0 bytes in 0 blocks +==41522== indirectly lost: 0 bytes in 0 blocks +==41522== possibly lost: 0 bytes in 0 blocks +==41522== still reachable: 24 bytes in 2 blocks +==41522== suppressed: 618,255 bytes in 8,232 blocks +==41522== Reachable blocks (those to which a pointer was found) are not shown. +==41522== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41522== +==41522== For lists of detected and suppressed errors, rerun with: -s +==41522== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestCwd_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCwd_valgrind.txt new file mode 100644 index 000000000..dcfe09754 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCwd_valgrind.txt @@ -0,0 +1,73 @@ +==23999== Memcheck, a memory error detector +==23999== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23999== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23999== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCwd -malloc_debug -malloc_dump -memory_info +==23999== Parent PID: 23966 +==23999== +==23999== +==23999== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23999== Open file descriptor 12: +==23999== at 0x616907D: pipe (pipe.c:29) +==23999== by 0xAEAD07D: ??? +==23999== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23999== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23999== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23999== by 0x4A23D38: PetscInitialize (pinit.c:924) +==23999== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23999== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23999== by 0x1130E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23999== by 0x10EFB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23999== by 0x1111A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23999== by 0x11109E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23999== by 0x1116B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23999== by 0x10D7B5: main (TestCwd.cpp:18) +==23999== +==23999== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23999== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==23999== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23999== by 0x5CB2822: ??? +==23999== by 0x5CB296F: ??? +==23999== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23999== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23999== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23999== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23999== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23999== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23999== by 0x4A23D38: PetscInitialize (pinit.c:924) +==23999== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23999== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23999== by 0x1130E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23999== by 0x10EFB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23999== by 0x1111A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23999== by 0x11109E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23999== by 0x1116B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23999== by 0x10D7B5: main (TestCwd.cpp:18) +==23999== +==23999== Open file descriptor 116: +==23999== +==23999== +==23999== Open file descriptor 113: +==23999== +==23999== +==23999== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCwd_valgrind.txt +==23999== +==23999== +==23999== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23999== +==23999== +==23999== +==23999== HEAP SUMMARY: +==23999== in use at exit: 617,870 bytes in 8,238 blocks +==23999== total heap usage: 44,920 allocs, 36,682 frees, 1,338,164,700 bytes allocated +==23999== +==23999== LEAK SUMMARY: +==23999== definitely lost: 0 bytes in 0 blocks +==23999== indirectly lost: 0 bytes in 0 blocks +==23999== possibly lost: 0 bytes in 0 blocks +==23999== still reachable: 24 bytes in 2 blocks +==23999== suppressed: 617,846 bytes in 8,236 blocks +==23999== Reachable blocks (those to which a pointer was found) are not shown. +==23999== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23999== +==23999== For lists of detected and suppressed errors, rerun with: -s +==23999== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestCylindrical2dMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCylindrical2dMesh_valgrind.txt new file mode 100644 index 000000000..e4d40e8dc --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCylindrical2dMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24469== Memcheck, a memory error detector +==24469== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24469== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24469== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dMesh -malloc_debug -malloc_dump -memory_info +==24469== Parent PID: 23966 +==24469== +==24469== +==24469== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24469== Open file descriptor 12: +==24469== at 0x823C07D: pipe (pipe.c:29) +==24469== by 0x100D407D: ??? +==24469== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24469== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24469== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24469== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24469== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24469== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24469== by 0x12A575: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24469== by 0x124FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24469== by 0x127D3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24469== by 0x127BDF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24469== by 0x128275: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24469== by 0x123425: main (TestCylindrical2dMesh.cpp:19) +==24469== +==24469== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24469== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24469== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24469== by 0x6597822: ??? +==24469== by 0x659796F: ??? +==24469== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24469== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24469== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24469== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24469== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24469== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24469== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24469== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24469== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24469== by 0x12A575: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24469== by 0x124FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24469== by 0x127D3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24469== by 0x127BDF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24469== by 0x128275: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24469== by 0x123425: main (TestCylindrical2dMesh.cpp:19) +==24469== +==24469== Open file descriptor 116: +==24469== +==24469== +==24469== Open file descriptor 113: +==24469== +==24469== +==24469== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dMesh_valgrind.txt +==24469== +==24469== +==24469== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24469== +==24469== +==24469== +==24469== HEAP SUMMARY: +==24469== in use at exit: 618,238 bytes in 8,238 blocks +==24469== total heap usage: 165,852 allocs, 157,614 frees, 1,356,852,907 bytes allocated +==24469== +==24469== LEAK SUMMARY: +==24469== definitely lost: 0 bytes in 0 blocks +==24469== indirectly lost: 0 bytes in 0 blocks +==24469== possibly lost: 0 bytes in 0 blocks +==24469== still reachable: 24 bytes in 2 blocks +==24469== suppressed: 618,214 bytes in 8,236 blocks +==24469== Reachable blocks (those to which a pointer was found) are not shown. +==24469== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24469== +==24469== For lists of detected and suppressed errors, rerun with: -s +==24469== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestCylindrical2dNodesOnlyMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCylindrical2dNodesOnlyMesh_valgrind.txt new file mode 100644 index 000000000..48eb89485 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCylindrical2dNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24485== Memcheck, a memory error detector +==24485== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24485== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24485== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==24485== Parent PID: 23966 +==24485== +==24485== +==24485== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24485== Open file descriptor 12: +==24485== at 0x6D8507D: pipe (pipe.c:29) +==24485== by 0x100D407D: ??? +==24485== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24485== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24485== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24485== by 0x701FD38: PetscInitialize (pinit.c:924) +==24485== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24485== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24485== by 0x126F1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24485== by 0x121B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24485== by 0x1248C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24485== by 0x124768: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24485== by 0x124DFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24485== by 0x11FFC5: main (TestCylindrical2dNodesOnlyMesh.cpp:19) +==24485== +==24485== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24485== at 0x6D89A1C: __open_nocancel (open64_nocancel.c:39) +==24485== by 0x6D0DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24485== by 0x6597822: ??? +==24485== by 0x659796F: ??? +==24485== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24485== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24485== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24485== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24485== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24485== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24485== by 0x701FD38: PetscInitialize (pinit.c:924) +==24485== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24485== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24485== by 0x126F1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24485== by 0x121B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24485== by 0x1248C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24485== by 0x124768: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24485== by 0x124DFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24485== by 0x11FFC5: main (TestCylindrical2dNodesOnlyMesh.cpp:19) +==24485== +==24485== Open file descriptor 116: +==24485== +==24485== +==24485== Open file descriptor 113: +==24485== +==24485== +==24485== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dNodesOnlyMesh_valgrind.txt +==24485== +==24485== +==24485== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24485== +==24485== +==24485== +==24485== HEAP SUMMARY: +==24485== in use at exit: 618,238 bytes in 8,238 blocks +==24485== total heap usage: 58,557 allocs, 50,319 frees, 1,341,296,574 bytes allocated +==24485== +==24485== LEAK SUMMARY: +==24485== definitely lost: 0 bytes in 0 blocks +==24485== indirectly lost: 0 bytes in 0 blocks +==24485== possibly lost: 0 bytes in 0 blocks +==24485== still reachable: 24 bytes in 2 blocks +==24485== suppressed: 618,214 bytes in 8,236 blocks +==24485== Reachable blocks (those to which a pointer was found) are not shown. +==24485== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24485== +==24485== For lists of detected and suppressed errors, rerun with: -s +==24485== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestCylindrical2dVertexMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCylindrical2dVertexMesh_valgrind.txt new file mode 100644 index 000000000..087637792 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCylindrical2dVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24677== Memcheck, a memory error detector +==24677== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24677== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24677== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dVertexMesh -malloc_debug -malloc_dump -memory_info +==24677== Parent PID: 23966 +==24677== +==24677== +==24677== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24677== Open file descriptor 12: +==24677== at 0x823C07D: pipe (pipe.c:29) +==24677== by 0x100D407D: ??? +==24677== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24677== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24677== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24677== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24677== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24677== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24677== by 0x129413: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24677== by 0x123FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24677== by 0x126C38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24677== by 0x126AD9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24677== by 0x12716F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24677== by 0x1223E5: main (TestCylindrical2dVertexMesh.cpp:19) +==24677== +==24677== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24677== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24677== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24677== by 0x6597822: ??? +==24677== by 0x659796F: ??? +==24677== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24677== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24677== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24677== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24677== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24677== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24677== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24677== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24677== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24677== by 0x129413: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24677== by 0x123FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24677== by 0x126C38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24677== by 0x126AD9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24677== by 0x12716F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24677== by 0x1223E5: main (TestCylindrical2dVertexMesh.cpp:19) +==24677== +==24677== Open file descriptor 116: +==24677== +==24677== +==24677== Open file descriptor 113: +==24677== +==24677== +==24677== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dVertexMesh_valgrind.txt +==24677== +==24677== +==24677== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24677== +==24677== +==24677== +==24677== HEAP SUMMARY: +==24677== in use at exit: 618,238 bytes in 8,238 blocks +==24677== total heap usage: 152,614 allocs, 144,376 frees, 1,348,607,304 bytes allocated +==24677== +==24677== LEAK SUMMARY: +==24677== definitely lost: 0 bytes in 0 blocks +==24677== indirectly lost: 0 bytes in 0 blocks +==24677== possibly lost: 0 bytes in 0 blocks +==24677== still reachable: 24 bytes in 2 blocks +==24677== suppressed: 618,214 bytes in 8,236 blocks +==24677== Reachable blocks (those to which a pointer was found) are not shown. +==24677== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24677== +==24677== For lists of detected and suppressed errors, rerun with: -s +==24677== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-10-14_17-51-53/TestCylindricalHoneycombMeshGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCylindricalHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..b51f62acf --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCylindricalHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24493== Memcheck, a memory error detector +==24493== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24493== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24493== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindricalHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24493== Parent PID: 23966 +==24493== +==24493== +==24493== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24493== Open file descriptor 12: +==24493== at 0x811107D: pipe (pipe.c:29) +==24493== by 0x100D407D: ??? +==24493== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24493== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24493== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24493== by 0x6686D38: PetscInitialize (pinit.c:924) +==24493== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24493== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24493== by 0x11A3C5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24493== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24493== by 0x1181AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24493== by 0x11804C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24493== by 0x1186E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24493== by 0x113AF5: main (TestCylindricalHoneycombMeshGenerator.cpp:19) +==24493== +==24493== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24493== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24493== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24493== by 0x7915822: ??? +==24493== by 0x791596F: ??? +==24493== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24493== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24493== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24493== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24493== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24493== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24493== by 0x6686D38: PetscInitialize (pinit.c:924) +==24493== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24493== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24493== by 0x11A3C5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24493== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24493== by 0x1181AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24493== by 0x11804C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24493== by 0x1186E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24493== by 0x113AF5: main (TestCylindricalHoneycombMeshGenerator.cpp:19) +==24493== +==24493== Open file descriptor 116: +==24493== +==24493== +==24493== Open file descriptor 113: +==24493== +==24493== +==24493== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindricalHoneycombMeshGenerator_valgrind.txt +==24493== +==24493== +==24493== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24493== +==24493== +==24493== +==24493== HEAP SUMMARY: +==24493== in use at exit: 618,238 bytes in 8,238 blocks +==24493== total heap usage: 92,054 allocs, 83,816 frees, 1,341,718,434 bytes allocated +==24493== +==24493== LEAK SUMMARY: +==24493== definitely lost: 0 bytes in 0 blocks +==24493== indirectly lost: 0 bytes in 0 blocks +==24493== possibly lost: 0 bytes in 0 blocks +==24493== still reachable: 24 bytes in 2 blocks +==24493== suppressed: 618,214 bytes in 8,236 blocks +==24493== Reachable blocks (those to which a pointer was found) are not shown. +==24493== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24493== +==24493== For lists of detected and suppressed errors, rerun with: -s +==24493== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..424bdc000 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24679== Memcheck, a memory error detector +==24679== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24679== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24679== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindricalHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24679== Parent PID: 23966 +==24679== +==24679== +==24679== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24679== Open file descriptor 12: +==24679== at 0x811107D: pipe (pipe.c:29) +==24679== by 0x100D407D: ??? +==24679== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24679== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24679== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24679== by 0x6686D38: PetscInitialize (pinit.c:924) +==24679== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24679== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24679== by 0x11A15D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24679== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24679== by 0x1162D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24679== by 0x116176: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24679== by 0x11680D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24679== by 0x111D75: main (TestCylindricalHoneycombVertexMeshGenerator.cpp:19) +==24679== +==24679== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24679== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24679== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24679== by 0x7915822: ??? +==24679== by 0x791596F: ??? +==24679== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24679== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24679== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24679== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24679== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24679== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24679== by 0x6686D38: PetscInitialize (pinit.c:924) +==24679== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24679== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24679== by 0x11A15D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24679== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24679== by 0x1162D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24679== by 0x116176: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24679== by 0x11680D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24679== by 0x111D75: main (TestCylindricalHoneycombVertexMeshGenerator.cpp:19) +==24679== +==24679== Open file descriptor 116: +==24679== +==24679== +==24679== Open file descriptor 113: +==24679== +==24679== +==24679== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt +==24679== +==24679== +==24679== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24679== +==24679== +==24679== +==24679== HEAP SUMMARY: +==24679== in use at exit: 618,238 bytes in 8,238 blocks +==24679== total heap usage: 50,611 allocs, 42,373 frees, 1,338,862,549 bytes allocated +==24679== +==24679== LEAK SUMMARY: +==24679== definitely lost: 0 bytes in 0 blocks +==24679== indirectly lost: 0 bytes in 0 blocks +==24679== possibly lost: 0 bytes in 0 blocks +==24679== still reachable: 24 bytes in 2 blocks +==24679== suppressed: 618,214 bytes in 8,236 blocks +==24679== Reachable blocks (those to which a pointer was found) are not shown. +==24679== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24679== +==24679== For lists of detected and suppressed errors, rerun with: -s +==24679== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestDebug_valgrind.txt b/log-files/2024-10-14_17-51-53/TestDebug_valgrind.txt new file mode 100644 index 000000000..a10bd6e77 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestDebug_valgrind.txt @@ -0,0 +1,73 @@ +==24024== Memcheck, a memory error detector +==24024== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24024== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24024== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestDebug -malloc_debug -malloc_dump -memory_info +==24024== Parent PID: 23966 +==24024== +==24024== +==24024== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24024== Open file descriptor 12: +==24024== at 0x4CB207D: pipe (pipe.c:29) +==24024== by 0xAEAD07D: ??? +==24024== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24024== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24024== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24024== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24024== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24024== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24024== by 0x112F42: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24024== by 0x10EE33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24024== by 0x11100C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24024== by 0x110F08: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24024== by 0x11151B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24024== by 0x10D635: main (TestDebug.cpp:18) +==24024== +==24024== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24024== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24024== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24024== by 0x4934822: ??? +==24024== by 0x493496F: ??? +==24024== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24024== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24024== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24024== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24024== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24024== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24024== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24024== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24024== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24024== by 0x112F42: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24024== by 0x10EE33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24024== by 0x11100C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24024== by 0x110F08: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24024== by 0x11151B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24024== by 0x10D635: main (TestDebug.cpp:18) +==24024== +==24024== Open file descriptor 116: +==24024== +==24024== +==24024== Open file descriptor 113: +==24024== +==24024== +==24024== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDebug_valgrind.txt +==24024== +==24024== +==24024== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24024== +==24024== +==24024== +==24024== HEAP SUMMARY: +==24024== in use at exit: 617,870 bytes in 8,238 blocks +==24024== total heap usage: 44,920 allocs, 36,682 frees, 1,340,566,306 bytes allocated +==24024== +==24024== LEAK SUMMARY: +==24024== definitely lost: 0 bytes in 0 blocks +==24024== indirectly lost: 0 bytes in 0 blocks +==24024== possibly lost: 0 bytes in 0 blocks +==24024== still reachable: 24 bytes in 2 blocks +==24024== suppressed: 617,846 bytes in 8,236 blocks +==24024== Reachable blocks (those to which a pointer was found) are not shown. +==24024== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24024== +==24024== For lists of detected and suppressed errors, rerun with: -s +==24024== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestDeltaNotchModifier_valgrind.txt b/log-files/2024-10-14_17-51-53/TestDeltaNotchModifier_valgrind.txt new file mode 100644 index 000000000..11e3b54f4 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestDeltaNotchModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26180== Memcheck, a memory error detector +==26180== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26180== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26180== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDeltaNotchModifier -malloc_debug -malloc_dump -memory_info +==26180== Parent PID: 23966 +==26180== +==26180== +==26180== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26180== Open file descriptor 12: +==26180== at 0xF84307D: pipe (pipe.c:29) +==26180== by 0x196BC07D: ??? +==26180== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26180== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26180== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26180== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26180== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26180== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26180== by 0x208508: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26180== by 0x1FFF99: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26180== by 0x203992: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26180== by 0x203832: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26180== by 0x203EC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26180== by 0x1FE3B5: main (TestDeltaNotchModifier.cpp:19) +==26180== +==26180== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26180== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==26180== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26180== by 0xF13E822: ??? +==26180== by 0xF13E96F: ??? +==26180== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26180== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26180== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26180== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26180== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26180== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26180== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26180== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26180== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26180== by 0x208508: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26180== by 0x1FFF99: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26180== by 0x203992: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26180== by 0x203832: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26180== by 0x203EC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26180== by 0x1FE3B5: main (TestDeltaNotchModifier.cpp:19) +==26180== +==26180== Open file descriptor 116: +==26180== +==26180== +==26180== Open file descriptor 113: +==26180== +==26180== +==26180== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDeltaNotchModifier_valgrind.txt +==26180== +==26180== +==26180== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26180== +==26180== +==26180== +==26180== HEAP SUMMARY: +==26180== in use at exit: 618,295 bytes in 8,235 blocks +==26180== total heap usage: 5,587,079 allocs, 5,578,844 frees, 8,884,016,343 bytes allocated +==26180== +==26180== LEAK SUMMARY: +==26180== definitely lost: 0 bytes in 0 blocks +==26180== indirectly lost: 0 bytes in 0 blocks +==26180== possibly lost: 0 bytes in 0 blocks +==26180== still reachable: 56 bytes in 3 blocks +==26180== suppressed: 618,239 bytes in 8,232 blocks +==26180== Reachable blocks (those to which a pointer was found) are not shown. +==26180== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26180== +==26180== For lists of detected and suppressed errors, rerun with: -s +==26180== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestDeltaNotchOdeSystem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestDeltaNotchOdeSystem_valgrind.txt new file mode 100644 index 000000000..41537475f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestDeltaNotchOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25836== Memcheck, a memory error detector +==25836== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25836== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25836== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDeltaNotchOdeSystem -malloc_debug -malloc_dump -memory_info +==25836== Parent PID: 23966 +==25836== +==25836== +==25836== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25836== Open file descriptor 12: +==25836== at 0xEF9407D: pipe (pipe.c:29) +==25836== by 0x196BD07D: ??? +==25836== by 0x13C594CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25836== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25836== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25836== by 0xD871D38: PetscInitialize (pinit.c:924) +==25836== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25836== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25836== by 0x123193: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25836== by 0x11E6C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25836== by 0x120CDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25836== by 0x120BD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25836== by 0x1211EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25836== by 0x11CEC5: main (TestDeltaNotchOdeSystem.cpp:18) +==25836== +==25836== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25836== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25836== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25836== by 0xD71D822: ??? +==25836== by 0xD71D96F: ??? +==25836== by 0x13CFE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25836== by 0x13CFE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25836== by 0x13CB4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25836== by 0x13C592DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25836== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25836== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25836== by 0xD871D38: PetscInitialize (pinit.c:924) +==25836== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25836== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25836== by 0x123193: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25836== by 0x11E6C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25836== by 0x120CDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25836== by 0x120BD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25836== by 0x1211EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25836== by 0x11CEC5: main (TestDeltaNotchOdeSystem.cpp:18) +==25836== +==25836== Open file descriptor 116: +==25836== +==25836== +==25836== Open file descriptor 113: +==25836== +==25836== +==25836== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDeltaNotchOdeSystem_valgrind.txt +==25836== +==25836== +==25836== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25836== +==25836== +==25836== +==25836== HEAP SUMMARY: +==25836== in use at exit: 618,334 bytes in 8,238 blocks +==25836== total heap usage: 53,415 allocs, 45,177 frees, 1,338,943,025 bytes allocated +==25836== +==25836== LEAK SUMMARY: +==25836== definitely lost: 0 bytes in 0 blocks +==25836== indirectly lost: 0 bytes in 0 blocks +==25836== possibly lost: 0 bytes in 0 blocks +==25836== still reachable: 24 bytes in 2 blocks +==25836== suppressed: 618,310 bytes in 8,236 blocks +==25836== Reachable blocks (those to which a pointer was found) are not shown. +==25836== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25836== +==25836== For lists of detected and suppressed errors, rerun with: -s +==25836== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestDiscreteSystemForceCalculator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestDiscreteSystemForceCalculator_valgrind.txt new file mode 100644 index 000000000..f9c6cf04e --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestDiscreteSystemForceCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==25965== Memcheck, a memory error detector +==25965== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25965== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25965== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDiscreteSystemForceCalculator -malloc_debug -malloc_dump -memory_info +==25965== Parent PID: 23966 +==25965== +==25965== +==25965== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25965== Open file descriptor 12: +==25965== at 0x10CB807D: pipe (pipe.c:29) +==25965== by 0x196BC07D: ??? +==25965== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25965== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25965== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25965== by 0xF22DD38: PetscInitialize (pinit.c:924) +==25965== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25965== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25965== by 0x12A32F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25965== by 0x123F2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25965== by 0x1269BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25965== by 0x12685E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25965== by 0x126EF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25965== by 0x122355: main (TestDiscreteSystemForceCalculator.cpp:19) +==25965== +==25965== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25965== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==25965== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25965== by 0x104BC822: ??? +==25965== by 0x104BC96F: ??? +==25965== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25965== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25965== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25965== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25965== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25965== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25965== by 0xF22DD38: PetscInitialize (pinit.c:924) +==25965== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25965== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25965== by 0x12A32F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25965== by 0x123F2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25965== by 0x1269BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25965== by 0x12685E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25965== by 0x126EF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25965== by 0x122355: main (TestDiscreteSystemForceCalculator.cpp:19) +==25965== +==25965== Open file descriptor 116: +==25965== +==25965== +==25965== Open file descriptor 113: +==25965== +==25965== +==25965== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDiscreteSystemForceCalculator_valgrind.txt +==25965== +==25965== +==25965== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25965== +==25965== +==25965== +==25965== HEAP SUMMARY: +==25965== in use at exit: 618,366 bytes in 8,239 blocks +==25965== total heap usage: 123,056 allocs, 114,817 frees, 1,345,486,086 bytes allocated +==25965== +==25965== LEAK SUMMARY: +==25965== definitely lost: 0 bytes in 0 blocks +==25965== indirectly lost: 0 bytes in 0 blocks +==25965== possibly lost: 0 bytes in 0 blocks +==25965== still reachable: 56 bytes in 3 blocks +==25965== suppressed: 618,310 bytes in 8,236 blocks +==25965== Reachable blocks (those to which a pointer was found) are not shown. +==25965== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25965== +==25965== For lists of detected and suppressed errors, rerun with: -s +==25965== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-10-14_17-51-53/TestDistanceMapCalculator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestDistanceMapCalculator_valgrind.txt new file mode 100644 index 000000000..cb307e7e6 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestDistanceMapCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==24633== Memcheck, a memory error detector +==24633== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24633== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24633== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistanceMapCalculator -malloc_debug -malloc_dump -memory_info +==24633== Parent PID: 23966 +==24633== +==24633== +==24633== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24633== Open file descriptor 12: +==24633== at 0x6D4307D: pipe (pipe.c:29) +==24633== by 0x100D407D: ??? +==24633== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24633== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24633== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24633== by 0x701FD38: PetscInitialize (pinit.c:924) +==24633== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24633== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24633== by 0x121308: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24633== by 0x11C90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24633== by 0x11F030: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24633== by 0x11EED0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24633== by 0x11F567: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24633== by 0x11AD35: main (TestDistanceMapCalculator.cpp:19) +==24633== +==24633== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24633== at 0x6D47A1C: __open_nocancel (open64_nocancel.c:39) +==24633== by 0x6CCBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24633== by 0x6597822: ??? +==24633== by 0x659796F: ??? +==24633== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24633== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24633== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24633== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24633== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24633== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24633== by 0x701FD38: PetscInitialize (pinit.c:924) +==24633== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24633== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24633== by 0x121308: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24633== by 0x11C90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24633== by 0x11F030: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24633== by 0x11EED0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24633== by 0x11F567: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24633== by 0x11AD35: main (TestDistanceMapCalculator.cpp:19) +==24633== +==24633== Open file descriptor 116: +==24633== +==24633== +==24633== Open file descriptor 113: +==24633== +==24633== +==24633== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistanceMapCalculator_valgrind.txt +==24633== +==24633== +==24633== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24633== +==24633== +==24633== +==24633== HEAP SUMMARY: +==24633== in use at exit: 620,719 bytes in 8,235 blocks +==24633== total heap usage: 7,651,833 allocs, 7,643,598 frees, 1,604,363,012 bytes allocated +==24633== +==24633== LEAK SUMMARY: +==24633== definitely lost: 0 bytes in 0 blocks +==24633== indirectly lost: 0 bytes in 0 blocks +==24633== possibly lost: 0 bytes in 0 blocks +==24633== still reachable: 2,576 bytes in 3 blocks +==24633== suppressed: 618,143 bytes in 8,232 blocks +==24633== Reachable blocks (those to which a pointer was found) are not shown. +==24633== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24633== +==24633== For lists of detected and suppressed errors, rerun with: -s +==24633== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-10-14_17-51-53/TestDistributedBoxCollection_valgrind.txt b/log-files/2024-10-14_17-51-53/TestDistributedBoxCollection_valgrind.txt new file mode 100644 index 000000000..d5ec663bc --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestDistributedBoxCollection_valgrind.txt @@ -0,0 +1,73 @@ +==24631== Memcheck, a memory error detector +==24631== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24631== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24631== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedBoxCollection -malloc_debug -malloc_dump -memory_info +==24631== Parent PID: 23966 +==24631== +==24631== +==24631== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24631== Open file descriptor 12: +==24631== at 0x823C07D: pipe (pipe.c:29) +==24631== by 0x100D407D: ??? +==24631== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24631== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24631== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24631== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24631== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24631== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24631== by 0x161C60: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24631== by 0x15BFE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24631== by 0x15F37A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24631== by 0x15F21A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24631== by 0x15F8B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24631== by 0x15A405: main (TestDistributedBoxCollection.cpp:19) +==24631== +==24631== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24631== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24631== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24631== by 0x6597822: ??? +==24631== by 0x659796F: ??? +==24631== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24631== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24631== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24631== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24631== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24631== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24631== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24631== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24631== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24631== by 0x161C60: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24631== by 0x15BFE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24631== by 0x15F37A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24631== by 0x15F21A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24631== by 0x15F8B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24631== by 0x15A405: main (TestDistributedBoxCollection.cpp:19) +==24631== +==24631== Open file descriptor 116: +==24631== +==24631== +==24631== Open file descriptor 113: +==24631== +==24631== +==24631== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedBoxCollection_valgrind.txt +==24631== +==24631== +==24631== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24631== +==24631== +==24631== +==24631== HEAP SUMMARY: +==24631== in use at exit: 618,238 bytes in 8,238 blocks +==24631== total heap usage: 179,702 allocs, 171,464 frees, 1,440,800,381 bytes allocated +==24631== +==24631== LEAK SUMMARY: +==24631== definitely lost: 0 bytes in 0 blocks +==24631== indirectly lost: 0 bytes in 0 blocks +==24631== possibly lost: 0 bytes in 0 blocks +==24631== still reachable: 24 bytes in 2 blocks +==24631== suppressed: 618,214 bytes in 8,236 blocks +==24631== Reachable blocks (those to which a pointer was found) are not shown. +==24631== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24631== +==24631== For lists of detected and suppressed errors, rerun with: -s +==24631== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestDistributedQuadraticMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestDistributedQuadraticMesh_valgrind.txt new file mode 100644 index 000000000..d720884e2 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestDistributedQuadraticMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24349== Memcheck, a memory error detector +==24349== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24349== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24349== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedQuadraticMesh -malloc_debug -malloc_dump -memory_info +==24349== Parent PID: 23966 +==24349== +==24349== +==24349== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24349== Open file descriptor 12: +==24349== at 0x6D8507D: pipe (pipe.c:29) +==24349== by 0x100D407D: ??? +==24349== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24349== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24349== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24349== by 0x701FD38: PetscInitialize (pinit.c:924) +==24349== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24349== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24349== by 0x12A04E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24349== by 0x124E9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24349== by 0x127B7A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24349== by 0x127A1A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24349== by 0x1280B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24349== by 0x1232C5: main (TestDistributedQuadraticMesh.cpp:19) +==24349== +==24349== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24349== at 0x6D89A1C: __open_nocancel (open64_nocancel.c:39) +==24349== by 0x6D0DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24349== by 0x6597822: ??? +==24349== by 0x659796F: ??? +==24349== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24349== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24349== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24349== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24349== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24349== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24349== by 0x701FD38: PetscInitialize (pinit.c:924) +==24349== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24349== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24349== by 0x12A04E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24349== by 0x124E9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24349== by 0x127B7A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24349== by 0x127A1A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24349== by 0x1280B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24349== by 0x1232C5: main (TestDistributedQuadraticMesh.cpp:19) +==24349== +==24349== Open file descriptor 116: +==24349== +==24349== +==24349== Open file descriptor 113: +==24349== +==24349== +==24349== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedQuadraticMesh_valgrind.txt +==24349== +==24349== +==24349== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24349== +==24349== +==24349== +==24349== HEAP SUMMARY: +==24349== in use at exit: 618,238 bytes in 8,238 blocks +==24349== total heap usage: 204,142 allocs, 195,904 frees, 1,346,746,415 bytes allocated +==24349== +==24349== LEAK SUMMARY: +==24349== definitely lost: 0 bytes in 0 blocks +==24349== indirectly lost: 0 bytes in 0 blocks +==24349== possibly lost: 0 bytes in 0 blocks +==24349== still reachable: 24 bytes in 2 blocks +==24349== suppressed: 618,214 bytes in 8,236 blocks +==24349== Reachable blocks (those to which a pointer was found) are not shown. +==24349== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24349== +==24349== For lists of detected and suppressed errors, rerun with: -s +==24349== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestDistributedTetrahedralMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestDistributedTetrahedralMesh_valgrind.txt new file mode 100644 index 000000000..0be425c17 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestDistributedTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24350== Memcheck, a memory error detector +==24350== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24350== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24350== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==24350== Parent PID: 23966 +==24350== +==24350== +==24350== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24350== Open file descriptor 12: +==24350== at 0x823C07D: pipe (pipe.c:29) +==24350== by 0x100D407D: ??? +==24350== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24350== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24350== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24350== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24350== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24350== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24350== by 0x1464DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24350== by 0x13EB23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24350== by 0x141FCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24350== by 0x141E6E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24350== by 0x142505: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24350== by 0x13CE05: main (TestDistributedTetrahedralMesh.cpp:19) +==24350== +==24350== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24350== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24350== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24350== by 0x6597822: ??? +==24350== by 0x659796F: ??? +==24350== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24350== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24350== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24350== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24350== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24350== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24350== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24350== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24350== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24350== by 0x1464DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24350== by 0x13EB23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24350== by 0x141FCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24350== by 0x141E6E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24350== by 0x142505: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24350== by 0x13CE05: main (TestDistributedTetrahedralMesh.cpp:19) +==24350== +==24350== Open file descriptor 116: +==24350== +==24350== +==24350== Open file descriptor 113: +==24350== +==24350== +==24350== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedTetrahedralMesh_valgrind.txt +==24350== +==24350== +==24350== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24350== +==24350== +==24350== +==24350== HEAP SUMMARY: +==24350== in use at exit: 620,790 bytes in 8,239 blocks +==24350== total heap usage: 3,378,471 allocs, 3,370,232 frees, 1,457,880,977 bytes allocated +==24350== +==24350== LEAK SUMMARY: +==24350== definitely lost: 0 bytes in 0 blocks +==24350== indirectly lost: 0 bytes in 0 blocks +==24350== possibly lost: 0 bytes in 0 blocks +==24350== still reachable: 2,576 bytes in 3 blocks +==24350== suppressed: 618,214 bytes in 8,236 blocks +==24350== Reachable blocks (those to which a pointer was found) are not shown. +==24350== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24350== +==24350== For lists of detected and suppressed errors, rerun with: -s +==24350== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestDistributedVector_valgrind.txt b/log-files/2024-10-14_17-51-53/TestDistributedVector_valgrind.txt new file mode 100644 index 000000000..2d847d7e7 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestDistributedVector_valgrind.txt @@ -0,0 +1,73 @@ +==24025== Memcheck, a memory error detector +==24025== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24025== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24025== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestDistributedVector -malloc_debug -malloc_dump -memory_info +==24025== Parent PID: 23966 +==24025== +==24025== +==24025== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24025== Open file descriptor 12: +==24025== at 0x607407D: pipe (pipe.c:29) +==24025== by 0xAEAD07D: ??? +==24025== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24025== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24025== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24025== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24025== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24025== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24025== by 0x129F94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24025== by 0x124F49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24025== by 0x127BA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24025== by 0x127A48: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24025== by 0x1280DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24025== by 0x123365: main (TestDistributedVector.cpp:19) +==24025== +==24025== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24025== at 0x6078A1C: __open_nocancel (open64_nocancel.c:39) +==24025== by 0x5FFCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24025== by 0x4934822: ??? +==24025== by 0x493496F: ??? +==24025== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24025== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24025== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24025== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24025== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24025== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24025== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24025== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24025== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24025== by 0x129F94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24025== by 0x124F49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24025== by 0x127BA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24025== by 0x127A48: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24025== by 0x1280DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24025== by 0x123365: main (TestDistributedVector.cpp:19) +==24025== +==24025== Open file descriptor 116: +==24025== +==24025== +==24025== Open file descriptor 113: +==24025== +==24025== +==24025== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedVector_valgrind.txt +==24025== +==24025== +==24025== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24025== +==24025== +==24025== +==24025== HEAP SUMMARY: +==24025== in use at exit: 617,870 bytes in 8,238 blocks +==24025== total heap usage: 46,123 allocs, 37,885 frees, 1,338,418,134 bytes allocated +==24025== +==24025== LEAK SUMMARY: +==24025== definitely lost: 0 bytes in 0 blocks +==24025== indirectly lost: 0 bytes in 0 blocks +==24025== possibly lost: 0 bytes in 0 blocks +==24025== still reachable: 24 bytes in 2 blocks +==24025== suppressed: 617,846 bytes in 8,236 blocks +==24025== Reachable blocks (those to which a pointer was found) are not shown. +==24025== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24025== +==24025== For lists of detected and suppressed errors, rerun with: -s +==24025== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestDivisionBiasTrackingModifier_valgrind.txt b/log-files/2024-10-14_17-51-53/TestDivisionBiasTrackingModifier_valgrind.txt new file mode 100644 index 000000000..35df08e2a --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestDivisionBiasTrackingModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26181== Memcheck, a memory error detector +==26181== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26181== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26181== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDivisionBiasTrackingModifier -malloc_debug -malloc_dump -memory_info +==26181== Parent PID: 23966 +==26181== +==26181== +==26181== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26181== Open file descriptor 12: +==26181== at 0xF84307D: pipe (pipe.c:29) +==26181== by 0x196BC07D: ??? +==26181== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26181== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26181== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26181== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26181== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26181== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26181== by 0x1FE694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26181== by 0x1F67DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26181== by 0x1F9F72: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26181== by 0x1F9E6D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26181== by 0x1FA481: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26181== by 0x1F4FD5: main (TestDivisionBiasTrackingModifier.cpp:18) +==26181== +==26181== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26181== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==26181== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26181== by 0xF13E822: ??? +==26181== by 0xF13E96F: ??? +==26181== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26181== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26181== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26181== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26181== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26181== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26181== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26181== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26181== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26181== by 0x1FE694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26181== by 0x1F67DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26181== by 0x1F9F72: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26181== by 0x1F9E6D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26181== by 0x1FA481: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26181== by 0x1F4FD5: main (TestDivisionBiasTrackingModifier.cpp:18) +==26181== +==26181== Open file descriptor 116: +==26181== +==26181== +==26181== Open file descriptor 113: +==26181== +==26181== +==26181== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDivisionBiasTrackingModifier_valgrind.txt +==26181== +==26181== +==26181== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26181== +==26181== +==26181== +==26181== HEAP SUMMARY: +==26181== in use at exit: 618,295 bytes in 8,235 blocks +==26181== total heap usage: 7,634,497 allocs, 7,626,262 frees, 2,727,039,553 bytes allocated +==26181== +==26181== LEAK SUMMARY: +==26181== definitely lost: 0 bytes in 0 blocks +==26181== indirectly lost: 0 bytes in 0 blocks +==26181== possibly lost: 0 bytes in 0 blocks +==26181== still reachable: 56 bytes in 3 blocks +==26181== suppressed: 618,239 bytes in 8,232 blocks +==26181== Reachable blocks (those to which a pointer was found) are not shown. +==26181== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26181== +==26181== For lists of detected and suppressed errors, rerun with: -s +==26181== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 32 from 32) diff --git a/log-files/2024-10-14_17-51-53/TestDynamicVentilation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestDynamicVentilation_valgrind.txt new file mode 100644 index 000000000..a4946966c --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestDynamicVentilation_valgrind.txt @@ -0,0 +1,73 @@ +==41054== Memcheck, a memory error detector +==41054== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41054== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41054== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestDynamicVentilation -malloc_debug -malloc_dump -memory_info +==41054== Parent PID: 23966 +==41054== +==41054== +==41054== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41054== Open file descriptor 12: +==41054== at 0x51FE07D: pipe (pipe.c:29) +==41054== by 0x107B407D: ??? +==41054== by 0xBA564CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41054== by 0x6779418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41054== by 0x6712D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41054== by 0x5409D38: PetscInitialize (pinit.c:924) +==41054== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41054== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41054== by 0x11807E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41054== by 0x11378D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41054== by 0x1160AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41054== by 0x115F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41054== by 0x1165E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41054== by 0x111BB5: main (TestDynamicVentilation.cpp:19) +==41054== +==41054== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41054== at 0x5202A1C: __open_nocancel (open64_nocancel.c:39) +==41054== by 0x5186BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41054== by 0x4A52822: ??? +==41054== by 0x4A5296F: ??? +==41054== by 0xBAFB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41054== by 0xBAFB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41054== by 0xBAB1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41054== by 0xBA562DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41054== by 0x6779418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41054== by 0x6712D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41054== by 0x5409D38: PetscInitialize (pinit.c:924) +==41054== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41054== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41054== by 0x11807E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41054== by 0x11378D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41054== by 0x1160AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41054== by 0x115F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41054== by 0x1165E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41054== by 0x111BB5: main (TestDynamicVentilation.cpp:19) +==41054== +==41054== Open file descriptor 116: +==41054== +==41054== +==41054== Open file descriptor 113: +==41054== +==41054== +==41054== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDynamicVentilation_valgrind.txt +==41054== +==41054== +==41054== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41054== +==41054== +==41054== +==41054== HEAP SUMMARY: +==41054== in use at exit: 618,334 bytes in 8,238 blocks +==41054== total heap usage: 74,109 allocs, 65,871 frees, 1,350,507,149 bytes allocated +==41054== +==41054== LEAK SUMMARY: +==41054== definitely lost: 0 bytes in 0 blocks +==41054== indirectly lost: 0 bytes in 0 blocks +==41054== possibly lost: 0 bytes in 0 blocks +==41054== still reachable: 24 bytes in 2 blocks +==41054== suppressed: 618,310 bytes in 8,236 blocks +==41054== Reachable blocks (those to which a pointer was found) are not shown. +==41054== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41054== +==41054== For lists of detected and suppressed errors, rerun with: -s +==41054== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestDynamicallyLoadedCellModels_valgrind.txt b/log-files/2024-10-14_17-51-53/TestDynamicallyLoadedCellModels_valgrind.txt new file mode 100644 index 000000000..04eb761d8 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestDynamicallyLoadedCellModels_valgrind.txt @@ -0,0 +1,73 @@ +==41635== Memcheck, a memory error detector +==41635== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41635== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41635== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestDynamicallyLoadedCellModels -malloc_debug -malloc_dump -memory_info +==41635== Parent PID: 23966 +==41635== +==41635== +==41635== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41635== Open file descriptor 12: +==41635== at 0x882407D: pipe (pipe.c:29) +==41635== by 0x1433707D: ??? +==41635== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41635== by 0x9F1F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41635== by 0x9EB8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41635== by 0x8BAFD38: PetscInitialize (pinit.c:924) +==41635== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41635== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41635== by 0x123164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41635== by 0x11E28F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41635== by 0x120CE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41635== by 0x120B88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41635== by 0x12121F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41635== by 0x119055: main (TestDynamicallyLoadedCellModels.cpp:19) +==41635== +==41635== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41635== at 0x8828A1C: __open_nocancel (open64_nocancel.c:39) +==41635== by 0x87ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41635== by 0x848C822: ??? +==41635== by 0x848C96F: ??? +==41635== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41635== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41635== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41635== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41635== by 0x9F1F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41635== by 0x9EB8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41635== by 0x8BAFD38: PetscInitialize (pinit.c:924) +==41635== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41635== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41635== by 0x123164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41635== by 0x11E28F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41635== by 0x120CE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41635== by 0x120B88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41635== by 0x12121F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41635== by 0x119055: main (TestDynamicallyLoadedCellModels.cpp:19) +==41635== +==41635== Open file descriptor 116: +==41635== +==41635== +==41635== Open file descriptor 113: +==41635== +==41635== +==41635== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDynamicallyLoadedCellModels_valgrind.txt +==41635== +==41635== +==41635== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41635== +==41635== +==41635== +==41635== HEAP SUMMARY: +==41635== in use at exit: 632,420 bytes in 8,265 blocks +==41635== total heap usage: 958,941 allocs, 950,676 frees, 1,914,137,678 bytes allocated +==41635== +==41635== LEAK SUMMARY: +==41635== definitely lost: 0 bytes in 0 blocks +==41635== indirectly lost: 0 bytes in 0 blocks +==41635== possibly lost: 0 bytes in 0 blocks +==41635== still reachable: 14,165 bytes in 33 blocks +==41635== suppressed: 618,255 bytes in 8,232 blocks +==41635== Reachable blocks (those to which a pointer was found) are not shown. +==41635== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41635== +==41635== For lists of detected and suppressed errors, rerun with: -s +==41635== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestEdgeInteriorSrn_valgrind.txt b/log-files/2024-10-14_17-51-53/TestEdgeInteriorSrn_valgrind.txt new file mode 100644 index 000000000..42278ddab --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestEdgeInteriorSrn_valgrind.txt @@ -0,0 +1,73 @@ +==25434== Memcheck, a memory error detector +==25434== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25434== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25434== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEdgeInteriorSrn -malloc_debug -malloc_dump -memory_info +==25434== Parent PID: 23966 +==25434== +==25434== +==25434== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25434== Open file descriptor 12: +==25434== at 0xF84307D: pipe (pipe.c:29) +==25434== by 0x196BC07D: ??? +==25434== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25434== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25434== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25434== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25434== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25434== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25434== by 0x130B3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25434== by 0x12B59D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25434== by 0x12E2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25434== by 0x12E14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25434== by 0x12E7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25434== by 0x1299C5: main (TestEdgeInteriorSrn.cpp:19) +==25434== +==25434== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25434== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==25434== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25434== by 0xF13E822: ??? +==25434== by 0xF13E96F: ??? +==25434== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25434== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25434== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25434== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25434== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25434== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25434== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25434== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25434== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25434== by 0x130B3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25434== by 0x12B59D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25434== by 0x12E2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25434== by 0x12E14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25434== by 0x12E7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25434== by 0x1299C5: main (TestEdgeInteriorSrn.cpp:19) +==25434== +==25434== Open file descriptor 116: +==25434== +==25434== +==25434== Open file descriptor 113: +==25434== +==25434== +==25434== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEdgeInteriorSrn_valgrind.txt +==25434== +==25434== +==25434== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25434== +==25434== +==25434== +==25434== HEAP SUMMARY: +==25434== in use at exit: 618,382 bytes in 8,240 blocks +==25434== total heap usage: 90,089 allocs, 81,849 frees, 1,342,348,850 bytes allocated +==25434== +==25434== LEAK SUMMARY: +==25434== definitely lost: 0 bytes in 0 blocks +==25434== indirectly lost: 0 bytes in 0 blocks +==25434== possibly lost: 0 bytes in 0 blocks +==25434== still reachable: 72 bytes in 4 blocks +==25434== suppressed: 618,310 bytes in 8,236 blocks +==25434== Reachable blocks (those to which a pointer was found) are not shown. +==25434== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25434== +==25434== For lists of detected and suppressed errors, rerun with: -s +==25434== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestEdge_valgrind.txt b/log-files/2024-10-14_17-51-53/TestEdge_valgrind.txt new file mode 100644 index 000000000..32f6a18d3 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestEdge_valgrind.txt @@ -0,0 +1,73 @@ +==24467== Memcheck, a memory error detector +==24467== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24467== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24467== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestEdge -malloc_debug -malloc_dump -memory_info +==24467== Parent PID: 23966 +==24467== +==24467== +==24467== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24467== Open file descriptor 12: +==24467== at 0x815307D: pipe (pipe.c:29) +==24467== by 0x100D407D: ??? +==24467== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24467== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24467== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24467== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24467== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24467== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24467== by 0x15EC55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24467== by 0x15930F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24467== by 0x15C29A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24467== by 0x15C196: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24467== by 0x15C7A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24467== by 0x157B05: main (TestEdge.cpp:18) +==24467== +==24467== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24467== at 0x8157A1C: __open_nocancel (open64_nocancel.c:39) +==24467== by 0x80DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24467== by 0x6597822: ??? +==24467== by 0x659796F: ??? +==24467== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24467== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24467== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24467== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24467== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24467== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24467== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24467== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24467== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24467== by 0x15EC55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24467== by 0x15930F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24467== by 0x15C29A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24467== by 0x15C196: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24467== by 0x15C7A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24467== by 0x157B05: main (TestEdge.cpp:18) +==24467== +==24467== Open file descriptor 116: +==24467== +==24467== +==24467== Open file descriptor 113: +==24467== +==24467== +==24467== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEdge_valgrind.txt +==24467== +==24467== +==24467== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24467== +==24467== +==24467== +==24467== HEAP SUMMARY: +==24467== in use at exit: 618,238 bytes in 8,238 blocks +==24467== total heap usage: 48,025 allocs, 39,787 frees, 1,338,476,050 bytes allocated +==24467== +==24467== LEAK SUMMARY: +==24467== definitely lost: 0 bytes in 0 blocks +==24467== indirectly lost: 0 bytes in 0 blocks +==24467== possibly lost: 0 bytes in 0 blocks +==24467== still reachable: 24 bytes in 2 blocks +==24467== suppressed: 618,214 bytes in 8,236 blocks +==24467== Reachable blocks (those to which a pointer was found) are not shown. +==24467== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24467== +==24467== For lists of detected and suppressed errors, rerun with: -s +==24467== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestElectroMechanicsExactSolution_valgrind.txt b/log-files/2024-10-14_17-51-53/TestElectroMechanicsExactSolution_valgrind.txt new file mode 100644 index 000000000..01da49398 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestElectroMechanicsExactSolution_valgrind.txt @@ -0,0 +1,73 @@ +==43166== Memcheck, a memory error detector +==43166== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43166== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43166== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectroMechanicsExactSolution -malloc_debug -malloc_dump -memory_info +==43166== Parent PID: 23966 +==43166== +==43166== +==43166== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43166== Open file descriptor 12: +==43166== at 0xAAF907D: pipe (pipe.c:29) +==43166== by 0x1433707D: ??? +==43166== by 0xD5A94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43166== by 0xA300418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43166== by 0xA299D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43166== by 0xAD02D38: PetscInitialize (pinit.c:924) +==43166== by 0xA1C21D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43166== by 0xA1C2227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43166== by 0x12D4D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43166== by 0x12824F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43166== by 0x12ADF6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43166== by 0x12ACF1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43166== by 0x12B305: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43166== by 0x126095: main (TestElectroMechanicsExactSolution.cpp:18) +==43166== +==43166== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43166== at 0xAAFDA1C: __open_nocancel (open64_nocancel.c:39) +==43166== by 0xAA81BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43166== by 0xA1FC822: ??? +==43166== by 0xA1FC96F: ??? +==43166== by 0xD64E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43166== by 0xD64E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43166== by 0xD604922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43166== by 0xD5A92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43166== by 0xA300418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43166== by 0xA299D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43166== by 0xAD02D38: PetscInitialize (pinit.c:924) +==43166== by 0xA1C21D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43166== by 0xA1C2227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43166== by 0x12D4D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43166== by 0x12824F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43166== by 0x12ADF6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43166== by 0x12ACF1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43166== by 0x12B305: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43166== by 0x126095: main (TestElectroMechanicsExactSolution.cpp:18) +==43166== +==43166== Open file descriptor 116: +==43166== +==43166== +==43166== Open file descriptor 113: +==43166== +==43166== +==43166== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectroMechanicsExactSolution_valgrind.txt +==43166== +==43166== +==43166== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43166== +==43166== +==43166== +==43166== HEAP SUMMARY: +==43166== in use at exit: 618,759 bytes in 8,244 blocks +==43166== total heap usage: 1,357,213 allocs, 1,348,969 frees, 1,489,734,325 bytes allocated +==43166== +==43166== LEAK SUMMARY: +==43166== definitely lost: 0 bytes in 0 blocks +==43166== indirectly lost: 0 bytes in 0 blocks +==43166== possibly lost: 0 bytes in 0 blocks +==43166== still reachable: 24 bytes in 2 blocks +==43166== suppressed: 618,735 bytes in 8,242 blocks +==43166== Reachable blocks (those to which a pointer was found) are not shown. +==43166== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43166== +==43166== For lists of detected and suppressed errors, rerun with: -s +==43166== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestElectroMechanicsProblemDefinition_valgrind.txt b/log-files/2024-10-14_17-51-53/TestElectroMechanicsProblemDefinition_valgrind.txt new file mode 100644 index 000000000..0f928021b --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestElectroMechanicsProblemDefinition_valgrind.txt @@ -0,0 +1,36 @@ +==43165== Memcheck, a memory error detector +==43165== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43165== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43165== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectroMechanicsProblemDefinition -malloc_debug -malloc_dump -memory_info +==43165== Parent PID: 23966 +==43165== +==43165== +==43165== FILE DESCRIPTORS: 7 open (3 std) at exit. +==43165== Open file descriptor 116: +==43165== +==43165== +==43165== Open file descriptor 113: +==43165== +==43165== +==43165== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectroMechanicsProblemDefinition_valgrind.txt +==43165== +==43165== +==43165== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43165== +==43165== +==43165== +==43165== HEAP SUMMARY: +==43165== in use at exit: 24 bytes in 2 blocks +==43165== total heap usage: 13,908 allocs, 13,906 frees, 1,516,395 bytes allocated +==43165== +==43165== LEAK SUMMARY: +==43165== definitely lost: 0 bytes in 0 blocks +==43165== indirectly lost: 0 bytes in 0 blocks +==43165== possibly lost: 0 bytes in 0 blocks +==43165== still reachable: 24 bytes in 2 blocks +==43165== suppressed: 0 bytes in 0 blocks +==43165== Reachable blocks (those to which a pointer was found) are not shown. +==43165== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43165== +==43165== For lists of detected and suppressed errors, rerun with: -s +==43165== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-10-14_17-51-53/TestElectrodes_valgrind.txt b/log-files/2024-10-14_17-51-53/TestElectrodes_valgrind.txt new file mode 100644 index 000000000..f9afe37f4 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestElectrodes_valgrind.txt @@ -0,0 +1,73 @@ +==43665== Memcheck, a memory error detector +==43665== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43665== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43665== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectrodes -malloc_debug -malloc_dump -memory_info +==43665== Parent PID: 23966 +==43665== +==43665== +==43665== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43665== Open file descriptor 12: +==43665== at 0xBD6B07D: pipe (pipe.c:29) +==43665== by 0x1433707D: ??? +==43665== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43665== by 0xB659418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43665== by 0xB5F2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43665== by 0xA2C6D38: PetscInitialize (pinit.c:924) +==43665== by 0xA19D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43665== by 0xA19D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43665== by 0x11B15C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43665== by 0x1167ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43665== by 0x118FC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43665== by 0x118E66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43665== by 0x1194FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43665== by 0x114C15: main (TestElectrodes.cpp:19) +==43665== +==43665== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43665== at 0xBD6FA1C: __open_nocancel (open64_nocancel.c:39) +==43665== by 0xBCF3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43665== by 0xB555822: ??? +==43665== by 0xB55596F: ??? +==43665== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43665== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43665== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43665== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43665== by 0xB659418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43665== by 0xB5F2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43665== by 0xA2C6D38: PetscInitialize (pinit.c:924) +==43665== by 0xA19D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43665== by 0xA19D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43665== by 0x11B15C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43665== by 0x1167ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43665== by 0x118FC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43665== by 0x118E66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43665== by 0x1194FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43665== by 0x114C15: main (TestElectrodes.cpp:19) +==43665== +==43665== Open file descriptor 116: +==43665== +==43665== +==43665== Open file descriptor 113: +==43665== +==43665== +==43665== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectrodes_valgrind.txt +==43665== +==43665== +==43665== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43665== +==43665== +==43665== +==43665== HEAP SUMMARY: +==43665== in use at exit: 618,350 bytes in 8,238 blocks +==43665== total heap usage: 264,949 allocs, 256,711 frees, 1,364,214,562 bytes allocated +==43665== +==43665== LEAK SUMMARY: +==43665== definitely lost: 0 bytes in 0 blocks +==43665== indirectly lost: 0 bytes in 0 blocks +==43665== possibly lost: 0 bytes in 0 blocks +==43665== still reachable: 24 bytes in 2 blocks +==43665== suppressed: 618,326 bytes in 8,236 blocks +==43665== Reachable blocks (those to which a pointer was found) are not shown. +==43665== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43665== +==43665== For lists of detected and suppressed errors, rerun with: -s +==43665== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestElementAttributes_valgrind.txt b/log-files/2024-10-14_17-51-53/TestElementAttributes_valgrind.txt new file mode 100644 index 000000000..821522b9f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestElementAttributes_valgrind.txt @@ -0,0 +1,73 @@ +==24376== Memcheck, a memory error detector +==24376== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24376== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24376== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestElementAttributes -malloc_debug -malloc_dump -memory_info +==24376== Parent PID: 23966 +==24376== +==24376== +==24376== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24376== Open file descriptor 12: +==24376== at 0x695907D: pipe (pipe.c:29) +==24376== by 0x100D407D: ??? +==24376== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24376== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24376== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24376== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24376== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24376== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24376== by 0x12CF3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24376== by 0x127D29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24376== by 0x12A996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24376== by 0x12A836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24376== by 0x12AECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24376== by 0x126145: main (TestElementAttributes.cpp:19) +==24376== +==24376== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24376== at 0x695DA1C: __open_nocancel (open64_nocancel.c:39) +==24376== by 0x68E1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24376== by 0x6597822: ??? +==24376== by 0x659796F: ??? +==24376== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24376== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24376== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24376== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24376== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24376== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24376== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24376== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24376== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24376== by 0x12CF3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24376== by 0x127D29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24376== by 0x12A996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24376== by 0x12A836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24376== by 0x12AECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24376== by 0x126145: main (TestElementAttributes.cpp:19) +==24376== +==24376== Open file descriptor 116: +==24376== +==24376== +==24376== Open file descriptor 113: +==24376== +==24376== +==24376== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElementAttributes_valgrind.txt +==24376== +==24376== +==24376== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24376== +==24376== +==24376== +==24376== HEAP SUMMARY: +==24376== in use at exit: 618,238 bytes in 8,238 blocks +==24376== total heap usage: 47,474 allocs, 39,236 frees, 1,338,442,313 bytes allocated +==24376== +==24376== LEAK SUMMARY: +==24376== definitely lost: 0 bytes in 0 blocks +==24376== indirectly lost: 0 bytes in 0 blocks +==24376== possibly lost: 0 bytes in 0 blocks +==24376== still reachable: 24 bytes in 2 blocks +==24376== suppressed: 618,214 bytes in 8,236 blocks +==24376== Reachable blocks (those to which a pointer was found) are not shown. +==24376== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24376== +==24376== For lists of detected and suppressed errors, rerun with: -s +==24376== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestElement_valgrind.txt b/log-files/2024-10-14_17-51-53/TestElement_valgrind.txt new file mode 100644 index 000000000..dbcf0d80b --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestElement_valgrind.txt @@ -0,0 +1,73 @@ +==24375== Memcheck, a memory error detector +==24375== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24375== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24375== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestElement -malloc_debug -malloc_dump -memory_info +==24375== Parent PID: 23966 +==24375== +==24375== +==24375== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24375== Open file descriptor 12: +==24375== at 0x6D4307D: pipe (pipe.c:29) +==24375== by 0x100D407D: ??? +==24375== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24375== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24375== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24375== by 0x701FD38: PetscInitialize (pinit.c:924) +==24375== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24375== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24375== by 0x12B5A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24375== by 0x12642D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24375== by 0x12932C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24375== by 0x1291CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24375== by 0x129863: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24375== by 0x124855: main (TestElement.cpp:19) +==24375== +==24375== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24375== at 0x6D47A1C: __open_nocancel (open64_nocancel.c:39) +==24375== by 0x6CCBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24375== by 0x6597822: ??? +==24375== by 0x659796F: ??? +==24375== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24375== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24375== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24375== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24375== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24375== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24375== by 0x701FD38: PetscInitialize (pinit.c:924) +==24375== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24375== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24375== by 0x12B5A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24375== by 0x12642D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24375== by 0x12932C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24375== by 0x1291CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24375== by 0x129863: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24375== by 0x124855: main (TestElement.cpp:19) +==24375== +==24375== Open file descriptor 116: +==24375== +==24375== +==24375== Open file descriptor 113: +==24375== +==24375== +==24375== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElement_valgrind.txt +==24375== +==24375== +==24375== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24375== +==24375== +==24375== +==24375== HEAP SUMMARY: +==24375== in use at exit: 618,238 bytes in 8,238 blocks +==24375== total heap usage: 65,902 allocs, 57,664 frees, 1,340,509,670 bytes allocated +==24375== +==24375== LEAK SUMMARY: +==24375== definitely lost: 0 bytes in 0 blocks +==24375== indirectly lost: 0 bytes in 0 blocks +==24375== possibly lost: 0 bytes in 0 blocks +==24375== still reachable: 24 bytes in 2 blocks +==24375== suppressed: 618,214 bytes in 8,236 blocks +==24375== Reachable blocks (those to which a pointer was found) are not shown. +==24375== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24375== +==24375== For lists of detected and suppressed errors, rerun with: -s +==24375== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestEllipticBoxDomainPdeModifier_valgrind.txt b/log-files/2024-10-14_17-51-53/TestEllipticBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..6ef2b2295 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestEllipticBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25459== Memcheck, a memory error detector +==25459== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25459== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25459== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEllipticBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25459== Parent PID: 23966 +==25459== +==25459== +==25459== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25459== Open file descriptor 12: +==25459== at 0x1109707D: pipe (pipe.c:29) +==25459== by 0x196BC07D: ??? +==25459== by 0x14C1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25459== by 0x1099F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25459== by 0x10938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25459== by 0xF62FD38: PetscInitialize (pinit.c:924) +==25459== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25459== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25459== by 0x13AB97: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25459== by 0x135563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25459== by 0x138174: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25459== by 0x13806F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25459== by 0x138683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25459== by 0x133D65: main (TestEllipticBoxDomainPdeModifier.cpp:18) +==25459== +==25459== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25459== at 0x1109BA1C: __open_nocancel (open64_nocancel.c:39) +==25459== by 0x1101FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25459== by 0xF4DB822: ??? +==25459== by 0xF4DB96F: ??? +==25459== by 0x14CBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25459== by 0x14CBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25459== by 0x14C75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25459== by 0x14C1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25459== by 0x1099F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25459== by 0x10938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25459== by 0xF62FD38: PetscInitialize (pinit.c:924) +==25459== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25459== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25459== by 0x13AB97: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25459== by 0x135563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25459== by 0x138174: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25459== by 0x13806F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25459== by 0x138683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25459== by 0x133D65: main (TestEllipticBoxDomainPdeModifier.cpp:18) +==25459== +==25459== Open file descriptor 116: +==25459== +==25459== +==25459== Open file descriptor 113: +==25459== +==25459== +==25459== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEllipticBoxDomainPdeModifier_valgrind.txt +==25459== +==25459== +==25459== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25459== +==25459== +==25459== +==25459== HEAP SUMMARY: +==25459== in use at exit: 618,295 bytes in 8,235 blocks +==25459== total heap usage: 5,616,019 allocs, 5,607,784 frees, 1,928,661,168 bytes allocated +==25459== +==25459== LEAK SUMMARY: +==25459== definitely lost: 0 bytes in 0 blocks +==25459== indirectly lost: 0 bytes in 0 blocks +==25459== possibly lost: 0 bytes in 0 blocks +==25459== still reachable: 56 bytes in 3 blocks +==25459== suppressed: 618,239 bytes in 8,232 blocks +==25459== Reachable blocks (those to which a pointer was found) are not shown. +==25459== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25459== +==25459== For lists of detected and suppressed errors, rerun with: -s +==25459== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestEllipticGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-10-14_17-51-53/TestEllipticGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..bad4ce768 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestEllipticGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25466== Memcheck, a memory error detector +==25466== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25466== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25466== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEllipticGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25466== Parent PID: 23966 +==25466== +==25466== +==25466== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25466== Open file descriptor 12: +==25466== at 0x1117E07D: pipe (pipe.c:29) +==25466== by 0x196BC07D: ??? +==25466== by 0x14C1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25466== by 0x1099F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25466== by 0x10938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25466== by 0xF62FD38: PetscInitialize (pinit.c:924) +==25466== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25466== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25466== by 0x13FC51: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25466== by 0x139D3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25466== by 0x13CDD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25466== by 0x13CC74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25466== by 0x13D30B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25466== by 0x138165: main (TestEllipticGrowingDomainPdeModifier.cpp:19) +==25466== +==25466== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25466== at 0x11182A1C: __open_nocancel (open64_nocancel.c:39) +==25466== by 0x11106BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25466== by 0xF4DB822: ??? +==25466== by 0xF4DB96F: ??? +==25466== by 0x14CBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25466== by 0x14CBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25466== by 0x14C75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25466== by 0x14C1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25466== by 0x1099F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25466== by 0x10938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25466== by 0xF62FD38: PetscInitialize (pinit.c:924) +==25466== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25466== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25466== by 0x13FC51: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25466== by 0x139D3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25466== by 0x13CDD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25466== by 0x13CC74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25466== by 0x13D30B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25466== by 0x138165: main (TestEllipticGrowingDomainPdeModifier.cpp:19) +==25466== +==25466== Open file descriptor 116: +==25466== +==25466== +==25466== Open file descriptor 113: +==25466== +==25466== +==25466== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEllipticGrowingDomainPdeModifier_valgrind.txt +==25466== +==25466== +==25466== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25466== +==25466== +==25466== +==25466== HEAP SUMMARY: +==25466== in use at exit: 618,366 bytes in 8,239 blocks +==25466== total heap usage: 1,610,271 allocs, 1,602,032 frees, 1,438,380,298 bytes allocated +==25466== +==25466== LEAK SUMMARY: +==25466== definitely lost: 0 bytes in 0 blocks +==25466== indirectly lost: 0 bytes in 0 blocks +==25466== possibly lost: 0 bytes in 0 blocks +==25466== still reachable: 56 bytes in 3 blocks +==25466== suppressed: 618,310 bytes in 8,236 blocks +==25466== Reachable blocks (those to which a pointer was found) are not shown. +==25466== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25466== +==25466== For lists of detected and suppressed errors, rerun with: -s +==25466== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestException_valgrind.txt b/log-files/2024-10-14_17-51-53/TestException_valgrind.txt new file mode 100644 index 000000000..c8124086b --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestException_valgrind.txt @@ -0,0 +1,73 @@ +==24026== Memcheck, a memory error detector +==24026== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24026== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24026== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestException -malloc_debug -malloc_dump -memory_info +==24026== Parent PID: 23966 +==24026== +==24026== +==24026== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24026== Open file descriptor 12: +==24026== at 0x4CB207D: pipe (pipe.c:29) +==24026== by 0xAEAD07D: ??? +==24026== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24026== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24026== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24026== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24026== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24026== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24026== by 0x114E36: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24026== by 0x1105AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24026== by 0x112ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24026== by 0x112D78: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24026== by 0x11340F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24026== by 0x10E9D5: main (TestException.cpp:19) +==24026== +==24026== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24026== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24026== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24026== by 0x4934822: ??? +==24026== by 0x493496F: ??? +==24026== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24026== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24026== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24026== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24026== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24026== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24026== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24026== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24026== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24026== by 0x114E36: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24026== by 0x1105AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24026== by 0x112ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24026== by 0x112D78: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24026== by 0x11340F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24026== by 0x10E9D5: main (TestException.cpp:19) +==24026== +==24026== Open file descriptor 116: +==24026== +==24026== +==24026== Open file descriptor 113: +==24026== +==24026== +==24026== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestException_valgrind.txt +==24026== +==24026== +==24026== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24026== +==24026== +==24026== +==24026== HEAP SUMMARY: +==24026== in use at exit: 617,870 bytes in 8,238 blocks +==24026== total heap usage: 45,183 allocs, 36,945 frees, 1,338,186,728 bytes allocated +==24026== +==24026== LEAK SUMMARY: +==24026== definitely lost: 0 bytes in 0 blocks +==24026== indirectly lost: 0 bytes in 0 blocks +==24026== possibly lost: 0 bytes in 0 blocks +==24026== still reachable: 24 bytes in 2 blocks +==24026== suppressed: 617,846 bytes in 8,236 blocks +==24026== Reachable blocks (those to which a pointer was found) are not shown. +==24026== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24026== +==24026== For lists of detected and suppressed errors, rerun with: -s +==24026== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestExecutableSupport_valgrind.txt b/log-files/2024-10-14_17-51-53/TestExecutableSupport_valgrind.txt new file mode 100644 index 000000000..fd4f31538 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestExecutableSupport_valgrind.txt @@ -0,0 +1,79 @@ +==24027== Memcheck, a memory error detector +==24027== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24027== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24027== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestExecutableSupport -malloc_debug -malloc_dump -memory_info +==24027== Parent PID: 23966 +==24027== +==24027== +==24027== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24027== Open file descriptor 12: +==24027== at 0x4CB207D: pipe (pipe.c:29) +==24027== by 0xAEAD07D: ??? +==24027== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24027== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24027== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24027== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24027== by 0x48D632C: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) +==24027== by 0x48D7EC0: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:455) +==24027== by 0x1120FD: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) +==24027== by 0x1124BC: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) +==24027== by 0x10D6CA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==24027== by 0x1103DA: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==24027== by 0x1102BF: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==24027== by 0x110165: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==24027== by 0x110027: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24027== by 0x11063B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24027== by 0x10C695: main (TestExecutableSupport.cpp:18) +==24027== +==24027== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24027== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24027== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24027== by 0x4934822: ??? +==24027== by 0x493496F: ??? +==24027== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24027== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24027== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24027== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24027== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24027== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24027== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24027== by 0x48D632C: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) +==24027== by 0x48D7EC0: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:455) +==24027== by 0x1120FD: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) +==24027== by 0x1124BC: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) +==24027== by 0x10D6CA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==24027== by 0x1103DA: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==24027== by 0x1102BF: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==24027== by 0x110165: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==24027== by 0x110027: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24027== by 0x11063B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24027== by 0x10C695: main (TestExecutableSupport.cpp:18) +==24027== +==24027== Open file descriptor 116: +==24027== +==24027== +==24027== Open file descriptor 113: +==24027== +==24027== +==24027== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExecutableSupport_valgrind.txt +==24027== +==24027== +==24027== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24027== +==24027== +==24027== +==24027== HEAP SUMMARY: +==24027== in use at exit: 617,870 bytes in 8,238 blocks +==24027== total heap usage: 45,223 allocs, 36,985 frees, 1,338,262,566 bytes allocated +==24027== +==24027== LEAK SUMMARY: +==24027== definitely lost: 0 bytes in 0 blocks +==24027== indirectly lost: 0 bytes in 0 blocks +==24027== possibly lost: 0 bytes in 0 blocks +==24027== still reachable: 24 bytes in 2 blocks +==24027== suppressed: 617,846 bytes in 8,236 blocks +==24027== Reachable blocks (those to which a pointer was found) are not shown. +==24027== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24027== +==24027== For lists of detected and suppressed errors, rerun with: -s +==24027== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestExplicitCardiacMechanicsSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestExplicitCardiacMechanicsSolver_valgrind.txt new file mode 100644 index 000000000..5d47efdcc --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestExplicitCardiacMechanicsSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43249== Memcheck, a memory error detector +==43249== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43249== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43249== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExplicitCardiacMechanicsSolver -malloc_debug -malloc_dump -memory_info +==43249== Parent PID: 23966 +==43249== +==43249== +==43249== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43249== Open file descriptor 12: +==43249== at 0xAB1D07D: pipe (pipe.c:29) +==43249== by 0x1433907D: ??? +==43249== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43249== by 0xC096418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43249== by 0xC02FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43249== by 0xAD26D38: PetscInitialize (pinit.c:924) +==43249== by 0xA31D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43249== by 0xA31D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43249== by 0x12399A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43249== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43249== by 0x1218A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43249== by 0x121746: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43249== by 0x121DDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43249== by 0x11D175: main (TestExplicitCardiacMechanicsSolver.cpp:19) +==43249== +==43249== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43249== at 0xAB21A1C: __open_nocancel (open64_nocancel.c:39) +==43249== by 0xAAA5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43249== by 0xA357822: ??? +==43249== by 0xA35796F: ??? +==43249== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43249== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43249== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43249== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43249== by 0xC096418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43249== by 0xC02FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43249== by 0xAD26D38: PetscInitialize (pinit.c:924) +==43249== by 0xA31D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43249== by 0xA31D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43249== by 0x12399A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43249== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43249== by 0x1218A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43249== by 0x121746: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43249== by 0x121DDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43249== by 0x11D175: main (TestExplicitCardiacMechanicsSolver.cpp:19) +==43249== +==43249== Open file descriptor 116: +==43249== +==43249== +==43249== Open file descriptor 113: +==43249== +==43249== +==43249== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExplicitCardiacMechanicsSolver_valgrind.txt +==43249== +==43249== +==43249== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43249== +==43249== +==43249== +==43249== HEAP SUMMARY: +==43249== in use at exit: 618,279 bytes in 8,234 blocks +==43249== total heap usage: 1,798,671 allocs, 1,790,437 frees, 1,540,122,349 bytes allocated +==43249== +==43249== LEAK SUMMARY: +==43249== definitely lost: 0 bytes in 0 blocks +==43249== indirectly lost: 0 bytes in 0 blocks +==43249== possibly lost: 0 bytes in 0 blocks +==43249== still reachable: 24 bytes in 2 blocks +==43249== suppressed: 618,255 bytes in 8,232 blocks +==43249== Reachable blocks (those to which a pointer was found) are not shown. +==43249== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43249== +==43249== For lists of detected and suppressed errors, rerun with: -s +==43249== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-10-14_17-51-53/TestExtendedBidomainProblem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestExtendedBidomainProblem_valgrind.txt new file mode 100644 index 000000000..6c272f3c2 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestExtendedBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41252== Memcheck, a memory error detector +==41252== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41252== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41252== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainProblem -malloc_debug -malloc_dump -memory_info +==41252== Parent PID: 23966 +==41252== +==41252== +==41252== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41252== Open file descriptor 12: +==41252== at 0xA99407D: pipe (pipe.c:29) +==41252== by 0x1433707D: ??? +==41252== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41252== by 0xA282418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41252== by 0xA21BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41252== by 0xAD1FD38: PetscInitialize (pinit.c:924) +==41252== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41252== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41252== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41252== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41252== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41252== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41252== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41252== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) +==41252== +==41252== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41252== at 0xA998A1C: __open_nocancel (open64_nocancel.c:39) +==41252== by 0xA91CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41252== by 0xA17E822: ??? +==41252== by 0xA17E96F: ??? +==41252== by 0xDA036DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41252== by 0xDA03938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41252== by 0xD9B9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41252== by 0xD95E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41252== by 0xA282418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41252== by 0xA21BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41252== by 0xAD1FD38: PetscInitialize (pinit.c:924) +==41252== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41252== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41252== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41252== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41252== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41252== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41252== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41252== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) +==41252== +==41252== Open file descriptor 116: +==41252== +==41252== +==41252== Open file descriptor 113: +==41252== +==41252== +==41252== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainProblem_valgrind.txt +==41252== +==41252== +==41252== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41252== +==41252== +==41252== +==41252== HEAP SUMMARY: +==41252== in use at exit: 618,759 bytes in 8,244 blocks +==41252== total heap usage: 2,372,931 allocs, 2,364,687 frees, 2,468,286,360 bytes allocated +==41252== +==41252== LEAK SUMMARY: +==41252== definitely lost: 0 bytes in 0 blocks +==41252== indirectly lost: 0 bytes in 0 blocks +==41252== possibly lost: 0 bytes in 0 blocks +==41252== still reachable: 24 bytes in 2 blocks +==41252== suppressed: 618,735 bytes in 8,242 blocks +==41252== Reachable blocks (those to which a pointer was found) are not shown. +==41252== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41252== +==41252== For lists of detected and suppressed errors, rerun with: -s +==41252== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestExtendedBidomainTissue_valgrind.txt b/log-files/2024-10-14_17-51-53/TestExtendedBidomainTissue_valgrind.txt new file mode 100644 index 000000000..7892ade08 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestExtendedBidomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==41242== Memcheck, a memory error detector +==41242== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41242== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41242== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainTissue -malloc_debug -malloc_dump -memory_info +==41242== Parent PID: 23966 +==41242== +==41242== +==41242== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41242== Open file descriptor 12: +==41242== at 0xBBAA07D: pipe (pipe.c:29) +==41242== by 0x1433707D: ??? +==41242== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41242== by 0xBF27418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41242== by 0xBEC0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41242== by 0xA25FD38: PetscInitialize (pinit.c:924) +==41242== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41242== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41242== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41242== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41242== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41242== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41242== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41242== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) +==41242== +==41242== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41242== at 0xBBAEA1C: __open_nocancel (open64_nocancel.c:39) +==41242== by 0xBB32BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41242== by 0xA10B822: ??? +==41242== by 0xA10B96F: ??? +==41242== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41242== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41242== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41242== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41242== by 0xBF27418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41242== by 0xBEC0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41242== by 0xA25FD38: PetscInitialize (pinit.c:924) +==41242== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41242== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41242== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41242== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41242== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41242== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41242== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41242== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) +==41242== +==41242== Open file descriptor 116: +==41242== +==41242== +==41242== Open file descriptor 113: +==41242== +==41242== +==41242== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainTissue_valgrind.txt +==41242== +==41242== +==41242== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41242== +==41242== +==41242== +==41242== HEAP SUMMARY: +==41242== in use at exit: 618,350 bytes in 8,238 blocks +==41242== total heap usage: 120,936 allocs, 112,698 frees, 1,354,349,719 bytes allocated +==41242== +==41242== LEAK SUMMARY: +==41242== definitely lost: 0 bytes in 0 blocks +==41242== indirectly lost: 0 bytes in 0 blocks +==41242== possibly lost: 0 bytes in 0 blocks +==41242== still reachable: 24 bytes in 2 blocks +==41242== suppressed: 618,326 bytes in 8,236 blocks +==41242== Reachable blocks (those to which a pointer was found) are not shown. +==41242== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41242== +==41242== For lists of detected and suppressed errors, rerun with: -s +==41242== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestExtendedVsBidomainProblem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestExtendedVsBidomainProblem_valgrind.txt new file mode 100644 index 000000000..8a7032b0d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestExtendedVsBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41233== Memcheck, a memory error detector +==41233== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41233== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41233== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedVsBidomainProblem -malloc_debug -malloc_dump -memory_info +==41233== Parent PID: 23966 +==41233== +==41233== +==41233== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41233== Open file descriptor 12: +==41233== at 0xABFA07D: pipe (pipe.c:29) +==41233== by 0x1433707D: ??? +==41233== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41233== by 0xC2F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41233== by 0xC28ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41233== by 0xAF85D38: PetscInitialize (pinit.c:924) +==41233== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41233== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41233== by 0x12E254: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41233== by 0x128EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41233== by 0x12C1D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41233== by 0x12C076: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41233== by 0x12C70D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41233== by 0x1272D5: main (TestExtendedVsBidomainProblem.cpp:19) +==41233== +==41233== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41233== at 0xABFEA1C: __open_nocancel (open64_nocancel.c:39) +==41233== by 0xAB82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41233== by 0xA51B822: ??? +==41233== by 0xA51B96F: ??? +==41233== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41233== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41233== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41233== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41233== by 0xC2F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41233== by 0xC28ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41233== by 0xAF85D38: PetscInitialize (pinit.c:924) +==41233== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41233== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41233== by 0x12E254: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41233== by 0x128EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41233== by 0x12C1D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41233== by 0x12C076: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41233== by 0x12C70D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41233== by 0x1272D5: main (TestExtendedVsBidomainProblem.cpp:19) +==41233== +==41233== Open file descriptor 116: +==41233== +==41233== +==41233== Open file descriptor 113: +==41233== +==41233== +==41233== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedVsBidomainProblem_valgrind.txt +==41233== +==41233== +==41233== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41233== +==41233== +==41233== +==41233== HEAP SUMMARY: +==41233== in use at exit: 618,830 bytes in 8,248 blocks +==41233== total heap usage: 466,062 allocs, 457,814 frees, 1,446,178,166 bytes allocated +==41233== +==41233== LEAK SUMMARY: +==41233== definitely lost: 0 bytes in 0 blocks +==41233== indirectly lost: 0 bytes in 0 blocks +==41233== possibly lost: 0 bytes in 0 blocks +==41233== still reachable: 24 bytes in 2 blocks +==41233== suppressed: 618,806 bytes in 8,246 blocks +==41233== Reachable blocks (those to which a pointer was found) are not shown. +==41233== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41233== +==41233== For lists of detected and suppressed errors, rerun with: -s +==41233== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 64 from 38) diff --git a/log-files/2024-10-14_17-51-53/TestExtrinsicPullModifier_valgrind.txt b/log-files/2024-10-14_17-51-53/TestExtrinsicPullModifier_valgrind.txt new file mode 100644 index 000000000..df032978d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestExtrinsicPullModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26263== Memcheck, a memory error detector +==26263== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26263== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26263== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestExtrinsicPullModifier -malloc_debug -malloc_dump -memory_info +==26263== Parent PID: 23966 +==26263== +==26263== +==26263== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26263== Open file descriptor 12: +==26263== at 0xF84307D: pipe (pipe.c:29) +==26263== by 0x196BC07D: ??? +==26263== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26263== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26263== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26263== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26263== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26263== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26263== by 0x1FC280: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26263== by 0x1F453F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26263== by 0x1F7DA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26263== by 0x1F7CA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26263== by 0x1F82B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26263== by 0x1F2D35: main (TestExtrinsicPullModifier.cpp:18) +==26263== +==26263== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26263== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==26263== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26263== by 0xF13E822: ??? +==26263== by 0xF13E96F: ??? +==26263== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26263== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26263== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26263== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26263== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26263== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26263== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26263== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26263== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26263== by 0x1FC280: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26263== by 0x1F453F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26263== by 0x1F7DA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26263== by 0x1F7CA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26263== by 0x1F82B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26263== by 0x1F2D35: main (TestExtrinsicPullModifier.cpp:18) +==26263== +==26263== Open file descriptor 116: +==26263== +==26263== +==26263== Open file descriptor 113: +==26263== +==26263== +==26263== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtrinsicPullModifier_valgrind.txt +==26263== +==26263== +==26263== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26263== +==26263== +==26263== +==26263== HEAP SUMMARY: +==26263== in use at exit: 618,366 bytes in 8,239 blocks +==26263== total heap usage: 223,576 allocs, 215,337 frees, 1,365,677,538 bytes allocated +==26263== +==26263== LEAK SUMMARY: +==26263== definitely lost: 0 bytes in 0 blocks +==26263== indirectly lost: 0 bytes in 0 blocks +==26263== possibly lost: 0 bytes in 0 blocks +==26263== still reachable: 56 bytes in 3 blocks +==26263== suppressed: 618,310 bytes in 8,236 blocks +==26263== Reachable blocks (those to which a pointer was found) are not shown. +==26263== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26263== +==26263== For lists of detected and suppressed errors, rerun with: -s +==26263== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestFemlabMeshReader_valgrind.txt b/log-files/2024-10-14_17-51-53/TestFemlabMeshReader_valgrind.txt new file mode 100644 index 000000000..d905ac33b --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestFemlabMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24593== Memcheck, a memory error detector +==24593== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24593== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24593== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestFemlabMeshReader -malloc_debug -malloc_dump -memory_info +==24593== Parent PID: 23966 +==24593== +==24593== +==24593== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24593== Open file descriptor 12: +==24593== at 0x691707D: pipe (pipe.c:29) +==24593== by 0x100D407D: ??? +==24593== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24593== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24593== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24593== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24593== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24593== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24593== by 0x116D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24593== by 0x11236D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24593== by 0x114DBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24593== by 0x114C5E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24593== by 0x1152F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24593== by 0x110795: main (TestFemlabMeshReader.cpp:19) +==24593== +==24593== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24593== at 0x691BA1C: __open_nocancel (open64_nocancel.c:39) +==24593== by 0x689FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24593== by 0x6597822: ??? +==24593== by 0x659796F: ??? +==24593== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24593== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24593== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24593== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24593== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24593== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24593== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24593== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24593== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24593== by 0x116D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24593== by 0x11236D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24593== by 0x114DBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24593== by 0x114C5E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24593== by 0x1152F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24593== by 0x110795: main (TestFemlabMeshReader.cpp:19) +==24593== +==24593== Open file descriptor 116: +==24593== +==24593== +==24593== Open file descriptor 113: +==24593== +==24593== +==24593== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFemlabMeshReader_valgrind.txt +==24593== +==24593== +==24593== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24593== +==24593== +==24593== +==24593== HEAP SUMMARY: +==24593== in use at exit: 618,238 bytes in 8,238 blocks +==24593== total heap usage: 68,513 allocs, 60,275 frees, 1,339,840,756 bytes allocated +==24593== +==24593== LEAK SUMMARY: +==24593== definitely lost: 0 bytes in 0 blocks +==24593== indirectly lost: 0 bytes in 0 blocks +==24593== possibly lost: 0 bytes in 0 blocks +==24593== still reachable: 24 bytes in 2 blocks +==24593== suppressed: 618,214 bytes in 8,236 blocks +==24593== Reachable blocks (those to which a pointer was found) are not shown. +==24593== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24593== +==24593== For lists of detected and suppressed errors, rerun with: -s +==24593== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt new file mode 100644 index 000000000..7c75a0744 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41261== Memcheck, a memory error detector +==41261== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41261== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41261== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreReaderAbilityExtendedBidomainProblem -malloc_debug -malloc_dump -memory_info +==41261== Parent PID: 23966 +==41261== +==41261== +==41261== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41261== Open file descriptor 12: +==41261== at 0xA7EA07D: pipe (pipe.c:29) +==41261== by 0x1433707D: ??? +==41261== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41261== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41261== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41261== by 0xAB73D38: PetscInitialize (pinit.c:924) +==41261== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41261== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41261== by 0x128E4C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41261== by 0x123553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41261== by 0x126214: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41261== by 0x12610F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41261== by 0x126723: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41261== by 0x121D55: main (TestFibreReaderAbilityExtendedBidomainProblem.cpp:18) +==41261== +==41261== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41261== at 0xA7EEA1C: __open_nocancel (open64_nocancel.c:39) +==41261== by 0xA772BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41261== by 0xA10B822: ??? +==41261== by 0xA10B96F: ??? +==41261== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41261== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41261== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41261== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41261== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41261== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41261== by 0xAB73D38: PetscInitialize (pinit.c:924) +==41261== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41261== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41261== by 0x128E4C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41261== by 0x123553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41261== by 0x126214: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41261== by 0x12610F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41261== by 0x126723: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41261== by 0x121D55: main (TestFibreReaderAbilityExtendedBidomainProblem.cpp:18) +==41261== +==41261== Open file descriptor 116: +==41261== +==41261== +==41261== Open file descriptor 113: +==41261== +==41261== +==41261== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt +==41261== +==41261== +==41261== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41261== +==41261== +==41261== +==41261== HEAP SUMMARY: +==41261== in use at exit: 618,350 bytes in 8,238 blocks +==41261== total heap usage: 115,877 allocs, 107,639 frees, 1,342,959,957 bytes allocated +==41261== +==41261== LEAK SUMMARY: +==41261== definitely lost: 0 bytes in 0 blocks +==41261== indirectly lost: 0 bytes in 0 blocks +==41261== possibly lost: 0 bytes in 0 blocks +==41261== still reachable: 24 bytes in 2 blocks +==41261== suppressed: 618,326 bytes in 8,236 blocks +==41261== Reachable blocks (those to which a pointer was found) are not shown. +==41261== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41261== +==41261== For lists of detected and suppressed errors, rerun with: -s +==41261== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestFibreReader_valgrind.txt b/log-files/2024-10-14_17-51-53/TestFibreReader_valgrind.txt new file mode 100644 index 000000000..26be44fb0 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestFibreReader_valgrind.txt @@ -0,0 +1,36 @@ +==41295== Memcheck, a memory error detector +==41295== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41295== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41295== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreReader -malloc_debug -malloc_dump -memory_info +==41295== Parent PID: 23966 +==41295== +==41295== +==41295== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41295== Open file descriptor 116: +==41295== +==41295== +==41295== Open file descriptor 113: +==41295== +==41295== +==41295== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreReader_valgrind.txt +==41295== +==41295== +==41295== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41295== +==41295== +==41295== +==41295== HEAP SUMMARY: +==41295== in use at exit: 24 bytes in 2 blocks +==41295== total heap usage: 9,356 allocs, 9,354 frees, 3,309,570 bytes allocated +==41295== +==41295== LEAK SUMMARY: +==41295== definitely lost: 0 bytes in 0 blocks +==41295== indirectly lost: 0 bytes in 0 blocks +==41295== possibly lost: 0 bytes in 0 blocks +==41295== still reachable: 24 bytes in 2 blocks +==41295== suppressed: 0 bytes in 0 blocks +==41295== Reachable blocks (those to which a pointer was found) are not shown. +==41295== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41295== +==41295== For lists of detected and suppressed errors, rerun with: -s +==41295== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-10-14_17-51-53/TestFibreWriter_valgrind.txt b/log-files/2024-10-14_17-51-53/TestFibreWriter_valgrind.txt new file mode 100644 index 000000000..ca4caa313 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestFibreWriter_valgrind.txt @@ -0,0 +1,73 @@ +==41297== Memcheck, a memory error detector +==41297== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41297== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41297== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreWriter -malloc_debug -malloc_dump -memory_info +==41297== Parent PID: 23966 +==41297== +==41297== +==41297== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41297== Open file descriptor 12: +==41297== at 0x9A2407D: pipe (pipe.c:29) +==41297== by 0x1433907D: ??? +==41297== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41297== by 0x9659418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41297== by 0x95F2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41297== by 0x82C6D38: PetscInitialize (pinit.c:924) +==41297== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41297== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41297== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41297== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41297== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41297== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41297== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41297== by 0x113DD5: main (TestFibreWriter.cpp:18) +==41297== +==41297== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41297== at 0x9A28A1C: __open_nocancel (open64_nocancel.c:39) +==41297== by 0x99ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41297== by 0x9555822: ??? +==41297== by 0x955596F: ??? +==41297== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41297== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41297== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41297== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41297== by 0x9659418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41297== by 0x95F2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41297== by 0x82C6D38: PetscInitialize (pinit.c:924) +==41297== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41297== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41297== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41297== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41297== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41297== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41297== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41297== by 0x113DD5: main (TestFibreWriter.cpp:18) +==41297== +==41297== Open file descriptor 116: +==41297== +==41297== +==41297== Open file descriptor 113: +==41297== +==41297== +==41297== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreWriter_valgrind.txt +==41297== +==41297== +==41297== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41297== +==41297== +==41297== +==41297== HEAP SUMMARY: +==41297== in use at exit: 618,350 bytes in 8,238 blocks +==41297== total heap usage: 57,351 allocs, 49,113 frees, 1,339,751,277 bytes allocated +==41297== +==41297== LEAK SUMMARY: +==41297== definitely lost: 0 bytes in 0 blocks +==41297== indirectly lost: 0 bytes in 0 blocks +==41297== possibly lost: 0 bytes in 0 blocks +==41297== still reachable: 24 bytes in 2 blocks +==41297== suppressed: 618,326 bytes in 8,236 blocks +==41297== Reachable blocks (those to which a pointer was found) are not shown. +==41297== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41297== +==41297== For lists of detected and suppressed errors, rerun with: -s +==41297== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestFileComparison_valgrind.txt b/log-files/2024-10-14_17-51-53/TestFileComparison_valgrind.txt new file mode 100644 index 000000000..d22614d7f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestFileComparison_valgrind.txt @@ -0,0 +1,73 @@ +==24059== Memcheck, a memory error detector +==24059== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24059== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24059== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFileComparison -malloc_debug -malloc_dump -memory_info +==24059== Parent PID: 23966 +==24059== +==24059== +==24059== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24059== Open file descriptor 12: +==24059== at 0x4CB207D: pipe (pipe.c:29) +==24059== by 0xAEAD07D: ??? +==24059== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24059== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24059== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24059== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24059== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24059== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24059== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24059== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24059== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24059== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24059== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24059== by 0x110B35: main (TestFileComparison.cpp:18) +==24059== +==24059== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24059== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24059== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24059== by 0x4934822: ??? +==24059== by 0x493496F: ??? +==24059== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24059== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24059== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24059== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24059== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24059== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24059== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24059== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24059== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24059== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24059== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24059== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24059== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24059== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24059== by 0x110B35: main (TestFileComparison.cpp:18) +==24059== +==24059== Open file descriptor 116: +==24059== +==24059== +==24059== Open file descriptor 113: +==24059== +==24059== +==24059== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFileComparison_valgrind.txt +==24059== +==24059== +==24059== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24059== +==24059== +==24059== +==24059== HEAP SUMMARY: +==24059== in use at exit: 617,870 bytes in 8,238 blocks +==24059== total heap usage: 45,389 allocs, 37,151 frees, 1,338,617,731 bytes allocated +==24059== +==24059== LEAK SUMMARY: +==24059== definitely lost: 0 bytes in 0 blocks +==24059== indirectly lost: 0 bytes in 0 blocks +==24059== possibly lost: 0 bytes in 0 blocks +==24059== still reachable: 24 bytes in 2 blocks +==24059== suppressed: 617,846 bytes in 8,236 blocks +==24059== Reachable blocks (those to which a pointer was found) are not shown. +==24059== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24059== +==24059== For lists of detected and suppressed errors, rerun with: -s +==24059== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestFileFinder_valgrind.txt b/log-files/2024-10-14_17-51-53/TestFileFinder_valgrind.txt new file mode 100644 index 000000000..f8f3f0af6 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestFileFinder_valgrind.txt @@ -0,0 +1,73 @@ +==24058== Memcheck, a memory error detector +==24058== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24058== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24058== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFileFinder -malloc_debug -malloc_dump -memory_info +==24058== Parent PID: 23966 +==24058== +==24058== +==24058== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24058== Open file descriptor 12: +==24058== at 0x616907D: pipe (pipe.c:29) +==24058== by 0xAEAD07D: ??? +==24058== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24058== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24058== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24058== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24058== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24058== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24058== by 0x118727: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24058== by 0x113B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24058== by 0x1166DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24058== by 0x11657A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24058== by 0x116C11: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24058== by 0x111FB5: main (TestFileFinder.cpp:19) +==24058== +==24058== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24058== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24058== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24058== by 0x5CB2822: ??? +==24058== by 0x5CB296F: ??? +==24058== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24058== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24058== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24058== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24058== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24058== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24058== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24058== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24058== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24058== by 0x118727: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24058== by 0x113B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24058== by 0x1166DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24058== by 0x11657A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24058== by 0x116C11: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24058== by 0x111FB5: main (TestFileFinder.cpp:19) +==24058== +==24058== Open file descriptor 116: +==24058== +==24058== +==24058== Open file descriptor 113: +==24058== +==24058== +==24058== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFileFinder_valgrind.txt +==24058== +==24058== +==24058== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24058== +==24058== +==24058== +==24058== HEAP SUMMARY: +==24058== in use at exit: 617,870 bytes in 8,238 blocks +==24058== total heap usage: 48,468 allocs, 40,230 frees, 1,339,913,289 bytes allocated +==24058== +==24058== LEAK SUMMARY: +==24058== definitely lost: 0 bytes in 0 blocks +==24058== indirectly lost: 0 bytes in 0 blocks +==24058== possibly lost: 0 bytes in 0 blocks +==24058== still reachable: 24 bytes in 2 blocks +==24058== suppressed: 617,846 bytes in 8,236 blocks +==24058== Reachable blocks (those to which a pointer was found) are not shown. +==24058== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24058== +==24058== For lists of detected and suppressed errors, rerun with: -s +==24058== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestFineCoarseMeshPair_valgrind.txt b/log-files/2024-10-14_17-51-53/TestFineCoarseMeshPair_valgrind.txt new file mode 100644 index 000000000..3023cce4e --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestFineCoarseMeshPair_valgrind.txt @@ -0,0 +1,73 @@ +==25156== Memcheck, a memory error detector +==25156== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25156== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25156== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestFineCoarseMeshPair -malloc_debug -malloc_dump -memory_info +==25156== Parent PID: 23966 +==25156== +==25156== +==25156== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25156== Open file descriptor 12: +==25156== at 0x6FF907D: pipe (pipe.c:29) +==25156== by 0x104E607D: ??? +==25156== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25156== by 0x8A6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25156== by 0x8A06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25156== by 0x7348D38: PetscInitialize (pinit.c:924) +==25156== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25156== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25156== by 0x1229DA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25156== by 0x11DBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25156== by 0x120762: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25156== by 0x120602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25156== by 0x120C99: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25156== by 0x11C015: main (TestFineCoarseMeshPair.cpp:19) +==25156== +==25156== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25156== at 0x6FFDA1C: __open_nocancel (open64_nocancel.c:39) +==25156== by 0x6F81BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25156== by 0x6936822: ??? +==25156== by 0x693696F: ??? +==25156== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25156== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25156== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25156== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25156== by 0x8A6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25156== by 0x8A06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25156== by 0x7348D38: PetscInitialize (pinit.c:924) +==25156== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25156== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25156== by 0x1229DA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25156== by 0x11DBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25156== by 0x120762: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25156== by 0x120602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25156== by 0x120C99: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25156== by 0x11C015: main (TestFineCoarseMeshPair.cpp:19) +==25156== +==25156== Open file descriptor 116: +==25156== +==25156== +==25156== Open file descriptor 113: +==25156== +==25156== +==25156== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFineCoarseMeshPair_valgrind.txt +==25156== +==25156== +==25156== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25156== +==25156== +==25156== +==25156== HEAP SUMMARY: +==25156== in use at exit: 618,270 bytes in 8,238 blocks +==25156== total heap usage: 1,547,432 allocs, 1,539,194 frees, 1,479,793,359 bytes allocated +==25156== +==25156== LEAK SUMMARY: +==25156== definitely lost: 0 bytes in 0 blocks +==25156== indirectly lost: 0 bytes in 0 blocks +==25156== possibly lost: 0 bytes in 0 blocks +==25156== still reachable: 24 bytes in 2 blocks +==25156== suppressed: 618,246 bytes in 8,236 blocks +==25156== Reachable blocks (those to which a pointer was found) are not shown. +==25156== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25156== +==25156== For lists of detected and suppressed errors, rerun with: -s +==25156== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestFloatingPointDivisionByZeroPetsc_valgrind.txt b/log-files/2024-10-14_17-51-53/TestFloatingPointDivisionByZeroPetsc_valgrind.txt new file mode 100644 index 000000000..9906a14ea --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestFloatingPointDivisionByZeroPetsc_valgrind.txt @@ -0,0 +1,73 @@ +==24061== Memcheck, a memory error detector +==24061== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24061== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24061== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFloatingPointDivisionByZeroPetsc -malloc_debug -malloc_dump -memory_info +==24061== Parent PID: 23966 +==24061== +==24061== +==24061== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24061== Open file descriptor 12: +==24061== at 0x4CB207D: pipe (pipe.c:29) +==24061== by 0xAEAD07D: ??? +==24061== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24061== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24061== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24061== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24061== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24061== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24061== by 0x1123B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24061== by 0x10DFCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24061== by 0x110452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24061== by 0x1102F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24061== by 0x110989: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24061== by 0x10C3F5: main (TestFloatingPointDivisionByZeroPetsc.cpp:19) +==24061== +==24061== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24061== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24061== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24061== by 0x4934822: ??? +==24061== by 0x493496F: ??? +==24061== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24061== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24061== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24061== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24061== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24061== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24061== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24061== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24061== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24061== by 0x1123B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24061== by 0x10DFCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24061== by 0x110452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24061== by 0x1102F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24061== by 0x110989: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24061== by 0x10C3F5: main (TestFloatingPointDivisionByZeroPetsc.cpp:19) +==24061== +==24061== Open file descriptor 116: +==24061== +==24061== +==24061== Open file descriptor 113: +==24061== +==24061== +==24061== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFloatingPointDivisionByZeroPetsc_valgrind.txt +==24061== +==24061== +==24061== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24061== +==24061== +==24061== +==24061== HEAP SUMMARY: +==24061== in use at exit: 617,870 bytes in 8,238 blocks +==24061== total heap usage: 44,911 allocs, 36,673 frees, 1,338,160,107 bytes allocated +==24061== +==24061== LEAK SUMMARY: +==24061== definitely lost: 0 bytes in 0 blocks +==24061== indirectly lost: 0 bytes in 0 blocks +==24061== possibly lost: 0 bytes in 0 blocks +==24061== still reachable: 24 bytes in 2 blocks +==24061== suppressed: 617,846 bytes in 8,236 blocks +==24061== Reachable blocks (those to which a pointer was found) are not shown. +==24061== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24061== +==24061== For lists of detected and suppressed errors, rerun with: -s +==24061== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestFloatingPointDivisionByZero_valgrind.txt b/log-files/2024-10-14_17-51-53/TestFloatingPointDivisionByZero_valgrind.txt new file mode 100644 index 000000000..2f1d9e564 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestFloatingPointDivisionByZero_valgrind.txt @@ -0,0 +1,73 @@ +==24060== Memcheck, a memory error detector +==24060== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24060== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24060== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFloatingPointDivisionByZero -malloc_debug -malloc_dump -memory_info +==24060== Parent PID: 23966 +==24060== +==24060== +==24060== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24060== Open file descriptor 12: +==24060== at 0x616907D: pipe (pipe.c:29) +==24060== by 0xAEAD07D: ??? +==24060== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24060== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24060== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24060== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24060== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24060== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24060== by 0x11245F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24060== by 0x10E06D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24060== by 0x1104F2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24060== by 0x110392: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24060== by 0x110A29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24060== by 0x10C495: main (TestFloatingPointDivisionByZero.cpp:19) +==24060== +==24060== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24060== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24060== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24060== by 0x5CB2822: ??? +==24060== by 0x5CB296F: ??? +==24060== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24060== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24060== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24060== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24060== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24060== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24060== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24060== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24060== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24060== by 0x11245F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24060== by 0x10E06D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24060== by 0x1104F2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24060== by 0x110392: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24060== by 0x110A29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24060== by 0x10C495: main (TestFloatingPointDivisionByZero.cpp:19) +==24060== +==24060== Open file descriptor 116: +==24060== +==24060== +==24060== Open file descriptor 113: +==24060== +==24060== +==24060== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFloatingPointDivisionByZero_valgrind.txt +==24060== +==24060== +==24060== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24060== +==24060== +==24060== +==24060== HEAP SUMMARY: +==24060== in use at exit: 617,870 bytes in 8,238 blocks +==24060== total heap usage: 44,912 allocs, 36,674 frees, 1,338,159,863 bytes allocated +==24060== +==24060== LEAK SUMMARY: +==24060== definitely lost: 0 bytes in 0 blocks +==24060== indirectly lost: 0 bytes in 0 blocks +==24060== possibly lost: 0 bytes in 0 blocks +==24060== still reachable: 24 bytes in 2 blocks +==24060== suppressed: 617,846 bytes in 8,236 blocks +==24060== Reachable blocks (those to which a pointer was found) are not shown. +==24060== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24060== +==24060== For lists of detected and suppressed errors, rerun with: -s +==24060== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestFluidSource_valgrind.txt b/log-files/2024-10-14_17-51-53/TestFluidSource_valgrind.txt new file mode 100644 index 000000000..3e81eacf3 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestFluidSource_valgrind.txt @@ -0,0 +1,73 @@ +==24798== Memcheck, a memory error detector +==24798== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24798== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24798== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestFluidSource -malloc_debug -malloc_dump -memory_info +==24798== Parent PID: 23966 +==24798== +==24798== +==24798== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24798== Open file descriptor 12: +==24798== at 0x7DCC07D: pipe (pipe.c:29) +==24798== by 0x100D407D: ??? +==24798== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24798== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24798== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24798== by 0x6686D38: PetscInitialize (pinit.c:924) +==24798== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24798== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24798== by 0x11576F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24798== by 0x110FF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24798== by 0x113510: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24798== by 0x11340B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24798== by 0x113A1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24798== by 0x10F7F5: main (TestFluidSource.cpp:18) +==24798== +==24798== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24798== at 0x7DD0A1C: __open_nocancel (open64_nocancel.c:39) +==24798== by 0x7D54BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24798== by 0x7915822: ??? +==24798== by 0x791596F: ??? +==24798== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24798== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24798== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24798== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24798== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24798== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24798== by 0x6686D38: PetscInitialize (pinit.c:924) +==24798== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24798== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24798== by 0x11576F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24798== by 0x110FF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24798== by 0x113510: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24798== by 0x11340B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24798== by 0x113A1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24798== by 0x10F7F5: main (TestFluidSource.cpp:18) +==24798== +==24798== Open file descriptor 116: +==24798== +==24798== +==24798== Open file descriptor 113: +==24798== +==24798== +==24798== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFluidSource_valgrind.txt +==24798== +==24798== +==24798== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24798== +==24798== +==24798== +==24798== HEAP SUMMARY: +==24798== in use at exit: 618,238 bytes in 8,238 blocks +==24798== total heap usage: 47,306 allocs, 39,068 frees, 1,338,381,242 bytes allocated +==24798== +==24798== LEAK SUMMARY: +==24798== definitely lost: 0 bytes in 0 blocks +==24798== indirectly lost: 0 bytes in 0 blocks +==24798== possibly lost: 0 bytes in 0 blocks +==24798== still reachable: 24 bytes in 2 blocks +==24798== suppressed: 618,214 bytes in 8,236 blocks +==24798== Reachable blocks (those to which a pointer was found) are not shown. +==24798== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24798== +==24798== For lists of detected and suppressed errors, rerun with: -s +==24798== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestForces_valgrind.txt b/log-files/2024-10-14_17-51-53/TestForces_valgrind.txt new file mode 100644 index 000000000..a3cd95c11 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestForces_valgrind.txt @@ -0,0 +1,73 @@ +==25978== Memcheck, a memory error detector +==25978== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25978== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25978== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestForces -malloc_debug -malloc_dump -memory_info +==25978== Parent PID: 23966 +==25978== +==25978== +==25978== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25978== Open file descriptor 12: +==25978== at 0xF92C07D: pipe (pipe.c:29) +==25978== by 0x196BC07D: ??? +==25978== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25978== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25978== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25978== by 0x10218D38: PetscInitialize (pinit.c:924) +==25978== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25978== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25978== by 0x14FA72: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25978== by 0x147FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25978== by 0x14B1C0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25978== by 0x14B060: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25978== by 0x14B6F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25978== by 0x1463E5: main (TestForces.cpp:19) +==25978== +==25978== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25978== at 0xF930A1C: __open_nocancel (open64_nocancel.c:39) +==25978== by 0xF8B4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25978== by 0xF13E822: ??? +==25978== by 0xF13E96F: ??? +==25978== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25978== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25978== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25978== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25978== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25978== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25978== by 0x10218D38: PetscInitialize (pinit.c:924) +==25978== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25978== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25978== by 0x14FA72: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25978== by 0x147FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25978== by 0x14B1C0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25978== by 0x14B060: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25978== by 0x14B6F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25978== by 0x1463E5: main (TestForces.cpp:19) +==25978== +==25978== Open file descriptor 116: +==25978== +==25978== +==25978== Open file descriptor 113: +==25978== +==25978== +==25978== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestForces_valgrind.txt +==25978== +==25978== +==25978== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25978== +==25978== +==25978== +==25978== HEAP SUMMARY: +==25978== in use at exit: 618,366 bytes in 8,239 blocks +==25978== total heap usage: 100,216 allocs, 91,977 frees, 1,344,050,889 bytes allocated +==25978== +==25978== LEAK SUMMARY: +==25978== definitely lost: 0 bytes in 0 blocks +==25978== indirectly lost: 0 bytes in 0 blocks +==25978== possibly lost: 0 bytes in 0 blocks +==25978== still reachable: 56 bytes in 3 blocks +==25978== suppressed: 618,310 bytes in 8,236 blocks +==25978== Reachable blocks (those to which a pointer was found) are not shown. +==25978== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25978== +==25978== For lists of detected and suppressed errors, rerun with: -s +==25978== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestFourthOrderTensor_valgrind.txt b/log-files/2024-10-14_17-51-53/TestFourthOrderTensor_valgrind.txt new file mode 100644 index 000000000..909c76624 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestFourthOrderTensor_valgrind.txt @@ -0,0 +1,73 @@ +==24277== Memcheck, a memory error detector +==24277== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24277== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24277== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestFourthOrderTensor -malloc_debug -malloc_dump -memory_info +==24277== Parent PID: 23966 +==24277== +==24277== +==24277== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24277== Open file descriptor 12: +==24277== at 0x4CB407D: pipe (pipe.c:29) +==24277== by 0xAEAD07D: ??? +==24277== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24277== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24277== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24277== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24277== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24277== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24277== by 0x114306: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24277== by 0x10FD33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24277== by 0x1122B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24277== by 0x1121AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24277== by 0x1127BF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24277== by 0x10E535: main (TestFourthOrderTensor.cpp:18) +==24277== +==24277== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24277== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==24277== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24277== by 0x4934822: ??? +==24277== by 0x493496F: ??? +==24277== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24277== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24277== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24277== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24277== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24277== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24277== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24277== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24277== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24277== by 0x114306: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24277== by 0x10FD33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24277== by 0x1122B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24277== by 0x1121AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24277== by 0x1127BF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24277== by 0x10E535: main (TestFourthOrderTensor.cpp:18) +==24277== +==24277== Open file descriptor 116: +==24277== +==24277== +==24277== Open file descriptor 113: +==24277== +==24277== +==24277== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFourthOrderTensor_valgrind.txt +==24277== +==24277== +==24277== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24277== +==24277== +==24277== +==24277== HEAP SUMMARY: +==24277== in use at exit: 617,870 bytes in 8,238 blocks +==24277== total heap usage: 44,932 allocs, 36,694 frees, 1,338,167,030 bytes allocated +==24277== +==24277== LEAK SUMMARY: +==24277== definitely lost: 0 bytes in 0 blocks +==24277== indirectly lost: 0 bytes in 0 blocks +==24277== possibly lost: 0 bytes in 0 blocks +==24277== still reachable: 24 bytes in 2 blocks +==24277== suppressed: 617,846 bytes in 8,236 blocks +==24277== Reachable blocks (those to which a pointer was found) are not shown. +==24277== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24277== +==24277== For lists of detected and suppressed errors, rerun with: -s +==24277== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestGIModifiedModels_valgrind.txt b/log-files/2024-10-14_17-51-53/TestGIModifiedModels_valgrind.txt new file mode 100644 index 000000000..ffb6d9f6d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestGIModifiedModels_valgrind.txt @@ -0,0 +1,73 @@ +==41270== Memcheck, a memory error detector +==41270== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41270== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41270== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestGIModifiedModels -malloc_debug -malloc_dump -memory_info +==41270== Parent PID: 23966 +==41270== +==41270== +==41270== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41270== Open file descriptor 12: +==41270== at 0x886807D: pipe (pipe.c:29) +==41270== by 0x1433707D: ??? +==41270== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41270== by 0x9F61418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41270== by 0x9EFAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41270== by 0x8BF1D38: PetscInitialize (pinit.c:924) +==41270== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41270== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41270== by 0x12C2F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41270== by 0x126ECB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41270== by 0x129968: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41270== by 0x129808: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41270== by 0x129E9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41270== by 0x122165: main (TestGIModifiedModels.cpp:19) +==41270== +==41270== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41270== at 0x886CA1C: __open_nocancel (open64_nocancel.c:39) +==41270== by 0x87F0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41270== by 0x848C822: ??? +==41270== by 0x848C96F: ??? +==41270== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41270== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41270== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41270== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41270== by 0x9F61418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41270== by 0x9EFAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41270== by 0x8BF1D38: PetscInitialize (pinit.c:924) +==41270== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41270== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41270== by 0x12C2F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41270== by 0x126ECB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41270== by 0x129968: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41270== by 0x129808: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41270== by 0x129E9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41270== by 0x122165: main (TestGIModifiedModels.cpp:19) +==41270== +==41270== Open file descriptor 116: +==41270== +==41270== +==41270== Open file descriptor 113: +==41270== +==41270== +==41270== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGIModifiedModels_valgrind.txt +==41270== +==41270== +==41270== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41270== +==41270== +==41270== +==41270== HEAP SUMMARY: +==41270== in use at exit: 618,279 bytes in 8,234 blocks +==41270== total heap usage: 1,453,374 allocs, 1,445,140 frees, 1,614,518,088 bytes allocated +==41270== +==41270== LEAK SUMMARY: +==41270== definitely lost: 0 bytes in 0 blocks +==41270== indirectly lost: 0 bytes in 0 blocks +==41270== possibly lost: 0 bytes in 0 blocks +==41270== still reachable: 24 bytes in 2 blocks +==41270== suppressed: 618,255 bytes in 8,232 blocks +==41270== Reachable blocks (those to which a pointer was found) are not shown. +==41270== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41270== +==41270== For lists of detected and suppressed errors, rerun with: -s +==41270== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestGRL1IvpOdeSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestGRL1IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..86fd197bc --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestGRL1IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24942== Memcheck, a memory error detector +==24942== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24942== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24942== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestGRL1IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24942== Parent PID: 23966 +==24942== +==24942== +==24942== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24942== Open file descriptor 12: +==24942== at 0x503907D: pipe (pipe.c:29) +==24942== by 0xB1EE07D: ??? +==24942== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24942== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24942== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24942== by 0x5308D38: PetscInitialize (pinit.c:924) +==24942== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24942== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24942== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24942== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24942== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24942== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24942== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24942== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) +==24942== +==24942== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24942== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24942== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24942== by 0x4B76822: ??? +==24942== by 0x4B7696F: ??? +==24942== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24942== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24942== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24942== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24942== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24942== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24942== by 0x5308D38: PetscInitialize (pinit.c:924) +==24942== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24942== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24942== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24942== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24942== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24942== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24942== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24942== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) +==24942== +==24942== Open file descriptor 116: +==24942== +==24942== +==24942== Open file descriptor 113: +==24942== +==24942== +==24942== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGRL1IvpOdeSolver_valgrind.txt +==24942== +==24942== +==24942== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24942== +==24942== +==24942== +==24942== HEAP SUMMARY: +==24942== in use at exit: 617,934 bytes in 8,238 blocks +==24942== total heap usage: 50,997 allocs, 42,759 frees, 1,338,665,285 bytes allocated +==24942== +==24942== LEAK SUMMARY: +==24942== definitely lost: 0 bytes in 0 blocks +==24942== indirectly lost: 0 bytes in 0 blocks +==24942== possibly lost: 0 bytes in 0 blocks +==24942== still reachable: 24 bytes in 2 blocks +==24942== suppressed: 617,910 bytes in 8,236 blocks +==24942== Reachable blocks (those to which a pointer was found) are not shown. +==24942== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24942== +==24942== For lists of detected and suppressed errors, rerun with: -s +==24942== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestGRL2IvpOdeSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestGRL2IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..98f9dfaf4 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestGRL2IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24943== Memcheck, a memory error detector +==24943== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24943== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24943== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestGRL2IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24943== Parent PID: 23966 +==24943== +==24943== +==24943== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24943== Open file descriptor 12: +==24943== at 0x503907D: pipe (pipe.c:29) +==24943== by 0xB1EE07D: ??? +==24943== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24943== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24943== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24943== by 0x5308D38: PetscInitialize (pinit.c:924) +==24943== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24943== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24943== by 0x127082: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24943== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24943== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24943== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24943== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24943== by 0x11EEA5: main (TestGRL2IvpOdeSolver.cpp:19) +==24943== +==24943== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24943== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24943== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24943== by 0x4B76822: ??? +==24943== by 0x4B7696F: ??? +==24943== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24943== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24943== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24943== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24943== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24943== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24943== by 0x5308D38: PetscInitialize (pinit.c:924) +==24943== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24943== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24943== by 0x127082: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24943== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24943== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24943== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24943== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24943== by 0x11EEA5: main (TestGRL2IvpOdeSolver.cpp:19) +==24943== +==24943== Open file descriptor 116: +==24943== +==24943== +==24943== Open file descriptor 113: +==24943== +==24943== +==24943== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGRL2IvpOdeSolver_valgrind.txt +==24943== +==24943== +==24943== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24943== +==24943== +==24943== +==24943== HEAP SUMMARY: +==24943== in use at exit: 617,934 bytes in 8,238 blocks +==24943== total heap usage: 51,373 allocs, 43,135 frees, 1,338,714,058 bytes allocated +==24943== +==24943== LEAK SUMMARY: +==24943== definitely lost: 0 bytes in 0 blocks +==24943== indirectly lost: 0 bytes in 0 blocks +==24943== possibly lost: 0 bytes in 0 blocks +==24943== still reachable: 24 bytes in 2 blocks +==24943== suppressed: 617,910 bytes in 8,236 blocks +==24943== Reachable blocks (those to which a pointer was found) are not shown. +==24943== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24943== +==24943== For lists of detected and suppressed errors, rerun with: -s +==24943== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestGaussianQuadratureRule_valgrind.txt b/log-files/2024-10-14_17-51-53/TestGaussianQuadratureRule_valgrind.txt new file mode 100644 index 000000000..fc96af657 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestGaussianQuadratureRule_valgrind.txt @@ -0,0 +1,73 @@ +==25163== Memcheck, a memory error detector +==25163== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25163== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25163== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestGaussianQuadratureRule -malloc_debug -malloc_dump -memory_info +==25163== Parent PID: 23966 +==25163== +==25163== +==25163== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25163== Open file descriptor 12: +==25163== at 0x6D9B07D: pipe (pipe.c:29) +==25163== by 0x104E607D: ??? +==25163== by 0xC3264CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25163== by 0x880F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25163== by 0x87A8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25163== by 0x70EAD38: PetscInitialize (pinit.c:924) +==25163== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25163== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25163== by 0x11A084: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25163== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25163== by 0x1180E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25163== by 0x117F82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25163== by 0x118619: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25163== by 0x113AB5: main (TestGaussianQuadratureRule.cpp:19) +==25163== +==25163== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25163== at 0x6D9FA1C: __open_nocancel (open64_nocancel.c:39) +==25163== by 0x6D23BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25163== by 0x6936822: ??? +==25163== by 0x693696F: ??? +==25163== by 0xC3CD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25163== by 0xC3CD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25163== by 0xC383922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25163== by 0xC3262DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25163== by 0x880F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25163== by 0x87A8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25163== by 0x70EAD38: PetscInitialize (pinit.c:924) +==25163== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25163== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25163== by 0x11A084: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25163== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25163== by 0x1180E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25163== by 0x117F82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25163== by 0x118619: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25163== by 0x113AB5: main (TestGaussianQuadratureRule.cpp:19) +==25163== +==25163== Open file descriptor 116: +==25163== +==25163== +==25163== Open file descriptor 113: +==25163== +==25163== +==25163== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGaussianQuadratureRule_valgrind.txt +==25163== +==25163== +==25163== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25163== +==25163== +==25163== +==25163== HEAP SUMMARY: +==25163== in use at exit: 618,270 bytes in 8,238 blocks +==25163== total heap usage: 47,634 allocs, 39,396 frees, 1,338,402,881 bytes allocated +==25163== +==25163== LEAK SUMMARY: +==25163== definitely lost: 0 bytes in 0 blocks +==25163== indirectly lost: 0 bytes in 0 blocks +==25163== possibly lost: 0 bytes in 0 blocks +==25163== still reachable: 24 bytes in 2 blocks +==25163== suppressed: 618,246 bytes in 8,236 blocks +==25163== Reachable blocks (those to which a pointer was found) are not shown. +==25163== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25163== +==25163== For lists of detected and suppressed errors, rerun with: -s +==25163== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestGeneralizedRushLarsen_valgrind.txt b/log-files/2024-10-14_17-51-53/TestGeneralizedRushLarsen_valgrind.txt new file mode 100644 index 000000000..7e2b3cc36 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestGeneralizedRushLarsen_valgrind.txt @@ -0,0 +1,73 @@ +==41636== Memcheck, a memory error detector +==41636== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41636== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41636== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestGeneralizedRushLarsen -malloc_debug -malloc_dump -memory_info +==41636== Parent PID: 23966 +==41636== +==41636== +==41636== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41636== Open file descriptor 12: +==41636== at 0x87B107D: pipe (pipe.c:29) +==41636== by 0x1433707D: ??? +==41636== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41636== by 0x9EAC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41636== by 0x9E45D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41636== by 0x8B3CD38: PetscInitialize (pinit.c:924) +==41636== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41636== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41636== by 0x11C6A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41636== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41636== by 0x11A2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41636== by 0x11A14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41636== by 0x11A7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41636== by 0x115CD5: main (TestGeneralizedRushLarsen.cpp:19) +==41636== +==41636== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41636== at 0x87B5A1C: __open_nocancel (open64_nocancel.c:39) +==41636== by 0x8739BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41636== by 0x8419822: ??? +==41636== by 0x841996F: ??? +==41636== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41636== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41636== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41636== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41636== by 0x9EAC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41636== by 0x9E45D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41636== by 0x8B3CD38: PetscInitialize (pinit.c:924) +==41636== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41636== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41636== by 0x11C6A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41636== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41636== by 0x11A2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41636== by 0x11A14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41636== by 0x11A7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41636== by 0x115CD5: main (TestGeneralizedRushLarsen.cpp:19) +==41636== +==41636== Open file descriptor 116: +==41636== +==41636== +==41636== Open file descriptor 113: +==41636== +==41636== +==41636== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGeneralizedRushLarsen_valgrind.txt +==41636== +==41636== +==41636== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41636== +==41636== +==41636== +==41636== HEAP SUMMARY: +==41636== in use at exit: 621,884 bytes in 8,242 blocks +==41636== total heap usage: 3,054,222 allocs, 3,045,980 frees, 1,612,720,518 bytes allocated +==41636== +==41636== LEAK SUMMARY: +==41636== definitely lost: 0 bytes in 0 blocks +==41636== indirectly lost: 0 bytes in 0 blocks +==41636== possibly lost: 0 bytes in 0 blocks +==41636== still reachable: 3,629 bytes in 10 blocks +==41636== suppressed: 618,255 bytes in 8,232 blocks +==41636== Reachable blocks (those to which a pointer was found) are not shown. +==41636== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41636== +==41636== For lists of detected and suppressed errors, rerun with: -s +==41636== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestGenericEventHandler_valgrind.txt b/log-files/2024-10-14_17-51-53/TestGenericEventHandler_valgrind.txt new file mode 100644 index 000000000..7e772abd6 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestGenericEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24087== Memcheck, a memory error detector +==24087== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24087== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24087== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestGenericEventHandler -malloc_debug -malloc_dump -memory_info +==24087== Parent PID: 23966 +==24087== +==24087== +==24087== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24087== Open file descriptor 12: +==24087== at 0x4DEB07D: pipe (pipe.c:29) +==24087== by 0xAEAB07D: ??? +==24087== by 0x643A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24087== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24087== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24087== by 0x5036D38: PetscInitialize (pinit.c:924) +==24087== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24087== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24087== by 0x1166EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24087== by 0x11164D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24087== by 0x11478C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24087== by 0x11462C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24087== by 0x114CC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24087== by 0x10FA75: main (TestGenericEventHandler.cpp:19) +==24087== +==24087== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24087== at 0x4DEFA1C: __open_nocancel (open64_nocancel.c:39) +==24087== by 0x4D73BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24087== by 0x4934822: ??? +==24087== by 0x493496F: ??? +==24087== by 0x64E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24087== by 0x64E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24087== by 0x6497922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24087== by 0x643A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24087== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24087== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24087== by 0x5036D38: PetscInitialize (pinit.c:924) +==24087== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24087== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24087== by 0x1166EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24087== by 0x11164D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24087== by 0x11478C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24087== by 0x11462C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24087== by 0x114CC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24087== by 0x10FA75: main (TestGenericEventHandler.cpp:19) +==24087== +==24087== Open file descriptor 116: +==24087== +==24087== +==24087== Open file descriptor 113: +==24087== +==24087== +==24087== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGenericEventHandler_valgrind.txt +==24087== +==24087== +==24087== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24087== +==24087== +==24087== +==24087== HEAP SUMMARY: +==24087== in use at exit: 617,870 bytes in 8,238 blocks +==24087== total heap usage: 44,989 allocs, 36,751 frees, 1,338,169,309 bytes allocated +==24087== +==24087== LEAK SUMMARY: +==24087== definitely lost: 0 bytes in 0 blocks +==24087== indirectly lost: 0 bytes in 0 blocks +==24087== possibly lost: 0 bytes in 0 blocks +==24087== still reachable: 24 bytes in 2 blocks +==24087== suppressed: 617,846 bytes in 8,236 blocks +==24087== Reachable blocks (those to which a pointer was found) are not shown. +==24087== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24087== +==24087== For lists of detected and suppressed errors, rerun with: -s +==24087== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestGmshMeshReader_valgrind.txt b/log-files/2024-10-14_17-51-53/TestGmshMeshReader_valgrind.txt new file mode 100644 index 000000000..2acf01178 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestGmshMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24594== Memcheck, a memory error detector +==24594== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24594== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24594== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestGmshMeshReader -malloc_debug -malloc_dump -memory_info +==24594== Parent PID: 23966 +==24594== +==24594== +==24594== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24594== Open file descriptor 12: +==24594== at 0x6D4307D: pipe (pipe.c:29) +==24594== by 0x100D407D: ??? +==24594== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24594== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24594== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24594== by 0x701FD38: PetscInitialize (pinit.c:924) +==24594== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24594== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24594== by 0x1235DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24594== by 0x11EA0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24594== by 0x12152A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24594== by 0x1213CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24594== by 0x121A61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24594== by 0x11CE35: main (TestGmshMeshReader.cpp:19) +==24594== +==24594== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24594== at 0x6D47A1C: __open_nocancel (open64_nocancel.c:39) +==24594== by 0x6CCBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24594== by 0x6597822: ??? +==24594== by 0x659796F: ??? +==24594== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24594== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24594== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24594== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24594== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24594== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24594== by 0x701FD38: PetscInitialize (pinit.c:924) +==24594== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24594== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24594== by 0x1235DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24594== by 0x11EA0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24594== by 0x12152A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24594== by 0x1213CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24594== by 0x121A61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24594== by 0x11CE35: main (TestGmshMeshReader.cpp:19) +==24594== +==24594== Open file descriptor 116: +==24594== +==24594== +==24594== Open file descriptor 113: +==24594== +==24594== +==24594== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGmshMeshReader_valgrind.txt +==24594== +==24594== +==24594== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24594== +==24594== +==24594== +==24594== HEAP SUMMARY: +==24594== in use at exit: 618,238 bytes in 8,238 blocks +==24594== total heap usage: 50,714 allocs, 42,476 frees, 1,339,358,003 bytes allocated +==24594== +==24594== LEAK SUMMARY: +==24594== definitely lost: 0 bytes in 0 blocks +==24594== indirectly lost: 0 bytes in 0 blocks +==24594== possibly lost: 0 bytes in 0 blocks +==24594== still reachable: 24 bytes in 2 blocks +==24594== suppressed: 618,214 bytes in 8,236 blocks +==24594== Reachable blocks (those to which a pointer was found) are not shown. +==24594== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24594== +==24594== For lists of detected and suppressed errors, rerun with: -s +==24594== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-10-14_17-51-53/TestGoldbeter1991OdeSystem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestGoldbeter1991OdeSystem_valgrind.txt new file mode 100644 index 000000000..74154e442 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestGoldbeter1991OdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25850== Memcheck, a memory error detector +==25850== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25850== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25850== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestGoldbeter1991OdeSystem -malloc_debug -malloc_dump -memory_info +==25850== Parent PID: 23966 +==25850== +==25850== +==25850== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25850== Open file descriptor 12: +==25850== at 0xEF9407D: pipe (pipe.c:29) +==25850== by 0x196BD07D: ??? +==25850== by 0x13C594CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25850== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25850== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25850== by 0xD871D38: PetscInitialize (pinit.c:924) +==25850== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25850== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25850== by 0x124157: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25850== by 0x11F6A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25850== by 0x121BF4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25850== by 0x121AF0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25850== by 0x122103: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25850== by 0x11DEA5: main (TestGoldbeter1991OdeSystem.cpp:18) +==25850== +==25850== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25850== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25850== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25850== by 0xD71D822: ??? +==25850== by 0xD71D96F: ??? +==25850== by 0x13CFE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25850== by 0x13CFE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25850== by 0x13CB4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25850== by 0x13C592DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25850== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25850== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25850== by 0xD871D38: PetscInitialize (pinit.c:924) +==25850== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25850== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25850== by 0x124157: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25850== by 0x11F6A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25850== by 0x121BF4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25850== by 0x121AF0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25850== by 0x122103: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25850== by 0x11DEA5: main (TestGoldbeter1991OdeSystem.cpp:18) +==25850== +==25850== Open file descriptor 116: +==25850== +==25850== +==25850== Open file descriptor 113: +==25850== +==25850== +==25850== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGoldbeter1991OdeSystem_valgrind.txt +==25850== +==25850== +==25850== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25850== +==25850== +==25850== +==25850== HEAP SUMMARY: +==25850== in use at exit: 618,334 bytes in 8,238 blocks +==25850== total heap usage: 63,221 allocs, 54,983 frees, 1,339,961,216 bytes allocated +==25850== +==25850== LEAK SUMMARY: +==25850== definitely lost: 0 bytes in 0 blocks +==25850== indirectly lost: 0 bytes in 0 blocks +==25850== possibly lost: 0 bytes in 0 blocks +==25850== still reachable: 24 bytes in 2 blocks +==25850== suppressed: 618,310 bytes in 8,236 blocks +==25850== Reachable blocks (those to which a pointer was found) are not shown. +==25850== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25850== +==25850== For lists of detected and suppressed errors, rerun with: -s +==25850== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestHdf5Converters_valgrind.txt b/log-files/2024-10-14_17-51-53/TestHdf5Converters_valgrind.txt new file mode 100644 index 000000000..cb8c4f64f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestHdf5Converters_valgrind.txt @@ -0,0 +1,73 @@ +==25177== Memcheck, a memory error detector +==25177== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25177== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25177== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestHdf5Converters -malloc_debug -malloc_dump -memory_info +==25177== Parent PID: 23966 +==25177== +==25177== +==25177== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25177== Open file descriptor 12: +==25177== at 0x734D07D: pipe (pipe.c:29) +==25177== by 0x104E607D: ??? +==25177== by 0xC6124CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25177== by 0x8DC1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25177== by 0x8D5AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25177== by 0x769CD38: PetscInitialize (pinit.c:924) +==25177== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25177== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25177== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25177== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25177== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25177== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25177== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25177== by 0x11B235: main (TestHdf5Converters.cpp:18) +==25177== +==25177== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25177== at 0x7351A1C: __open_nocancel (open64_nocancel.c:39) +==25177== by 0x72D5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25177== by 0x6936822: ??? +==25177== by 0x693696F: ??? +==25177== by 0xC6B76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25177== by 0xC6B7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25177== by 0xC66D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25177== by 0xC6122DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25177== by 0x8DC1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25177== by 0x8D5AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25177== by 0x769CD38: PetscInitialize (pinit.c:924) +==25177== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25177== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25177== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25177== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25177== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25177== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25177== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25177== by 0x11B235: main (TestHdf5Converters.cpp:18) +==25177== +==25177== Open file descriptor 116: +==25177== +==25177== +==25177== Open file descriptor 113: +==25177== +==25177== +==25177== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5Converters_valgrind.txt +==25177== +==25177== +==25177== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25177== +==25177== +==25177== +==25177== HEAP SUMMARY: +==25177== in use at exit: 618,270 bytes in 8,238 blocks +==25177== total heap usage: 206,017 allocs, 197,779 frees, 1,394,471,911 bytes allocated +==25177== +==25177== LEAK SUMMARY: +==25177== definitely lost: 0 bytes in 0 blocks +==25177== indirectly lost: 0 bytes in 0 blocks +==25177== possibly lost: 0 bytes in 0 blocks +==25177== still reachable: 24 bytes in 2 blocks +==25177== suppressed: 618,246 bytes in 8,236 blocks +==25177== Reachable blocks (those to which a pointer was found) are not shown. +==25177== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25177== +==25177== For lists of detected and suppressed errors, rerun with: -s +==25177== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestHdf5DataReader_valgrind.txt b/log-files/2024-10-14_17-51-53/TestHdf5DataReader_valgrind.txt new file mode 100644 index 000000000..3e2c69ecd --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestHdf5DataReader_valgrind.txt @@ -0,0 +1,73 @@ +==24225== Memcheck, a memory error detector +==24225== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24225== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24225== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info +==24225== Parent PID: 23966 +==24225== +==24225== +==24225== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24225== Open file descriptor 12: +==24225== at 0x645A07D: pipe (pipe.c:29) +==24225== by 0xAF2007D: ??? +==24225== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24225== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24225== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24225== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24225== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24225== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24225== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24225== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24225== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24225== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24225== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24225== by 0x1151B5: main (TestHdf5DataReader.cpp:19) +==24225== +==24225== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24225== at 0x645EA1C: __open_nocancel (open64_nocancel.c:39) +==24225== by 0x63E2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24225== by 0x5D25822: ??? +==24225== by 0x5D2596F: ??? +==24225== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24225== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24225== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24225== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24225== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24225== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24225== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24225== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24225== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24225== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24225== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24225== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24225== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24225== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24225== by 0x1151B5: main (TestHdf5DataReader.cpp:19) +==24225== +==24225== Open file descriptor 116: +==24225== +==24225== +==24225== Open file descriptor 113: +==24225== +==24225== +==24225== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt +==24225== +==24225== +==24225== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24225== +==24225== +==24225== +==24225== HEAP SUMMARY: +==24225== in use at exit: 618,366 bytes in 8,248 blocks +==24225== total heap usage: 58,547 allocs, 50,299 frees, 1,348,774,605 bytes allocated +==24225== +==24225== LEAK SUMMARY: +==24225== definitely lost: 0 bytes in 0 blocks +==24225== indirectly lost: 0 bytes in 0 blocks +==24225== possibly lost: 0 bytes in 0 blocks +==24225== still reachable: 24 bytes in 2 blocks +==24225== suppressed: 618,342 bytes in 8,246 blocks +==24225== Reachable blocks (those to which a pointer was found) are not shown. +==24225== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24225== +==24225== For lists of detected and suppressed errors, rerun with: -s +==24225== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35) diff --git a/log-files/2024-10-14_17-51-53/TestHdf5DataWriter_valgrind.txt b/log-files/2024-10-14_17-51-53/TestHdf5DataWriter_valgrind.txt new file mode 100644 index 000000000..f4201881a --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestHdf5DataWriter_valgrind.txt @@ -0,0 +1,74 @@ +==24243== Memcheck, a memory error detector +==24243== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24243== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24243== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info +==24243== Parent PID: 23966 +==24243== +==24243== Warning: invalid file descriptor -1 in syscall close() +==24243== +==24243== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24243== Open file descriptor 12: +==24243== at 0x659107D: pipe (pipe.c:29) +==24243== by 0xAF2007D: ??? +==24243== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24243== by 0x61E0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24243== by 0x6179D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24243== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24243== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24243== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24243== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24243== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24243== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24243== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24243== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24243== by 0x115255: main (TestHdf5DataWriter.cpp:19) +==24243== +==24243== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24243== at 0x6595A1C: __open_nocancel (open64_nocancel.c:39) +==24243== by 0x6519BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24243== by 0x5D25822: ??? +==24243== by 0x5D2596F: ??? +==24243== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24243== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24243== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24243== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24243== by 0x61E0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24243== by 0x6179D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24243== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24243== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24243== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24243== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24243== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24243== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24243== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24243== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24243== by 0x115255: main (TestHdf5DataWriter.cpp:19) +==24243== +==24243== Open file descriptor 116: +==24243== +==24243== +==24243== Open file descriptor 113: +==24243== +==24243== +==24243== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt +==24243== +==24243== +==24243== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24243== +==24243== +==24243== +==24243== HEAP SUMMARY: +==24243== in use at exit: 618,366 bytes in 8,248 blocks +==24243== total heap usage: 114,801 allocs, 106,553 frees, 1,412,664,981 bytes allocated +==24243== +==24243== LEAK SUMMARY: +==24243== definitely lost: 0 bytes in 0 blocks +==24243== indirectly lost: 0 bytes in 0 blocks +==24243== possibly lost: 0 bytes in 0 blocks +==24243== still reachable: 24 bytes in 2 blocks +==24243== suppressed: 618,342 bytes in 8,246 blocks +==24243== Reachable blocks (those to which a pointer was found) are not shown. +==24243== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24243== +==24243== For lists of detected and suppressed errors, rerun with: -s +==24243== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35) diff --git a/log-files/2024-10-14_17-51-53/TestHdf5ToVisualizerConverters_valgrind.txt b/log-files/2024-10-14_17-51-53/TestHdf5ToVisualizerConverters_valgrind.txt new file mode 100644 index 000000000..502740f23 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestHdf5ToVisualizerConverters_valgrind.txt @@ -0,0 +1,73 @@ +==43404== Memcheck, a memory error detector +==43404== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43404== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43404== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHdf5ToVisualizerConverters -malloc_debug -malloc_dump -memory_info +==43404== Parent PID: 23966 +==43404== +==43404== +==43404== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43404== Open file descriptor 12: +==43404== at 0xA8B607D: pipe (pipe.c:29) +==43404== by 0x1433707D: ??? +==43404== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43404== by 0xBFAF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43404== by 0xBF48D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43404== by 0xAC3FD38: PetscInitialize (pinit.c:924) +==43404== by 0xA19D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43404== by 0xA19D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43404== by 0x124324: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43404== by 0x11DB0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43404== by 0x120564: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43404== by 0x120404: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43404== by 0x120A9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43404== by 0x11BF35: main (TestHdf5ToVisualizerConverters.cpp:19) +==43404== +==43404== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43404== at 0xA8BAA1C: __open_nocancel (open64_nocancel.c:39) +==43404== by 0xA83EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43404== by 0xA1D7822: ??? +==43404== by 0xA1D796F: ??? +==43404== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43404== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43404== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43404== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43404== by 0xBFAF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43404== by 0xBF48D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43404== by 0xAC3FD38: PetscInitialize (pinit.c:924) +==43404== by 0xA19D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43404== by 0xA19D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43404== by 0x124324: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43404== by 0x11DB0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43404== by 0x120564: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43404== by 0x120404: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43404== by 0x120A9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43404== by 0x11BF35: main (TestHdf5ToVisualizerConverters.cpp:19) +==43404== +==43404== Open file descriptor 116: +==43404== +==43404== +==43404== Open file descriptor 113: +==43404== +==43404== +==43404== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5ToVisualizerConverters_valgrind.txt +==43404== +==43404== +==43404== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43404== +==43404== +==43404== +==43404== HEAP SUMMARY: +==43404== in use at exit: 618,350 bytes in 8,238 blocks +==43404== total heap usage: 120,270 allocs, 112,032 frees, 1,366,197,254 bytes allocated +==43404== +==43404== LEAK SUMMARY: +==43404== definitely lost: 0 bytes in 0 blocks +==43404== indirectly lost: 0 bytes in 0 blocks +==43404== possibly lost: 0 bytes in 0 blocks +==43404== still reachable: 24 bytes in 2 blocks +==43404== suppressed: 618,326 bytes in 8,236 blocks +==43404== Reachable blocks (those to which a pointer was found) are not shown. +==43404== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43404== +==43404== For lists of detected and suppressed errors, rerun with: -s +==43404== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestHeartConfig_valgrind.txt b/log-files/2024-10-14_17-51-53/TestHeartConfig_valgrind.txt new file mode 100644 index 000000000..139c0592d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestHeartConfig_valgrind.txt @@ -0,0 +1,73 @@ +==43681== Memcheck, a memory error detector +==43681== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43681== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43681== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartConfig -malloc_debug -malloc_dump -memory_info +==43681== Parent PID: 23966 +==43681== +==43681== +==43681== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43681== Open file descriptor 12: +==43681== at 0xBA9F07D: pipe (pipe.c:29) +==43681== by 0x1433707D: ??? +==43681== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43681== by 0xB38D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43681== by 0xB326D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43681== by 0xA01DD38: PetscInitialize (pinit.c:924) +==43681== by 0x9E8F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43681== by 0x9E8F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43681== by 0x17E1E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43681== by 0x175CFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43681== by 0x179100: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43681== by 0x178FA0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43681== by 0x179637: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43681== by 0x174125: main (TestHeartConfig.cpp:19) +==43681== +==43681== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43681== at 0xBAA3A1C: __open_nocancel (open64_nocancel.c:39) +==43681== by 0xBA27BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43681== by 0x9EC9822: ??? +==43681== by 0x9EC996F: ??? +==43681== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43681== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43681== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43681== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43681== by 0xB38D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43681== by 0xB326D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43681== by 0xA01DD38: PetscInitialize (pinit.c:924) +==43681== by 0x9E8F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43681== by 0x9E8F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43681== by 0x17E1E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43681== by 0x175CFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43681== by 0x179100: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43681== by 0x178FA0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43681== by 0x179637: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43681== by 0x174125: main (TestHeartConfig.cpp:19) +==43681== +==43681== Open file descriptor 116: +==43681== +==43681== +==43681== Open file descriptor 113: +==43681== +==43681== +==43681== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartConfig_valgrind.txt +==43681== +==43681== +==43681== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43681== +==43681== +==43681== +==43681== HEAP SUMMARY: +==43681== in use at exit: 618,350 bytes in 8,238 blocks +==43681== total heap usage: 2,320,355 allocs, 2,312,117 frees, 2,008,576,151 bytes allocated +==43681== +==43681== LEAK SUMMARY: +==43681== definitely lost: 0 bytes in 0 blocks +==43681== indirectly lost: 0 bytes in 0 blocks +==43681== possibly lost: 0 bytes in 0 blocks +==43681== still reachable: 24 bytes in 2 blocks +==43681== suppressed: 618,326 bytes in 8,236 blocks +==43681== Reachable blocks (those to which a pointer was found) are not shown. +==43681== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43681== +==43681== For lists of detected and suppressed errors, rerun with: -s +==43681== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestHeartEventHandler_valgrind.txt b/log-files/2024-10-14_17-51-53/TestHeartEventHandler_valgrind.txt new file mode 100644 index 000000000..66b1fa562 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestHeartEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24088== Memcheck, a memory error detector +==24088== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24088== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24088== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestHeartEventHandler -malloc_debug -malloc_dump -memory_info +==24088== Parent PID: 23966 +==24088== +==24088== +==24088== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24088== Open file descriptor 12: +==24088== at 0x4DEB07D: pipe (pipe.c:29) +==24088== by 0xAEAB07D: ??? +==24088== by 0x643A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24088== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24088== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24088== by 0x5036D38: PetscInitialize (pinit.c:924) +==24088== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24088== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24088== by 0x115454: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24088== by 0x11064D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24088== by 0x1134F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24088== by 0x113396: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24088== by 0x113A2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24088== by 0x10EA75: main (TestHeartEventHandler.cpp:19) +==24088== +==24088== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24088== at 0x4DEFA1C: __open_nocancel (open64_nocancel.c:39) +==24088== by 0x4D73BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24088== by 0x4934822: ??? +==24088== by 0x493496F: ??? +==24088== by 0x64E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24088== by 0x64E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24088== by 0x6497922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24088== by 0x643A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24088== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24088== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24088== by 0x5036D38: PetscInitialize (pinit.c:924) +==24088== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24088== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24088== by 0x115454: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24088== by 0x11064D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24088== by 0x1134F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24088== by 0x113396: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24088== by 0x113A2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24088== by 0x10EA75: main (TestHeartEventHandler.cpp:19) +==24088== +==24088== Open file descriptor 116: +==24088== +==24088== +==24088== Open file descriptor 113: +==24088== +==24088== +==24088== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartEventHandler_valgrind.txt +==24088== +==24088== +==24088== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24088== +==24088== +==24088== +==24088== HEAP SUMMARY: +==24088== in use at exit: 617,870 bytes in 8,238 blocks +==24088== total heap usage: 44,954 allocs, 36,716 frees, 1,338,164,351 bytes allocated +==24088== +==24088== LEAK SUMMARY: +==24088== definitely lost: 0 bytes in 0 blocks +==24088== indirectly lost: 0 bytes in 0 blocks +==24088== possibly lost: 0 bytes in 0 blocks +==24088== still reachable: 24 bytes in 2 blocks +==24088== suppressed: 617,846 bytes in 8,236 blocks +==24088== Reachable blocks (those to which a pointer was found) are not shown. +==24088== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24088== +==24088== For lists of detected and suppressed errors, rerun with: -s +==24088== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestHeartFileFinder_valgrind.txt b/log-files/2024-10-14_17-51-53/TestHeartFileFinder_valgrind.txt new file mode 100644 index 000000000..27a22608b --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestHeartFileFinder_valgrind.txt @@ -0,0 +1,73 @@ +==43705== Memcheck, a memory error detector +==43705== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43705== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43705== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartFileFinder -malloc_debug -malloc_dump -memory_info +==43705== Parent PID: 23966 +==43705== +==43705== +==43705== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43705== Open file descriptor 12: +==43705== at 0x856F07D: pipe (pipe.c:29) +==43705== by 0x1433707D: ??? +==43705== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43705== by 0x9C6A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43705== by 0x9C03D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43705== by 0x88FAD38: PetscInitialize (pinit.c:924) +==43705== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43705== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43705== by 0x11F18E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43705== by 0x11A2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43705== by 0x11C9B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43705== by 0x11C8AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43705== by 0x11CEBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43705== by 0x118AB5: main (TestHeartFileFinder.cpp:18) +==43705== +==43705== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43705== at 0x8573A1C: __open_nocancel (open64_nocancel.c:39) +==43705== by 0x84F7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43705== by 0x81D5822: ??? +==43705== by 0x81D596F: ??? +==43705== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43705== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43705== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43705== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43705== by 0x9C6A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43705== by 0x9C03D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43705== by 0x88FAD38: PetscInitialize (pinit.c:924) +==43705== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43705== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43705== by 0x11F18E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43705== by 0x11A2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43705== by 0x11C9B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43705== by 0x11C8AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43705== by 0x11CEBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43705== by 0x118AB5: main (TestHeartFileFinder.cpp:18) +==43705== +==43705== Open file descriptor 116: +==43705== +==43705== +==43705== Open file descriptor 113: +==43705== +==43705== +==43705== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartFileFinder_valgrind.txt +==43705== +==43705== +==43705== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43705== +==43705== +==43705== +==43705== HEAP SUMMARY: +==43705== in use at exit: 618,350 bytes in 8,238 blocks +==43705== total heap usage: 48,972 allocs, 40,734 frees, 1,338,596,845 bytes allocated +==43705== +==43705== LEAK SUMMARY: +==43705== definitely lost: 0 bytes in 0 blocks +==43705== indirectly lost: 0 bytes in 0 blocks +==43705== possibly lost: 0 bytes in 0 blocks +==43705== still reachable: 24 bytes in 2 blocks +==43705== suppressed: 618,326 bytes in 8,236 blocks +==43705== Reachable blocks (those to which a pointer was found) are not shown. +==43705== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43705== +==43705== For lists of detected and suppressed errors, rerun with: -s +==43705== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestHeartGeometryInformation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestHeartGeometryInformation_valgrind.txt new file mode 100644 index 000000000..bb9d6de90 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestHeartGeometryInformation_valgrind.txt @@ -0,0 +1,73 @@ +==43713== Memcheck, a memory error detector +==43713== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43713== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43713== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartGeometryInformation -malloc_debug -malloc_dump -memory_info +==43713== Parent PID: 23966 +==43713== +==43713== +==43713== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43713== Open file descriptor 12: +==43713== at 0xA51707D: pipe (pipe.c:29) +==43713== by 0x1433707D: ??? +==43713== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43713== by 0xBC12418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43713== by 0xBBABD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43713== by 0xA8A2D38: PetscInitialize (pinit.c:924) +==43713== by 0x9E001D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43713== by 0x9E00227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43713== by 0x11C60C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43713== by 0x117A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43713== by 0x11A4EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43713== by 0x11A38E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43713== by 0x11AA25: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43713== by 0x115E75: main (TestHeartGeometryInformation.cpp:19) +==43713== +==43713== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43713== at 0xA51BA1C: __open_nocancel (open64_nocancel.c:39) +==43713== by 0xA49FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43713== by 0x9E3A822: ??? +==43713== by 0x9E3A96F: ??? +==43713== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43713== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43713== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43713== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43713== by 0xBC12418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43713== by 0xBBABD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43713== by 0xA8A2D38: PetscInitialize (pinit.c:924) +==43713== by 0x9E001D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43713== by 0x9E00227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43713== by 0x11C60C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43713== by 0x117A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43713== by 0x11A4EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43713== by 0x11A38E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43713== by 0x11AA25: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43713== by 0x115E75: main (TestHeartGeometryInformation.cpp:19) +==43713== +==43713== Open file descriptor 116: +==43713== +==43713== +==43713== Open file descriptor 113: +==43713== +==43713== +==43713== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartGeometryInformation_valgrind.txt +==43713== +==43713== +==43713== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43713== +==43713== +==43713== +==43713== HEAP SUMMARY: +==43713== in use at exit: 618,279 bytes in 8,234 blocks +==43713== total heap usage: 2,705,974 allocs, 2,697,740 frees, 1,653,759,538 bytes allocated +==43713== +==43713== LEAK SUMMARY: +==43713== definitely lost: 0 bytes in 0 blocks +==43713== indirectly lost: 0 bytes in 0 blocks +==43713== possibly lost: 0 bytes in 0 blocks +==43713== still reachable: 24 bytes in 2 blocks +==43713== suppressed: 618,255 bytes in 8,232 blocks +==43713== Reachable blocks (those to which a pointer was found) are not shown. +==43713== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43713== +==43713== For lists of detected and suppressed errors, rerun with: -s +==43713== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestHeartRegionCodes_valgrind.txt b/log-files/2024-10-14_17-51-53/TestHeartRegionCodes_valgrind.txt new file mode 100644 index 000000000..477465aa2 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestHeartRegionCodes_valgrind.txt @@ -0,0 +1,36 @@ +==43714== Memcheck, a memory error detector +==43714== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43714== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43714== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartRegionCodes -malloc_debug -malloc_dump -memory_info +==43714== Parent PID: 23966 +==43714== +==43714== +==43714== FILE DESCRIPTORS: 7 open (3 std) at exit. +==43714== Open file descriptor 116: +==43714== +==43714== +==43714== Open file descriptor 113: +==43714== +==43714== +==43714== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartRegionCodes_valgrind.txt +==43714== +==43714== +==43714== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43714== +==43714== +==43714== +==43714== HEAP SUMMARY: +==43714== in use at exit: 24 bytes in 2 blocks +==43714== total heap usage: 7,159 allocs, 7,157 frees, 732,281 bytes allocated +==43714== +==43714== LEAK SUMMARY: +==43714== definitely lost: 0 bytes in 0 blocks +==43714== indirectly lost: 0 bytes in 0 blocks +==43714== possibly lost: 0 bytes in 0 blocks +==43714== still reachable: 24 bytes in 2 blocks +==43714== suppressed: 0 bytes in 0 blocks +==43714== Reachable blocks (those to which a pointer was found) are not shown. +==43714== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43714== +==43714== For lists of detected and suppressed errors, rerun with: -s +==43714== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-10-14_17-51-53/TestHelloWorld_valgrind.txt b/log-files/2024-10-14_17-51-53/TestHelloWorld_valgrind.txt new file mode 100644 index 000000000..8059949d8 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestHelloWorld_valgrind.txt @@ -0,0 +1,73 @@ +==24089== Memcheck, a memory error detector +==24089== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24089== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24089== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestHelloWorld -malloc_debug -malloc_dump -memory_info +==24089== Parent PID: 23966 +==24089== +==24089== +==24089== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24089== Open file descriptor 12: +==24089== at 0x4CB207D: pipe (pipe.c:29) +==24089== by 0xAEAD07D: ??? +==24089== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24089== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24089== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24089== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24089== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24089== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24089== by 0x110C3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24089== by 0x10CB53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24089== by 0x10ED04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24089== by 0x10EC00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24089== by 0x10F213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24089== by 0x10B355: main (TestHelloWorld.cpp:18) +==24089== +==24089== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24089== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24089== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24089== by 0x4934822: ??? +==24089== by 0x493496F: ??? +==24089== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24089== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24089== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24089== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24089== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24089== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24089== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24089== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24089== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24089== by 0x110C3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24089== by 0x10CB53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24089== by 0x10ED04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24089== by 0x10EC00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24089== by 0x10F213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24089== by 0x10B355: main (TestHelloWorld.cpp:18) +==24089== +==24089== Open file descriptor 116: +==24089== +==24089== +==24089== Open file descriptor 113: +==24089== +==24089== +==24089== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHelloWorld_valgrind.txt +==24089== +==24089== +==24089== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24089== +==24089== +==24089== +==24089== HEAP SUMMARY: +==24089== in use at exit: 617,870 bytes in 8,238 blocks +==24089== total heap usage: 44,911 allocs, 36,673 frees, 1,338,159,088 bytes allocated +==24089== +==24089== LEAK SUMMARY: +==24089== definitely lost: 0 bytes in 0 blocks +==24089== indirectly lost: 0 bytes in 0 blocks +==24089== possibly lost: 0 bytes in 0 blocks +==24089== still reachable: 24 bytes in 2 blocks +==24089== suppressed: 617,846 bytes in 8,236 blocks +==24089== Reachable blocks (those to which a pointer was found) are not shown. +==24089== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24089== +==24089== For lists of detected and suppressed errors, rerun with: -s +==24089== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestHeterogeneousConductivities_valgrind.txt b/log-files/2024-10-14_17-51-53/TestHeterogeneousConductivities_valgrind.txt new file mode 100644 index 000000000..f08fb3adc --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestHeterogeneousConductivities_valgrind.txt @@ -0,0 +1,73 @@ +==43726== Memcheck, a memory error detector +==43726== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43726== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43726== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeterogeneousConductivities -malloc_debug -malloc_dump -memory_info +==43726== Parent PID: 23966 +==43726== +==43726== +==43726== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43726== Open file descriptor 12: +==43726== at 0xA7EA07D: pipe (pipe.c:29) +==43726== by 0x1433707D: ??? +==43726== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43726== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43726== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43726== by 0xAB73D38: PetscInitialize (pinit.c:924) +==43726== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43726== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43726== by 0x11BF54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43726== by 0x1174B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43726== by 0x119942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43726== by 0x11983E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43726== by 0x119E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43726== by 0x115CB5: main (TestHeterogeneousConductivities.cpp:18) +==43726== +==43726== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43726== at 0xA7EEA1C: __open_nocancel (open64_nocancel.c:39) +==43726== by 0xA772BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43726== by 0xA10B822: ??? +==43726== by 0xA10B96F: ??? +==43726== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43726== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43726== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43726== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43726== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43726== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43726== by 0xAB73D38: PetscInitialize (pinit.c:924) +==43726== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43726== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43726== by 0x11BF54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43726== by 0x1174B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43726== by 0x119942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43726== by 0x11983E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43726== by 0x119E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43726== by 0x115CB5: main (TestHeterogeneousConductivities.cpp:18) +==43726== +==43726== Open file descriptor 116: +==43726== +==43726== +==43726== Open file descriptor 113: +==43726== +==43726== +==43726== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeterogeneousConductivities_valgrind.txt +==43726== +==43726== +==43726== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43726== +==43726== +==43726== +==43726== HEAP SUMMARY: +==43726== in use at exit: 618,830 bytes in 8,248 blocks +==43726== total heap usage: 201,473 allocs, 193,225 frees, 1,372,226,335 bytes allocated +==43726== +==43726== LEAK SUMMARY: +==43726== definitely lost: 0 bytes in 0 blocks +==43726== indirectly lost: 0 bytes in 0 blocks +==43726== possibly lost: 0 bytes in 0 blocks +==43726== still reachable: 24 bytes in 2 blocks +==43726== suppressed: 618,806 bytes in 8,246 blocks +==43726== Reachable blocks (those to which a pointer was found) are not shown. +==43726== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43726== +==43726== For lists of detected and suppressed errors, rerun with: -s +==43726== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 38) diff --git a/log-files/2024-10-14_17-51-53/TestHeun2IvpOdeSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestHeun2IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..f07d19f00 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestHeun2IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24989== Memcheck, a memory error detector +==24989== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24989== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24989== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestHeun2IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24989== Parent PID: 23966 +==24989== +==24989== +==24989== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24989== Open file descriptor 12: +==24989== at 0x503907D: pipe (pipe.c:29) +==24989== by 0xB1EE07D: ??? +==24989== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24989== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24989== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24989== by 0x5308D38: PetscInitialize (pinit.c:924) +==24989== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24989== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24989== by 0x127368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24989== by 0x1218FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24989== by 0x1243AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24989== by 0x12424F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24989== by 0x1248E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24989== by 0x11EEC5: main (TestHeun2IvpOdeSolver.cpp:19) +==24989== +==24989== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24989== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24989== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24989== by 0x4B76822: ??? +==24989== by 0x4B7696F: ??? +==24989== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24989== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24989== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24989== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24989== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24989== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24989== by 0x5308D38: PetscInitialize (pinit.c:924) +==24989== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24989== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24989== by 0x127368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24989== by 0x1218FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24989== by 0x1243AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24989== by 0x12424F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24989== by 0x1248E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24989== by 0x11EEC5: main (TestHeun2IvpOdeSolver.cpp:19) +==24989== +==24989== Open file descriptor 116: +==24989== +==24989== +==24989== Open file descriptor 113: +==24989== +==24989== +==24989== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeun2IvpOdeSolver_valgrind.txt +==24989== +==24989== +==24989== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24989== +==24989== +==24989== +==24989== HEAP SUMMARY: +==24989== in use at exit: 617,934 bytes in 8,238 blocks +==24989== total heap usage: 93,032 allocs, 84,794 frees, 1,339,245,859 bytes allocated +==24989== +==24989== LEAK SUMMARY: +==24989== definitely lost: 0 bytes in 0 blocks +==24989== indirectly lost: 0 bytes in 0 blocks +==24989== possibly lost: 0 bytes in 0 blocks +==24989== still reachable: 24 bytes in 2 blocks +==24989== suppressed: 617,910 bytes in 8,236 blocks +==24989== Reachable blocks (those to which a pointer was found) are not shown. +==24989== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24989== +==24989== For lists of detected and suppressed errors, rerun with: -s +==24989== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt new file mode 100644 index 000000000..1330f764b --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==41718== Memcheck, a memory error detector +==41718== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41718== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41718== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem -malloc_debug -malloc_dump -memory_info +==41718== Parent PID: 23966 +==41718== +==41718== +==41718== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41718== Open file descriptor 12: +==41718== at 0x856F07D: pipe (pipe.c:29) +==41718== by 0x1433707D: ??? +==41718== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41718== by 0x9C6A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41718== by 0x9C03D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41718== by 0x88FAD38: PetscInitialize (pinit.c:924) +==41718== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41718== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41718== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41718== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41718== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41718== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41718== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41718== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) +==41718== +==41718== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41718== at 0x8573A1C: __open_nocancel (open64_nocancel.c:39) +==41718== by 0x84F7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41718== by 0x81D5822: ??? +==41718== by 0x81D596F: ??? +==41718== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41718== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41718== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41718== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41718== by 0x9C6A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41718== by 0x9C03D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41718== by 0x88FAD38: PetscInitialize (pinit.c:924) +==41718== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41718== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41718== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41718== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41718== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41718== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41718== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41718== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) +==41718== +==41718== Open file descriptor 116: +==41718== +==41718== +==41718== Open file descriptor 113: +==41718== +==41718== +==41718== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt +==41718== +==41718== +==41718== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41718== +==41718== +==41718== +==41718== HEAP SUMMARY: +==41718== in use at exit: 618,350 bytes in 8,238 blocks +==41718== total heap usage: 49,004 allocs, 40,766 frees, 1,338,535,098 bytes allocated +==41718== +==41718== LEAK SUMMARY: +==41718== definitely lost: 0 bytes in 0 blocks +==41718== indirectly lost: 0 bytes in 0 blocks +==41718== possibly lost: 0 bytes in 0 blocks +==41718== still reachable: 24 bytes in 2 blocks +==41718== suppressed: 618,326 bytes in 8,236 blocks +==41718== Reachable blocks (those to which a pointer was found) are not shown. +==41718== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41718== +==41718== For lists of detected and suppressed errors, rerun with: -s +==41718== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestHoneycombMeshGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..56acc62ec --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24554== Memcheck, a memory error detector +==24554== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24554== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24554== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24554== Parent PID: 23966 +==24554== +==24554== +==24554== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24554== Open file descriptor 12: +==24554== at 0x81F807D: pipe (pipe.c:29) +==24554== by 0x100D407D: ??? +==24554== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24554== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24554== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24554== by 0x6686D38: PetscInitialize (pinit.c:924) +==24554== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24554== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24554== by 0x11C935: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24554== by 0x1177CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24554== by 0x11A508: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24554== by 0x11A3A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24554== by 0x11AA3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24554== by 0x115BF5: main (TestHoneycombMeshGenerator.cpp:19) +==24554== +==24554== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24554== at 0x81FCA1C: __open_nocancel (open64_nocancel.c:39) +==24554== by 0x8180BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24554== by 0x7915822: ??? +==24554== by 0x791596F: ??? +==24554== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24554== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24554== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24554== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24554== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24554== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24554== by 0x6686D38: PetscInitialize (pinit.c:924) +==24554== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24554== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24554== by 0x11C935: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24554== by 0x1177CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24554== by 0x11A508: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24554== by 0x11A3A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24554== by 0x11AA3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24554== by 0x115BF5: main (TestHoneycombMeshGenerator.cpp:19) +==24554== +==24554== Open file descriptor 116: +==24554== +==24554== +==24554== Open file descriptor 113: +==24554== +==24554== +==24554== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHoneycombMeshGenerator_valgrind.txt +==24554== +==24554== +==24554== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24554== +==24554== +==24554== +==24554== HEAP SUMMARY: +==24554== in use at exit: 620,790 bytes in 8,239 blocks +==24554== total heap usage: 1,200,545 allocs, 1,192,306 frees, 1,378,997,501 bytes allocated +==24554== +==24554== LEAK SUMMARY: +==24554== definitely lost: 0 bytes in 0 blocks +==24554== indirectly lost: 0 bytes in 0 blocks +==24554== possibly lost: 0 bytes in 0 blocks +==24554== still reachable: 2,576 bytes in 3 blocks +==24554== suppressed: 618,214 bytes in 8,236 blocks +==24554== Reachable blocks (those to which a pointer was found) are not shown. +==24554== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24554== +==24554== For lists of detected and suppressed errors, rerun with: -s +==24554== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-10-14_17-51-53/TestHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..880042c8e --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24692== Memcheck, a memory error detector +==24692== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24692== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24692== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24692== Parent PID: 23966 +==24692== +==24692== +==24692== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24692== Open file descriptor 12: +==24692== at 0x6C5C07D: pipe (pipe.c:29) +==24692== by 0x100D407D: ??? +==24692== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24692== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24692== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24692== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24692== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24692== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24692== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24692== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24692== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24692== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24692== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24692== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) +==24692== +==24692== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24692== at 0x6C60A1C: __open_nocancel (open64_nocancel.c:39) +==24692== by 0x6BE4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24692== by 0x6597822: ??? +==24692== by 0x659796F: ??? +==24692== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24692== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24692== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24692== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24692== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24692== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24692== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24692== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24692== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24692== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24692== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24692== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24692== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24692== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24692== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) +==24692== +==24692== Open file descriptor 116: +==24692== +==24692== +==24692== Open file descriptor 113: +==24692== +==24692== +==24692== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHoneycombVertexMeshGenerator_valgrind.txt +==24692== +==24692== +==24692== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24692== +==24692== +==24692== +==24692== HEAP SUMMARY: +==24692== in use at exit: 618,238 bytes in 8,238 blocks +==24692== total heap usage: 412,636 allocs, 404,398 frees, 1,357,653,738 bytes allocated +==24692== +==24692== LEAK SUMMARY: +==24692== definitely lost: 0 bytes in 0 blocks +==24692== indirectly lost: 0 bytes in 0 blocks +==24692== possibly lost: 0 bytes in 0 blocks +==24692== still reachable: 24 bytes in 2 blocks +==24692== suppressed: 618,214 bytes in 8,236 blocks +==24692== Reachable blocks (those to which a pointer was found) are not shown. +==24692== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24692== +==24692== For lists of detected and suppressed errors, rerun with: -s +==24692== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestImmersedBoundary2dArrays_valgrind.txt b/log-files/2024-10-14_17-51-53/TestImmersedBoundary2dArrays_valgrind.txt new file mode 100644 index 000000000..29bcc6c75 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestImmersedBoundary2dArrays_valgrind.txt @@ -0,0 +1,73 @@ +==24805== Memcheck, a memory error detector +==24805== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24805== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24805== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundary2dArrays -malloc_debug -malloc_dump -memory_info +==24805== Parent PID: 23966 +==24805== +==24805== +==24805== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24805== Open file descriptor 12: +==24805== at 0x81F807D: pipe (pipe.c:29) +==24805== by 0x100D407D: ??? +==24805== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24805== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24805== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24805== by 0x6686D38: PetscInitialize (pinit.c:924) +==24805== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24805== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24805== by 0x12E481: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24805== by 0x129F13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24805== by 0x12C4B2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24805== by 0x12C3AD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24805== by 0x12C9C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24805== by 0x128715: main (TestImmersedBoundary2dArrays.cpp:18) +==24805== +==24805== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24805== at 0x81FCA1C: __open_nocancel (open64_nocancel.c:39) +==24805== by 0x8180BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24805== by 0x7915822: ??? +==24805== by 0x791596F: ??? +==24805== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24805== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24805== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24805== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24805== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24805== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24805== by 0x6686D38: PetscInitialize (pinit.c:924) +==24805== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24805== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24805== by 0x12E481: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24805== by 0x129F13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24805== by 0x12C4B2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24805== by 0x12C3AD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24805== by 0x12C9C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24805== by 0x128715: main (TestImmersedBoundary2dArrays.cpp:18) +==24805== +==24805== Open file descriptor 116: +==24805== +==24805== +==24805== Open file descriptor 113: +==24805== +==24805== +==24805== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundary2dArrays_valgrind.txt +==24805== +==24805== +==24805== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24805== +==24805== +==24805== +==24805== HEAP SUMMARY: +==24805== in use at exit: 620,790 bytes in 8,239 blocks +==24805== total heap usage: 49,873 allocs, 41,634 frees, 1,345,273,323 bytes allocated +==24805== +==24805== LEAK SUMMARY: +==24805== definitely lost: 0 bytes in 0 blocks +==24805== indirectly lost: 0 bytes in 0 blocks +==24805== possibly lost: 0 bytes in 0 blocks +==24805== still reachable: 2,576 bytes in 3 blocks +==24805== suppressed: 618,214 bytes in 8,236 blocks +==24805== Reachable blocks (those to which a pointer was found) are not shown. +==24805== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24805== +==24805== For lists of detected and suppressed errors, rerun with: -s +==24805== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-10-14_17-51-53/TestImmersedBoundaryCellPopulation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryCellPopulation_valgrind.txt new file mode 100644 index 000000000..1fcf0fe47 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==25981== Memcheck, a memory error detector +==25981== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25981== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25981== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundaryCellPopulation -malloc_debug -malloc_dump -memory_info +==25981== Parent PID: 23966 +==25981== +==25981== +==25981== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25981== Open file descriptor 12: +==25981== at 0x10CFA07D: pipe (pipe.c:29) +==25981== by 0x196BC07D: ??? +==25981== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25981== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25981== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25981== by 0xF292D38: PetscInitialize (pinit.c:924) +==25981== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25981== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25981== by 0x17AFD3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25981== by 0x1732C9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25981== by 0x1765FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25981== by 0x17649C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25981== by 0x176B33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25981== by 0x1716E5: main (TestImmersedBoundaryCellPopulation.cpp:19) +==25981== +==25981== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25981== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==25981== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25981== by 0xF13E822: ??? +==25981== by 0xF13E96F: ??? +==25981== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25981== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25981== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25981== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25981== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25981== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25981== by 0xF292D38: PetscInitialize (pinit.c:924) +==25981== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25981== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25981== by 0x17AFD3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25981== by 0x1732C9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25981== by 0x1765FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25981== by 0x17649C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25981== by 0x176B33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25981== by 0x1716E5: main (TestImmersedBoundaryCellPopulation.cpp:19) +==25981== +==25981== Open file descriptor 116: +==25981== +==25981== +==25981== Open file descriptor 113: +==25981== +==25981== +==25981== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryCellPopulation_valgrind.txt +==25981== +==25981== +==25981== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25981== +==25981== +==25981== +==25981== HEAP SUMMARY: +==25981== in use at exit: 618,366 bytes in 8,239 blocks +==25981== total heap usage: 114,148 allocs, 105,909 frees, 1,385,784,416 bytes allocated +==25981== +==25981== LEAK SUMMARY: +==25981== definitely lost: 0 bytes in 0 blocks +==25981== indirectly lost: 0 bytes in 0 blocks +==25981== possibly lost: 0 bytes in 0 blocks +==25981== still reachable: 56 bytes in 3 blocks +==25981== suppressed: 618,310 bytes in 8,236 blocks +==25981== Reachable blocks (those to which a pointer was found) are not shown. +==25981== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25981== +==25981== For lists of detected and suppressed errors, rerun with: -s +==25981== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestImmersedBoundaryDivisionRules_valgrind.txt b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryDivisionRules_valgrind.txt new file mode 100644 index 000000000..4e6bedcd1 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==26000== Memcheck, a memory error detector +==26000== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26000== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26000== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundaryDivisionRules -malloc_debug -malloc_dump -memory_info +==26000== Parent PID: 23966 +==26000== +==26000== +==26000== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26000== Open file descriptor 12: +==26000== at 0x10CFA07D: pipe (pipe.c:29) +==26000== by 0x196BC07D: ??? +==26000== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26000== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26000== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26000== by 0xF292D38: PetscInitialize (pinit.c:924) +==26000== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26000== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26000== by 0x13B60B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26000== by 0x136903: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26000== by 0x138ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26000== by 0x138DD4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26000== by 0x1393E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26000== by 0x135105: main (TestImmersedBoundaryDivisionRules.cpp:18) +==26000== +==26000== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26000== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==26000== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26000== by 0xF13E822: ??? +==26000== by 0xF13E96F: ??? +==26000== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26000== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26000== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26000== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26000== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26000== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26000== by 0xF292D38: PetscInitialize (pinit.c:924) +==26000== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26000== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26000== by 0x13B60B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26000== by 0x136903: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26000== by 0x138ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26000== by 0x138DD4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26000== by 0x1393E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26000== by 0x135105: main (TestImmersedBoundaryDivisionRules.cpp:18) +==26000== +==26000== Open file descriptor 116: +==26000== +==26000== +==26000== Open file descriptor 113: +==26000== +==26000== +==26000== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryDivisionRules_valgrind.txt +==26000== +==26000== +==26000== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26000== +==26000== +==26000== +==26000== HEAP SUMMARY: +==26000== in use at exit: 618,366 bytes in 8,239 blocks +==26000== total heap usage: 53,310 allocs, 45,071 frees, 1,339,216,949 bytes allocated +==26000== +==26000== LEAK SUMMARY: +==26000== definitely lost: 0 bytes in 0 blocks +==26000== indirectly lost: 0 bytes in 0 blocks +==26000== possibly lost: 0 bytes in 0 blocks +==26000== still reachable: 56 bytes in 3 blocks +==26000== suppressed: 618,310 bytes in 8,236 blocks +==26000== Reachable blocks (those to which a pointer was found) are not shown. +==26000== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26000== +==26000== For lists of detected and suppressed errors, rerun with: -s +==26000== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestImmersedBoundaryElement_valgrind.txt b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryElement_valgrind.txt new file mode 100644 index 000000000..bcc97aa13 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryElement_valgrind.txt @@ -0,0 +1,73 @@ +==24815== Memcheck, a memory error detector +==24815== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24815== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24815== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryElement -malloc_debug -malloc_dump -memory_info +==24815== Parent PID: 23966 +==24815== +==24815== +==24815== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24815== Open file descriptor 12: +==24815== at 0x7DCC07D: pipe (pipe.c:29) +==24815== by 0x100D407D: ??? +==24815== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24815== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24815== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24815== by 0x6686D38: PetscInitialize (pinit.c:924) +==24815== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24815== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24815== by 0x119A65: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24815== by 0x11544D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24815== by 0x117AA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24815== by 0x117942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24815== by 0x117FD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24815== by 0x113875: main (TestImmersedBoundaryElement.cpp:19) +==24815== +==24815== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24815== at 0x7DD0A1C: __open_nocancel (open64_nocancel.c:39) +==24815== by 0x7D54BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24815== by 0x7915822: ??? +==24815== by 0x791596F: ??? +==24815== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24815== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24815== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24815== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24815== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24815== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24815== by 0x6686D38: PetscInitialize (pinit.c:924) +==24815== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24815== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24815== by 0x119A65: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24815== by 0x11544D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24815== by 0x117AA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24815== by 0x117942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24815== by 0x117FD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24815== by 0x113875: main (TestImmersedBoundaryElement.cpp:19) +==24815== +==24815== Open file descriptor 116: +==24815== +==24815== +==24815== Open file descriptor 113: +==24815== +==24815== +==24815== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryElement_valgrind.txt +==24815== +==24815== +==24815== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24815== +==24815== +==24815== +==24815== HEAP SUMMARY: +==24815== in use at exit: 618,238 bytes in 8,238 blocks +==24815== total heap usage: 47,353 allocs, 39,115 frees, 1,338,385,688 bytes allocated +==24815== +==24815== LEAK SUMMARY: +==24815== definitely lost: 0 bytes in 0 blocks +==24815== indirectly lost: 0 bytes in 0 blocks +==24815== possibly lost: 0 bytes in 0 blocks +==24815== still reachable: 24 bytes in 2 blocks +==24815== suppressed: 618,214 bytes in 8,236 blocks +==24815== Reachable blocks (those to which a pointer was found) are not shown. +==24815== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24815== +==24815== For lists of detected and suppressed errors, rerun with: -s +==24815== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-10-14_17-51-53/TestImmersedBoundaryFftInterface_valgrind.txt b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryFftInterface_valgrind.txt new file mode 100644 index 000000000..df864cfe4 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryFftInterface_valgrind.txt @@ -0,0 +1,73 @@ +==24822== Memcheck, a memory error detector +==24822== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24822== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24822== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryFftInterface -malloc_debug -malloc_dump -memory_info +==24822== Parent PID: 23966 +==24822== +==24822== +==24822== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24822== Open file descriptor 12: +==24822== at 0x811107D: pipe (pipe.c:29) +==24822== by 0x100D407D: ??? +==24822== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24822== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24822== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24822== by 0x6686D38: PetscInitialize (pinit.c:924) +==24822== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24822== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24822== by 0x11A441: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24822== by 0x115DD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24822== by 0x1184B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24822== by 0x1183B3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24822== by 0x1189C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24822== by 0x1145D5: main (TestImmersedBoundaryFftInterface.cpp:18) +==24822== +==24822== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24822== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24822== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24822== by 0x7915822: ??? +==24822== by 0x791596F: ??? +==24822== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24822== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24822== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24822== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24822== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24822== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24822== by 0x6686D38: PetscInitialize (pinit.c:924) +==24822== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24822== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24822== by 0x11A441: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24822== by 0x115DD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24822== by 0x1184B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24822== by 0x1183B3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24822== by 0x1189C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24822== by 0x1145D5: main (TestImmersedBoundaryFftInterface.cpp:18) +==24822== +==24822== Open file descriptor 116: +==24822== +==24822== +==24822== Open file descriptor 113: +==24822== +==24822== +==24822== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryFftInterface_valgrind.txt +==24822== +==24822== +==24822== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24822== +==24822== +==24822== +==24822== HEAP SUMMARY: +==24822== in use at exit: 618,238 bytes in 8,238 blocks +==24822== total heap usage: 48,770 allocs, 40,532 frees, 1,346,895,463 bytes allocated +==24822== +==24822== LEAK SUMMARY: +==24822== definitely lost: 0 bytes in 0 blocks +==24822== indirectly lost: 0 bytes in 0 blocks +==24822== possibly lost: 0 bytes in 0 blocks +==24822== still reachable: 24 bytes in 2 blocks +==24822== suppressed: 618,214 bytes in 8,236 blocks +==24822== Reachable blocks (those to which a pointer was found) are not shown. +==24822== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24822== +==24822== For lists of detected and suppressed errors, rerun with: -s +==24822== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestImmersedBoundaryForces_valgrind.txt b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryForces_valgrind.txt new file mode 100644 index 000000000..6effc35a7 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryForces_valgrind.txt @@ -0,0 +1,73 @@ +==26024== Memcheck, a memory error detector +==26024== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26024== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26024== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundaryForces -malloc_debug -malloc_dump -memory_info +==26024== Parent PID: 23966 +==26024== +==26024== +==26024== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26024== Open file descriptor 12: +==26024== at 0x10D8907D: pipe (pipe.c:29) +==26024== by 0x196BC07D: ??? +==26024== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26024== by 0x10691418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26024== by 0x1062AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26024== by 0xF321D38: PetscInitialize (pinit.c:924) +==26024== by 0xF1931D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26024== by 0xF193227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26024== by 0x14A869: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26024== by 0x1430BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26024== by 0x145F70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26024== by 0x145E10: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26024== by 0x1464A7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26024== by 0x1414E5: main (TestImmersedBoundaryForces.cpp:19) +==26024== +==26024== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26024== at 0x10D8DA1C: __open_nocancel (open64_nocancel.c:39) +==26024== by 0x10D11BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26024== by 0xF1CD822: ??? +==26024== by 0xF1CD96F: ??? +==26024== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26024== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26024== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26024== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26024== by 0x10691418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26024== by 0x1062AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26024== by 0xF321D38: PetscInitialize (pinit.c:924) +==26024== by 0xF1931D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26024== by 0xF193227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26024== by 0x14A869: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26024== by 0x1430BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26024== by 0x145F70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26024== by 0x145E10: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26024== by 0x1464A7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26024== by 0x1414E5: main (TestImmersedBoundaryForces.cpp:19) +==26024== +==26024== Open file descriptor 116: +==26024== +==26024== +==26024== Open file descriptor 113: +==26024== +==26024== +==26024== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryForces_valgrind.txt +==26024== +==26024== +==26024== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26024== +==26024== +==26024== +==26024== HEAP SUMMARY: +==26024== in use at exit: 618,366 bytes in 8,239 blocks +==26024== total heap usage: 63,276 allocs, 55,037 frees, 1,343,085,541 bytes allocated +==26024== +==26024== LEAK SUMMARY: +==26024== definitely lost: 0 bytes in 0 blocks +==26024== indirectly lost: 0 bytes in 0 blocks +==26024== possibly lost: 0 bytes in 0 blocks +==26024== still reachable: 56 bytes in 3 blocks +==26024== suppressed: 618,310 bytes in 8,236 blocks +==26024== Reachable blocks (those to which a pointer was found) are not shown. +==26024== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26024== +==26024== For lists of detected and suppressed errors, rerun with: -s +==26024== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..55b42f505 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24835== Memcheck, a memory error detector +==24835== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24835== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24835== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24835== Parent PID: 23966 +==24835== +==24835== +==24835== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24835== Open file descriptor 12: +==24835== at 0x811107D: pipe (pipe.c:29) +==24835== by 0x100D407D: ??? +==24835== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24835== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24835== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24835== by 0x6686D38: PetscInitialize (pinit.c:924) +==24835== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24835== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24835== by 0x11345D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24835== by 0x10EDD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24835== by 0x111410: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24835== by 0x11130B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24835== by 0x11191F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24835== by 0x10D5D5: main (TestImmersedBoundaryHoneycombMeshGenerator.cpp:18) +==24835== +==24835== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24835== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24835== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24835== by 0x7915822: ??? +==24835== by 0x791596F: ??? +==24835== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24835== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24835== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24835== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24835== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24835== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24835== by 0x6686D38: PetscInitialize (pinit.c:924) +==24835== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24835== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24835== by 0x11345D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24835== by 0x10EDD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24835== by 0x111410: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24835== by 0x11130B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24835== by 0x11191F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24835== by 0x10D5D5: main (TestImmersedBoundaryHoneycombMeshGenerator.cpp:18) +==24835== +==24835== Open file descriptor 116: +==24835== +==24835== +==24835== Open file descriptor 113: +==24835== +==24835== +==24835== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt +==24835== +==24835== +==24835== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24835== +==24835== +==24835== +==24835== HEAP SUMMARY: +==24835== in use at exit: 618,238 bytes in 8,238 blocks +==24835== total heap usage: 51,861 allocs, 43,623 frees, 1,340,453,054 bytes allocated +==24835== +==24835== LEAK SUMMARY: +==24835== definitely lost: 0 bytes in 0 blocks +==24835== indirectly lost: 0 bytes in 0 blocks +==24835== possibly lost: 0 bytes in 0 blocks +==24835== still reachable: 24 bytes in 2 blocks +==24835== suppressed: 618,214 bytes in 8,236 blocks +==24835== Reachable blocks (those to which a pointer was found) are not shown. +==24835== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24835== +==24835== For lists of detected and suppressed errors, rerun with: -s +==24835== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestImmersedBoundaryMeshReader_valgrind.txt b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryMeshReader_valgrind.txt new file mode 100644 index 000000000..029f9383e --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24847== Memcheck, a memory error detector +==24847== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24847== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24847== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMeshReader -malloc_debug -malloc_dump -memory_info +==24847== Parent PID: 23966 +==24847== +==24847== +==24847== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24847== Open file descriptor 12: +==24847== at 0x811107D: pipe (pipe.c:29) +==24847== by 0x100D407D: ??? +==24847== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24847== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24847== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24847== by 0x6686D38: PetscInitialize (pinit.c:924) +==24847== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24847== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24847== by 0x119F95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24847== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24847== by 0x117F84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24847== by 0x117E25: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24847== by 0x1184BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24847== by 0x113AB5: main (TestImmersedBoundaryMeshReader.cpp:19) +==24847== +==24847== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24847== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24847== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24847== by 0x7915822: ??? +==24847== by 0x791596F: ??? +==24847== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24847== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24847== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24847== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24847== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24847== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24847== by 0x6686D38: PetscInitialize (pinit.c:924) +==24847== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24847== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24847== by 0x119F95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24847== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24847== by 0x117F84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24847== by 0x117E25: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24847== by 0x1184BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24847== by 0x113AB5: main (TestImmersedBoundaryMeshReader.cpp:19) +==24847== +==24847== Open file descriptor 116: +==24847== +==24847== +==24847== Open file descriptor 113: +==24847== +==24847== +==24847== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMeshReader_valgrind.txt +==24847== +==24847== +==24847== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24847== +==24847== +==24847== +==24847== HEAP SUMMARY: +==24847== in use at exit: 618,238 bytes in 8,238 blocks +==24847== total heap usage: 49,719 allocs, 41,481 frees, 1,339,666,673 bytes allocated +==24847== +==24847== LEAK SUMMARY: +==24847== definitely lost: 0 bytes in 0 blocks +==24847== indirectly lost: 0 bytes in 0 blocks +==24847== possibly lost: 0 bytes in 0 blocks +==24847== still reachable: 24 bytes in 2 blocks +==24847== suppressed: 618,214 bytes in 8,236 blocks +==24847== Reachable blocks (those to which a pointer was found) are not shown. +==24847== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24847== +==24847== For lists of detected and suppressed errors, rerun with: -s +==24847== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestImmersedBoundaryMeshWriter_valgrind.txt b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryMeshWriter_valgrind.txt new file mode 100644 index 000000000..9a7fc1682 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryMeshWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24860== Memcheck, a memory error detector +==24860== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24860== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24860== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMeshWriter -malloc_debug -malloc_dump -memory_info +==24860== Parent PID: 23966 +==24860== +==24860== +==24860== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24860== Open file descriptor 12: +==24860== at 0x81F807D: pipe (pipe.c:29) +==24860== by 0x100D407D: ??? +==24860== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24860== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24860== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24860== by 0x6686D38: PetscInitialize (pinit.c:924) +==24860== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24860== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24860== by 0x12285F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24860== by 0x11C5F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24860== by 0x11EE24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24860== by 0x11ED1F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24860== by 0x11F333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24860== by 0x11ADF5: main (TestImmersedBoundaryMeshWriter.cpp:18) +==24860== +==24860== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24860== at 0x81FCA1C: __open_nocancel (open64_nocancel.c:39) +==24860== by 0x8180BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24860== by 0x7915822: ??? +==24860== by 0x791596F: ??? +==24860== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24860== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24860== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24860== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24860== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24860== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24860== by 0x6686D38: PetscInitialize (pinit.c:924) +==24860== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24860== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24860== by 0x12285F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24860== by 0x11C5F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24860== by 0x11EE24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24860== by 0x11ED1F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24860== by 0x11F333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24860== by 0x11ADF5: main (TestImmersedBoundaryMeshWriter.cpp:18) +==24860== +==24860== Open file descriptor 116: +==24860== +==24860== +==24860== Open file descriptor 113: +==24860== +==24860== +==24860== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMeshWriter_valgrind.txt +==24860== +==24860== +==24860== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24860== +==24860== +==24860== +==24860== HEAP SUMMARY: +==24860== in use at exit: 618,238 bytes in 8,238 blocks +==24860== total heap usage: 49,820 allocs, 41,582 frees, 1,339,464,889 bytes allocated +==24860== +==24860== LEAK SUMMARY: +==24860== definitely lost: 0 bytes in 0 blocks +==24860== indirectly lost: 0 bytes in 0 blocks +==24860== possibly lost: 0 bytes in 0 blocks +==24860== still reachable: 24 bytes in 2 blocks +==24860== suppressed: 618,214 bytes in 8,236 blocks +==24860== Reachable blocks (those to which a pointer was found) are not shown. +==24860== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24860== +==24860== For lists of detected and suppressed errors, rerun with: -s +==24860== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestImmersedBoundaryMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryMesh_valgrind.txt new file mode 100644 index 000000000..c9954429f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24846== Memcheck, a memory error detector +==24846== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24846== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24846== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMesh -malloc_debug -malloc_dump -memory_info +==24846== Parent PID: 23966 +==24846== +==24846== +==24846== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24846== Open file descriptor 12: +==24846== at 0x82CB07D: pipe (pipe.c:29) +==24846== by 0x100D407D: ??? +==24846== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24846== by 0x7AEC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24846== by 0x7A85D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24846== by 0x677CD38: PetscInitialize (pinit.c:924) +==24846== by 0x65EC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24846== by 0x65EC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24846== by 0x161451: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24846== by 0x15BC59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24846== by 0x15EDDE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24846== by 0x15EC7F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24846== by 0x15F315: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24846== by 0x15A075: main (TestImmersedBoundaryMesh.cpp:19) +==24846== +==24846== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24846== at 0x82CFA1C: __open_nocancel (open64_nocancel.c:39) +==24846== by 0x8253BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24846== by 0x6626822: ??? +==24846== by 0x662696F: ??? +==24846== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24846== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24846== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24846== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24846== by 0x7AEC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24846== by 0x7A85D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24846== by 0x677CD38: PetscInitialize (pinit.c:924) +==24846== by 0x65EC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24846== by 0x65EC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24846== by 0x161451: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24846== by 0x15BC59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24846== by 0x15EDDE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24846== by 0x15EC7F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24846== by 0x15F315: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24846== by 0x15A075: main (TestImmersedBoundaryMesh.cpp:19) +==24846== +==24846== Open file descriptor 116: +==24846== +==24846== +==24846== Open file descriptor 113: +==24846== +==24846== +==24846== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMesh_valgrind.txt +==24846== +==24846== +==24846== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24846== +==24846== +==24846== +==24846== HEAP SUMMARY: +==24846== in use at exit: 620,790 bytes in 8,239 blocks +==24846== total heap usage: 94,787 allocs, 86,548 frees, 1,370,840,582 bytes allocated +==24846== +==24846== LEAK SUMMARY: +==24846== definitely lost: 0 bytes in 0 blocks +==24846== indirectly lost: 0 bytes in 0 blocks +==24846== possibly lost: 0 bytes in 0 blocks +==24846== still reachable: 2,576 bytes in 3 blocks +==24846== suppressed: 618,214 bytes in 8,236 blocks +==24846== Reachable blocks (those to which a pointer was found) are not shown. +==24846== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24846== +==24846== For lists of detected and suppressed errors, rerun with: -s +==24846== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt new file mode 100644 index 000000000..b2f4b3e1f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24861== Memcheck, a memory error detector +==24861== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24861== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24861== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryPalisadeMeshGenerator -malloc_debug -malloc_dump -memory_info +==24861== Parent PID: 23966 +==24861== +==24861== +==24861== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24861== Open file descriptor 12: +==24861== at 0x811107D: pipe (pipe.c:29) +==24861== by 0x100D407D: ??? +==24861== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24861== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24861== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24861== by 0x6686D38: PetscInitialize (pinit.c:924) +==24861== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24861== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24861== by 0x114D1D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24861== by 0x1103ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24861== by 0x112D9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24861== by 0x112C3A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24861== by 0x1132D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24861== by 0x10E815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) +==24861== +==24861== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24861== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24861== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24861== by 0x7915822: ??? +==24861== by 0x791596F: ??? +==24861== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24861== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24861== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24861== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24861== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24861== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24861== by 0x6686D38: PetscInitialize (pinit.c:924) +==24861== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24861== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24861== by 0x114D1D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24861== by 0x1103ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24861== by 0x112D9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24861== by 0x112C3A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24861== by 0x1132D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24861== by 0x10E815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) +==24861== +==24861== Open file descriptor 116: +==24861== +==24861== +==24861== Open file descriptor 113: +==24861== +==24861== +==24861== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt +==24861== +==24861== +==24861== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24861== +==24861== +==24861== +==24861== HEAP SUMMARY: +==24861== in use at exit: 620,790 bytes in 8,239 blocks +==24861== total heap usage: 57,743 allocs, 49,504 frees, 1,359,244,047 bytes allocated +==24861== +==24861== LEAK SUMMARY: +==24861== definitely lost: 0 bytes in 0 blocks +==24861== indirectly lost: 0 bytes in 0 blocks +==24861== possibly lost: 0 bytes in 0 blocks +==24861== still reachable: 2,576 bytes in 3 blocks +==24861== suppressed: 618,214 bytes in 8,236 blocks +==24861== Reachable blocks (those to which a pointer was found) are not shown. +==24861== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24861== +==24861== For lists of detected and suppressed errors, rerun with: -s +==24861== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestImmersedBoundarySimulationModifier_valgrind.txt b/log-files/2024-10-14_17-51-53/TestImmersedBoundarySimulationModifier_valgrind.txt new file mode 100644 index 000000000..3999b9fa1 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestImmersedBoundarySimulationModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26397== Memcheck, a memory error detector +==26397== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26397== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26397== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundarySimulationModifier -malloc_debug -malloc_dump -memory_info +==26397== Parent PID: 23966 +==26397== +==26397== +==26397== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26397== Open file descriptor 12: +==26397== at 0x10CFA07D: pipe (pipe.c:29) +==26397== by 0x196BC07D: ??? +==26397== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26397== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26397== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26397== by 0xF292D38: PetscInitialize (pinit.c:924) +==26397== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26397== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26397== by 0x15313B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26397== by 0x14B9ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26397== by 0x14EA8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26397== by 0x14E92E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26397== by 0x14EFC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26397== by 0x149E15: main (TestImmersedBoundarySimulationModifier.cpp:19) +==26397== +==26397== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26397== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==26397== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26397== by 0xF13E822: ??? +==26397== by 0xF13E96F: ??? +==26397== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26397== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26397== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26397== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26397== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26397== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26397== by 0xF292D38: PetscInitialize (pinit.c:924) +==26397== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26397== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26397== by 0x15313B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26397== by 0x14B9ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26397== by 0x14EA8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26397== by 0x14E92E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26397== by 0x14EFC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26397== by 0x149E15: main (TestImmersedBoundarySimulationModifier.cpp:19) +==26397== +==26397== Open file descriptor 116: +==26397== +==26397== +==26397== Open file descriptor 113: +==26397== +==26397== +==26397== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundarySimulationModifier_valgrind.txt +==26397== +==26397== +==26397== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26397== +==26397== +==26397== +==26397== HEAP SUMMARY: +==26397== in use at exit: 618,295 bytes in 8,235 blocks +==26397== total heap usage: 3,405,973 allocs, 3,397,738 frees, 1,588,210,960 bytes allocated +==26397== +==26397== LEAK SUMMARY: +==26397== definitely lost: 0 bytes in 0 blocks +==26397== indirectly lost: 0 bytes in 0 blocks +==26397== possibly lost: 0 bytes in 0 blocks +==26397== still reachable: 56 bytes in 3 blocks +==26397== suppressed: 618,239 bytes in 8,232 blocks +==26397== Reachable blocks (those to which a pointer was found) are not shown. +==26397== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26397== +==26397== For lists of detected and suppressed errors, rerun with: -s +==26397== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestImmersedBoundarySvgWriter_valgrind.txt b/log-files/2024-10-14_17-51-53/TestImmersedBoundarySvgWriter_valgrind.txt new file mode 100644 index 000000000..09bb40569 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestImmersedBoundarySvgWriter_valgrind.txt @@ -0,0 +1,73 @@ +==26398== Memcheck, a memory error detector +==26398== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26398== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26398== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundarySvgWriter -malloc_debug -malloc_dump -memory_info +==26398== Parent PID: 23966 +==26398== +==26398== +==26398== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26398== Open file descriptor 12: +==26398== at 0x10CFA07D: pipe (pipe.c:29) +==26398== by 0x196BC07D: ??? +==26398== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26398== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26398== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26398== by 0xF292D38: PetscInitialize (pinit.c:924) +==26398== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26398== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26398== by 0x1430FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26398== by 0x13BF73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26398== by 0x13ECEA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26398== by 0x13EBE5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26398== by 0x13F1F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26398== by 0x13A775: main (TestImmersedBoundarySvgWriter.cpp:18) +==26398== +==26398== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26398== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==26398== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26398== by 0xF13E822: ??? +==26398== by 0xF13E96F: ??? +==26398== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26398== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26398== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26398== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26398== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26398== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26398== by 0xF292D38: PetscInitialize (pinit.c:924) +==26398== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26398== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26398== by 0x1430FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26398== by 0x13BF73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26398== by 0x13ECEA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26398== by 0x13EBE5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26398== by 0x13F1F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26398== by 0x13A775: main (TestImmersedBoundarySvgWriter.cpp:18) +==26398== +==26398== Open file descriptor 116: +==26398== +==26398== +==26398== Open file descriptor 113: +==26398== +==26398== +==26398== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundarySvgWriter_valgrind.txt +==26398== +==26398== +==26398== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26398== +==26398== +==26398== +==26398== HEAP SUMMARY: +==26398== in use at exit: 620,886 bytes in 8,239 blocks +==26398== total heap usage: 53,571 allocs, 45,332 frees, 1,339,069,928 bytes allocated +==26398== +==26398== LEAK SUMMARY: +==26398== definitely lost: 0 bytes in 0 blocks +==26398== indirectly lost: 0 bytes in 0 blocks +==26398== possibly lost: 0 bytes in 0 blocks +==26398== still reachable: 2,576 bytes in 3 blocks +==26398== suppressed: 618,310 bytes in 8,236 blocks +==26398== Reachable blocks (those to which a pointer was found) are not shown. +==26398== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26398== +==26398== For lists of detected and suppressed errors, rerun with: -s +==26398== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-10-14_17-51-53/TestImpedancePostProcessor_valgrind.txt b/log-files/2024-10-14_17-51-53/TestImpedancePostProcessor_valgrind.txt new file mode 100644 index 000000000..3d7467ebe --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestImpedancePostProcessor_valgrind.txt @@ -0,0 +1,36 @@ +==40975== Memcheck, a memory error detector +==40975== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40975== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40975== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestImpedancePostProcessor -malloc_debug -malloc_dump -memory_info +==40975== Parent PID: 23966 +==40975== +==40975== +==40975== FILE DESCRIPTORS: 7 open (3 std) at exit. +==40975== Open file descriptor 116: +==40975== +==40975== +==40975== Open file descriptor 113: +==40975== +==40975== +==40975== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImpedancePostProcessor_valgrind.txt +==40975== +==40975== +==40975== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40975== +==40975== +==40975== +==40975== HEAP SUMMARY: +==40975== in use at exit: 24 bytes in 2 blocks +==40975== total heap usage: 5,749 allocs, 5,747 frees, 616,789 bytes allocated +==40975== +==40975== LEAK SUMMARY: +==40975== definitely lost: 0 bytes in 0 blocks +==40975== indirectly lost: 0 bytes in 0 blocks +==40975== possibly lost: 0 bytes in 0 blocks +==40975== still reachable: 24 bytes in 2 blocks +==40975== suppressed: 0 bytes in 0 blocks +==40975== Reachable blocks (those to which a pointer was found) are not shown. +==40975== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40975== +==40975== For lists of detected and suppressed errors, rerun with: -s +==40975== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-10-14_17-51-53/TestImplicitCardiacMechanicsSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestImplicitCardiacMechanicsSolver_valgrind.txt new file mode 100644 index 000000000..05e914162 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestImplicitCardiacMechanicsSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43240== Memcheck, a memory error detector +==43240== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43240== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43240== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestImplicitCardiacMechanicsSolver -malloc_debug -malloc_dump -memory_info +==43240== Parent PID: 23966 +==43240== +==43240== +==43240== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43240== Open file descriptor 12: +==43240== at 0xBF2A07D: pipe (pipe.c:29) +==43240== by 0x1433907D: ??? +==43240== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43240== by 0xC127418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43240== by 0xC0C0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43240== by 0xA4D5D38: PetscInitialize (pinit.c:924) +==43240== by 0xA3AC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43240== by 0xA3AC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43240== by 0x12D058: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43240== by 0x127F95: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43240== by 0x12ABEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43240== by 0x12AA8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43240== by 0x12B123: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43240== by 0x126275: main (TestImplicitCardiacMechanicsSolver.cpp:19) +==43240== +==43240== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43240== at 0xBF2EA1C: __open_nocancel (open64_nocancel.c:39) +==43240== by 0xBEB2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43240== by 0xB764822: ??? +==43240== by 0xB76496F: ??? +==43240== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43240== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43240== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43240== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43240== by 0xC127418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43240== by 0xC0C0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43240== by 0xA4D5D38: PetscInitialize (pinit.c:924) +==43240== by 0xA3AC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43240== by 0xA3AC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43240== by 0x12D058: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43240== by 0x127F95: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43240== by 0x12ABEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43240== by 0x12AA8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43240== by 0x12B123: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43240== by 0x126275: main (TestImplicitCardiacMechanicsSolver.cpp:19) +==43240== +==43240== Open file descriptor 116: +==43240== +==43240== +==43240== Open file descriptor 113: +==43240== +==43240== +==43240== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImplicitCardiacMechanicsSolver_valgrind.txt +==43240== +==43240== +==43240== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43240== +==43240== +==43240== +==43240== HEAP SUMMARY: +==43240== in use at exit: 618,279 bytes in 8,234 blocks +==43240== total heap usage: 1,566,163 allocs, 1,557,929 frees, 1,485,078,627 bytes allocated +==43240== +==43240== LEAK SUMMARY: +==43240== definitely lost: 0 bytes in 0 blocks +==43240== indirectly lost: 0 bytes in 0 blocks +==43240== possibly lost: 0 bytes in 0 blocks +==43240== still reachable: 24 bytes in 2 blocks +==43240== suppressed: 618,255 bytes in 8,232 blocks +==43240== Reachable blocks (those to which a pointer was found) are not shown. +==43240== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43240== +==43240== For lists of detected and suppressed errors, rerun with: -s +==43240== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestIncompressibleNonlinearElasticitySolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestIncompressibleNonlinearElasticitySolver_valgrind.txt new file mode 100644 index 000000000..e65a6d967 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestIncompressibleNonlinearElasticitySolver_valgrind.txt @@ -0,0 +1,73 @@ +==25242== Memcheck, a memory error detector +==25242== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25242== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25242== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestIncompressibleNonlinearElasticitySolver -malloc_debug -malloc_dump -memory_info +==25242== Parent PID: 23966 +==25242== +==25242== +==25242== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25242== Open file descriptor 12: +==25242== at 0x840907D: pipe (pipe.c:29) +==25242== by 0x106E707D: ??? +==25242== by 0xBF344CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25242== by 0x7C2A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25242== by 0x7BC3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25242== by 0x6897D38: PetscInitialize (pinit.c:924) +==25242== by 0x676E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25242== by 0x676E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25242== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25242== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25242== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25242== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25242== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25242== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) +==25242== +==25242== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25242== at 0x840DA1C: __open_nocancel (open64_nocancel.c:39) +==25242== by 0x8391BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25242== by 0x7B26822: ??? +==25242== by 0x7B2696F: ??? +==25242== by 0xBFD96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25242== by 0xBFD9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25242== by 0xBF8F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25242== by 0xBF342DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25242== by 0x7C2A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25242== by 0x7BC3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25242== by 0x6897D38: PetscInitialize (pinit.c:924) +==25242== by 0x676E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25242== by 0x676E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25242== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25242== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25242== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25242== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25242== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25242== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) +==25242== +==25242== Open file descriptor 116: +==25242== +==25242== +==25242== Open file descriptor 113: +==25242== +==25242== +==25242== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIncompressibleNonlinearElasticitySolver_valgrind.txt +==25242== +==25242== +==25242== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25242== +==25242== +==25242== +==25242== HEAP SUMMARY: +==25242== in use at exit: 618,215 bytes in 8,234 blocks +==25242== total heap usage: 641,870 allocs, 633,636 frees, 1,498,300,729 bytes allocated +==25242== +==25242== LEAK SUMMARY: +==25242== definitely lost: 0 bytes in 0 blocks +==25242== indirectly lost: 0 bytes in 0 blocks +==25242== possibly lost: 0 bytes in 0 blocks +==25242== still reachable: 24 bytes in 2 blocks +==25242== suppressed: 618,191 bytes in 8,232 blocks +==25242== Reachable blocks (those to which a pointer was found) are not shown. +==25242== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25242== +==25242== For lists of detected and suppressed errors, rerun with: -s +==25242== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-10-14_17-51-53/TestIonicModelsWithSacs_valgrind.txt b/log-files/2024-10-14_17-51-53/TestIonicModelsWithSacs_valgrind.txt new file mode 100644 index 000000000..3ebe3c652 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestIonicModelsWithSacs_valgrind.txt @@ -0,0 +1,73 @@ +==42408== Memcheck, a memory error detector +==42408== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42408== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42408== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestIonicModelsWithSacs -malloc_debug -malloc_dump -memory_info +==42408== Parent PID: 23966 +==42408== +==42408== +==42408== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42408== Open file descriptor 12: +==42408== at 0x9C6807D: pipe (pipe.c:29) +==42408== by 0x1433707D: ??? +==42408== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42408== by 0x989B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42408== by 0x9834D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42408== by 0x8508D38: PetscInitialize (pinit.c:924) +==42408== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42408== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42408== by 0x11A0FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42408== by 0x1145B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42408== by 0x116CB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42408== by 0x116BAD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42408== by 0x1171C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42408== by 0x112DB5: main (TestIonicModelsWithSacs.cpp:18) +==42408== +==42408== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42408== at 0x9C6CA1C: __open_nocancel (open64_nocancel.c:39) +==42408== by 0x9BF0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42408== by 0x9797822: ??? +==42408== by 0x979796F: ??? +==42408== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42408== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42408== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42408== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42408== by 0x989B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42408== by 0x9834D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42408== by 0x8508D38: PetscInitialize (pinit.c:924) +==42408== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42408== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42408== by 0x11A0FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42408== by 0x1145B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42408== by 0x116CB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42408== by 0x116BAD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42408== by 0x1171C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42408== by 0x112DB5: main (TestIonicModelsWithSacs.cpp:18) +==42408== +==42408== Open file descriptor 116: +==42408== +==42408== +==42408== Open file descriptor 113: +==42408== +==42408== +==42408== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIonicModelsWithSacs_valgrind.txt +==42408== +==42408== +==42408== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42408== +==42408== +==42408== +==42408== HEAP SUMMARY: +==42408== in use at exit: 618,350 bytes in 8,238 blocks +==42408== total heap usage: 481,199 allocs, 472,961 frees, 1,442,366,641 bytes allocated +==42408== +==42408== LEAK SUMMARY: +==42408== definitely lost: 0 bytes in 0 blocks +==42408== indirectly lost: 0 bytes in 0 blocks +==42408== possibly lost: 0 bytes in 0 blocks +==42408== still reachable: 24 bytes in 2 blocks +==42408== suppressed: 618,326 bytes in 8,236 blocks +==42408== Reachable blocks (those to which a pointer was found) are not shown. +==42408== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42408== +==42408== For lists of detected and suppressed errors, rerun with: -s +==42408== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-10-14_17-51-53/TestIonicModels_valgrind.txt b/log-files/2024-10-14_17-51-53/TestIonicModels_valgrind.txt new file mode 100644 index 000000000..c40c5ffe6 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestIonicModels_valgrind.txt @@ -0,0 +1,73 @@ +==41927== Memcheck, a memory error detector +==41927== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41927== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41927== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestIonicModels -malloc_debug -malloc_dump -memory_info +==41927== Parent PID: 23966 +==41927== +==41927== +==41927== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41927== Open file descriptor 12: +==41927== at 0x9D1D07D: pipe (pipe.c:29) +==41927== by 0x1433707D: ??? +==41927== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41927== by 0x9950418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41927== by 0x98E9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41927== by 0x85E0D38: PetscInitialize (pinit.c:924) +==41927== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41927== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41927== by 0x1365FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41927== by 0x130B0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41927== by 0x133AAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41927== by 0x13394E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41927== by 0x133FE5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41927== by 0x12BDA5: main (TestIonicModels.cpp:19) +==41927== +==41927== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41927== at 0x9D21A1C: __open_nocancel (open64_nocancel.c:39) +==41927== by 0x9CA5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41927== by 0x848C822: ??? +==41927== by 0x848C96F: ??? +==41927== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41927== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41927== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41927== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41927== by 0x9950418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41927== by 0x98E9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41927== by 0x85E0D38: PetscInitialize (pinit.c:924) +==41927== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41927== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41927== by 0x1365FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41927== by 0x130B0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41927== by 0x133AAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41927== by 0x13394E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41927== by 0x133FE5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41927== by 0x12BDA5: main (TestIonicModels.cpp:19) +==41927== +==41927== Open file descriptor 116: +==41927== +==41927== +==41927== Open file descriptor 113: +==41927== +==41927== +==41927== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIonicModels_valgrind.txt +==41927== +==41927== +==41927== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41927== +==41927== +==41927== +==41927== HEAP SUMMARY: +==41927== in use at exit: 620,059 bytes in 8,238 blocks +==41927== total heap usage: 1,892,202 allocs, 1,883,964 frees, 3,069,792,801 bytes allocated +==41927== +==41927== LEAK SUMMARY: +==41927== definitely lost: 0 bytes in 0 blocks +==41927== indirectly lost: 0 bytes in 0 blocks +==41927== possibly lost: 0 bytes in 0 blocks +==41927== still reachable: 1,804 bytes in 6 blocks +==41927== suppressed: 618,255 bytes in 8,232 blocks +==41927== Reachable blocks (those to which a pointer was found) are not shown. +==41927== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41927== +==41927== For lists of detected and suppressed errors, rerun with: -s +==41927== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestLinearBasisFunction_valgrind.txt b/log-files/2024-10-14_17-51-53/TestLinearBasisFunction_valgrind.txt new file mode 100644 index 000000000..91b47fa3a --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestLinearBasisFunction_valgrind.txt @@ -0,0 +1,73 @@ +==25178== Memcheck, a memory error detector +==25178== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25178== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25178== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearBasisFunction -malloc_debug -malloc_dump -memory_info +==25178== Parent PID: 23966 +==25178== +==25178== +==25178== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25178== Open file descriptor 12: +==25178== at 0x6CB407D: pipe (pipe.c:29) +==25178== by 0x104E607D: ??? +==25178== by 0xC3264CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25178== by 0x8728418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25178== by 0x86C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25178== by 0x7003D38: PetscInitialize (pinit.c:924) +==25178== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25178== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25178== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25178== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25178== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25178== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25178== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25178== by 0x11B875: main (TestLinearBasisFunction.cpp:18) +==25178== +==25178== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25178== at 0x6CB8A1C: __open_nocancel (open64_nocancel.c:39) +==25178== by 0x6C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25178== by 0x6936822: ??? +==25178== by 0x693696F: ??? +==25178== by 0xC3CD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25178== by 0xC3CD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25178== by 0xC383922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25178== by 0xC3262DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25178== by 0x8728418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25178== by 0x86C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25178== by 0x7003D38: PetscInitialize (pinit.c:924) +==25178== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25178== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25178== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25178== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25178== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25178== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25178== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25178== by 0x11B875: main (TestLinearBasisFunction.cpp:18) +==25178== +==25178== Open file descriptor 116: +==25178== +==25178== +==25178== Open file descriptor 113: +==25178== +==25178== +==25178== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearBasisFunction_valgrind.txt +==25178== +==25178== +==25178== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25178== +==25178== +==25178== +==25178== HEAP SUMMARY: +==25178== in use at exit: 618,270 bytes in 8,238 blocks +==25178== total heap usage: 47,357 allocs, 39,119 frees, 1,338,386,548 bytes allocated +==25178== +==25178== LEAK SUMMARY: +==25178== definitely lost: 0 bytes in 0 blocks +==25178== indirectly lost: 0 bytes in 0 blocks +==25178== possibly lost: 0 bytes in 0 blocks +==25178== still reachable: 24 bytes in 2 blocks +==25178== suppressed: 618,246 bytes in 8,236 blocks +==25178== Reachable blocks (those to which a pointer was found) are not shown. +==25178== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25178== +==25178== For lists of detected and suppressed errors, rerun with: -s +==25178== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt new file mode 100644 index 000000000..55c8575ed --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25012== Memcheck, a memory error detector +==25012== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25012== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25012== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearParabolicPdeSystemForCoupledOdeSystem -malloc_debug -malloc_dump -memory_info +==25012== Parent PID: 23966 +==25012== +==25012== +==25012== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25012== Open file descriptor 12: +==25012== at 0x7DCC07D: pipe (pipe.c:29) +==25012== by 0x100D407D: ??? +==25012== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25012== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25012== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25012== by 0x6688D38: PetscInitialize (pinit.c:924) +==25012== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25012== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25012== by 0x1173E3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25012== by 0x112E53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25012== by 0x11519C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25012== by 0x115097: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25012== by 0x1156AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25012== by 0x111655: main (TestLinearParabolicPdeSystemForCoupledOdeSystem.cpp:18) +==25012== +==25012== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25012== at 0x7DD0A1C: __open_nocancel (open64_nocancel.c:39) +==25012== by 0x7D54BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25012== by 0x7917822: ??? +==25012== by 0x791796F: ??? +==25012== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25012== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25012== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25012== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25012== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25012== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25012== by 0x6688D38: PetscInitialize (pinit.c:924) +==25012== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25012== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25012== by 0x1173E3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25012== by 0x112E53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25012== by 0x11519C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25012== by 0x115097: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25012== by 0x1156AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25012== by 0x111655: main (TestLinearParabolicPdeSystemForCoupledOdeSystem.cpp:18) +==25012== +==25012== Open file descriptor 116: +==25012== +==25012== +==25012== Open file descriptor 113: +==25012== +==25012== +==25012== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt +==25012== +==25012== +==25012== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25012== +==25012== +==25012== +==25012== HEAP SUMMARY: +==25012== in use at exit: 618,238 bytes in 8,238 blocks +==25012== total heap usage: 47,308 allocs, 39,070 frees, 1,338,381,932 bytes allocated +==25012== +==25012== LEAK SUMMARY: +==25012== definitely lost: 0 bytes in 0 blocks +==25012== indirectly lost: 0 bytes in 0 blocks +==25012== possibly lost: 0 bytes in 0 blocks +==25012== still reachable: 24 bytes in 2 blocks +==25012== suppressed: 618,214 bytes in 8,236 blocks +==25012== Reachable blocks (those to which a pointer was found) are not shown. +==25012== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25012== +==25012== For lists of detected and suppressed errors, rerun with: -s +==25012== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt new file mode 100644 index 000000000..0e1267849 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25031== Memcheck, a memory error detector +==25031== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25031== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25031== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver -malloc_debug -malloc_dump -memory_info +==25031== Parent PID: 23966 +==25031== +==25031== +==25031== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25031== Open file descriptor 12: +==25031== at 0x87BE07D: pipe (pipe.c:29) +==25031== by 0x1081507D: ??? +==25031== by 0xC6214CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25031== by 0x8DB2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25031== by 0x8D4BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25031== by 0x6D69D38: PetscInitialize (pinit.c:924) +==25031== by 0x6C401D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25031== by 0x6C40227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25031== by 0x199CB4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25031== by 0x191511: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25031== by 0x1949B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25031== by 0x194858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25031== by 0x194EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25031== by 0x18F635: main (TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver.cpp:19) +==25031== +==25031== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25031== at 0x87C2A1C: __open_nocancel (open64_nocancel.c:39) +==25031== by 0x8746BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25031== by 0x7FF8822: ??? +==25031== by 0x7FF896F: ??? +==25031== by 0xC6C66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25031== by 0xC6C6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25031== by 0xC67C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25031== by 0xC6212DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25031== by 0x8DB2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25031== by 0x8D4BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25031== by 0x6D69D38: PetscInitialize (pinit.c:924) +==25031== by 0x6C401D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25031== by 0x6C40227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25031== by 0x199CB4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25031== by 0x191511: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25031== by 0x1949B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25031== by 0x194858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25031== by 0x194EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25031== by 0x18F635: main (TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver.cpp:19) +==25031== +==25031== Open file descriptor 116: +==25031== +==25031== +==25031== Open file descriptor 113: +==25031== +==25031== +==25031== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt +==25031== +==25031== +==25031== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25031== +==25031== +==25031== +==25031== HEAP SUMMARY: +==25031== in use at exit: 620,799 bytes in 8,235 blocks +==25031== total heap usage: 2,554,389 allocs, 2,546,154 frees, 1,577,429,350 bytes allocated +==25031== +==25031== LEAK SUMMARY: +==25031== definitely lost: 0 bytes in 0 blocks +==25031== indirectly lost: 0 bytes in 0 blocks +==25031== possibly lost: 0 bytes in 0 blocks +==25031== still reachable: 2,576 bytes in 3 blocks +==25031== suppressed: 618,223 bytes in 8,232 blocks +==25031== Reachable blocks (those to which a pointer was found) are not shown. +==25031== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25031== +==25031== For lists of detected and suppressed errors, rerun with: -s +==25031== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-10-14_17-51-53/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt b/log-files/2024-10-14_17-51-53/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt new file mode 100644 index 000000000..96b1852ad --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt @@ -0,0 +1,73 @@ +==40338== Memcheck, a memory error detector +==40338== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40338== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40338== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestLinearSpringWithVariableSpringConstantsForce -malloc_debug -malloc_dump -memory_info +==40338== Parent PID: 23966 +==40338== +==40338== +==40338== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40338== Open file descriptor 12: +==40338== at 0x111EC07D: pipe (pipe.c:29) +==40338== by 0x1B37D07D: ??? +==40338== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40338== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40338== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40338== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40338== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40338== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40338== by 0x165A7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40338== by 0x15DE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40338== by 0x160FB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40338== by 0x160E58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40338== by 0x1614EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40338== by 0x15C295: main (TestLinearSpringWithVariableSpringConstantsForce.cpp:19) +==40338== +==40338== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40338== at 0x111F0A1C: __open_nocancel (open64_nocancel.c:39) +==40338== by 0x11174BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40338== by 0x109FE822: ??? +==40338== by 0x109FE96F: ??? +==40338== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40338== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40338== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40338== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40338== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40338== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40338== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40338== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40338== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40338== by 0x165A7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40338== by 0x15DE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40338== by 0x160FB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40338== by 0x160E58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40338== by 0x1614EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40338== by 0x15C295: main (TestLinearSpringWithVariableSpringConstantsForce.cpp:19) +==40338== +==40338== Open file descriptor 116: +==40338== +==40338== +==40338== Open file descriptor 113: +==40338== +==40338== +==40338== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt +==40338== +==40338== +==40338== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40338== +==40338== +==40338== +==40338== HEAP SUMMARY: +==40338== in use at exit: 618,382 bytes in 8,239 blocks +==40338== total heap usage: 558,474 allocs, 550,235 frees, 1,383,921,697 bytes allocated +==40338== +==40338== LEAK SUMMARY: +==40338== definitely lost: 0 bytes in 0 blocks +==40338== indirectly lost: 0 bytes in 0 blocks +==40338== possibly lost: 0 bytes in 0 blocks +==40338== still reachable: 56 bytes in 3 blocks +==40338== suppressed: 618,326 bytes in 8,236 blocks +==40338== Reachable blocks (those to which a pointer was found) are not shown. +==40338== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40338== +==40338== For lists of detected and suppressed errors, rerun with: -s +==40338== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestLinearSystem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestLinearSystem_valgrind.txt new file mode 100644 index 000000000..12ad50984 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestLinearSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24278== Memcheck, a memory error detector +==24278== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24278== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24278== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestLinearSystem -malloc_debug -malloc_dump -memory_info +==24278== Parent PID: 23966 +==24278== +==24278== +==24278== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24278== Open file descriptor 12: +==24278== at 0x610307D: pipe (pipe.c:29) +==24278== by 0xAF4107D: ??? +==24278== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24278== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24278== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24278== by 0x4B19D38: PetscInitialize (pinit.c:924) +==24278== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24278== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24278== by 0x135370: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24278== by 0x12FAC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24278== by 0x132BF0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24278== by 0x132A90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24278== by 0x133127: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24278== by 0x12DEE5: main (TestLinearSystem.cpp:19) +==24278== +==24278== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24278== at 0x6107A1C: __open_nocancel (open64_nocancel.c:39) +==24278== by 0x608BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24278== by 0x49C3822: ??? +==24278== by 0x49C396F: ??? +==24278== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24278== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24278== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24278== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24278== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24278== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24278== by 0x4B19D38: PetscInitialize (pinit.c:924) +==24278== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24278== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24278== by 0x135370: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24278== by 0x12FAC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24278== by 0x132BF0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24278== by 0x132A90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24278== by 0x133127: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24278== by 0x12DEE5: main (TestLinearSystem.cpp:19) +==24278== +==24278== Open file descriptor 116: +==24278== +==24278== +==24278== Open file descriptor 113: +==24278== +==24278== +==24278== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearSystem_valgrind.txt +==24278== +==24278== +==24278== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24278== +==24278== +==24278== +==24278== HEAP SUMMARY: +==24278== in use at exit: 617,902 bytes in 8,239 blocks +==24278== total heap usage: 59,954 allocs, 51,715 frees, 1,374,857,403 bytes allocated +==24278== +==24278== LEAK SUMMARY: +==24278== definitely lost: 0 bytes in 0 blocks +==24278== indirectly lost: 0 bytes in 0 blocks +==24278== possibly lost: 0 bytes in 0 blocks +==24278== still reachable: 40 bytes in 3 blocks +==24278== suppressed: 617,862 bytes in 8,236 blocks +==24278== Reachable blocks (those to which a pointer was found) are not shown. +==24278== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24278== +==24278== For lists of detected and suppressed errors, rerun with: -s +==24278== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestLobePropertiesCalculator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestLobePropertiesCalculator_valgrind.txt new file mode 100644 index 000000000..af1a3fd1d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestLobePropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==41011== Memcheck, a memory error detector +==41011== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41011== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41011== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestLobePropertiesCalculator -malloc_debug -malloc_dump -memory_info +==41011== Parent PID: 23966 +==41011== +==41011== +==41011== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41011== Open file descriptor 116: +==41011== +==41011== +==41011== Open file descriptor 113: +==41011== +==41011== +==41011== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLobePropertiesCalculator_valgrind.txt +==41011== +==41011== +==41011== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41011== +==41011== +==41011== +==41011== HEAP SUMMARY: +==41011== in use at exit: 24 bytes in 2 blocks +==41011== total heap usage: 134,423 allocs, 134,421 frees, 48,976,300 bytes allocated +==41011== +==41011== LEAK SUMMARY: +==41011== definitely lost: 0 bytes in 0 blocks +==41011== indirectly lost: 0 bytes in 0 blocks +==41011== possibly lost: 0 bytes in 0 blocks +==41011== still reachable: 24 bytes in 2 blocks +==41011== suppressed: 0 bytes in 0 blocks +==41011== Reachable blocks (those to which a pointer was found) are not shown. +==41011== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41011== +==41011== For lists of detected and suppressed errors, rerun with: -s +==41011== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-10-14_17-51-53/TestLogFile_valgrind.txt b/log-files/2024-10-14_17-51-53/TestLogFile_valgrind.txt new file mode 100644 index 000000000..2dc795d81 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestLogFile_valgrind.txt @@ -0,0 +1,73 @@ +==24090== Memcheck, a memory error detector +==24090== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24090== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24090== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestLogFile -malloc_debug -malloc_dump -memory_info +==24090== Parent PID: 23966 +==24090== +==24090== +==24090== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24090== Open file descriptor 12: +==24090== at 0x616907D: pipe (pipe.c:29) +==24090== by 0xAEAD07D: ??? +==24090== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24090== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24090== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24090== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24090== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24090== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24090== by 0x11A18F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24090== by 0x11398D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24090== by 0x116442: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24090== by 0x1162E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24090== by 0x116979: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24090== by 0x111DB5: main (TestLogFile.cpp:19) +==24090== +==24090== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24090== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24090== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24090== by 0x5CB2822: ??? +==24090== by 0x5CB296F: ??? +==24090== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24090== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24090== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24090== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24090== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24090== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24090== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24090== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24090== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24090== by 0x11A18F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24090== by 0x11398D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24090== by 0x116442: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24090== by 0x1162E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24090== by 0x116979: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24090== by 0x111DB5: main (TestLogFile.cpp:19) +==24090== +==24090== Open file descriptor 116: +==24090== +==24090== +==24090== Open file descriptor 113: +==24090== +==24090== +==24090== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLogFile_valgrind.txt +==24090== +==24090== +==24090== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24090== +==24090== +==24090== +==24090== HEAP SUMMARY: +==24090== in use at exit: 617,870 bytes in 8,238 blocks +==24090== total heap usage: 45,249 allocs, 37,011 frees, 1,338,411,292 bytes allocated +==24090== +==24090== LEAK SUMMARY: +==24090== definitely lost: 0 bytes in 0 blocks +==24090== indirectly lost: 0 bytes in 0 blocks +==24090== possibly lost: 0 bytes in 0 blocks +==24090== still reachable: 24 bytes in 2 blocks +==24090== suppressed: 617,846 bytes in 8,236 blocks +==24090== Reachable blocks (those to which a pointer was found) are not shown. +==24090== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24090== +==24090== For lists of detected and suppressed errors, rerun with: -s +==24090== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestMajorAirwaysCentreLinesCleaner_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMajorAirwaysCentreLinesCleaner_valgrind.txt new file mode 100644 index 000000000..004034e00 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMajorAirwaysCentreLinesCleaner_valgrind.txt @@ -0,0 +1,73 @@ +==41032== Memcheck, a memory error detector +==41032== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41032== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41032== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMajorAirwaysCentreLinesCleaner -malloc_debug -malloc_dump -memory_info +==41032== Parent PID: 23966 +==41032== +==41032== +==41032== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41032== Open file descriptor 12: +==41032== at 0x823107D: pipe (pipe.c:29) +==41032== by 0x107B407D: ??? +==41032== by 0xBFD34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41032== by 0x7B39418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41032== by 0x7AD2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41032== by 0x67A6D38: PetscInitialize (pinit.c:924) +==41032== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41032== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41032== by 0x11675D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41032== by 0x1121F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41032== by 0x1146F0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41032== by 0x1145EB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41032== by 0x114BFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41032== by 0x1109F5: main (TestMajorAirwaysCentreLinesCleaner.cpp:18) +==41032== +==41032== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41032== at 0x8235A1C: __open_nocancel (open64_nocancel.c:39) +==41032== by 0x81B9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41032== by 0x7A35822: ??? +==41032== by 0x7A3596F: ??? +==41032== by 0xC0786DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41032== by 0xC078938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41032== by 0xC02E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41032== by 0xBFD32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41032== by 0x7B39418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41032== by 0x7AD2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41032== by 0x67A6D38: PetscInitialize (pinit.c:924) +==41032== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41032== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41032== by 0x11675D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41032== by 0x1121F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41032== by 0x1146F0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41032== by 0x1145EB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41032== by 0x114BFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41032== by 0x1109F5: main (TestMajorAirwaysCentreLinesCleaner.cpp:18) +==41032== +==41032== Open file descriptor 116: +==41032== +==41032== +==41032== Open file descriptor 113: +==41032== +==41032== +==41032== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMajorAirwaysCentreLinesCleaner_valgrind.txt +==41032== +==41032== +==41032== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41032== +==41032== +==41032== +==41032== HEAP SUMMARY: +==41032== in use at exit: 618,334 bytes in 8,238 blocks +==41032== total heap usage: 493,347 allocs, 485,109 frees, 1,357,249,592 bytes allocated +==41032== +==41032== LEAK SUMMARY: +==41032== definitely lost: 0 bytes in 0 blocks +==41032== indirectly lost: 0 bytes in 0 blocks +==41032== possibly lost: 0 bytes in 0 blocks +==41032== still reachable: 24 bytes in 2 blocks +==41032== suppressed: 618,310 bytes in 8,236 blocks +==41032== Reachable blocks (those to which a pointer was found) are not shown. +==41032== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41032== +==41032== For lists of detected and suppressed errors, rerun with: -s +==41032== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestMaterialLaws_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMaterialLaws_valgrind.txt new file mode 100644 index 000000000..e77d13b99 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMaterialLaws_valgrind.txt @@ -0,0 +1,73 @@ +==25243== Memcheck, a memory error detector +==25243== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25243== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25243== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMaterialLaws -malloc_debug -malloc_dump -memory_info +==25243== Parent PID: 23966 +==25243== +==25243== +==25243== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25243== Open file descriptor 12: +==25243== at 0x4F1B07D: pipe (pipe.c:29) +==25243== by 0x106E907D: ??? +==25243== by 0xBFE74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25243== by 0x88AE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25243== by 0x8847D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25243== by 0x71B5D38: PetscInitialize (pinit.c:924) +==25243== by 0x4A7A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25243== by 0x4A7A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25243== by 0x12ADEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25243== by 0x125E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25243== by 0x128AB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25243== by 0x128952: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25243== by 0x128FE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25243== by 0x124255: main (TestMaterialLaws.cpp:19) +==25243== +==25243== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25243== at 0x4F1FA1C: __open_nocancel (open64_nocancel.c:39) +==25243== by 0x4EA3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25243== by 0x4AB4822: ??? +==25243== by 0x4AB496F: ??? +==25243== by 0xC08C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25243== by 0xC08C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25243== by 0xC042922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25243== by 0xBFE72DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25243== by 0x88AE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25243== by 0x8847D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25243== by 0x71B5D38: PetscInitialize (pinit.c:924) +==25243== by 0x4A7A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25243== by 0x4A7A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25243== by 0x12ADEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25243== by 0x125E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25243== by 0x128AB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25243== by 0x128952: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25243== by 0x128FE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25243== by 0x124255: main (TestMaterialLaws.cpp:19) +==25243== +==25243== Open file descriptor 116: +==25243== +==25243== +==25243== Open file descriptor 113: +==25243== +==25243== +==25243== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMaterialLaws_valgrind.txt +==25243== +==25243== +==25243== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25243== +==25243== +==25243== +==25243== HEAP SUMMARY: +==25243== in use at exit: 618,286 bytes in 8,238 blocks +==25243== total heap usage: 47,753 allocs, 39,515 frees, 1,338,429,302 bytes allocated +==25243== +==25243== LEAK SUMMARY: +==25243== definitely lost: 0 bytes in 0 blocks +==25243== indirectly lost: 0 bytes in 0 blocks +==25243== possibly lost: 0 bytes in 0 blocks +==25243== still reachable: 24 bytes in 2 blocks +==25243== suppressed: 618,262 bytes in 8,236 blocks +==25243== Reachable blocks (those to which a pointer was found) are not shown. +==25243== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25243== +==25243== For lists of detected and suppressed errors, rerun with: -s +==25243== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestMathsCustomFunctions_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMathsCustomFunctions_valgrind.txt new file mode 100644 index 000000000..524afd7cf --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMathsCustomFunctions_valgrind.txt @@ -0,0 +1,73 @@ +==24115== Memcheck, a memory error detector +==24115== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24115== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24115== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestMathsCustomFunctions -malloc_debug -malloc_dump -memory_info +==24115== Parent PID: 23966 +==24115== +==24115== +==24115== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24115== Open file descriptor 12: +==24115== at 0x4D9B07D: pipe (pipe.c:29) +==24115== by 0xAEAD07D: ??? +==24115== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24115== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24115== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24115== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24115== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24115== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24115== by 0x112348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24115== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24115== by 0x110412: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24115== by 0x11030D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24115== by 0x110921: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24115== by 0x10C555: main (TestMathsCustomFunctions.cpp:18) +==24115== +==24115== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24115== at 0x4D9FA1C: __open_nocancel (open64_nocancel.c:39) +==24115== by 0x4D23BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24115== by 0x4934822: ??? +==24115== by 0x493496F: ??? +==24115== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24115== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24115== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24115== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24115== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24115== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24115== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24115== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24115== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24115== by 0x112348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24115== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24115== by 0x110412: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24115== by 0x11030D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24115== by 0x110921: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24115== by 0x10C555: main (TestMathsCustomFunctions.cpp:18) +==24115== +==24115== Open file descriptor 116: +==24115== +==24115== +==24115== Open file descriptor 113: +==24115== +==24115== +==24115== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMathsCustomFunctions_valgrind.txt +==24115== +==24115== +==24115== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24115== +==24115== +==24115== +==24115== HEAP SUMMARY: +==24115== in use at exit: 617,870 bytes in 8,238 blocks +==24115== total heap usage: 44,913 allocs, 36,675 frees, 1,338,160,388 bytes allocated +==24115== +==24115== LEAK SUMMARY: +==24115== definitely lost: 0 bytes in 0 blocks +==24115== indirectly lost: 0 bytes in 0 blocks +==24115== possibly lost: 0 bytes in 0 blocks +==24115== still reachable: 24 bytes in 2 blocks +==24115== suppressed: 617,846 bytes in 8,236 blocks +==24115== Reachable blocks (those to which a pointer was found) are not shown. +==24115== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24115== +==24115== For lists of detected and suppressed errors, rerun with: -s +==24115== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestMatrixVentilationProblem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMatrixVentilationProblem_valgrind.txt new file mode 100644 index 000000000..4e80ab4f8 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMatrixVentilationProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41066== Memcheck, a memory error detector +==41066== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41066== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41066== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMatrixVentilationProblem -malloc_debug -malloc_dump -memory_info +==41066== Parent PID: 23966 +==41066== +==41066== +==41066== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41066== Open file descriptor 12: +==41066== at 0x81E107D: pipe (pipe.c:29) +==41066== by 0x107B407D: ??? +==41066== by 0xC0204CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41066== by 0x83DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41066== by 0x8375D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41066== by 0x67A6D38: PetscInitialize (pinit.c:924) +==41066== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41066== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41066== by 0x117742: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41066== by 0x1128B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41066== by 0x1155E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41066== by 0x115486: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41066== by 0x115B1D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41066== by 0x110B35: main (TestMatrixVentilationProblem.cpp:19) +==41066== +==41066== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41066== at 0x81E5A1C: __open_nocancel (open64_nocancel.c:39) +==41066== by 0x8169BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41066== by 0x7A35822: ??? +==41066== by 0x7A3596F: ??? +==41066== by 0xC0C56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41066== by 0xC0C5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41066== by 0xC07B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41066== by 0xC0202DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41066== by 0x83DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41066== by 0x8375D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41066== by 0x67A6D38: PetscInitialize (pinit.c:924) +==41066== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41066== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41066== by 0x117742: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41066== by 0x1128B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41066== by 0x1155E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41066== by 0x115486: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41066== by 0x115B1D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41066== by 0x110B35: main (TestMatrixVentilationProblem.cpp:19) +==41066== +==41066== Open file descriptor 116: +==41066== +==41066== +==41066== Open file descriptor 113: +==41066== +==41066== +==41066== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMatrixVentilationProblem_valgrind.txt +==41066== +==41066== +==41066== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41066== +==41066== +==41066== +==41066== HEAP SUMMARY: +==41066== in use at exit: 618,334 bytes in 8,238 blocks +==41066== total heap usage: 137,450 allocs, 129,212 frees, 1,515,201,299 bytes allocated +==41066== +==41066== LEAK SUMMARY: +==41066== definitely lost: 0 bytes in 0 blocks +==41066== indirectly lost: 0 bytes in 0 blocks +==41066== possibly lost: 0 bytes in 0 blocks +==41066== still reachable: 24 bytes in 2 blocks +==41066== suppressed: 618,310 bytes in 8,236 blocks +==41066== Reachable blocks (those to which a pointer was found) are not shown. +==41066== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41066== +==41066== For lists of detected and suppressed errors, rerun with: -s +==41066== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestMemfemMeshReader_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMemfemMeshReader_valgrind.txt new file mode 100644 index 000000000..a3f292d44 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMemfemMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24608== Memcheck, a memory error detector +==24608== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24608== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24608== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMemfemMeshReader -malloc_debug -malloc_dump -memory_info +==24608== Parent PID: 23966 +==24608== +==24608== +==24608== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24608== Open file descriptor 12: +==24608== at 0x6C5C07D: pipe (pipe.c:29) +==24608== by 0x100D407D: ??? +==24608== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24608== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24608== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24608== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24608== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24608== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24608== by 0x118FB6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24608== by 0x11470D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24608== by 0x116FF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24608== by 0x116E98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24608== by 0x11752F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24608== by 0x112B35: main (TestMemfemMeshReader.cpp:19) +==24608== +==24608== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24608== at 0x6C60A1C: __open_nocancel (open64_nocancel.c:39) +==24608== by 0x6BE4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24608== by 0x6597822: ??? +==24608== by 0x659796F: ??? +==24608== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24608== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24608== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24608== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24608== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24608== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24608== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24608== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24608== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24608== by 0x118FB6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24608== by 0x11470D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24608== by 0x116FF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24608== by 0x116E98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24608== by 0x11752F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24608== by 0x112B35: main (TestMemfemMeshReader.cpp:19) +==24608== +==24608== Open file descriptor 116: +==24608== +==24608== +==24608== Open file descriptor 113: +==24608== +==24608== +==24608== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMemfemMeshReader_valgrind.txt +==24608== +==24608== +==24608== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24608== +==24608== +==24608== +==24608== HEAP SUMMARY: +==24608== in use at exit: 618,238 bytes in 8,238 blocks +==24608== total heap usage: 87,584 allocs, 79,346 frees, 1,340,444,805 bytes allocated +==24608== +==24608== LEAK SUMMARY: +==24608== definitely lost: 0 bytes in 0 blocks +==24608== indirectly lost: 0 bytes in 0 blocks +==24608== possibly lost: 0 bytes in 0 blocks +==24608== still reachable: 24 bytes in 2 blocks +==24608== suppressed: 618,214 bytes in 8,236 blocks +==24608== Reachable blocks (those to which a pointer was found) are not shown. +==24608== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24608== +==24608== For lists of detected and suppressed errors, rerun with: -s +==24608== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-10-14_17-51-53/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt new file mode 100644 index 000000000..58abf3c7a --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt @@ -0,0 +1,73 @@ +==26038== Memcheck, a memory error detector +==26038== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26038== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26038== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMeshBasedCellPopulationWithGhostNodes -malloc_debug -malloc_dump -memory_info +==26038== Parent PID: 23966 +==26038== +==26038== +==26038== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26038== Open file descriptor 12: +==26038== at 0x10D9F07D: pipe (pipe.c:29) +==26038== by 0x196BC07D: ??? +==26038== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26038== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26038== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26038== by 0xF22DD38: PetscInitialize (pinit.c:924) +==26038== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26038== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26038== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26038== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26038== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26038== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26038== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26038== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) +==26038== +==26038== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26038== at 0x10DA3A1C: __open_nocancel (open64_nocancel.c:39) +==26038== by 0x10D27BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26038== by 0x104BC822: ??? +==26038== by 0x104BC96F: ??? +==26038== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26038== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26038== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26038== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26038== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26038== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26038== by 0xF22DD38: PetscInitialize (pinit.c:924) +==26038== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26038== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26038== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26038== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26038== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26038== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26038== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26038== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) +==26038== +==26038== Open file descriptor 116: +==26038== +==26038== +==26038== Open file descriptor 113: +==26038== +==26038== +==26038== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt +==26038== +==26038== +==26038== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26038== +==26038== +==26038== +==26038== HEAP SUMMARY: +==26038== in use at exit: 618,366 bytes in 8,239 blocks +==26038== total heap usage: 224,634 allocs, 216,395 frees, 1,363,724,988 bytes allocated +==26038== +==26038== LEAK SUMMARY: +==26038== definitely lost: 0 bytes in 0 blocks +==26038== indirectly lost: 0 bytes in 0 blocks +==26038== possibly lost: 0 bytes in 0 blocks +==26038== still reachable: 56 bytes in 3 blocks +==26038== suppressed: 618,310 bytes in 8,236 blocks +==26038== Reachable blocks (those to which a pointer was found) are not shown. +==26038== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26038== +==26038== For lists of detected and suppressed errors, rerun with: -s +==26038== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestMeshBasedCellPopulation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMeshBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..ce062fb2d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMeshBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26037== Memcheck, a memory error detector +==26037== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26037== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26037== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26037== Parent PID: 23966 +==26037== +==26037== +==26037== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26037== Open file descriptor 12: +==26037== at 0xF92C07D: pipe (pipe.c:29) +==26037== by 0x196BC07D: ??? +==26037== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26037== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26037== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26037== by 0x10218D38: PetscInitialize (pinit.c:924) +==26037== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26037== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26037== by 0x2EFB7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26037== by 0x2E6539: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26037== by 0x2EAE3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26037== by 0x2EACDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26037== by 0x2EB375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26037== by 0x2E4955: main (TestMeshBasedCellPopulation.cpp:19) +==26037== +==26037== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26037== at 0xF930A1C: __open_nocancel (open64_nocancel.c:39) +==26037== by 0xF8B4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26037== by 0xF13E822: ??? +==26037== by 0xF13E96F: ??? +==26037== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26037== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26037== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26037== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26037== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26037== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26037== by 0x10218D38: PetscInitialize (pinit.c:924) +==26037== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26037== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26037== by 0x2EFB7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26037== by 0x2E6539: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26037== by 0x2EAE3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26037== by 0x2EACDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26037== by 0x2EB375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26037== by 0x2E4955: main (TestMeshBasedCellPopulation.cpp:19) +==26037== +==26037== Open file descriptor 116: +==26037== +==26037== +==26037== Open file descriptor 113: +==26037== +==26037== +==26037== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshBasedCellPopulation_valgrind.txt +==26037== +==26037== +==26037== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26037== +==26037== +==26037== +==26037== HEAP SUMMARY: +==26037== in use at exit: 618,366 bytes in 8,239 blocks +==26037== total heap usage: 145,392 allocs, 137,153 frees, 1,366,616,420 bytes allocated +==26037== +==26037== LEAK SUMMARY: +==26037== definitely lost: 0 bytes in 0 blocks +==26037== indirectly lost: 0 bytes in 0 blocks +==26037== possibly lost: 0 bytes in 0 blocks +==26037== still reachable: 56 bytes in 3 blocks +==26037== suppressed: 618,310 bytes in 8,236 blocks +==26037== Reachable blocks (those to which a pointer was found) are not shown. +==26037== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26037== +==26037== For lists of detected and suppressed errors, rerun with: -s +==26037== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestMeshUtilityFunctions_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMeshUtilityFunctions_valgrind.txt new file mode 100644 index 000000000..d9d6f2089 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMeshUtilityFunctions_valgrind.txt @@ -0,0 +1,73 @@ +==24646== Memcheck, a memory error detector +==24646== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24646== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24646== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMeshUtilityFunctions -malloc_debug -malloc_dump -memory_info +==24646== Parent PID: 23966 +==24646== +==24646== +==24646== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24646== Open file descriptor 12: +==24646== at 0x69A607D: pipe (pipe.c:29) +==24646== by 0x100D407D: ??? +==24646== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24646== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24646== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24646== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24646== by 0x65EC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24646== by 0x65EC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24646== by 0x11E530: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24646== by 0x119E33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24646== by 0x11C2F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24646== by 0x11C1F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24646== by 0x11C805: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24646== by 0x118635: main (TestMeshUtilityFunctions.cpp:18) +==24646== +==24646== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24646== at 0x69AAA1C: __open_nocancel (open64_nocancel.c:39) +==24646== by 0x692EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24646== by 0x6626822: ??? +==24646== by 0x662696F: ??? +==24646== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24646== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24646== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24646== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24646== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24646== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24646== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24646== by 0x65EC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24646== by 0x65EC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24646== by 0x11E530: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24646== by 0x119E33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24646== by 0x11C2F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24646== by 0x11C1F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24646== by 0x11C805: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24646== by 0x118635: main (TestMeshUtilityFunctions.cpp:18) +==24646== +==24646== Open file descriptor 116: +==24646== +==24646== +==24646== Open file descriptor 113: +==24646== +==24646== +==24646== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshUtilityFunctions_valgrind.txt +==24646== +==24646== +==24646== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24646== +==24646== +==24646== +==24646== HEAP SUMMARY: +==24646== in use at exit: 620,790 bytes in 8,239 blocks +==24646== total heap usage: 47,349 allocs, 39,110 frees, 1,338,386,853 bytes allocated +==24646== +==24646== LEAK SUMMARY: +==24646== definitely lost: 0 bytes in 0 blocks +==24646== indirectly lost: 0 bytes in 0 blocks +==24646== possibly lost: 0 bytes in 0 blocks +==24646== still reachable: 2,576 bytes in 3 blocks +==24646== suppressed: 618,214 bytes in 8,236 blocks +==24646== Reachable blocks (those to which a pointer was found) are not shown. +==24646== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24646== +==24646== For lists of detected and suppressed errors, rerun with: -s +==24646== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestMeshWriters_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMeshWriters_valgrind.txt new file mode 100644 index 000000000..003710935 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMeshWriters_valgrind.txt @@ -0,0 +1,73 @@ +==24770== Memcheck, a memory error detector +==24770== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24770== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24770== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMeshWriters -malloc_debug -malloc_dump -memory_info +==24770== Parent PID: 23966 +==24770== +==24770== +==24770== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24770== Open file descriptor 12: +==24770== at 0x81F807D: pipe (pipe.c:29) +==24770== by 0x100D407D: ??? +==24770== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24770== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24770== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24770== by 0x6686D38: PetscInitialize (pinit.c:924) +==24770== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24770== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24770== by 0x1482F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24770== by 0x140E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24770== by 0x143F06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24770== by 0x143DA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24770== by 0x14443D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24770== by 0x13F235: main (TestMeshWriters.cpp:19) +==24770== +==24770== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24770== at 0x81FCA1C: __open_nocancel (open64_nocancel.c:39) +==24770== by 0x8180BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24770== by 0x7915822: ??? +==24770== by 0x791596F: ??? +==24770== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24770== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24770== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24770== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24770== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24770== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24770== by 0x6686D38: PetscInitialize (pinit.c:924) +==24770== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24770== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24770== by 0x1482F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24770== by 0x140E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24770== by 0x143F06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24770== by 0x143DA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24770== by 0x14443D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24770== by 0x13F235: main (TestMeshWriters.cpp:19) +==24770== +==24770== Open file descriptor 116: +==24770== +==24770== +==24770== Open file descriptor 113: +==24770== +==24770== +==24770== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshWriters_valgrind.txt +==24770== +==24770== +==24770== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24770== +==24770== +==24770== +==24770== HEAP SUMMARY: +==24770== in use at exit: 618,238 bytes in 8,238 blocks +==24770== total heap usage: 187,276 allocs, 179,038 frees, 1,352,175,311 bytes allocated +==24770== +==24770== LEAK SUMMARY: +==24770== definitely lost: 0 bytes in 0 blocks +==24770== indirectly lost: 0 bytes in 0 blocks +==24770== possibly lost: 0 bytes in 0 blocks +==24770== still reachable: 24 bytes in 2 blocks +==24770== suppressed: 618,214 bytes in 8,236 blocks +==24770== Reachable blocks (those to which a pointer was found) are not shown. +==24770== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24770== +==24770== For lists of detected and suppressed errors, rerun with: -s +==24770== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestMirams2010WntOdeSystem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMirams2010WntOdeSystem_valgrind.txt new file mode 100644 index 000000000..0be0ccb28 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMirams2010WntOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==40382== Memcheck, a memory error detector +==40382== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40382== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40382== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestMirams2010WntOdeSystem -malloc_debug -malloc_dump -memory_info +==40382== Parent PID: 23966 +==40382== +==40382== +==40382== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40382== Open file descriptor 12: +==40382== at 0xF39D07D: pipe (pipe.c:29) +==40382== by 0x1B37E07D: ??? +==40382== by 0x165814CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40382== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40382== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40382== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40382== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40382== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40382== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40382== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40382== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40382== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40382== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40382== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) +==40382== +==40382== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40382== at 0xF3A1A1C: __open_nocancel (open64_nocancel.c:39) +==40382== by 0xF325BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40382== by 0xEFDD822: ??? +==40382== by 0xEFDD96F: ??? +==40382== by 0x166266DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40382== by 0x16626938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40382== by 0x165DC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40382== by 0x165812DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40382== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40382== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40382== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40382== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40382== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40382== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40382== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40382== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40382== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40382== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40382== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) +==40382== +==40382== Open file descriptor 116: +==40382== +==40382== +==40382== Open file descriptor 113: +==40382== +==40382== +==40382== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMirams2010WntOdeSystem_valgrind.txt +==40382== +==40382== +==40382== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40382== +==40382== +==40382== +==40382== HEAP SUMMARY: +==40382== in use at exit: 618,382 bytes in 8,239 blocks +==40382== total heap usage: 66,832 allocs, 58,593 frees, 1,340,372,803 bytes allocated +==40382== +==40382== LEAK SUMMARY: +==40382== definitely lost: 0 bytes in 0 blocks +==40382== indirectly lost: 0 bytes in 0 blocks +==40382== possibly lost: 0 bytes in 0 blocks +==40382== still reachable: 56 bytes in 3 blocks +==40382== suppressed: 618,326 bytes in 8,236 blocks +==40382== Reachable blocks (those to which a pointer was found) are not shown. +==40382== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40382== +==40382== For lists of detected and suppressed errors, rerun with: -s +==40382== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestMixedDimensionMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMixedDimensionMesh_valgrind.txt new file mode 100644 index 000000000..4e22cbd36 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMixedDimensionMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24378== Memcheck, a memory error detector +==24378== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24378== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24378== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMixedDimensionMesh -malloc_debug -malloc_dump -memory_info +==24378== Parent PID: 23966 +==24378== +==24378== +==24378== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24378== Open file descriptor 12: +==24378== at 0x815307D: pipe (pipe.c:29) +==24378== by 0x100D407D: ??? +==24378== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24378== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24378== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24378== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24378== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24378== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24378== by 0x125042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24378== by 0x11E27D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24378== by 0x121016: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24378== by 0x120EB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24378== by 0x12154D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24378== by 0x11C6A5: main (TestMixedDimensionMesh.cpp:19) +==24378== +==24378== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24378== at 0x8157A1C: __open_nocancel (open64_nocancel.c:39) +==24378== by 0x80DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24378== by 0x6597822: ??? +==24378== by 0x659796F: ??? +==24378== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24378== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24378== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24378== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24378== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24378== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24378== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24378== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24378== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24378== by 0x125042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24378== by 0x11E27D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24378== by 0x121016: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24378== by 0x120EB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24378== by 0x12154D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24378== by 0x11C6A5: main (TestMixedDimensionMesh.cpp:19) +==24378== +==24378== Open file descriptor 116: +==24378== +==24378== +==24378== Open file descriptor 113: +==24378== +==24378== +==24378== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMixedDimensionMesh_valgrind.txt +==24378== +==24378== +==24378== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24378== +==24378== +==24378== +==24378== HEAP SUMMARY: +==24378== in use at exit: 618,238 bytes in 8,238 blocks +==24378== total heap usage: 121,797 allocs, 113,559 frees, 1,343,655,042 bytes allocated +==24378== +==24378== LEAK SUMMARY: +==24378== definitely lost: 0 bytes in 0 blocks +==24378== indirectly lost: 0 bytes in 0 blocks +==24378== possibly lost: 0 bytes in 0 blocks +==24378== still reachable: 24 bytes in 2 blocks +==24378== suppressed: 618,214 bytes in 8,236 blocks +==24378== Reachable blocks (those to which a pointer was found) are not shown. +==24378== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24378== +==24378== For lists of detected and suppressed errors, rerun with: -s +==24378== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestMockEulerIvpOdeSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMockEulerIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..d1028efb8 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMockEulerIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24945== Memcheck, a memory error detector +==24945== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24945== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24945== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestMockEulerIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24945== Parent PID: 23966 +==24945== +==24945== +==24945== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24945== Open file descriptor 12: +==24945== at 0x4F5207D: pipe (pipe.c:29) +==24945== by 0xB1EE07D: ??? +==24945== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24945== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24945== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24945== by 0x5308D38: PetscInitialize (pinit.c:924) +==24945== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24945== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24945== by 0x123542: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24945== by 0x11E7E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24945== by 0x120D60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24945== by 0x120C5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24945== by 0x12126F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24945== by 0x11CE65: main (TestMockEulerIvpOdeSolver.cpp:18) +==24945== +==24945== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24945== at 0x4F56A1C: __open_nocancel (open64_nocancel.c:39) +==24945== by 0x4EDABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24945== by 0x4B76822: ??? +==24945== by 0x4B7696F: ??? +==24945== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24945== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24945== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24945== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24945== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24945== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24945== by 0x5308D38: PetscInitialize (pinit.c:924) +==24945== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24945== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24945== by 0x123542: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24945== by 0x11E7E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24945== by 0x120D60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24945== by 0x120C5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24945== by 0x12126F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24945== by 0x11CE65: main (TestMockEulerIvpOdeSolver.cpp:18) +==24945== +==24945== Open file descriptor 116: +==24945== +==24945== +==24945== Open file descriptor 113: +==24945== +==24945== +==24945== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMockEulerIvpOdeSolver_valgrind.txt +==24945== +==24945== +==24945== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24945== +==24945== +==24945== +==24945== HEAP SUMMARY: +==24945== in use at exit: 617,934 bytes in 8,238 blocks +==24945== total heap usage: 45,126 allocs, 36,888 frees, 1,338,195,009 bytes allocated +==24945== +==24945== LEAK SUMMARY: +==24945== definitely lost: 0 bytes in 0 blocks +==24945== indirectly lost: 0 bytes in 0 blocks +==24945== possibly lost: 0 bytes in 0 blocks +==24945== still reachable: 24 bytes in 2 blocks +==24945== suppressed: 617,910 bytes in 8,236 blocks +==24945== Reachable blocks (those to which a pointer was found) are not shown. +==24945== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24945== +==24945== For lists of detected and suppressed errors, rerun with: -s +==24945== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestModernCppFeatures_valgrind.txt b/log-files/2024-10-14_17-51-53/TestModernCppFeatures_valgrind.txt new file mode 100644 index 000000000..599ab9180 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestModernCppFeatures_valgrind.txt @@ -0,0 +1,73 @@ +==23998== Memcheck, a memory error detector +==23998== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==23998== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==23998== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestModernCppFeatures -malloc_debug -malloc_dump -memory_info +==23998== Parent PID: 23966 +==23998== +==23998== +==23998== FILE DESCRIPTORS: 9 open (3 std) at exit. +==23998== Open file descriptor 12: +==23998== at 0x616907D: pipe (pipe.c:29) +==23998== by 0xAEAD07D: ??? +==23998== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23998== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23998== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23998== by 0x4A23D38: PetscInitialize (pinit.c:924) +==23998== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23998== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23998== by 0x115753: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23998== by 0x111013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23998== by 0x1137AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23998== by 0x1136AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23998== by 0x113CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23998== by 0x10F815: main (TestModernCppFeatures.cpp:18) +==23998== +==23998== Open file descriptor 8: /dev/shm/open_mpi.0000 +==23998== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==23998== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==23998== by 0x5CB2822: ??? +==23998== by 0x5CB296F: ??? +==23998== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23998== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23998== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==23998== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==23998== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23998== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==23998== by 0x4A23D38: PetscInitialize (pinit.c:924) +==23998== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==23998== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==23998== by 0x115753: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==23998== by 0x111013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==23998== by 0x1137AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==23998== by 0x1136AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==23998== by 0x113CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==23998== by 0x10F815: main (TestModernCppFeatures.cpp:18) +==23998== +==23998== Open file descriptor 116: +==23998== +==23998== +==23998== Open file descriptor 113: +==23998== +==23998== +==23998== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestModernCppFeatures_valgrind.txt +==23998== +==23998== +==23998== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==23998== +==23998== +==23998== +==23998== HEAP SUMMARY: +==23998== in use at exit: 617,870 bytes in 8,238 blocks +==23998== total heap usage: 44,921 allocs, 36,683 frees, 1,338,161,815 bytes allocated +==23998== +==23998== LEAK SUMMARY: +==23998== definitely lost: 0 bytes in 0 blocks +==23998== indirectly lost: 0 bytes in 0 blocks +==23998== possibly lost: 0 bytes in 0 blocks +==23998== still reachable: 24 bytes in 2 blocks +==23998== suppressed: 617,846 bytes in 8,236 blocks +==23998== Reachable blocks (those to which a pointer was found) are not shown. +==23998== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==23998== +==23998== For lists of detected and suppressed errors, rerun with: -s +==23998== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestModifiers_valgrind.txt b/log-files/2024-10-14_17-51-53/TestModifiers_valgrind.txt new file mode 100644 index 000000000..21adf6367 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestModifiers_valgrind.txt @@ -0,0 +1,73 @@ +==42519== Memcheck, a memory error detector +==42519== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42519== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42519== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestModifiers -malloc_debug -malloc_dump -memory_info +==42519== Parent PID: 23966 +==42519== +==42519== +==42519== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42519== Open file descriptor 12: +==42519== at 0x88DC07D: pipe (pipe.c:29) +==42519== by 0x1433707D: ??? +==42519== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42519== by 0x9FD5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42519== by 0x9F6ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42519== by 0x8C65D38: PetscInitialize (pinit.c:924) +==42519== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42519== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42519== by 0x124F74: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==42519== by 0x11FB1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42519== by 0x12265E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42519== by 0x1224FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42519== by 0x122B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42519== by 0x11DF45: main (TestModifiers.cpp:19) +==42519== +==42519== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42519== at 0x88E0A1C: __open_nocancel (open64_nocancel.c:39) +==42519== by 0x8864BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42519== by 0x8419822: ??? +==42519== by 0x841996F: ??? +==42519== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42519== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42519== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42519== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42519== by 0x9FD5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42519== by 0x9F6ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42519== by 0x8C65D38: PetscInitialize (pinit.c:924) +==42519== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42519== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42519== by 0x124F74: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==42519== by 0x11FB1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42519== by 0x12265E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42519== by 0x1224FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42519== by 0x122B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42519== by 0x11DF45: main (TestModifiers.cpp:19) +==42519== +==42519== Open file descriptor 116: +==42519== +==42519== +==42519== Open file descriptor 113: +==42519== +==42519== +==42519== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestModifiers_valgrind.txt +==42519== +==42519== +==42519== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42519== +==42519== +==42519== +==42519== HEAP SUMMARY: +==42519== in use at exit: 620,193 bytes in 8,242 blocks +==42519== total heap usage: 50,663 allocs, 42,421 frees, 1,339,474,485 bytes allocated +==42519== +==42519== LEAK SUMMARY: +==42519== definitely lost: 0 bytes in 0 blocks +==42519== indirectly lost: 0 bytes in 0 blocks +==42519== possibly lost: 0 bytes in 0 blocks +==42519== still reachable: 1,867 bytes in 6 blocks +==42519== suppressed: 618,326 bytes in 8,236 blocks +==42519== Reachable blocks (those to which a pointer was found) are not shown. +==42519== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42519== +==42519== For lists of detected and suppressed errors, rerun with: -s +==42519== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestMonodomainConductionVelocity_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMonodomainConductionVelocity_valgrind.txt new file mode 100644 index 000000000..178869cce --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMonodomainConductionVelocity_valgrind.txt @@ -0,0 +1,73 @@ +==43279== Memcheck, a memory error detector +==43279== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43279== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43279== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainConductionVelocity -malloc_debug -malloc_dump -memory_info +==43279== Parent PID: 23966 +==43279== +==43279== +==43279== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43279== Open file descriptor 12: +==43279== at 0xA85D07D: pipe (pipe.c:29) +==43279== by 0x1433707D: ??? +==43279== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43279== by 0xBF58418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43279== by 0xBEF1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43279== by 0xABE6D38: PetscInitialize (pinit.c:924) +==43279== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43279== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43279== by 0x126B4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43279== by 0x121E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43279== by 0x1248CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43279== by 0x12476C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43279== by 0x124E03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43279== by 0x120235: main (TestMonodomainConductionVelocity.cpp:19) +==43279== +==43279== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43279== at 0xA861A1C: __open_nocancel (open64_nocancel.c:39) +==43279== by 0xA7E5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43279== by 0xA17E822: ??? +==43279== by 0xA17E96F: ??? +==43279== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43279== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43279== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43279== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43279== by 0xBF58418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43279== by 0xBEF1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43279== by 0xABE6D38: PetscInitialize (pinit.c:924) +==43279== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43279== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43279== by 0x126B4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43279== by 0x121E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43279== by 0x1248CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43279== by 0x12476C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43279== by 0x124E03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43279== by 0x120235: main (TestMonodomainConductionVelocity.cpp:19) +==43279== +==43279== Open file descriptor 116: +==43279== +==43279== +==43279== Open file descriptor 113: +==43279== +==43279== +==43279== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainConductionVelocity_valgrind.txt +==43279== +==43279== +==43279== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43279== +==43279== +==43279== +==43279== HEAP SUMMARY: +==43279== in use at exit: 618,830 bytes in 8,248 blocks +==43279== total heap usage: 385,468 allocs, 377,220 frees, 1,419,222,886 bytes allocated +==43279== +==43279== LEAK SUMMARY: +==43279== definitely lost: 0 bytes in 0 blocks +==43279== indirectly lost: 0 bytes in 0 blocks +==43279== possibly lost: 0 bytes in 0 blocks +==43279== still reachable: 24 bytes in 2 blocks +==43279== suppressed: 618,806 bytes in 8,246 blocks +==43279== Reachable blocks (those to which a pointer was found) are not shown. +==43279== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43279== +==43279== For lists of detected and suppressed errors, rerun with: -s +==43279== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2024-10-14_17-51-53/TestMonodomainFitzHughNagumo_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMonodomainFitzHughNagumo_valgrind.txt new file mode 100644 index 000000000..e63912ee9 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMonodomainFitzHughNagumo_valgrind.txt @@ -0,0 +1,73 @@ +==43329== Memcheck, a memory error detector +==43329== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43329== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43329== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainFitzHughNagumo -malloc_debug -malloc_dump -memory_info +==43329== Parent PID: 23966 +==43329== +==43329== +==43329== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43329== Open file descriptor 12: +==43329== at 0xA7EA07D: pipe (pipe.c:29) +==43329== by 0x1433707D: ??? +==43329== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43329== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43329== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43329== by 0xAB73D38: PetscInitialize (pinit.c:924) +==43329== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43329== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43329== by 0x1211B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43329== by 0x11C2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43329== by 0x11E6C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43329== by 0x11E5BE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43329== by 0x11EBD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43329== by 0x11AAB5: main (TestMonodomainFitzHughNagumo.cpp:18) +==43329== +==43329== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43329== at 0xA7EEA1C: __open_nocancel (open64_nocancel.c:39) +==43329== by 0xA772BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43329== by 0xA10B822: ??? +==43329== by 0xA10B96F: ??? +==43329== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43329== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43329== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43329== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43329== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43329== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43329== by 0xAB73D38: PetscInitialize (pinit.c:924) +==43329== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43329== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43329== by 0x1211B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43329== by 0x11C2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43329== by 0x11E6C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43329== by 0x11E5BE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43329== by 0x11EBD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43329== by 0x11AAB5: main (TestMonodomainFitzHughNagumo.cpp:18) +==43329== +==43329== Open file descriptor 116: +==43329== +==43329== +==43329== Open file descriptor 113: +==43329== +==43329== +==43329== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainFitzHughNagumo_valgrind.txt +==43329== +==43329== +==43329== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43329== +==43329== +==43329== +==43329== HEAP SUMMARY: +==43329== in use at exit: 618,830 bytes in 8,248 blocks +==43329== total heap usage: 80,869 allocs, 72,621 frees, 1,344,239,043 bytes allocated +==43329== +==43329== LEAK SUMMARY: +==43329== definitely lost: 0 bytes in 0 blocks +==43329== indirectly lost: 0 bytes in 0 blocks +==43329== possibly lost: 0 bytes in 0 blocks +==43329== still reachable: 24 bytes in 2 blocks +==43329== suppressed: 618,806 bytes in 8,246 blocks +==43329== Reachable blocks (those to which a pointer was found) are not shown. +==43329== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43329== +==43329== For lists of detected and suppressed errors, rerun with: -s +==43329== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 35) diff --git a/log-files/2024-10-14_17-51-53/TestMonodomainMassLumping_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMonodomainMassLumping_valgrind.txt new file mode 100644 index 000000000..c90dd7827 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMonodomainMassLumping_valgrind.txt @@ -0,0 +1,73 @@ +==43338== Memcheck, a memory error detector +==43338== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43338== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43338== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainMassLumping -malloc_debug -malloc_dump -memory_info +==43338== Parent PID: 23966 +==43338== +==43338== +==43338== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43338== Open file descriptor 12: +==43338== at 0xA89207D: pipe (pipe.c:29) +==43338== by 0x1433707D: ??? +==43338== by 0xD5A94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43338== by 0xA180418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43338== by 0xA119D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43338== by 0xAC1BD38: PetscInitialize (pinit.c:924) +==43338== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43338== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43338== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43338== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43338== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43338== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43338== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43338== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) +==43338== +==43338== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43338== at 0xA896A1C: __open_nocancel (open64_nocancel.c:39) +==43338== by 0xA81ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43338== by 0xA07C822: ??? +==43338== by 0xA07C96F: ??? +==43338== by 0xD64E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43338== by 0xD64E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43338== by 0xD604922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43338== by 0xD5A92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43338== by 0xA180418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43338== by 0xA119D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43338== by 0xAC1BD38: PetscInitialize (pinit.c:924) +==43338== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43338== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43338== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43338== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43338== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43338== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43338== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43338== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) +==43338== +==43338== Open file descriptor 116: +==43338== +==43338== +==43338== Open file descriptor 113: +==43338== +==43338== +==43338== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainMassLumping_valgrind.txt +==43338== +==43338== +==43338== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43338== +==43338== +==43338== +==43338== HEAP SUMMARY: +==43338== in use at exit: 618,759 bytes in 8,244 blocks +==43338== total heap usage: 406,621 allocs, 398,377 frees, 1,539,926,101 bytes allocated +==43338== +==43338== LEAK SUMMARY: +==43338== definitely lost: 0 bytes in 0 blocks +==43338== indirectly lost: 0 bytes in 0 blocks +==43338== possibly lost: 0 bytes in 0 blocks +==43338== still reachable: 24 bytes in 2 blocks +==43338== suppressed: 618,735 bytes in 8,242 blocks +==43338== Reachable blocks (those to which a pointer was found) are not shown. +==43338== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43338== +==43338== For lists of detected and suppressed errors, rerun with: -s +==43338== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 45 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestMonodomainProblem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMonodomainProblem_valgrind.txt new file mode 100644 index 000000000..2f2b69fdb --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMonodomainProblem_valgrind.txt @@ -0,0 +1,74 @@ +==43280== Memcheck, a memory error detector +==43280== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43280== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43280== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info +==43280== Parent PID: 23966 +==43280== +==43280== Warning: invalid file descriptor -1 in syscall close() +==43280== +==43280== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43280== Open file descriptor 12: +==43280== at 0xC10B07D: pipe (pipe.c:29) +==43280== by 0x1433707D: ??? +==43280== by 0xFFF54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43280== by 0xB9F9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43280== by 0xB992D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43280== by 0xA2D4D38: PetscInitialize (pinit.c:924) +==43280== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43280== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43280== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43280== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43280== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43280== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43280== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43280== by 0x13FC05: main (TestMonodomainProblem.cpp:19) +==43280== +==43280== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43280== at 0xC10FA1C: __open_nocancel (open64_nocancel.c:39) +==43280== by 0xC093BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43280== by 0xA17E822: ??? +==43280== by 0xA17E96F: ??? +==43280== by 0x1009C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43280== by 0x1009C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43280== by 0x10052922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43280== by 0xFFF52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43280== by 0xB9F9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43280== by 0xB992D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43280== by 0xA2D4D38: PetscInitialize (pinit.c:924) +==43280== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43280== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43280== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43280== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43280== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43280== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43280== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43280== by 0x13FC05: main (TestMonodomainProblem.cpp:19) +==43280== +==43280== Open file descriptor 116: +==43280== +==43280== +==43280== Open file descriptor 113: +==43280== +==43280== +==43280== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt +==43280== +==43280== +==43280== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43280== +==43280== +==43280== +==43280== HEAP SUMMARY: +==43280== in use at exit: 618,759 bytes in 8,244 blocks +==43280== total heap usage: 6,613,791 allocs, 6,605,547 frees, 4,016,613,463 bytes allocated +==43280== +==43280== LEAK SUMMARY: +==43280== definitely lost: 0 bytes in 0 blocks +==43280== indirectly lost: 0 bytes in 0 blocks +==43280== possibly lost: 0 bytes in 0 blocks +==43280== still reachable: 24 bytes in 2 blocks +==43280== suppressed: 618,735 bytes in 8,242 blocks +==43280== Reachable blocks (those to which a pointer was found) are not shown. +==43280== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43280== +==43280== For lists of detected and suppressed errors, rerun with: -s +==43280== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt new file mode 100644 index 000000000..2626b6220 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43296== Memcheck, a memory error detector +==43296== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43296== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43296== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainPurkinjeAssemblersAndSolver -malloc_debug -malloc_dump -memory_info +==43296== Parent PID: 23966 +==43296== +==43296== +==43296== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43296== Open file descriptor 12: +==43296== at 0xC05F07D: pipe (pipe.c:29) +==43296== by 0x1433707D: ??? +==43296== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43296== by 0xC3DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43296== by 0xC375D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43296== by 0xA60CD38: PetscInitialize (pinit.c:924) +==43296== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43296== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43296== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43296== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43296== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43296== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43296== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43296== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) +==43296== +==43296== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43296== at 0xC063A1C: __open_nocancel (open64_nocancel.c:39) +==43296== by 0xBFE7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43296== by 0xB89B822: ??? +==43296== by 0xB89B96F: ??? +==43296== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43296== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43296== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43296== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43296== by 0xC3DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43296== by 0xC375D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43296== by 0xA60CD38: PetscInitialize (pinit.c:924) +==43296== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43296== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43296== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43296== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43296== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43296== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43296== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43296== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) +==43296== +==43296== Open file descriptor 116: +==43296== +==43296== +==43296== Open file descriptor 113: +==43296== +==43296== +==43296== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt +==43296== +==43296== +==43296== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43296== +==43296== +==43296== +==43296== HEAP SUMMARY: +==43296== in use at exit: 618,830 bytes in 8,248 blocks +==43296== total heap usage: 83,437 allocs, 75,189 frees, 1,344,976,172 bytes allocated +==43296== +==43296== LEAK SUMMARY: +==43296== definitely lost: 0 bytes in 0 blocks +==43296== indirectly lost: 0 bytes in 0 blocks +==43296== possibly lost: 0 bytes in 0 blocks +==43296== still reachable: 24 bytes in 2 blocks +==43296== suppressed: 618,806 bytes in 8,246 blocks +==43296== Reachable blocks (those to which a pointer was found) are not shown. +==43296== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43296== +==43296== For lists of detected and suppressed errors, rerun with: -s +==43296== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 38) diff --git a/log-files/2024-10-14_17-51-53/TestMonodomainPurkinjeProblem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMonodomainPurkinjeProblem_valgrind.txt new file mode 100644 index 000000000..80d9d4f58 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMonodomainPurkinjeProblem_valgrind.txt @@ -0,0 +1,73 @@ +==43306== Memcheck, a memory error detector +==43306== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43306== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43306== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainPurkinjeProblem -malloc_debug -malloc_dump -memory_info +==43306== Parent PID: 23966 +==43306== +==43306== +==43306== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43306== Open file descriptor 12: +==43306== at 0xA75B07D: pipe (pipe.c:29) +==43306== by 0x1433707D: ??? +==43306== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43306== by 0xBE54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43306== by 0xBDEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43306== by 0xAAE4D38: PetscInitialize (pinit.c:924) +==43306== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43306== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43306== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43306== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43306== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43306== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43306== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43306== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) +==43306== +==43306== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43306== at 0xA75FA1C: __open_nocancel (open64_nocancel.c:39) +==43306== by 0xA6E3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43306== by 0xA07C822: ??? +==43306== by 0xA07C96F: ??? +==43306== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43306== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43306== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43306== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43306== by 0xBE54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43306== by 0xBDEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43306== by 0xAAE4D38: PetscInitialize (pinit.c:924) +==43306== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43306== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43306== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43306== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43306== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43306== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43306== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43306== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) +==43306== +==43306== Open file descriptor 116: +==43306== +==43306== +==43306== Open file descriptor 113: +==43306== +==43306== +==43306== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainPurkinjeProblem_valgrind.txt +==43306== +==43306== +==43306== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43306== +==43306== +==43306== +==43306== HEAP SUMMARY: +==43306== in use at exit: 618,759 bytes in 8,244 blocks +==43306== total heap usage: 1,149,688 allocs, 1,141,444 frees, 2,579,749,353 bytes allocated +==43306== +==43306== LEAK SUMMARY: +==43306== definitely lost: 0 bytes in 0 blocks +==43306== indirectly lost: 0 bytes in 0 blocks +==43306== possibly lost: 0 bytes in 0 blocks +==43306== still reachable: 24 bytes in 2 blocks +==43306== suppressed: 618,735 bytes in 8,242 blocks +==43306== Reachable blocks (those to which a pointer was found) are not shown. +==43306== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43306== +==43306== For lists of detected and suppressed errors, rerun with: -s +==43306== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 63 from 31) diff --git a/log-files/2024-10-14_17-51-53/TestMonodomainStiffnessMatrixAssembler_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMonodomainStiffnessMatrixAssembler_valgrind.txt new file mode 100644 index 000000000..9c12235ab --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMonodomainStiffnessMatrixAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==43272== Memcheck, a memory error detector +==43272== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43272== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43272== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainStiffnessMatrixAssembler -malloc_debug -malloc_dump -memory_info +==43272== Parent PID: 23966 +==43272== +==43272== +==43272== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43272== Open file descriptor 12: +==43272== at 0xBFEC07D: pipe (pipe.c:29) +==43272== by 0x1433707D: ??? +==43272== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43272== by 0xC369418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43272== by 0xC302D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43272== by 0xA597D38: PetscInitialize (pinit.c:924) +==43272== by 0xA46E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43272== by 0xA46E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43272== by 0x13BAD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43272== by 0x136853: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43272== by 0x1393FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43272== by 0x1392F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43272== by 0x139909: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43272== by 0x135055: main (TestMonodomainStiffnessMatrixAssembler.cpp:18) +==43272== +==43272== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43272== at 0xBFF0A1C: __open_nocancel (open64_nocancel.c:39) +==43272== by 0xBF74BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43272== by 0xB826822: ??? +==43272== by 0xB82696F: ??? +==43272== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43272== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43272== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43272== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43272== by 0xC369418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43272== by 0xC302D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43272== by 0xA597D38: PetscInitialize (pinit.c:924) +==43272== by 0xA46E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43272== by 0xA46E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43272== by 0x13BAD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43272== by 0x136853: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43272== by 0x1393FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43272== by 0x1392F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43272== by 0x139909: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43272== by 0x135055: main (TestMonodomainStiffnessMatrixAssembler.cpp:18) +==43272== +==43272== Open file descriptor 116: +==43272== +==43272== +==43272== Open file descriptor 113: +==43272== +==43272== +==43272== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainStiffnessMatrixAssembler_valgrind.txt +==43272== +==43272== +==43272== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43272== +==43272== +==43272== +==43272== HEAP SUMMARY: +==43272== in use at exit: 618,350 bytes in 8,238 blocks +==43272== total heap usage: 49,644 allocs, 41,406 frees, 1,338,640,545 bytes allocated +==43272== +==43272== LEAK SUMMARY: +==43272== definitely lost: 0 bytes in 0 blocks +==43272== indirectly lost: 0 bytes in 0 blocks +==43272== possibly lost: 0 bytes in 0 blocks +==43272== still reachable: 24 bytes in 2 blocks +==43272== suppressed: 618,326 bytes in 8,236 blocks +==43272== Reachable blocks (those to which a pointer was found) are not shown. +==43272== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43272== +==43272== For lists of detected and suppressed errors, rerun with: -s +==43272== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestMonodomainTissue_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMonodomainTissue_valgrind.txt new file mode 100644 index 000000000..11d089576 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMonodomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==43339== Memcheck, a memory error detector +==43339== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43339== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43339== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainTissue -malloc_debug -malloc_dump -memory_info +==43339== Parent PID: 23966 +==43339== +==43339== +==43339== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43339== Open file descriptor 12: +==43339== at 0xBB1B07D: pipe (pipe.c:29) +==43339== by 0x1433707D: ??? +==43339== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43339== by 0xBE96418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43339== by 0xBE2FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43339== by 0xA1D0D38: PetscInitialize (pinit.c:924) +==43339== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43339== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43339== by 0x1294CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43339== by 0x1242BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43339== by 0x126FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43339== by 0x126E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43339== by 0x1274D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43339== by 0x1226E5: main (TestMonodomainTissue.cpp:19) +==43339== +==43339== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43339== at 0xBB1FA1C: __open_nocancel (open64_nocancel.c:39) +==43339== by 0xBAA3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43339== by 0xA07C822: ??? +==43339== by 0xA07C96F: ??? +==43339== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43339== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43339== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43339== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43339== by 0xBE96418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43339== by 0xBE2FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43339== by 0xA1D0D38: PetscInitialize (pinit.c:924) +==43339== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43339== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43339== by 0x1294CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43339== by 0x1242BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43339== by 0x126FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43339== by 0x126E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43339== by 0x1274D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43339== by 0x1226E5: main (TestMonodomainTissue.cpp:19) +==43339== +==43339== Open file descriptor 116: +==43339== +==43339== +==43339== Open file descriptor 113: +==43339== +==43339== +==43339== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainTissue_valgrind.txt +==43339== +==43339== +==43339== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43339== +==43339== +==43339== +==43339== HEAP SUMMARY: +==43339== in use at exit: 618,350 bytes in 8,238 blocks +==43339== total heap usage: 260,748 allocs, 252,510 frees, 1,394,488,962 bytes allocated +==43339== +==43339== LEAK SUMMARY: +==43339== definitely lost: 0 bytes in 0 blocks +==43339== indirectly lost: 0 bytes in 0 blocks +==43339== possibly lost: 0 bytes in 0 blocks +==43339== still reachable: 24 bytes in 2 blocks +==43339== suppressed: 618,326 bytes in 8,236 blocks +==43339== Reachable blocks (those to which a pointer was found) are not shown. +==43339== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43339== +==43339== For lists of detected and suppressed errors, rerun with: -s +==43339== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-10-14_17-51-53/TestMonodomainWithSvi_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMonodomainWithSvi_valgrind.txt new file mode 100644 index 000000000..34437d6ef --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMonodomainWithSvi_valgrind.txt @@ -0,0 +1,73 @@ +==43340== Memcheck, a memory error detector +==43340== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43340== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43340== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainWithSvi -malloc_debug -malloc_dump -memory_info +==43340== Parent PID: 23966 +==43340== +==43340== +==43340== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43340== Open file descriptor 12: +==43340== at 0xA7EA07D: pipe (pipe.c:29) +==43340== by 0x1433707D: ??? +==43340== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43340== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43340== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43340== by 0xAB73D38: PetscInitialize (pinit.c:924) +==43340== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43340== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43340== by 0x123842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43340== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43340== by 0x121416: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43340== by 0x1212B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43340== by 0x12194D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43340== by 0x11D175: main (TestMonodomainWithSvi.cpp:19) +==43340== +==43340== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43340== at 0xA7EEA1C: __open_nocancel (open64_nocancel.c:39) +==43340== by 0xA772BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43340== by 0xA10B822: ??? +==43340== by 0xA10B96F: ??? +==43340== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43340== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43340== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43340== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43340== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43340== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43340== by 0xAB73D38: PetscInitialize (pinit.c:924) +==43340== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43340== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43340== by 0x123842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43340== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43340== by 0x121416: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43340== by 0x1212B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43340== by 0x12194D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43340== by 0x11D175: main (TestMonodomainWithSvi.cpp:19) +==43340== +==43340== Open file descriptor 116: +==43340== +==43340== +==43340== Open file descriptor 113: +==43340== +==43340== +==43340== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainWithSvi_valgrind.txt +==43340== +==43340== +==43340== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43340== +==43340== +==43340== +==43340== HEAP SUMMARY: +==43340== in use at exit: 618,759 bytes in 8,244 blocks +==43340== total heap usage: 3,755,451 allocs, 3,747,207 frees, 1,783,479,471 bytes allocated +==43340== +==43340== LEAK SUMMARY: +==43340== definitely lost: 0 bytes in 0 blocks +==43340== indirectly lost: 0 bytes in 0 blocks +==43340== possibly lost: 0 bytes in 0 blocks +==43340== still reachable: 24 bytes in 2 blocks +==43340== suppressed: 618,735 bytes in 8,242 blocks +==43340== Reachable blocks (those to which a pointer was found) are not shown. +==43340== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43340== +==43340== For lists of detected and suppressed errors, rerun with: -s +==43340== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 78 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestMonodomainWithTimeAdaptivity_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMonodomainWithTimeAdaptivity_valgrind.txt new file mode 100644 index 000000000..d4e5a7b0a --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMonodomainWithTimeAdaptivity_valgrind.txt @@ -0,0 +1,73 @@ +==43361== Memcheck, a memory error detector +==43361== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43361== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43361== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainWithTimeAdaptivity -malloc_debug -malloc_dump -memory_info +==43361== Parent PID: 23966 +==43361== +==43361== +==43361== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43361== Open file descriptor 12: +==43361== at 0xBC1007D: pipe (pipe.c:29) +==43361== by 0x1433707D: ??? +==43361== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43361== by 0xB4FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43361== by 0xB497D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43361== by 0xA16BD38: PetscInitialize (pinit.c:924) +==43361== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43361== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43361== by 0x127824: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43361== by 0x121AED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43361== by 0x124B6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43361== by 0x124A0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43361== by 0x1250A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43361== by 0x11FF15: main (TestMonodomainWithTimeAdaptivity.cpp:19) +==43361== +==43361== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43361== at 0xBC14A1C: __open_nocancel (open64_nocancel.c:39) +==43361== by 0xBB98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43361== by 0xB3FA822: ??? +==43361== by 0xB3FA96F: ??? +==43361== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43361== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43361== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43361== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43361== by 0xB4FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43361== by 0xB497D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43361== by 0xA16BD38: PetscInitialize (pinit.c:924) +==43361== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43361== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43361== by 0x127824: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43361== by 0x121AED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43361== by 0x124B6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43361== by 0x124A0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43361== by 0x1250A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43361== by 0x11FF15: main (TestMonodomainWithTimeAdaptivity.cpp:19) +==43361== +==43361== Open file descriptor 116: +==43361== +==43361== +==43361== Open file descriptor 113: +==43361== +==43361== +==43361== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainWithTimeAdaptivity_valgrind.txt +==43361== +==43361== +==43361== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43361== +==43361== +==43361== +==43361== HEAP SUMMARY: +==43361== in use at exit: 618,759 bytes in 8,244 blocks +==43361== total heap usage: 1,145,049 allocs, 1,136,805 frees, 1,400,680,659 bytes allocated +==43361== +==43361== LEAK SUMMARY: +==43361== definitely lost: 0 bytes in 0 blocks +==43361== indirectly lost: 0 bytes in 0 blocks +==43361== possibly lost: 0 bytes in 0 blocks +==43361== still reachable: 24 bytes in 2 blocks +==43361== suppressed: 618,735 bytes in 8,242 blocks +==43361== Reachable blocks (those to which a pointer was found) are not shown. +==43361== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43361== +==43361== For lists of detected and suppressed errors, rerun with: -s +==43361== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 42 from 31) diff --git a/log-files/2024-10-14_17-51-53/TestMoreMechanics_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMoreMechanics_valgrind.txt new file mode 100644 index 000000000..8008e7424 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMoreMechanics_valgrind.txt @@ -0,0 +1,73 @@ +==25244== Memcheck, a memory error detector +==25244== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25244== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25244== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMoreMechanics -malloc_debug -malloc_dump -memory_info +==25244== Parent PID: 23966 +==25244== +==25244== +==25244== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25244== Open file descriptor 12: +==25244== at 0x866F07D: pipe (pipe.c:29) +==25244== by 0x106E907D: ??? +==25244== by 0xC4F54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25244== by 0x8CD6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25244== by 0x8C6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25244== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25244== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25244== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25244== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25244== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25244== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25244== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25244== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25244== by 0x135775: main (TestMoreMechanics.cpp:19) +==25244== +==25244== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25244== at 0x8673A1C: __open_nocancel (open64_nocancel.c:39) +==25244== by 0x85F7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25244== by 0x7EC3822: ??? +==25244== by 0x7EC396F: ??? +==25244== by 0xC59A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25244== by 0xC59A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25244== by 0xC550922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25244== by 0xC4F52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25244== by 0x8CD6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25244== by 0x8C6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25244== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25244== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25244== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25244== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25244== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25244== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25244== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25244== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25244== by 0x135775: main (TestMoreMechanics.cpp:19) +==25244== +==25244== Open file descriptor 116: +==25244== +==25244== +==25244== Open file descriptor 113: +==25244== +==25244== +==25244== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMoreMechanics_valgrind.txt +==25244== +==25244== +==25244== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25244== +==25244== +==25244== +==25244== HEAP SUMMARY: +==25244== in use at exit: 618,215 bytes in 8,234 blocks +==25244== total heap usage: 417,198 allocs, 408,964 frees, 1,440,942,871 bytes allocated +==25244== +==25244== LEAK SUMMARY: +==25244== definitely lost: 0 bytes in 0 blocks +==25244== indirectly lost: 0 bytes in 0 blocks +==25244== possibly lost: 0 bytes in 0 blocks +==25244== still reachable: 24 bytes in 2 blocks +==25244== suppressed: 618,191 bytes in 8,232 blocks +==25244== Reachable blocks (those to which a pointer was found) are not shown. +==25244== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25244== +==25244== For lists of detected and suppressed errors, rerun with: -s +==25244== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-10-14_17-51-53/TestMultiLobeAirwayGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMultiLobeAirwayGenerator_valgrind.txt new file mode 100644 index 000000000..099b48331 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMultiLobeAirwayGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==41040== Memcheck, a memory error detector +==41040== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41040== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41040== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMultiLobeAirwayGenerator -malloc_debug -malloc_dump -memory_info +==41040== Parent PID: 23966 +==41040== +==41040== +==41040== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41040== Open file descriptor 12: +==41040== at 0x8D3507D: pipe (pipe.c:29) +==41040== by 0x107B407D: ??? +==41040== by 0xC0A64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41040== by 0x7B39418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41040== by 0x7AD2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41040== by 0x67A6D38: PetscInitialize (pinit.c:924) +==41040== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41040== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41040== by 0x11A3B7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41040== by 0x11592D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41040== by 0x118434: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41040== by 0x1182D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41040== by 0x11896B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41040== by 0x113D55: main (TestMultiLobeAirwayGenerator.cpp:19) +==41040== +==41040== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41040== at 0x8D39A1C: __open_nocancel (open64_nocancel.c:39) +==41040== by 0x8CBDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41040== by 0x7A35822: ??? +==41040== by 0x7A3596F: ??? +==41040== by 0xC14B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41040== by 0xC14B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41040== by 0xC101922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41040== by 0xC0A62DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41040== by 0x7B39418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41040== by 0x7AD2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41040== by 0x67A6D38: PetscInitialize (pinit.c:924) +==41040== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41040== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41040== by 0x11A3B7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41040== by 0x11592D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41040== by 0x118434: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41040== by 0x1182D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41040== by 0x11896B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41040== by 0x113D55: main (TestMultiLobeAirwayGenerator.cpp:19) +==41040== +==41040== Open file descriptor 116: +==41040== +==41040== +==41040== Open file descriptor 113: +==41040== +==41040== +==41040== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMultiLobeAirwayGenerator_valgrind.txt +==41040== +==41040== +==41040== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41040== +==41040== +==41040== +==41040== HEAP SUMMARY: +==41040== in use at exit: 618,334 bytes in 8,238 blocks +==41040== total heap usage: 175,715 allocs, 167,477 frees, 1,419,543,672 bytes allocated +==41040== +==41040== LEAK SUMMARY: +==41040== definitely lost: 0 bytes in 0 blocks +==41040== indirectly lost: 0 bytes in 0 blocks +==41040== possibly lost: 0 bytes in 0 blocks +==41040== still reachable: 24 bytes in 2 blocks +==41040== suppressed: 618,310 bytes in 8,236 blocks +==41040== Reachable blocks (those to which a pointer was found) are not shown. +==41040== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41040== +==41040== For lists of detected and suppressed errors, rerun with: -s +==41040== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestMutableMeshRemesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMutableMeshRemesh_valgrind.txt new file mode 100644 index 000000000..4f0f33d3e --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMutableMeshRemesh_valgrind.txt @@ -0,0 +1,73 @@ +==24400== Memcheck, a memory error detector +==24400== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24400== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24400== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableMeshRemesh -malloc_debug -malloc_dump -memory_info +==24400== Parent PID: 23966 +==24400== +==24400== +==24400== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24400== Open file descriptor 12: +==24400== at 0x6C5C07D: pipe (pipe.c:29) +==24400== by 0x100D407D: ??? +==24400== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24400== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24400== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24400== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24400== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24400== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24400== by 0x1241D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24400== by 0x11F1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24400== by 0x121F40: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24400== by 0x121DE0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24400== by 0x122477: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24400== by 0x11D615: main (TestMutableMeshRemesh.cpp:19) +==24400== +==24400== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24400== at 0x6C60A1C: __open_nocancel (open64_nocancel.c:39) +==24400== by 0x6BE4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24400== by 0x6597822: ??? +==24400== by 0x659796F: ??? +==24400== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24400== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24400== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24400== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24400== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24400== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24400== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24400== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24400== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24400== by 0x1241D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24400== by 0x11F1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24400== by 0x121F40: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24400== by 0x121DE0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24400== by 0x122477: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24400== by 0x11D615: main (TestMutableMeshRemesh.cpp:19) +==24400== +==24400== Open file descriptor 116: +==24400== +==24400== +==24400== Open file descriptor 113: +==24400== +==24400== +==24400== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableMeshRemesh_valgrind.txt +==24400== +==24400== +==24400== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24400== +==24400== +==24400== +==24400== HEAP SUMMARY: +==24400== in use at exit: 618,238 bytes in 8,238 blocks +==24400== total heap usage: 264,075 allocs, 255,837 frees, 1,353,001,035 bytes allocated +==24400== +==24400== LEAK SUMMARY: +==24400== definitely lost: 0 bytes in 0 blocks +==24400== indirectly lost: 0 bytes in 0 blocks +==24400== possibly lost: 0 bytes in 0 blocks +==24400== still reachable: 24 bytes in 2 blocks +==24400== suppressed: 618,214 bytes in 8,236 blocks +==24400== Reachable blocks (those to which a pointer was found) are not shown. +==24400== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24400== +==24400== For lists of detected and suppressed errors, rerun with: -s +==24400== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestMutableMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMutableMesh_valgrind.txt new file mode 100644 index 000000000..46210088c --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMutableMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24396== Memcheck, a memory error detector +==24396== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24396== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24396== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableMesh -malloc_debug -malloc_dump -memory_info +==24396== Parent PID: 23966 +==24396== +==24396== +==24396== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24396== Open file descriptor 12: +==24396== at 0x6C9E07D: pipe (pipe.c:29) +==24396== by 0x100D407D: ??? +==24396== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24396== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24396== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24396== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24396== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24396== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24396== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24396== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24396== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24396== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24396== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24396== by 0x12C225: main (TestMutableMesh.cpp:19) +==24396== +==24396== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24396== at 0x6CA2A1C: __open_nocancel (open64_nocancel.c:39) +==24396== by 0x6C26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24396== by 0x6597822: ??? +==24396== by 0x659796F: ??? +==24396== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24396== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24396== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24396== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24396== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24396== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24396== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24396== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24396== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24396== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24396== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24396== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24396== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24396== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24396== by 0x12C225: main (TestMutableMesh.cpp:19) +==24396== +==24396== Open file descriptor 116: +==24396== +==24396== +==24396== Open file descriptor 113: +==24396== +==24396== +==24396== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableMesh_valgrind.txt +==24396== +==24396== +==24396== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24396== +==24396== +==24396== +==24396== HEAP SUMMARY: +==24396== in use at exit: 618,238 bytes in 8,238 blocks +==24396== total heap usage: 710,942 allocs, 702,704 frees, 1,368,555,429 bytes allocated +==24396== +==24396== LEAK SUMMARY: +==24396== definitely lost: 0 bytes in 0 blocks +==24396== indirectly lost: 0 bytes in 0 blocks +==24396== possibly lost: 0 bytes in 0 blocks +==24396== still reachable: 24 bytes in 2 blocks +==24396== suppressed: 618,214 bytes in 8,236 blocks +==24396== Reachable blocks (those to which a pointer was found) are not shown. +==24396== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24396== +==24396== For lists of detected and suppressed errors, rerun with: -s +==24396== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt new file mode 100644 index 000000000..f04c74ed6 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt @@ -0,0 +1,73 @@ +==26039== Memcheck, a memory error detector +==26039== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26039== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26039== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMutableVertexMeshOperationsWithPopulationSrn -malloc_debug -malloc_dump -memory_info +==26039== Parent PID: 23966 +==26039== +==26039== +==26039== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26039== Open file descriptor 12: +==26039== at 0x10CB807D: pipe (pipe.c:29) +==26039== by 0x196BC07D: ??? +==26039== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26039== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26039== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26039== by 0xF22DD38: PetscInitialize (pinit.c:924) +==26039== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26039== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26039== by 0x12FA43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26039== by 0x12AAD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26039== by 0x12D2E4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26039== by 0x12D1E0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26039== by 0x12D7F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26039== by 0x1292D5: main (TestMutableVertexMeshOperationsWithPopulationSrn.cpp:18) +==26039== +==26039== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26039== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==26039== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26039== by 0x104BC822: ??? +==26039== by 0x104BC96F: ??? +==26039== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26039== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26039== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26039== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26039== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26039== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26039== by 0xF22DD38: PetscInitialize (pinit.c:924) +==26039== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26039== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26039== by 0x12FA43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26039== by 0x12AAD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26039== by 0x12D2E4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26039== by 0x12D1E0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26039== by 0x12D7F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26039== by 0x1292D5: main (TestMutableVertexMeshOperationsWithPopulationSrn.cpp:18) +==26039== +==26039== Open file descriptor 116: +==26039== +==26039== +==26039== Open file descriptor 113: +==26039== +==26039== +==26039== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt +==26039== +==26039== +==26039== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26039== +==26039== +==26039== +==26039== HEAP SUMMARY: +==26039== in use at exit: 618,366 bytes in 8,239 blocks +==26039== total heap usage: 60,808 allocs, 52,569 frees, 1,339,311,427 bytes allocated +==26039== +==26039== LEAK SUMMARY: +==26039== definitely lost: 0 bytes in 0 blocks +==26039== indirectly lost: 0 bytes in 0 blocks +==26039== possibly lost: 0 bytes in 0 blocks +==26039== still reachable: 56 bytes in 3 blocks +==26039== suppressed: 618,310 bytes in 8,236 blocks +==26039== Reachable blocks (those to which a pointer was found) are not shown. +==26039== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26039== +==26039== For lists of detected and suppressed errors, rerun with: -s +==26039== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestMutableVertexMeshReMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMutableVertexMeshReMesh_valgrind.txt new file mode 100644 index 000000000..92212c7ef --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMutableVertexMeshReMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24707== Memcheck, a memory error detector +==24707== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24707== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24707== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMeshReMesh -malloc_debug -malloc_dump -memory_info +==24707== Parent PID: 23966 +==24707== +==24707== +==24707== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24707== Open file descriptor 12: +==24707== at 0x815307D: pipe (pipe.c:29) +==24707== by 0x100D407D: ??? +==24707== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24707== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24707== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24707== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24707== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24707== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24707== by 0x1B0C07: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24707== by 0x1A87FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24707== by 0x1AC684: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24707== by 0x1AC524: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24707== by 0x1ACBBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24707== by 0x1A6C25: main (TestMutableVertexMeshReMesh.cpp:19) +==24707== +==24707== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24707== at 0x8157A1C: __open_nocancel (open64_nocancel.c:39) +==24707== by 0x80DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24707== by 0x6597822: ??? +==24707== by 0x659796F: ??? +==24707== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24707== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24707== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24707== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24707== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24707== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24707== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24707== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24707== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24707== by 0x1B0C07: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24707== by 0x1A87FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24707== by 0x1AC684: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24707== by 0x1AC524: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24707== by 0x1ACBBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24707== by 0x1A6C25: main (TestMutableVertexMeshReMesh.cpp:19) +==24707== +==24707== Open file descriptor 116: +==24707== +==24707== +==24707== Open file descriptor 113: +==24707== +==24707== +==24707== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshReMesh_valgrind.txt +==24707== +==24707== +==24707== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24707== +==24707== +==24707== +==24707== HEAP SUMMARY: +==24707== in use at exit: 620,790 bytes in 8,239 blocks +==24707== total heap usage: 81,708 allocs, 73,469 frees, 1,340,048,246 bytes allocated +==24707== +==24707== LEAK SUMMARY: +==24707== definitely lost: 0 bytes in 0 blocks +==24707== indirectly lost: 0 bytes in 0 blocks +==24707== possibly lost: 0 bytes in 0 blocks +==24707== still reachable: 2,576 bytes in 3 blocks +==24707== suppressed: 618,214 bytes in 8,236 blocks +==24707== Reachable blocks (those to which a pointer was found) are not shown. +==24707== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24707== +==24707== For lists of detected and suppressed errors, rerun with: -s +==24707== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestMutableVertexMeshRosetteMethods_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMutableVertexMeshRosetteMethods_valgrind.txt new file mode 100644 index 000000000..367185090 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMutableVertexMeshRosetteMethods_valgrind.txt @@ -0,0 +1,73 @@ +==24711== Memcheck, a memory error detector +==24711== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24711== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24711== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMeshRosetteMethods -malloc_debug -malloc_dump -memory_info +==24711== Parent PID: 23966 +==24711== +==24711== +==24711== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24711== Open file descriptor 12: +==24711== at 0x823C07D: pipe (pipe.c:29) +==24711== by 0x100D407D: ??? +==24711== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24711== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24711== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24711== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24711== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24711== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24711== by 0x122CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24711== by 0x11DCDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24711== by 0x120960: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24711== by 0x120800: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24711== by 0x120E97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24711== by 0x11C105: main (TestMutableVertexMeshRosetteMethods.cpp:19) +==24711== +==24711== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24711== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24711== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24711== by 0x6597822: ??? +==24711== by 0x659796F: ??? +==24711== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24711== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24711== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24711== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24711== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24711== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24711== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24711== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24711== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24711== by 0x122CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24711== by 0x11DCDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24711== by 0x120960: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24711== by 0x120800: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24711== by 0x120E97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24711== by 0x11C105: main (TestMutableVertexMeshRosetteMethods.cpp:19) +==24711== +==24711== Open file descriptor 116: +==24711== +==24711== +==24711== Open file descriptor 113: +==24711== +==24711== +==24711== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshRosetteMethods_valgrind.txt +==24711== +==24711== +==24711== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24711== +==24711== +==24711== +==24711== HEAP SUMMARY: +==24711== in use at exit: 620,790 bytes in 8,239 blocks +==24711== total heap usage: 53,311 allocs, 45,072 frees, 1,338,841,763 bytes allocated +==24711== +==24711== LEAK SUMMARY: +==24711== definitely lost: 0 bytes in 0 blocks +==24711== indirectly lost: 0 bytes in 0 blocks +==24711== possibly lost: 0 bytes in 0 blocks +==24711== still reachable: 2,576 bytes in 3 blocks +==24711== suppressed: 618,214 bytes in 8,236 blocks +==24711== Reachable blocks (those to which a pointer was found) are not shown. +==24711== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24711== +==24711== For lists of detected and suppressed errors, rerun with: -s +==24711== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestMutableVertexMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestMutableVertexMesh_valgrind.txt new file mode 100644 index 000000000..ff59b5488 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestMutableVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24693== Memcheck, a memory error detector +==24693== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24693== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24693== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMesh -malloc_debug -malloc_dump -memory_info +==24693== Parent PID: 23966 +==24693== +==24693== +==24693== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24693== Open file descriptor 12: +==24693== at 0x815307D: pipe (pipe.c:29) +==24693== by 0x100D407D: ??? +==24693== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24693== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24693== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24693== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24693== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24693== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24693== by 0x1B5143: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24693== by 0x1AE9BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24693== by 0x1B27F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24693== by 0x1B2696: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24693== by 0x1B2D2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24693== by 0x1ACDE5: main (TestMutableVertexMesh.cpp:19) +==24693== +==24693== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24693== at 0x8157A1C: __open_nocancel (open64_nocancel.c:39) +==24693== by 0x80DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24693== by 0x6597822: ??? +==24693== by 0x659796F: ??? +==24693== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24693== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24693== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24693== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24693== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24693== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24693== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24693== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24693== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24693== by 0x1B5143: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24693== by 0x1AE9BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24693== by 0x1B27F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24693== by 0x1B2696: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24693== by 0x1B2D2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24693== by 0x1ACDE5: main (TestMutableVertexMesh.cpp:19) +==24693== +==24693== Open file descriptor 116: +==24693== +==24693== +==24693== Open file descriptor 113: +==24693== +==24693== +==24693== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMesh_valgrind.txt +==24693== +==24693== +==24693== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24693== +==24693== +==24693== +==24693== HEAP SUMMARY: +==24693== in use at exit: 620,790 bytes in 8,239 blocks +==24693== total heap usage: 58,721 allocs, 50,482 frees, 1,339,663,145 bytes allocated +==24693== +==24693== LEAK SUMMARY: +==24693== definitely lost: 0 bytes in 0 blocks +==24693== indirectly lost: 0 bytes in 0 blocks +==24693== possibly lost: 0 bytes in 0 blocks +==24693== still reachable: 2,576 bytes in 3 blocks +==24693== suppressed: 618,214 bytes in 8,236 blocks +==24693== Reachable blocks (those to which a pointer was found) are not shown. +==24693== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24693== +==24693== For lists of detected and suppressed errors, rerun with: -s +==24693== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-10-14_17-51-53/TestNeumannStimulus_valgrind.txt b/log-files/2024-10-14_17-51-53/TestNeumannStimulus_valgrind.txt new file mode 100644 index 000000000..524b02834 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestNeumannStimulus_valgrind.txt @@ -0,0 +1,73 @@ +==43469== Memcheck, a memory error detector +==43469== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43469== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43469== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestNeumannStimulus -malloc_debug -malloc_dump -memory_info +==43469== Parent PID: 23966 +==43469== +==43469== +==43469== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43469== Open file descriptor 12: +==43469== at 0xAB8707D: pipe (pipe.c:29) +==43469== by 0x1433707D: ??? +==43469== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43469== by 0xC282418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43469== by 0xC21BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43469== by 0xAF10D38: PetscInitialize (pinit.c:924) +==43469== by 0xA46E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43469== by 0xA46E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43469== by 0x12243C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43469== by 0x11D413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43469== by 0x11F854: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43469== by 0x11F750: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43469== by 0x11FD63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43469== by 0x11BC15: main (TestNeumannStimulus.cpp:18) +==43469== +==43469== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43469== at 0xAB8BA1C: __open_nocancel (open64_nocancel.c:39) +==43469== by 0xAB0FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43469== by 0xA4A8822: ??? +==43469== by 0xA4A896F: ??? +==43469== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43469== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43469== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43469== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43469== by 0xC282418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43469== by 0xC21BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43469== by 0xAF10D38: PetscInitialize (pinit.c:924) +==43469== by 0xA46E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43469== by 0xA46E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43469== by 0x12243C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43469== by 0x11D413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43469== by 0x11F854: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43469== by 0x11F750: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43469== by 0x11FD63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43469== by 0x11BC15: main (TestNeumannStimulus.cpp:18) +==43469== +==43469== Open file descriptor 116: +==43469== +==43469== +==43469== Open file descriptor 113: +==43469== +==43469== +==43469== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNeumannStimulus_valgrind.txt +==43469== +==43469== +==43469== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43469== +==43469== +==43469== +==43469== HEAP SUMMARY: +==43469== in use at exit: 618,830 bytes in 8,248 blocks +==43469== total heap usage: 100,657 allocs, 92,409 frees, 1,350,844,315 bytes allocated +==43469== +==43469== LEAK SUMMARY: +==43469== definitely lost: 0 bytes in 0 blocks +==43469== indirectly lost: 0 bytes in 0 blocks +==43469== possibly lost: 0 bytes in 0 blocks +==43469== still reachable: 24 bytes in 2 blocks +==43469== suppressed: 618,806 bytes in 8,246 blocks +==43469== Reachable blocks (those to which a pointer was found) are not shown. +==43469== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43469== +==43469== For lists of detected and suppressed errors, rerun with: -s +==43469== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2024-10-14_17-51-53/TestNhsModelWithBackwardSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestNhsModelWithBackwardSolver_valgrind.txt new file mode 100644 index 000000000..68d82c733 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestNhsModelWithBackwardSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43259== Memcheck, a memory error detector +==43259== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43259== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43259== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestNhsModelWithBackwardSolver -malloc_debug -malloc_dump -memory_info +==43259== Parent PID: 23966 +==43259== +==43259== +==43259== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43259== Open file descriptor 12: +==43259== at 0x87B107D: pipe (pipe.c:29) +==43259== by 0x1433707D: ??? +==43259== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43259== by 0x9EAC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43259== by 0x9E45D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43259== by 0x8B3CD38: PetscInitialize (pinit.c:924) +==43259== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43259== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43259== by 0x118B18: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43259== by 0x114093: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43259== by 0x11647E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43259== by 0x116379: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43259== by 0x11698D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43259== by 0x112895: main (TestNhsModelWithBackwardSolver.cpp:18) +==43259== +==43259== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43259== at 0x87B5A1C: __open_nocancel (open64_nocancel.c:39) +==43259== by 0x8739BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43259== by 0x8419822: ??? +==43259== by 0x841996F: ??? +==43259== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43259== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43259== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43259== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43259== by 0x9EAC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43259== by 0x9E45D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43259== by 0x8B3CD38: PetscInitialize (pinit.c:924) +==43259== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43259== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43259== by 0x118B18: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43259== by 0x114093: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43259== by 0x11647E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43259== by 0x116379: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43259== by 0x11698D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43259== by 0x112895: main (TestNhsModelWithBackwardSolver.cpp:18) +==43259== +==43259== Open file descriptor 116: +==43259== +==43259== +==43259== Open file descriptor 113: +==43259== +==43259== +==43259== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNhsModelWithBackwardSolver_valgrind.txt +==43259== +==43259== +==43259== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43259== +==43259== +==43259== +==43259== HEAP SUMMARY: +==43259== in use at exit: 618,350 bytes in 8,238 blocks +==43259== total heap usage: 49,065 allocs, 40,827 frees, 1,338,539,604 bytes allocated +==43259== +==43259== LEAK SUMMARY: +==43259== definitely lost: 0 bytes in 0 blocks +==43259== indirectly lost: 0 bytes in 0 blocks +==43259== possibly lost: 0 bytes in 0 blocks +==43259== still reachable: 24 bytes in 2 blocks +==43259== suppressed: 618,326 bytes in 8,236 blocks +==43259== Reachable blocks (those to which a pointer was found) are not shown. +==43259== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43259== +==43259== For lists of detected and suppressed errors, rerun with: -s +==43259== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestNodeAttributes_valgrind.txt b/log-files/2024-10-14_17-51-53/TestNodeAttributes_valgrind.txt new file mode 100644 index 000000000..9028c8eba --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestNodeAttributes_valgrind.txt @@ -0,0 +1,73 @@ +==24421== Memcheck, a memory error detector +==24421== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24421== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24421== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNodeAttributes -malloc_debug -malloc_dump -memory_info +==24421== Parent PID: 23966 +==24421== +==24421== +==24421== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24421== Open file descriptor 12: +==24421== at 0x695907D: pipe (pipe.c:29) +==24421== by 0x100D407D: ??? +==24421== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24421== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24421== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24421== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24421== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24421== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24421== by 0x1396D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24421== by 0x134029: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24421== by 0x136E5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24421== by 0x136CFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24421== by 0x137391: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24421== by 0x132445: main (TestNodeAttributes.cpp:19) +==24421== +==24421== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24421== at 0x695DA1C: __open_nocancel (open64_nocancel.c:39) +==24421== by 0x68E1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24421== by 0x6597822: ??? +==24421== by 0x659796F: ??? +==24421== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24421== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24421== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24421== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24421== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24421== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24421== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24421== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24421== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24421== by 0x1396D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24421== by 0x134029: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24421== by 0x136E5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24421== by 0x136CFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24421== by 0x137391: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24421== by 0x132445: main (TestNodeAttributes.cpp:19) +==24421== +==24421== Open file descriptor 116: +==24421== +==24421== +==24421== Open file descriptor 113: +==24421== +==24421== +==24421== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeAttributes_valgrind.txt +==24421== +==24421== +==24421== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24421== +==24421== +==24421== +==24421== HEAP SUMMARY: +==24421== in use at exit: 618,238 bytes in 8,238 blocks +==24421== total heap usage: 47,488 allocs, 39,250 frees, 1,338,443,621 bytes allocated +==24421== +==24421== LEAK SUMMARY: +==24421== definitely lost: 0 bytes in 0 blocks +==24421== indirectly lost: 0 bytes in 0 blocks +==24421== possibly lost: 0 bytes in 0 blocks +==24421== still reachable: 24 bytes in 2 blocks +==24421== suppressed: 618,214 bytes in 8,236 blocks +==24421== Reachable blocks (those to which a pointer was found) are not shown. +==24421== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24421== +==24421== For lists of detected and suppressed errors, rerun with: -s +==24421== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestNodeBasedCellPopulationParallelMethods_valgrind.txt b/log-files/2024-10-14_17-51-53/TestNodeBasedCellPopulationParallelMethods_valgrind.txt new file mode 100644 index 000000000..e03e92d05 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestNodeBasedCellPopulationParallelMethods_valgrind.txt @@ -0,0 +1,73 @@ +==26071== Memcheck, a memory error detector +==26071== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26071== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26071== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationParallelMethods -malloc_debug -malloc_dump -memory_info +==26071== Parent PID: 23966 +==26071== +==26071== +==26071== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26071== Open file descriptor 12: +==26071== at 0xF8E807D: pipe (pipe.c:29) +==26071== by 0x196BC07D: ??? +==26071== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26071== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26071== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26071== by 0x10218D38: PetscInitialize (pinit.c:924) +==26071== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26071== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26071== by 0x13F4FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26071== by 0x13824D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26071== by 0x13AF0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26071== by 0x13ADAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26071== by 0x13B441: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26071== by 0x136675: main (TestNodeBasedCellPopulationParallelMethods.cpp:19) +==26071== +==26071== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26071== at 0xF8ECA1C: __open_nocancel (open64_nocancel.c:39) +==26071== by 0xF870BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26071== by 0xF13E822: ??? +==26071== by 0xF13E96F: ??? +==26071== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26071== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26071== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26071== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26071== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26071== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26071== by 0x10218D38: PetscInitialize (pinit.c:924) +==26071== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26071== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26071== by 0x13F4FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26071== by 0x13824D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26071== by 0x13AF0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26071== by 0x13ADAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26071== by 0x13B441: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26071== by 0x136675: main (TestNodeBasedCellPopulationParallelMethods.cpp:19) +==26071== +==26071== Open file descriptor 116: +==26071== +==26071== +==26071== Open file descriptor 113: +==26071== +==26071== +==26071== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationParallelMethods_valgrind.txt +==26071== +==26071== +==26071== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26071== +==26071== +==26071== +==26071== HEAP SUMMARY: +==26071== in use at exit: 618,366 bytes in 8,239 blocks +==26071== total heap usage: 60,292 allocs, 52,053 frees, 1,342,417,353 bytes allocated +==26071== +==26071== LEAK SUMMARY: +==26071== definitely lost: 0 bytes in 0 blocks +==26071== indirectly lost: 0 bytes in 0 blocks +==26071== possibly lost: 0 bytes in 0 blocks +==26071== still reachable: 56 bytes in 3 blocks +==26071== suppressed: 618,310 bytes in 8,236 blocks +==26071== Reachable blocks (those to which a pointer was found) are not shown. +==26071== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26071== +==26071== For lists of detected and suppressed errors, rerun with: -s +==26071== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt b/log-files/2024-10-14_17-51-53/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt new file mode 100644 index 000000000..fee65f30c --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt @@ -0,0 +1,73 @@ +==26072== Memcheck, a memory error detector +==26072== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26072== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26072== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithBuskeUpdate -malloc_debug -malloc_dump -memory_info +==26072== Parent PID: 23966 +==26072== +==26072== +==26072== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26072== Open file descriptor 12: +==26072== at 0xF84307D: pipe (pipe.c:29) +==26072== by 0x196BC07D: ??? +==26072== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26072== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26072== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26072== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26072== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26072== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26072== by 0x2CC5B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26072== by 0x2C3A9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26072== by 0x2C7EB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26072== by 0x2C7DB3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26072== by 0x2C83C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26072== by 0x2C2295: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) +==26072== +==26072== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26072== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==26072== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26072== by 0xF13E822: ??? +==26072== by 0xF13E96F: ??? +==26072== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26072== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26072== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26072== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26072== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26072== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26072== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26072== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26072== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26072== by 0x2CC5B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26072== by 0x2C3A9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26072== by 0x2C7EB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26072== by 0x2C7DB3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26072== by 0x2C83C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26072== by 0x2C2295: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) +==26072== +==26072== Open file descriptor 116: +==26072== +==26072== +==26072== Open file descriptor 113: +==26072== +==26072== +==26072== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt +==26072== +==26072== +==26072== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26072== +==26072== +==26072== +==26072== HEAP SUMMARY: +==26072== in use at exit: 618,366 bytes in 8,239 blocks +==26072== total heap usage: 57,008 allocs, 48,769 frees, 1,340,208,573 bytes allocated +==26072== +==26072== LEAK SUMMARY: +==26072== definitely lost: 0 bytes in 0 blocks +==26072== indirectly lost: 0 bytes in 0 blocks +==26072== possibly lost: 0 bytes in 0 blocks +==26072== still reachable: 56 bytes in 3 blocks +==26072== suppressed: 618,310 bytes in 8,236 blocks +==26072== Reachable blocks (those to which a pointer was found) are not shown. +==26072== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26072== +==26072== For lists of detected and suppressed errors, rerun with: -s +==26072== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestNodeBasedCellPopulationWithParticles_valgrind.txt b/log-files/2024-10-14_17-51-53/TestNodeBasedCellPopulationWithParticles_valgrind.txt new file mode 100644 index 000000000..4a3a5a250 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestNodeBasedCellPopulationWithParticles_valgrind.txt @@ -0,0 +1,73 @@ +==26075== Memcheck, a memory error detector +==26075== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26075== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26075== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithParticles -malloc_debug -malloc_dump -memory_info +==26075== Parent PID: 23966 +==26075== +==26075== +==26075== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26075== Open file descriptor 12: +==26075== at 0xF92C07D: pipe (pipe.c:29) +==26075== by 0x196BC07D: ??? +==26075== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26075== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26075== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26075== by 0x10218D38: PetscInitialize (pinit.c:924) +==26075== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26075== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26075== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26075== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26075== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26075== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26075== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26075== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) +==26075== +==26075== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26075== at 0xF930A1C: __open_nocancel (open64_nocancel.c:39) +==26075== by 0xF8B4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26075== by 0xF13E822: ??? +==26075== by 0xF13E96F: ??? +==26075== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26075== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26075== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26075== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26075== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26075== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26075== by 0x10218D38: PetscInitialize (pinit.c:924) +==26075== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26075== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26075== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26075== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26075== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26075== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26075== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26075== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) +==26075== +==26075== Open file descriptor 116: +==26075== +==26075== +==26075== Open file descriptor 113: +==26075== +==26075== +==26075== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithParticles_valgrind.txt +==26075== +==26075== +==26075== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26075== +==26075== +==26075== +==26075== HEAP SUMMARY: +==26075== in use at exit: 618,366 bytes in 8,239 blocks +==26075== total heap usage: 103,792 allocs, 95,553 frees, 1,346,202,863 bytes allocated +==26075== +==26075== LEAK SUMMARY: +==26075== definitely lost: 0 bytes in 0 blocks +==26075== indirectly lost: 0 bytes in 0 blocks +==26075== possibly lost: 0 bytes in 0 blocks +==26075== still reachable: 56 bytes in 3 blocks +==26075== suppressed: 618,310 bytes in 8,236 blocks +==26075== Reachable blocks (those to which a pointer was found) are not shown. +==26075== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26075== +==26075== For lists of detected and suppressed errors, rerun with: -s +==26075== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestNodeBasedCellPopulation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestNodeBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..bf94b2ea9 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestNodeBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26052== Memcheck, a memory error detector +==26052== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26052== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26052== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26052== Parent PID: 23966 +==26052== +==26052== +==26052== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26052== Open file descriptor 12: +==26052== at 0xF8D407D: pipe (pipe.c:29) +==26052== by 0x196BC07D: ??? +==26052== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26052== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26052== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26052== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26052== by 0xF1931D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26052== by 0xF193227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26052== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26052== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26052== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26052== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26052== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26052== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) +==26052== +==26052== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26052== at 0xF8D8A1C: __open_nocancel (open64_nocancel.c:39) +==26052== by 0xF85CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26052== by 0xF1CD822: ??? +==26052== by 0xF1CD96F: ??? +==26052== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26052== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26052== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26052== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26052== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26052== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26052== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26052== by 0xF1931D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26052== by 0xF193227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26052== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26052== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26052== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26052== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26052== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26052== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) +==26052== +==26052== Open file descriptor 116: +==26052== +==26052== +==26052== Open file descriptor 113: +==26052== +==26052== +==26052== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt +==26052== +==26052== +==26052== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26052== +==26052== +==26052== +==26052== HEAP SUMMARY: +==26052== in use at exit: 618,295 bytes in 8,235 blocks +==26052== total heap usage: 20,193,223 allocs, 20,184,988 frees, 2,562,971,095 bytes allocated +==26052== +==26052== LEAK SUMMARY: +==26052== definitely lost: 0 bytes in 0 blocks +==26052== indirectly lost: 0 bytes in 0 blocks +==26052== possibly lost: 0 bytes in 0 blocks +==26052== still reachable: 56 bytes in 3 blocks +==26052== suppressed: 618,239 bytes in 8,232 blocks +==26052== Reachable blocks (those to which a pointer was found) are not shown. +==26052== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26052== +==26052== For lists of detected and suppressed errors, rerun with: -s +==26052== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestNode_valgrind.txt b/log-files/2024-10-14_17-51-53/TestNode_valgrind.txt new file mode 100644 index 000000000..5731e7acc --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestNode_valgrind.txt @@ -0,0 +1,73 @@ +==24402== Memcheck, a memory error detector +==24402== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24402== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24402== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNode -malloc_debug -malloc_dump -memory_info +==24402== Parent PID: 23966 +==24402== +==24402== +==24402== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24402== Open file descriptor 12: +==24402== at 0x6C9E07D: pipe (pipe.c:29) +==24402== by 0x100D407D: ??? +==24402== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24402== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24402== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24402== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24402== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24402== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24402== by 0x13EF3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24402== by 0x139569: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24402== by 0x13C67E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24402== by 0x13C51E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24402== by 0x13CBB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24402== by 0x137985: main (TestNode.cpp:19) +==24402== +==24402== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24402== at 0x6CA2A1C: __open_nocancel (open64_nocancel.c:39) +==24402== by 0x6C26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24402== by 0x6597822: ??? +==24402== by 0x659796F: ??? +==24402== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24402== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24402== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24402== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24402== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24402== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24402== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24402== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24402== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24402== by 0x13EF3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24402== by 0x139569: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24402== by 0x13C67E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24402== by 0x13C51E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24402== by 0x13CBB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24402== by 0x137985: main (TestNode.cpp:19) +==24402== +==24402== Open file descriptor 116: +==24402== +==24402== +==24402== Open file descriptor 113: +==24402== +==24402== +==24402== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNode_valgrind.txt +==24402== +==24402== +==24402== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24402== +==24402== +==24402== +==24402== HEAP SUMMARY: +==24402== in use at exit: 618,238 bytes in 8,238 blocks +==24402== total heap usage: 47,494 allocs, 39,256 frees, 1,338,426,783 bytes allocated +==24402== +==24402== LEAK SUMMARY: +==24402== definitely lost: 0 bytes in 0 blocks +==24402== indirectly lost: 0 bytes in 0 blocks +==24402== possibly lost: 0 bytes in 0 blocks +==24402== still reachable: 24 bytes in 2 blocks +==24402== suppressed: 618,214 bytes in 8,236 blocks +==24402== Reachable blocks (those to which a pointer was found) are not shown. +==24402== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24402== +==24402== For lists of detected and suppressed errors, rerun with: -s +==24402== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-10-14_17-51-53/TestNodesOnlyMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestNodesOnlyMesh_valgrind.txt new file mode 100644 index 000000000..6e56e6d50 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24424== Memcheck, a memory error detector +==24424== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24424== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24424== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==24424== Parent PID: 23966 +==24424== +==24424== +==24424== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24424== Open file descriptor 12: +==24424== at 0x6D8507D: pipe (pipe.c:29) +==24424== by 0x100D407D: ??? +==24424== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24424== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24424== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24424== by 0x701FD38: PetscInitialize (pinit.c:924) +==24424== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24424== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24424== by 0x143026: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24424== by 0x13D7DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24424== by 0x14093C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24424== by 0x1407DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24424== by 0x140E73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24424== by 0x13BC05: main (TestNodesOnlyMesh.cpp:19) +==24424== +==24424== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24424== at 0x6D89A1C: __open_nocancel (open64_nocancel.c:39) +==24424== by 0x6D0DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24424== by 0x6597822: ??? +==24424== by 0x659796F: ??? +==24424== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24424== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24424== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24424== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24424== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24424== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24424== by 0x701FD38: PetscInitialize (pinit.c:924) +==24424== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24424== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24424== by 0x143026: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24424== by 0x13D7DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24424== by 0x14093C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24424== by 0x1407DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24424== by 0x140E73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24424== by 0x13BC05: main (TestNodesOnlyMesh.cpp:19) +==24424== +==24424== Open file descriptor 116: +==24424== +==24424== +==24424== Open file descriptor 113: +==24424== +==24424== +==24424== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodesOnlyMesh_valgrind.txt +==24424== +==24424== +==24424== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24424== +==24424== +==24424== +==24424== HEAP SUMMARY: +==24424== in use at exit: 618,238 bytes in 8,238 blocks +==24424== total heap usage: 359,547 allocs, 351,309 frees, 1,358,354,187 bytes allocated +==24424== +==24424== LEAK SUMMARY: +==24424== definitely lost: 0 bytes in 0 blocks +==24424== indirectly lost: 0 bytes in 0 blocks +==24424== possibly lost: 0 bytes in 0 blocks +==24424== still reachable: 24 bytes in 2 blocks +==24424== suppressed: 618,214 bytes in 8,236 blocks +==24424== Reachable blocks (those to which a pointer was found) are not shown. +==24424== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24424== +==24424== For lists of detected and suppressed errors, rerun with: -s +==24424== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-10-14_17-51-53/TestNonCachedTetrahedralMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestNonCachedTetrahedralMesh_valgrind.txt new file mode 100644 index 000000000..90abd3c94 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestNonCachedTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24431== Memcheck, a memory error detector +==24431== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24431== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24431== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNonCachedTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==24431== Parent PID: 23966 +==24431== +==24431== +==24431== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24431== Open file descriptor 12: +==24431== at 0x6C9E07D: pipe (pipe.c:29) +==24431== by 0x100D407D: ??? +==24431== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24431== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24431== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24431== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24431== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24431== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24431== by 0x121954: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24431== by 0x11CD9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24431== by 0x11F7E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24431== by 0x11F682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24431== by 0x11FD19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24431== by 0x11B1C5: main (TestNonCachedTetrahedralMesh.cpp:19) +==24431== +==24431== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24431== at 0x6CA2A1C: __open_nocancel (open64_nocancel.c:39) +==24431== by 0x6C26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24431== by 0x6597822: ??? +==24431== by 0x659796F: ??? +==24431== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24431== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24431== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24431== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24431== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24431== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24431== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24431== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24431== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24431== by 0x121954: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24431== by 0x11CD9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24431== by 0x11F7E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24431== by 0x11F682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24431== by 0x11FD19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24431== by 0x11B1C5: main (TestNonCachedTetrahedralMesh.cpp:19) +==24431== +==24431== Open file descriptor 116: +==24431== +==24431== +==24431== Open file descriptor 113: +==24431== +==24431== +==24431== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonCachedTetrahedralMesh_valgrind.txt +==24431== +==24431== +==24431== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24431== +==24431== +==24431== +==24431== HEAP SUMMARY: +==24431== in use at exit: 618,167 bytes in 8,234 blocks +==24431== total heap usage: 16,013,255 allocs, 16,005,021 frees, 3,441,282,887 bytes allocated +==24431== +==24431== LEAK SUMMARY: +==24431== definitely lost: 0 bytes in 0 blocks +==24431== indirectly lost: 0 bytes in 0 blocks +==24431== possibly lost: 0 bytes in 0 blocks +==24431== still reachable: 24 bytes in 2 blocks +==24431== suppressed: 618,143 bytes in 8,232 blocks +==24431== Reachable blocks (those to which a pointer was found) are not shown. +==24431== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24431== +==24431== For lists of detected and suppressed errors, rerun with: -s +==24431== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2024-10-14_17-51-53/TestNonlinearElasticityTools_valgrind.txt b/log-files/2024-10-14_17-51-53/TestNonlinearElasticityTools_valgrind.txt new file mode 100644 index 000000000..74780591c --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestNonlinearElasticityTools_valgrind.txt @@ -0,0 +1,73 @@ +==25263== Memcheck, a memory error detector +==25263== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25263== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25263== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestNonlinearElasticityTools -malloc_debug -malloc_dump -memory_info +==25263== Parent PID: 23966 +==25263== +==25263== +==25263== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25263== Open file descriptor 12: +==25263== at 0x6DDC07D: pipe (pipe.c:29) +==25263== by 0x106E707D: ??? +==25263== by 0xBFF44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25263== by 0x88AE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25263== by 0x8847D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25263== by 0x7413D38: PetscInitialize (pinit.c:924) +==25263== by 0x66DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25263== by 0x66DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25263== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25263== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25263== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25263== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25263== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25263== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) +==25263== +==25263== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25263== at 0x6DE0A1C: __open_nocancel (open64_nocancel.c:39) +==25263== by 0x6D64BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25263== by 0x6719822: ??? +==25263== by 0x671996F: ??? +==25263== by 0xC0996DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25263== by 0xC099938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25263== by 0xC04F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25263== by 0xBFF42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25263== by 0x88AE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25263== by 0x8847D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25263== by 0x7413D38: PetscInitialize (pinit.c:924) +==25263== by 0x66DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25263== by 0x66DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25263== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25263== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25263== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25263== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25263== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25263== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) +==25263== +==25263== Open file descriptor 116: +==25263== +==25263== +==25263== Open file descriptor 113: +==25263== +==25263== +==25263== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonlinearElasticityTools_valgrind.txt +==25263== +==25263== +==25263== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25263== +==25263== +==25263== +==25263== HEAP SUMMARY: +==25263== in use at exit: 618,286 bytes in 8,238 blocks +==25263== total heap usage: 57,771 allocs, 49,533 frees, 1,339,460,087 bytes allocated +==25263== +==25263== LEAK SUMMARY: +==25263== definitely lost: 0 bytes in 0 blocks +==25263== indirectly lost: 0 bytes in 0 blocks +==25263== possibly lost: 0 bytes in 0 blocks +==25263== still reachable: 24 bytes in 2 blocks +==25263== suppressed: 618,262 bytes in 8,236 blocks +==25263== Reachable blocks (those to which a pointer was found) are not shown. +==25263== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25263== +==25263== For lists of detected and suppressed errors, rerun with: -s +==25263== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestNonlinearSolvers_valgrind.txt b/log-files/2024-10-14_17-51-53/TestNonlinearSolvers_valgrind.txt new file mode 100644 index 000000000..c8951ae20 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestNonlinearSolvers_valgrind.txt @@ -0,0 +1,73 @@ +==24285== Memcheck, a memory error detector +==24285== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24285== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24285== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestNonlinearSolvers -malloc_debug -malloc_dump -memory_info +==24285== Parent PID: 23966 +==24285== +==24285== +==24285== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24285== Open file descriptor 12: +==24285== at 0x60C107D: pipe (pipe.c:29) +==24285== by 0xAF4107D: ??? +==24285== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24285== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24285== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24285== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24285== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24285== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24285== by 0x1143C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24285== by 0x10FB69: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24285== by 0x1123C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24285== by 0x112266: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24285== by 0x1128FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24285== by 0x10D915: main (TestNonlinearSolvers.cpp:19) +==24285== +==24285== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24285== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24285== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24285== by 0x5D41822: ??? +==24285== by 0x5D4196F: ??? +==24285== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24285== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24285== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24285== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24285== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24285== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24285== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24285== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24285== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24285== by 0x1143C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24285== by 0x10FB69: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24285== by 0x1123C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24285== by 0x112266: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24285== by 0x1128FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24285== by 0x10D915: main (TestNonlinearSolvers.cpp:19) +==24285== +==24285== Open file descriptor 116: +==24285== +==24285== +==24285== Open file descriptor 113: +==24285== +==24285== +==24285== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonlinearSolvers_valgrind.txt +==24285== +==24285== +==24285== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24285== +==24285== +==24285== +==24285== HEAP SUMMARY: +==24285== in use at exit: 617,886 bytes in 8,238 blocks +==24285== total heap usage: 101,428 allocs, 93,190 frees, 1,348,558,157 bytes allocated +==24285== +==24285== LEAK SUMMARY: +==24285== definitely lost: 0 bytes in 0 blocks +==24285== indirectly lost: 0 bytes in 0 blocks +==24285== possibly lost: 0 bytes in 0 blocks +==24285== still reachable: 24 bytes in 2 blocks +==24285== suppressed: 617,862 bytes in 8,236 blocks +==24285== Reachable blocks (those to which a pointer was found) are not shown. +==24285== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24285== +==24285== For lists of detected and suppressed errors, rerun with: -s +==24285== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestNormallyDistributedTargetAreaModifier_valgrind.txt b/log-files/2024-10-14_17-51-53/TestNormallyDistributedTargetAreaModifier_valgrind.txt new file mode 100644 index 000000000..ce4a94a00 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestNormallyDistributedTargetAreaModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26413== Memcheck, a memory error detector +==26413== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26413== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26413== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNormallyDistributedTargetAreaModifier -malloc_debug -malloc_dump -memory_info +==26413== Parent PID: 23966 +==26413== +==26413== +==26413== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26413== Open file descriptor 12: +==26413== at 0x10CFA07D: pipe (pipe.c:29) +==26413== by 0x196BC07D: ??? +==26413== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26413== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26413== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26413== by 0xF292D38: PetscInitialize (pinit.c:924) +==26413== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26413== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26413== by 0x139D83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26413== by 0x1324FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26413== by 0x1357FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26413== by 0x13569C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26413== by 0x135D33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26413== by 0x130925: main (TestNormallyDistributedTargetAreaModifier.cpp:19) +==26413== +==26413== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26413== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==26413== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26413== by 0xF13E822: ??? +==26413== by 0xF13E96F: ??? +==26413== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26413== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26413== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26413== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26413== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26413== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26413== by 0xF292D38: PetscInitialize (pinit.c:924) +==26413== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26413== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26413== by 0x139D83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26413== by 0x1324FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26413== by 0x1357FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26413== by 0x13569C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26413== by 0x135D33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26413== by 0x130925: main (TestNormallyDistributedTargetAreaModifier.cpp:19) +==26413== +==26413== Open file descriptor 116: +==26413== +==26413== +==26413== Open file descriptor 113: +==26413== +==26413== +==26413== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNormallyDistributedTargetAreaModifier_valgrind.txt +==26413== +==26413== +==26413== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26413== +==26413== +==26413== +==26413== HEAP SUMMARY: +==26413== in use at exit: 618,366 bytes in 8,239 blocks +==26413== total heap usage: 581,795 allocs, 573,556 frees, 1,435,424,940 bytes allocated +==26413== +==26413== LEAK SUMMARY: +==26413== definitely lost: 0 bytes in 0 blocks +==26413== indirectly lost: 0 bytes in 0 blocks +==26413== possibly lost: 0 bytes in 0 blocks +==26413== still reachable: 56 bytes in 3 blocks +==26413== suppressed: 618,310 bytes in 8,236 blocks +==26413== Reachable blocks (those to which a pointer was found) are not shown. +==26413== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26413== +==26413== For lists of detected and suppressed errors, rerun with: -s +==26413== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestNumericFileComparison_valgrind.txt b/log-files/2024-10-14_17-51-53/TestNumericFileComparison_valgrind.txt new file mode 100644 index 000000000..2b1fa4626 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestNumericFileComparison_valgrind.txt @@ -0,0 +1,73 @@ +==24116== Memcheck, a memory error detector +==24116== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24116== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24116== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestNumericFileComparison -malloc_debug -malloc_dump -memory_info +==24116== Parent PID: 23966 +==24116== +==24116== +==24116== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24116== Open file descriptor 12: +==24116== at 0x4CB207D: pipe (pipe.c:29) +==24116== by 0xAEAD07D: ??? +==24116== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24116== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24116== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24116== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24116== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24116== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24116== by 0x115A5C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24116== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24116== by 0x112A1A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24116== by 0x112915: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24116== by 0x112F29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24116== by 0x10EA95: main (TestNumericFileComparison.cpp:18) +==24116== +==24116== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24116== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24116== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24116== by 0x4934822: ??? +==24116== by 0x493496F: ??? +==24116== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24116== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24116== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24116== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24116== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24116== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24116== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24116== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24116== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24116== by 0x115A5C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24116== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24116== by 0x112A1A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24116== by 0x112915: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24116== by 0x112F29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24116== by 0x10EA95: main (TestNumericFileComparison.cpp:18) +==24116== +==24116== Open file descriptor 116: +==24116== +==24116== +==24116== Open file descriptor 113: +==24116== +==24116== +==24116== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNumericFileComparison_valgrind.txt +==24116== +==24116== +==24116== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24116== +==24116== +==24116== +==24116== HEAP SUMMARY: +==24116== in use at exit: 617,870 bytes in 8,238 blocks +==24116== total heap usage: 45,728 allocs, 37,490 frees, 1,338,466,198 bytes allocated +==24116== +==24116== LEAK SUMMARY: +==24116== definitely lost: 0 bytes in 0 blocks +==24116== indirectly lost: 0 bytes in 0 blocks +==24116== possibly lost: 0 bytes in 0 blocks +==24116== still reachable: 24 bytes in 2 blocks +==24116== suppressed: 617,846 bytes in 8,236 blocks +==24116== Reachable blocks (those to which a pointer was found) are not shown. +==24116== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24116== +==24116== For lists of detected and suppressed errors, rerun with: -s +==24116== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestNumericalMethods_valgrind.txt b/log-files/2024-10-14_17-51-53/TestNumericalMethods_valgrind.txt new file mode 100644 index 000000000..65bc7f211 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestNumericalMethods_valgrind.txt @@ -0,0 +1,73 @@ +==26349== Memcheck, a memory error detector +==26349== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26349== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26349== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNumericalMethods -malloc_debug -malloc_dump -memory_info +==26349== Parent PID: 23966 +==26349== +==26349== +==26349== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26349== Open file descriptor 12: +==26349== at 0xF8E807D: pipe (pipe.c:29) +==26349== by 0x196BC07D: ??? +==26349== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26349== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26349== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26349== by 0x10218D38: PetscInitialize (pinit.c:924) +==26349== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26349== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26349== by 0x13A648: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26349== by 0x13504D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26349== by 0x137DD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26349== by 0x137C74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26349== by 0x13830B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26349== by 0x133475: main (TestNumericalMethods.cpp:19) +==26349== +==26349== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26349== at 0xF8ECA1C: __open_nocancel (open64_nocancel.c:39) +==26349== by 0xF870BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26349== by 0xF13E822: ??? +==26349== by 0xF13E96F: ??? +==26349== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26349== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26349== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26349== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26349== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26349== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26349== by 0x10218D38: PetscInitialize (pinit.c:924) +==26349== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26349== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26349== by 0x13A648: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26349== by 0x13504D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26349== by 0x137DD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26349== by 0x137C74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26349== by 0x13830B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26349== by 0x133475: main (TestNumericalMethods.cpp:19) +==26349== +==26349== Open file descriptor 116: +==26349== +==26349== +==26349== Open file descriptor 113: +==26349== +==26349== +==26349== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNumericalMethods_valgrind.txt +==26349== +==26349== +==26349== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26349== +==26349== +==26349== +==26349== HEAP SUMMARY: +==26349== in use at exit: 618,366 bytes in 8,239 blocks +==26349== total heap usage: 69,197 allocs, 60,958 frees, 1,341,833,709 bytes allocated +==26349== +==26349== LEAK SUMMARY: +==26349== definitely lost: 0 bytes in 0 blocks +==26349== indirectly lost: 0 bytes in 0 blocks +==26349== possibly lost: 0 bytes in 0 blocks +==26349== still reachable: 56 bytes in 3 blocks +==26349== suppressed: 618,310 bytes in 8,236 blocks +==26349== Reachable blocks (those to which a pointer was found) are not shown. +==26349== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26349== +==26349== For lists of detected and suppressed errors, rerun with: -s +==26349== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestObjectCommunicator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestObjectCommunicator_valgrind.txt new file mode 100644 index 000000000..a2042ee82 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestObjectCommunicator_valgrind.txt @@ -0,0 +1,73 @@ +==24117== Memcheck, a memory error detector +==24117== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24117== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24117== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestObjectCommunicator -malloc_debug -malloc_dump -memory_info +==24117== Parent PID: 23966 +==24117== +==24117== +==24117== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24117== Open file descriptor 12: +==24117== at 0x61AB07D: pipe (pipe.c:29) +==24117== by 0xAEAD07D: ??? +==24117== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24117== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24117== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24117== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24117== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24117== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24117== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24117== by 0x11C051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24117== by 0x11F5CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24117== by 0x11F46C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24117== by 0x11FB03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24117== by 0x11A325: main (TestObjectCommunicator.cpp:19) +==24117== +==24117== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24117== at 0x61AFA1C: __open_nocancel (open64_nocancel.c:39) +==24117== by 0x6133BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24117== by 0x4934822: ??? +==24117== by 0x493496F: ??? +==24117== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24117== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24117== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24117== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24117== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24117== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24117== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24117== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24117== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24117== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24117== by 0x11C051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24117== by 0x11F5CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24117== by 0x11F46C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24117== by 0x11FB03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24117== by 0x11A325: main (TestObjectCommunicator.cpp:19) +==24117== +==24117== Open file descriptor 116: +==24117== +==24117== +==24117== Open file descriptor 113: +==24117== +==24117== +==24117== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestObjectCommunicator_valgrind.txt +==24117== +==24117== +==24117== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24117== +==24117== +==24117== +==24117== HEAP SUMMARY: +==24117== in use at exit: 617,870 bytes in 8,238 blocks +==24117== total heap usage: 44,950 allocs, 36,712 frees, 1,338,162,339 bytes allocated +==24117== +==24117== LEAK SUMMARY: +==24117== definitely lost: 0 bytes in 0 blocks +==24117== indirectly lost: 0 bytes in 0 blocks +==24117== possibly lost: 0 bytes in 0 blocks +==24117== still reachable: 24 bytes in 2 blocks +==24117== suppressed: 617,846 bytes in 8,236 blocks +==24117== Reachable blocks (those to which a pointer was found) are not shown. +==24117== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24117== +==24117== For lists of detected and suppressed errors, rerun with: -s +==24117== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestObsoleteBoxCollection_valgrind.txt b/log-files/2024-10-14_17-51-53/TestObsoleteBoxCollection_valgrind.txt new file mode 100644 index 000000000..933cff0c4 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestObsoleteBoxCollection_valgrind.txt @@ -0,0 +1,73 @@ +==24661== Memcheck, a memory error detector +==24661== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24661== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24661== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestObsoleteBoxCollection -malloc_debug -malloc_dump -memory_info +==24661== Parent PID: 23966 +==24661== +==24661== +==24661== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24661== Open file descriptor 12: +==24661== at 0x6D4307D: pipe (pipe.c:29) +==24661== by 0x100D407D: ??? +==24661== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24661== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24661== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24661== by 0x701FD38: PetscInitialize (pinit.c:924) +==24661== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24661== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24661== by 0x153352: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24661== by 0x14DF8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24661== by 0x150FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24661== by 0x150E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24661== by 0x1514D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24661== by 0x14C3B5: main (TestObsoleteBoxCollection.cpp:19) +==24661== +==24661== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24661== at 0x6D47A1C: __open_nocancel (open64_nocancel.c:39) +==24661== by 0x6CCBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24661== by 0x6597822: ??? +==24661== by 0x659796F: ??? +==24661== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24661== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24661== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24661== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24661== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24661== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24661== by 0x701FD38: PetscInitialize (pinit.c:924) +==24661== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24661== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24661== by 0x153352: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24661== by 0x14DF8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24661== by 0x150FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24661== by 0x150E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24661== by 0x1514D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24661== by 0x14C3B5: main (TestObsoleteBoxCollection.cpp:19) +==24661== +==24661== Open file descriptor 116: +==24661== +==24661== +==24661== Open file descriptor 113: +==24661== +==24661== +==24661== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestObsoleteBoxCollection_valgrind.txt +==24661== +==24661== +==24661== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24661== +==24661== +==24661== +==24661== HEAP SUMMARY: +==24661== in use at exit: 618,238 bytes in 8,238 blocks +==24661== total heap usage: 276,946 allocs, 268,708 frees, 1,447,218,498 bytes allocated +==24661== +==24661== LEAK SUMMARY: +==24661== definitely lost: 0 bytes in 0 blocks +==24661== indirectly lost: 0 bytes in 0 blocks +==24661== possibly lost: 0 bytes in 0 blocks +==24661== still reachable: 24 bytes in 2 blocks +==24661== suppressed: 618,214 bytes in 8,236 blocks +==24661== Reachable blocks (those to which a pointer was found) are not shown. +==24661== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24661== +==24661== For lists of detected and suppressed errors, rerun with: -s +==24661== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt new file mode 100644 index 000000000..52fbd95af --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40219== Memcheck, a memory error detector +==40219== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40219== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40219== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info +==40219== Parent PID: 23966 +==40219== +==40219== +==40219== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40219== Open file descriptor 12: +==40219== at 0x10B9907D: pipe (pipe.c:29) +==40219== by 0x1B37E07D: ??? +==40219== by 0x155194CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40219== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40219== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40219== by 0xF131D38: PetscInitialize (pinit.c:924) +==40219== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40219== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40219== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40219== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40219== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40219== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40219== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40219== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) +==40219== +==40219== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40219== at 0x10B9DA1C: __open_nocancel (open64_nocancel.c:39) +==40219== by 0x10B21BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40219== by 0xEFDD822: ??? +==40219== by 0xEFDD96F: ??? +==40219== by 0x155BE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40219== by 0x155BE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40219== by 0x15574922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40219== by 0x155192DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40219== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40219== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40219== by 0xF131D38: PetscInitialize (pinit.c:924) +==40219== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40219== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40219== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40219== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40219== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40219== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40219== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40219== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) +==40219== +==40219== Open file descriptor 116: +==40219== +==40219== +==40219== Open file descriptor 113: +==40219== +==40219== +==40219== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt +==40219== +==40219== +==40219== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40219== +==40219== +==40219== +==40219== HEAP SUMMARY: +==40219== in use at exit: 618,446 bytes in 8,240 blocks +==40219== total heap usage: 862,014 allocs, 853,774 frees, 1,460,910,336 bytes allocated +==40219== +==40219== LEAK SUMMARY: +==40219== definitely lost: 0 bytes in 0 blocks +==40219== indirectly lost: 0 bytes in 0 blocks +==40219== possibly lost: 0 bytes in 0 blocks +==40219== still reachable: 120 bytes in 4 blocks +==40219== suppressed: 618,326 bytes in 8,236 blocks +==40219== Reachable blocks (those to which a pointer was found) are not shown. +==40219== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40219== +==40219== For lists of detected and suppressed errors, rerun with: -s +==40219== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-10-14_17-51-53/TestOdeBasedCellCycleModels_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOdeBasedCellCycleModels_valgrind.txt new file mode 100644 index 000000000..f55affae7 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOdeBasedCellCycleModels_valgrind.txt @@ -0,0 +1,73 @@ +==25388== Memcheck, a memory error detector +==25388== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25388== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25388== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeBasedCellCycleModels -malloc_debug -malloc_dump -memory_info +==25388== Parent PID: 23966 +==25388== +==25388== +==25388== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25388== Open file descriptor 12: +==25388== at 0xEF9407D: pipe (pipe.c:29) +==25388== by 0x196BD07D: ??? +==25388== by 0x13C594CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25388== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25388== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25388== by 0xD871D38: PetscInitialize (pinit.c:924) +==25388== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25388== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25388== by 0x1361D7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25388== by 0x12EF6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25388== by 0x131C2A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25388== by 0x131ACA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25388== by 0x132161: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25388== by 0x12B8A5: main (TestOdeBasedCellCycleModels.cpp:19) +==25388== +==25388== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25388== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25388== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25388== by 0xD71D822: ??? +==25388== by 0xD71D96F: ??? +==25388== by 0x13CFE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25388== by 0x13CFE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25388== by 0x13CB4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25388== by 0x13C592DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25388== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25388== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25388== by 0xD871D38: PetscInitialize (pinit.c:924) +==25388== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25388== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25388== by 0x1361D7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25388== by 0x12EF6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25388== by 0x131C2A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25388== by 0x131ACA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25388== by 0x132161: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25388== by 0x12B8A5: main (TestOdeBasedCellCycleModels.cpp:19) +==25388== +==25388== Open file descriptor 116: +==25388== +==25388== +==25388== Open file descriptor 113: +==25388== +==25388== +==25388== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModels_valgrind.txt +==25388== +==25388== +==25388== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25388== +==25388== +==25388== +==25388== HEAP SUMMARY: +==25388== in use at exit: 618,311 bytes in 8,236 blocks +==25388== total heap usage: 4,179,303 allocs, 4,171,067 frees, 1,770,075,803 bytes allocated +==25388== +==25388== LEAK SUMMARY: +==25388== definitely lost: 0 bytes in 0 blocks +==25388== indirectly lost: 0 bytes in 0 blocks +==25388== possibly lost: 0 bytes in 0 blocks +==25388== still reachable: 72 bytes in 4 blocks +==25388== suppressed: 618,239 bytes in 8,232 blocks +==25388== Reachable blocks (those to which a pointer was found) are not shown. +==25388== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25388== +==25388== For lists of detected and suppressed errors, rerun with: -s +==25388== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestOdeBasedSrnModels_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOdeBasedSrnModels_valgrind.txt new file mode 100644 index 000000000..856616152 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOdeBasedSrnModels_valgrind.txt @@ -0,0 +1,73 @@ +==25397== Memcheck, a memory error detector +==25397== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25397== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25397== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeBasedSrnModels -malloc_debug -malloc_dump -memory_info +==25397== Parent PID: 23966 +==25397== +==25397== +==25397== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25397== Open file descriptor 12: +==25397== at 0xED5007D: pipe (pipe.c:29) +==25397== by 0x196BD07D: ??? +==25397== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25397== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25397== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25397== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25397== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25397== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25397== by 0x12E3B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25397== by 0x1272FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25397== by 0x129E8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25397== by 0x129D2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25397== by 0x12A3C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25397== by 0x125725: main (TestOdeBasedSrnModels.cpp:19) +==25397== +==25397== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25397== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25397== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25397== by 0xD4D9822: ??? +==25397== by 0xD4D996F: ??? +==25397== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25397== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25397== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25397== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25397== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25397== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25397== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25397== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25397== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25397== by 0x12E3B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25397== by 0x1272FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25397== by 0x129E8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25397== by 0x129D2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25397== by 0x12A3C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25397== by 0x125725: main (TestOdeBasedSrnModels.cpp:19) +==25397== +==25397== Open file descriptor 116: +==25397== +==25397== +==25397== Open file descriptor 113: +==25397== +==25397== +==25397== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedSrnModels_valgrind.txt +==25397== +==25397== +==25397== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25397== +==25397== +==25397== +==25397== HEAP SUMMARY: +==25397== in use at exit: 618,382 bytes in 8,240 blocks +==25397== total heap usage: 57,245 allocs, 49,005 frees, 1,339,479,587 bytes allocated +==25397== +==25397== LEAK SUMMARY: +==25397== definitely lost: 0 bytes in 0 blocks +==25397== indirectly lost: 0 bytes in 0 blocks +==25397== possibly lost: 0 bytes in 0 blocks +==25397== still reachable: 72 bytes in 4 blocks +==25397== suppressed: 618,310 bytes in 8,236 blocks +==25397== Reachable blocks (those to which a pointer was found) are not shown. +==25397== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25397== +==25397== For lists of detected and suppressed errors, rerun with: -s +==25397== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestOdeLinearSystemSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOdeLinearSystemSolver_valgrind.txt new file mode 100644 index 000000000..5b56c5b7f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOdeLinearSystemSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25699== Memcheck, a memory error detector +==25699== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25699== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25699== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeLinearSystemSolver -malloc_debug -malloc_dump -memory_info +==25699== Parent PID: 23966 +==25699== +==25699== +==25699== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25699== Open file descriptor 12: +==25699== at 0xEC6607D: pipe (pipe.c:29) +==25699== by 0x196BD07D: ??? +==25699== by 0x14C8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25699== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25699== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25699== by 0xD659D38: PetscInitialize (pinit.c:924) +==25699== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25699== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25699== by 0x112010: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25699== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25699== by 0x1100A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25699== by 0x10FFA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25699== by 0x1105B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25699== by 0x10C555: main (TestOdeLinearSystemSolver.cpp:18) +==25699== +==25699== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25699== at 0xEC6AA1C: __open_nocancel (open64_nocancel.c:39) +==25699== by 0xEBEEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25699== by 0xE8E8822: ??? +==25699== by 0xE8E896F: ??? +==25699== by 0x14D306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25699== by 0x14D30938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25699== by 0x14CE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25699== by 0x14C8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25699== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25699== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25699== by 0xD659D38: PetscInitialize (pinit.c:924) +==25699== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25699== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25699== by 0x112010: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25699== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25699== by 0x1100A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25699== by 0x10FFA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25699== by 0x1105B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25699== by 0x10C555: main (TestOdeLinearSystemSolver.cpp:18) +==25699== +==25699== Open file descriptor 116: +==25699== +==25699== +==25699== Open file descriptor 113: +==25699== +==25699== +==25699== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeLinearSystemSolver_valgrind.txt +==25699== +==25699== +==25699== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25699== +==25699== +==25699== +==25699== HEAP SUMMARY: +==25699== in use at exit: 618,334 bytes in 8,238 blocks +==25699== total heap usage: 55,511 allocs, 47,273 frees, 1,339,626,622 bytes allocated +==25699== +==25699== LEAK SUMMARY: +==25699== definitely lost: 0 bytes in 0 blocks +==25699== indirectly lost: 0 bytes in 0 blocks +==25699== possibly lost: 0 bytes in 0 blocks +==25699== still reachable: 24 bytes in 2 blocks +==25699== suppressed: 618,310 bytes in 8,236 blocks +==25699== Reachable blocks (those to which a pointer was found) are not shown. +==25699== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25699== +==25699== For lists of detected and suppressed errors, rerun with: -s +==25699== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestOffLatticeCryptProjectionSimulation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOffLatticeCryptProjectionSimulation_valgrind.txt new file mode 100644 index 000000000..9096d33e1 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOffLatticeCryptProjectionSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==40462== Memcheck, a memory error detector +==40462== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40462== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40462== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOffLatticeCryptProjectionSimulation -malloc_debug -malloc_dump -memory_info +==40462== Parent PID: 23966 +==40462== +==40462== +==40462== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40462== Open file descriptor 12: +==40462== at 0x1265F07D: pipe (pipe.c:29) +==40462== by 0x1B37E07D: ??? +==40462== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40462== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40462== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40462== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40462== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40462== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40462== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40462== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40462== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40462== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40462== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40462== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) +==40462== +==40462== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40462== at 0x12663A1C: __open_nocancel (open64_nocancel.c:39) +==40462== by 0x125E7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40462== by 0x11D7C822: ??? +==40462== by 0x11D7C96F: ??? +==40462== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40462== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40462== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40462== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40462== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40462== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40462== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40462== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40462== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40462== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40462== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40462== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40462== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40462== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40462== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) +==40462== +==40462== Open file descriptor 116: +==40462== +==40462== +==40462== Open file descriptor 113: +==40462== +==40462== +==40462== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeCryptProjectionSimulation_valgrind.txt +==40462== +==40462== +==40462== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40462== +==40462== +==40462== +==40462== HEAP SUMMARY: +==40462== in use at exit: 618,382 bytes in 8,239 blocks +==40462== total heap usage: 1,347,981 allocs, 1,339,742 frees, 1,453,033,788 bytes allocated +==40462== +==40462== LEAK SUMMARY: +==40462== definitely lost: 0 bytes in 0 blocks +==40462== indirectly lost: 0 bytes in 0 blocks +==40462== possibly lost: 0 bytes in 0 blocks +==40462== still reachable: 56 bytes in 3 blocks +==40462== suppressed: 618,326 bytes in 8,236 blocks +==40462== Reachable blocks (those to which a pointer was found) are not shown. +==40462== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40462== +==40462== For lists of detected and suppressed errors, rerun with: -s +==40462== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestOffLatticeRandomFieldGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOffLatticeRandomFieldGenerator_valgrind.txt new file mode 100644 index 000000000..2feb4ba90 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOffLatticeRandomFieldGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24862== Memcheck, a memory error detector +==24862== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24862== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24862== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestOffLatticeRandomFieldGenerator -malloc_debug -malloc_dump -memory_info +==24862== Parent PID: 23966 +==24862== +==24862== +==24862== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24862== Open file descriptor 12: +==24862== at 0x7E5B07D: pipe (pipe.c:29) +==24862== by 0x100D407D: ??? +==24862== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24862== by 0x7AAA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24862== by 0x7A43D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24862== by 0x6717D38: PetscInitialize (pinit.c:924) +==24862== by 0x65EC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24862== by 0x65EC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24862== by 0x1256B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24862== by 0x121073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24862== by 0x123452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24862== by 0x12334D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24862== by 0x123961: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24862== by 0x11F875: main (TestOffLatticeRandomFieldGenerator.cpp:18) +==24862== +==24862== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24862== at 0x7E5FA1C: __open_nocancel (open64_nocancel.c:39) +==24862== by 0x7DE3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24862== by 0x79A6822: ??? +==24862== by 0x79A696F: ??? +==24862== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24862== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24862== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24862== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24862== by 0x7AAA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24862== by 0x7A43D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24862== by 0x6717D38: PetscInitialize (pinit.c:924) +==24862== by 0x65EC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24862== by 0x65EC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24862== by 0x1256B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24862== by 0x121073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24862== by 0x123452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24862== by 0x12334D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24862== by 0x123961: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24862== by 0x11F875: main (TestOffLatticeRandomFieldGenerator.cpp:18) +==24862== +==24862== Open file descriptor 116: +==24862== +==24862== +==24862== Open file descriptor 113: +==24862== +==24862== +==24862== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeRandomFieldGenerator_valgrind.txt +==24862== +==24862== +==24862== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24862== +==24862== +==24862== +==24862== HEAP SUMMARY: +==24862== in use at exit: 620,790 bytes in 8,239 blocks +==24862== total heap usage: 515,645 allocs, 507,406 frees, 1,362,756,563 bytes allocated +==24862== +==24862== LEAK SUMMARY: +==24862== definitely lost: 0 bytes in 0 blocks +==24862== indirectly lost: 0 bytes in 0 blocks +==24862== possibly lost: 0 bytes in 0 blocks +==24862== still reachable: 2,576 bytes in 3 blocks +==24862== suppressed: 618,214 bytes in 8,236 blocks +==24862== Reachable blocks (those to which a pointer was found) are not shown. +==24862== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24862== +==24862== For lists of detected and suppressed errors, rerun with: -s +==24862== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestOffLatticeSimulation3d_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOffLatticeSimulation3d_valgrind.txt new file mode 100644 index 000000000..b38ee97b5 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOffLatticeSimulation3d_valgrind.txt @@ -0,0 +1,73 @@ +==26464== Memcheck, a memory error detector +==26464== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26464== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26464== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info +==26464== Parent PID: 23966 +==26464== +==26464== +==26464== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26464== Open file descriptor 12: +==26464== at 0x10DE107D: pipe (pipe.c:29) +==26464== by 0x196BC07D: ??? +==26464== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26464== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26464== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26464== by 0xF292D38: PetscInitialize (pinit.c:924) +==26464== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26464== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26464== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26464== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26464== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26464== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26464== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26464== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) +==26464== +==26464== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26464== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==26464== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26464== by 0xF13E822: ??? +==26464== by 0xF13E96F: ??? +==26464== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26464== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26464== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26464== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26464== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26464== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26464== by 0xF292D38: PetscInitialize (pinit.c:924) +==26464== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26464== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26464== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26464== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26464== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26464== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26464== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26464== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) +==26464== +==26464== Open file descriptor 116: +==26464== +==26464== +==26464== Open file descriptor 113: +==26464== +==26464== +==26464== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt +==26464== +==26464== +==26464== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26464== +==26464== +==26464== +==26464== HEAP SUMMARY: +==26464== in use at exit: 618,366 bytes in 8,239 blocks +==26464== total heap usage: 868,212 allocs, 859,973 frees, 1,504,053,146 bytes allocated +==26464== +==26464== LEAK SUMMARY: +==26464== definitely lost: 0 bytes in 0 blocks +==26464== indirectly lost: 0 bytes in 0 blocks +==26464== possibly lost: 0 bytes in 0 blocks +==26464== still reachable: 56 bytes in 3 blocks +==26464== suppressed: 618,310 bytes in 8,236 blocks +==26464== Reachable blocks (those to which a pointer was found) are not shown. +==26464== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26464== +==26464== For lists of detected and suppressed errors, rerun with: -s +==26464== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestOffLatticeSimulationWithBuskeForces_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOffLatticeSimulationWithBuskeForces_valgrind.txt new file mode 100644 index 000000000..976eb60b3 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOffLatticeSimulationWithBuskeForces_valgrind.txt @@ -0,0 +1,73 @@ +==26533== Memcheck, a memory error detector +==26533== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26533== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26533== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithBuskeForces -malloc_debug -malloc_dump -memory_info +==26533== Parent PID: 23966 +==26533== +==26533== +==26533== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26533== Open file descriptor 12: +==26533== at 0xF8E807D: pipe (pipe.c:29) +==26533== by 0x196BC07D: ??? +==26533== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26533== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26533== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26533== by 0x10218D38: PetscInitialize (pinit.c:924) +==26533== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26533== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26533== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26533== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26533== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26533== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26533== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26533== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) +==26533== +==26533== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26533== at 0xF8ECA1C: __open_nocancel (open64_nocancel.c:39) +==26533== by 0xF870BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26533== by 0xF13E822: ??? +==26533== by 0xF13E96F: ??? +==26533== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26533== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26533== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26533== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26533== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26533== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26533== by 0x10218D38: PetscInitialize (pinit.c:924) +==26533== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26533== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26533== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26533== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26533== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26533== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26533== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26533== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) +==26533== +==26533== Open file descriptor 116: +==26533== +==26533== +==26533== Open file descriptor 113: +==26533== +==26533== +==26533== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithBuskeForces_valgrind.txt +==26533== +==26533== +==26533== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26533== +==26533== +==26533== +==26533== HEAP SUMMARY: +==26533== in use at exit: 618,295 bytes in 8,235 blocks +==26533== total heap usage: 3,734,021 allocs, 3,725,786 frees, 4,478,527,866 bytes allocated +==26533== +==26533== LEAK SUMMARY: +==26533== definitely lost: 0 bytes in 0 blocks +==26533== indirectly lost: 0 bytes in 0 blocks +==26533== possibly lost: 0 bytes in 0 blocks +==26533== still reachable: 56 bytes in 3 blocks +==26533== suppressed: 618,239 bytes in 8,232 blocks +==26533== Reachable blocks (those to which a pointer was found) are not shown. +==26533== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26533== +==26533== For lists of detected and suppressed errors, rerun with: -s +==26533== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt new file mode 100644 index 000000000..aeb24741a --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt @@ -0,0 +1,73 @@ +==26796== Memcheck, a memory error detector +==26796== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26796== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26796== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info +==26796== Parent PID: 23966 +==26796== +==26796== +==26796== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26796== Open file descriptor 12: +==26796== at 0xF8E807D: pipe (pipe.c:29) +==26796== by 0x196BC07D: ??? +==26796== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26796== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26796== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26796== by 0x10218D38: PetscInitialize (pinit.c:924) +==26796== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26796== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26796== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26796== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26796== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26796== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26796== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26796== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) +==26796== +==26796== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26796== at 0xF8ECA1C: __open_nocancel (open64_nocancel.c:39) +==26796== by 0xF870BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26796== by 0xF13E822: ??? +==26796== by 0xF13E96F: ??? +==26796== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26796== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26796== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26796== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26796== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26796== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26796== by 0x10218D38: PetscInitialize (pinit.c:924) +==26796== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26796== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26796== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26796== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26796== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26796== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26796== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26796== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) +==26796== +==26796== Open file descriptor 116: +==26796== +==26796== +==26796== Open file descriptor 113: +==26796== +==26796== +==26796== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt +==26796== +==26796== +==26796== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26796== +==26796== +==26796== +==26796== HEAP SUMMARY: +==26796== in use at exit: 618,295 bytes in 8,235 blocks +==26796== total heap usage: 7,117,451 allocs, 7,109,216 frees, 8,996,565,900 bytes allocated +==26796== +==26796== LEAK SUMMARY: +==26796== definitely lost: 0 bytes in 0 blocks +==26796== indirectly lost: 0 bytes in 0 blocks +==26796== possibly lost: 0 bytes in 0 blocks +==26796== still reachable: 56 bytes in 3 blocks +==26796== suppressed: 618,239 bytes in 8,232 blocks +==26796== Reachable blocks (those to which a pointer was found) are not shown. +==26796== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26796== +==26796== For lists of detected and suppressed errors, rerun with: -s +==26796== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..4ad179cf3 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26606== Memcheck, a memory error detector +==26606== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26606== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26606== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26606== Parent PID: 23966 +==26606== +==26606== +==26606== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26606== Open file descriptor 12: +==26606== at 0xF92C07D: pipe (pipe.c:29) +==26606== by 0x196BC07D: ??? +==26606== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26606== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26606== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26606== by 0x10218D38: PetscInitialize (pinit.c:924) +==26606== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26606== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26606== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26606== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26606== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26606== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26606== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26606== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) +==26606== +==26606== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26606== at 0xF930A1C: __open_nocancel (open64_nocancel.c:39) +==26606== by 0xF8B4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26606== by 0xF13E822: ??? +==26606== by 0xF13E96F: ??? +==26606== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26606== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26606== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26606== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26606== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26606== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26606== by 0x10218D38: PetscInitialize (pinit.c:924) +==26606== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26606== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26606== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26606== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26606== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26606== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26606== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26606== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) +==26606== +==26606== Open file descriptor 116: +==26606== +==26606== +==26606== Open file descriptor 113: +==26606== +==26606== +==26606== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt +==26606== +==26606== +==26606== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26606== +==26606== +==26606== +==26606== HEAP SUMMARY: +==26606== in use at exit: 618,327 bytes in 8,236 blocks +==26606== total heap usage: 18,258,676 allocs, 18,250,440 frees, 30,027,857,751 bytes allocated +==26606== +==26606== LEAK SUMMARY: +==26606== definitely lost: 0 bytes in 0 blocks +==26606== indirectly lost: 0 bytes in 0 blocks +==26606== possibly lost: 0 bytes in 0 blocks +==26606== still reachable: 88 bytes in 4 blocks +==26606== suppressed: 618,239 bytes in 8,232 blocks +==26606== Reachable blocks (those to which a pointer was found) are not shown. +==26606== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26606== +==26606== For lists of detected and suppressed errors, rerun with: -s +==26606== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestOffLatticeSimulationWithPdes_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOffLatticeSimulationWithPdes_valgrind.txt new file mode 100644 index 000000000..6b7d301d5 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOffLatticeSimulationWithPdes_valgrind.txt @@ -0,0 +1,73 @@ +==26938== Memcheck, a memory error detector +==26938== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26938== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26938== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info +==26938== Parent PID: 23966 +==26938== +==26938== +==26938== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26938== Open file descriptor 12: +==26938== at 0xFCC907D: pipe (pipe.c:29) +==26938== by 0x196BC07D: ??? +==26938== by 0x14CBA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26938== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26938== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26938== by 0x10218D38: PetscInitialize (pinit.c:924) +==26938== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26938== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26938== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26938== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26938== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26938== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26938== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26938== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) +==26938== +==26938== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26938== at 0xFCCDA1C: __open_nocancel (open64_nocancel.c:39) +==26938== by 0xFC51BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26938== by 0xF4DB822: ??? +==26938== by 0xF4DB96F: ??? +==26938== by 0x14D5F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26938== by 0x14D5F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26938== by 0x14D15922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26938== by 0x14CBA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26938== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26938== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26938== by 0x10218D38: PetscInitialize (pinit.c:924) +==26938== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26938== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26938== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26938== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26938== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26938== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26938== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26938== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) +==26938== +==26938== Open file descriptor 116: +==26938== +==26938== +==26938== Open file descriptor 113: +==26938== +==26938== +==26938== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt +==26938== +==26938== +==26938== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26938== +==26938== +==26938== +==26938== HEAP SUMMARY: +==26938== in use at exit: 618,295 bytes in 8,235 blocks +==26938== total heap usage: 8,504,751 allocs, 8,496,516 frees, 2,658,896,595 bytes allocated +==26938== +==26938== LEAK SUMMARY: +==26938== definitely lost: 0 bytes in 0 blocks +==26938== indirectly lost: 0 bytes in 0 blocks +==26938== possibly lost: 0 bytes in 0 blocks +==26938== still reachable: 56 bytes in 3 blocks +==26938== suppressed: 618,239 bytes in 8,232 blocks +==26938== Reachable blocks (those to which a pointer was found) are not shown. +==26938== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26938== +==26938== For lists of detected and suppressed errors, rerun with: -s +==26938== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..fbd1ed69e --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==27171== Memcheck, a memory error detector +==27171== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==27171== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==27171== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==27171== Parent PID: 23966 +==27171== +==27171== +==27171== FILE DESCRIPTORS: 9 open (3 std) at exit. +==27171== Open file descriptor 12: +==27171== at 0x10DE107D: pipe (pipe.c:29) +==27171== by 0x196BC07D: ??? +==27171== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27171== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27171== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27171== by 0xF292D38: PetscInitialize (pinit.c:924) +==27171== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27171== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27171== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==27171== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27171== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27171== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27171== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27171== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) +==27171== +==27171== Open file descriptor 8: /dev/shm/open_mpi.0000 +==27171== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==27171== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==27171== by 0xF13E822: ??? +==27171== by 0xF13E96F: ??? +==27171== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27171== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27171== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27171== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27171== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27171== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27171== by 0xF292D38: PetscInitialize (pinit.c:924) +==27171== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27171== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27171== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==27171== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27171== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27171== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27171== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27171== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) +==27171== +==27171== Open file descriptor 116: +==27171== +==27171== +==27171== Open file descriptor 113: +==27171== +==27171== +==27171== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt +==27171== +==27171== +==27171== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==27171== +==27171== +==27171== +==27171== HEAP SUMMARY: +==27171== in use at exit: 618,295 bytes in 8,235 blocks +==27171== total heap usage: 9,703,046 allocs, 9,694,811 frees, 2,583,525,909 bytes allocated +==27171== +==27171== LEAK SUMMARY: +==27171== definitely lost: 0 bytes in 0 blocks +==27171== indirectly lost: 0 bytes in 0 blocks +==27171== possibly lost: 0 bytes in 0 blocks +==27171== still reachable: 56 bytes in 3 blocks +==27171== suppressed: 618,239 bytes in 8,232 blocks +==27171== Reachable blocks (those to which a pointer was found) are not shown. +==27171== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==27171== +==27171== For lists of detected and suppressed errors, rerun with: -s +==27171== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestOffLatticeSimulation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOffLatticeSimulation_valgrind.txt new file mode 100644 index 000000000..d9ad1886d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOffLatticeSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==26447== Memcheck, a memory error detector +==26447== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26447== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26447== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation -malloc_debug -malloc_dump -memory_info +==26447== Parent PID: 23966 +==26447== +==26447== +==26447== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26447== Open file descriptor 12: +==26447== at 0xF92C07D: pipe (pipe.c:29) +==26447== by 0x196BC07D: ??? +==26447== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26447== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26447== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26447== by 0x10218D38: PetscInitialize (pinit.c:924) +==26447== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26447== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26447== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26447== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26447== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26447== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26447== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26447== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) +==26447== +==26447== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26447== at 0xF930A1C: __open_nocancel (open64_nocancel.c:39) +==26447== by 0xF8B4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26447== by 0xF13E822: ??? +==26447== by 0xF13E96F: ??? +==26447== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26447== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26447== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26447== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26447== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26447== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26447== by 0x10218D38: PetscInitialize (pinit.c:924) +==26447== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26447== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26447== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26447== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26447== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26447== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26447== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26447== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) +==26447== +==26447== Open file descriptor 116: +==26447== +==26447== +==26447== Open file descriptor 113: +==26447== +==26447== +==26447== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation_valgrind.txt +==26447== +==26447== +==26447== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26447== +==26447== +==26447== +==26447== HEAP SUMMARY: +==26447== in use at exit: 618,295 bytes in 8,235 blocks +==26447== total heap usage: 12,337,487 allocs, 12,329,252 frees, 3,798,821,312 bytes allocated +==26447== +==26447== LEAK SUMMARY: +==26447== definitely lost: 0 bytes in 0 blocks +==26447== indirectly lost: 0 bytes in 0 blocks +==26447== possibly lost: 0 bytes in 0 blocks +==26447== still reachable: 56 bytes in 3 blocks +==26447== suppressed: 618,239 bytes in 8,232 blocks +==26447== Reachable blocks (those to which a pointer was found) are not shown. +==26447== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26447== +==26447== For lists of detected and suppressed errors, rerun with: -s +==26447== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..09fbd2e54 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==27294== Memcheck, a memory error detector +==27294== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==27294== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==27294== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==27294== Parent PID: 23966 +==27294== +==27294== +==27294== FILE DESCRIPTORS: 9 open (3 std) at exit. +==27294== Open file descriptor 12: +==27294== at 0xFDA807D: pipe (pipe.c:29) +==27294== by 0x196BC07D: ??? +==27294== by 0x14DDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27294== by 0x11A04418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27294== by 0x1199DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27294== by 0x10694D38: PetscInitialize (pinit.c:924) +==27294== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27294== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27294== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27294== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27294== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27294== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27294== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27294== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) +==27294== +==27294== Open file descriptor 8: /dev/shm/open_mpi.0000 +==27294== at 0xFDACA1C: __open_nocancel (open64_nocancel.c:39) +==27294== by 0xFD30BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==27294== by 0xF13E822: ??? +==27294== by 0xF13E96F: ??? +==27294== by 0x14E836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27294== by 0x14E83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27294== by 0x14E39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27294== by 0x14DDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27294== by 0x11A04418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27294== by 0x1199DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27294== by 0x10694D38: PetscInitialize (pinit.c:924) +==27294== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27294== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27294== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27294== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27294== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27294== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27294== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27294== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) +==27294== +==27294== Open file descriptor 116: +==27294== +==27294== +==27294== Open file descriptor 113: +==27294== +==27294== +==27294== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt +==27294== +==27294== +==27294== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==27294== +==27294== +==27294== +==27294== HEAP SUMMARY: +==27294== in use at exit: 618,295 bytes in 8,235 blocks +==27294== total heap usage: 7,141,345 allocs, 7,133,110 frees, 8,072,505,752 bytes allocated +==27294== +==27294== LEAK SUMMARY: +==27294== definitely lost: 0 bytes in 0 blocks +==27294== indirectly lost: 0 bytes in 0 blocks +==27294== possibly lost: 0 bytes in 0 blocks +==27294== still reachable: 56 bytes in 3 blocks +==27294== suppressed: 618,239 bytes in 8,232 blocks +==27294== Reachable blocks (those to which a pointer was found) are not shown. +==27294== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==27294== +==27294== For lists of detected and suppressed errors, rerun with: -s +==27294== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestOnLatticeSimulationWithPdes_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOnLatticeSimulationWithPdes_valgrind.txt new file mode 100644 index 000000000..6e57bd391 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOnLatticeSimulationWithPdes_valgrind.txt @@ -0,0 +1,73 @@ +==27302== Memcheck, a memory error detector +==27302== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==27302== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==27302== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info +==27302== Parent PID: 23966 +==27302== +==27302== +==27302== FILE DESCRIPTORS: 9 open (3 std) at exit. +==27302== Open file descriptor 12: +==27302== at 0xFC8707D: pipe (pipe.c:29) +==27302== by 0x196BC07D: ??? +==27302== by 0x14CBA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27302== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27302== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27302== by 0x10218D38: PetscInitialize (pinit.c:924) +==27302== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27302== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27302== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27302== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27302== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27302== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27302== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27302== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) +==27302== +==27302== Open file descriptor 8: /dev/shm/open_mpi.0000 +==27302== at 0xFC8BA1C: __open_nocancel (open64_nocancel.c:39) +==27302== by 0xFC0FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==27302== by 0xF4DB822: ??? +==27302== by 0xF4DB96F: ??? +==27302== by 0x14D5F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27302== by 0x14D5F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27302== by 0x14D15922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27302== by 0x14CBA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27302== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27302== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27302== by 0x10218D38: PetscInitialize (pinit.c:924) +==27302== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27302== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27302== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27302== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27302== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27302== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27302== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27302== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) +==27302== +==27302== Open file descriptor 116: +==27302== +==27302== +==27302== Open file descriptor 113: +==27302== +==27302== +==27302== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt +==27302== +==27302== +==27302== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==27302== +==27302== +==27302== +==27302== HEAP SUMMARY: +==27302== in use at exit: 618,295 bytes in 8,235 blocks +==27302== total heap usage: 2,400,124 allocs, 2,391,889 frees, 1,776,528,087 bytes allocated +==27302== +==27302== LEAK SUMMARY: +==27302== definitely lost: 0 bytes in 0 blocks +==27302== indirectly lost: 0 bytes in 0 blocks +==27302== possibly lost: 0 bytes in 0 blocks +==27302== still reachable: 56 bytes in 3 blocks +==27302== suppressed: 618,239 bytes in 8,232 blocks +==27302== Reachable blocks (those to which a pointer was found) are not shown. +==27302== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==27302== +==27302== For lists of detected and suppressed errors, rerun with: -s +==27302== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..623efe3a9 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==33689== Memcheck, a memory error detector +==33689== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==33689== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==33689== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==33689== Parent PID: 23966 +==33689== +==33689== +==33689== FILE DESCRIPTORS: 9 open (3 std) at exit. +==33689== Open file descriptor 12: +==33689== at 0xF92C07D: pipe (pipe.c:29) +==33689== by 0x196BC07D: ??? +==33689== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==33689== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==33689== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==33689== by 0x10218D38: PetscInitialize (pinit.c:924) +==33689== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==33689== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==33689== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==33689== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==33689== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==33689== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==33689== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==33689== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) +==33689== +==33689== Open file descriptor 8: /dev/shm/open_mpi.0000 +==33689== at 0xF930A1C: __open_nocancel (open64_nocancel.c:39) +==33689== by 0xF8B4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==33689== by 0xF13E822: ??? +==33689== by 0xF13E96F: ??? +==33689== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==33689== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==33689== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==33689== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==33689== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==33689== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==33689== by 0x10218D38: PetscInitialize (pinit.c:924) +==33689== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==33689== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==33689== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==33689== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==33689== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==33689== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==33689== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==33689== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) +==33689== +==33689== Open file descriptor 116: +==33689== +==33689== +==33689== Open file descriptor 113: +==33689== +==33689== +==33689== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt +==33689== +==33689== +==33689== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==33689== +==33689== +==33689== +==33689== HEAP SUMMARY: +==33689== in use at exit: 618,311 bytes in 8,236 blocks +==33689== total heap usage: 11,682,556 allocs, 11,674,320 frees, 2,208,188,437 bytes allocated +==33689== +==33689== LEAK SUMMARY: +==33689== definitely lost: 0 bytes in 0 blocks +==33689== indirectly lost: 0 bytes in 0 blocks +==33689== possibly lost: 0 bytes in 0 blocks +==33689== still reachable: 72 bytes in 4 blocks +==33689== suppressed: 618,239 bytes in 8,232 blocks +==33689== Reachable blocks (those to which a pointer was found) are not shown. +==33689== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==33689== +==33689== For lists of detected and suppressed errors, rerun with: -s +==33689== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestOperatorSplittingMonodomainSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOperatorSplittingMonodomainSolver_valgrind.txt new file mode 100644 index 000000000..20eb52459 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOperatorSplittingMonodomainSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43380== Memcheck, a memory error detector +==43380== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43380== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43380== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestOperatorSplittingMonodomainSolver -malloc_debug -malloc_dump -memory_info +==43380== Parent PID: 23966 +==43380== +==43380== +==43380== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43380== Open file descriptor 12: +==43380== at 0xA75B07D: pipe (pipe.c:29) +==43380== by 0x1433707D: ??? +==43380== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43380== by 0xBE54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43380== by 0xBDEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43380== by 0xAAE4D38: PetscInitialize (pinit.c:924) +==43380== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43380== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43380== by 0x1199B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43380== by 0x115213: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43380== by 0x1175A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43380== by 0x11749F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43380== by 0x117AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43380== by 0x113A15: main (TestOperatorSplittingMonodomainSolver.cpp:18) +==43380== +==43380== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43380== at 0xA75FA1C: __open_nocancel (open64_nocancel.c:39) +==43380== by 0xA6E3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43380== by 0xA07C822: ??? +==43380== by 0xA07C96F: ??? +==43380== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43380== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43380== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43380== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43380== by 0xBE54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43380== by 0xBDEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43380== by 0xAAE4D38: PetscInitialize (pinit.c:924) +==43380== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43380== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43380== by 0x1199B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43380== by 0x115213: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43380== by 0x1175A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43380== by 0x11749F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43380== by 0x117AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43380== by 0x113A15: main (TestOperatorSplittingMonodomainSolver.cpp:18) +==43380== +==43380== Open file descriptor 116: +==43380== +==43380== +==43380== Open file descriptor 113: +==43380== +==43380== +==43380== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOperatorSplittingMonodomainSolver_valgrind.txt +==43380== +==43380== +==43380== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43380== +==43380== +==43380== +==43380== HEAP SUMMARY: +==43380== in use at exit: 618,830 bytes in 8,248 blocks +==43380== total heap usage: 81,699 allocs, 73,451 frees, 1,494,728,852 bytes allocated +==43380== +==43380== LEAK SUMMARY: +==43380== definitely lost: 0 bytes in 0 blocks +==43380== indirectly lost: 0 bytes in 0 blocks +==43380== possibly lost: 0 bytes in 0 blocks +==43380== still reachable: 24 bytes in 2 blocks +==43380== suppressed: 618,806 bytes in 8,246 blocks +==43380== Reachable blocks (those to which a pointer was found) are not shown. +==43380== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43380== +==43380== For lists of detected and suppressed errors, rerun with: -s +==43380== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2024-10-14_17-51-53/TestOutputDirectoryFifoQueue_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOutputDirectoryFifoQueue_valgrind.txt new file mode 100644 index 000000000..143f2d48a --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOutputDirectoryFifoQueue_valgrind.txt @@ -0,0 +1,73 @@ +==24137== Memcheck, a memory error detector +==24137== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24137== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24137== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestOutputDirectoryFifoQueue -malloc_debug -malloc_dump -memory_info +==24137== Parent PID: 23966 +==24137== +==24137== +==24137== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24137== Open file descriptor 12: +==24137== at 0x4CB207D: pipe (pipe.c:29) +==24137== by 0xAEAD07D: ??? +==24137== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24137== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24137== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24137== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24137== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24137== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24137== by 0x114118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24137== by 0x10FF93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24137== by 0x1121E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24137== by 0x1120DD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24137== by 0x1126F1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24137== by 0x10E795: main (TestOutputDirectoryFifoQueue.cpp:18) +==24137== +==24137== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24137== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24137== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24137== by 0x4934822: ??? +==24137== by 0x493496F: ??? +==24137== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24137== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24137== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24137== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24137== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24137== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24137== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24137== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24137== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24137== by 0x114118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24137== by 0x10FF93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24137== by 0x1121E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24137== by 0x1120DD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24137== by 0x1126F1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24137== by 0x10E795: main (TestOutputDirectoryFifoQueue.cpp:18) +==24137== +==24137== Open file descriptor 116: +==24137== +==24137== +==24137== Open file descriptor 113: +==24137== +==24137== +==24137== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOutputDirectoryFifoQueue_valgrind.txt +==24137== +==24137== +==24137== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24137== +==24137== +==24137== +==24137== HEAP SUMMARY: +==24137== in use at exit: 617,870 bytes in 8,238 blocks +==24137== total heap usage: 45,612 allocs, 37,374 frees, 1,338,679,079 bytes allocated +==24137== +==24137== LEAK SUMMARY: +==24137== definitely lost: 0 bytes in 0 blocks +==24137== indirectly lost: 0 bytes in 0 blocks +==24137== possibly lost: 0 bytes in 0 blocks +==24137== still reachable: 24 bytes in 2 blocks +==24137== suppressed: 617,846 bytes in 8,236 blocks +==24137== Reachable blocks (those to which a pointer was found) are not shown. +==24137== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24137== +==24137== For lists of detected and suppressed errors, rerun with: -s +==24137== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestOutputFileHandler_valgrind.txt b/log-files/2024-10-14_17-51-53/TestOutputFileHandler_valgrind.txt new file mode 100644 index 000000000..b14db906c --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestOutputFileHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24138== Memcheck, a memory error detector +==24138== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24138== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24138== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestOutputFileHandler -malloc_debug -malloc_dump -memory_info +==24138== Parent PID: 23966 +==24138== +==24138== +==24138== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24138== Open file descriptor 12: +==24138== at 0x4CB207D: pipe (pipe.c:29) +==24138== by 0xAEAD07D: ??? +==24138== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24138== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24138== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24138== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24138== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24138== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24138== by 0x11718A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24138== by 0x1128AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24138== by 0x11514C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24138== by 0x114FEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24138== by 0x115683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24138== by 0x110CD5: main (TestOutputFileHandler.cpp:19) +==24138== +==24138== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24138== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24138== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24138== by 0x4934822: ??? +==24138== by 0x493496F: ??? +==24138== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24138== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24138== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24138== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24138== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24138== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24138== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24138== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24138== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24138== by 0x11718A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24138== by 0x1128AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24138== by 0x11514C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24138== by 0x114FEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24138== by 0x115683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24138== by 0x110CD5: main (TestOutputFileHandler.cpp:19) +==24138== +==24138== Open file descriptor 116: +==24138== +==24138== +==24138== Open file descriptor 113: +==24138== +==24138== +==24138== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOutputFileHandler_valgrind.txt +==24138== +==24138== +==24138== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24138== +==24138== +==24138== +==24138== HEAP SUMMARY: +==24138== in use at exit: 617,870 bytes in 8,238 blocks +==24138== total heap usage: 46,514 allocs, 38,276 frees, 1,339,257,265 bytes allocated +==24138== +==24138== LEAK SUMMARY: +==24138== definitely lost: 0 bytes in 0 blocks +==24138== indirectly lost: 0 bytes in 0 blocks +==24138== possibly lost: 0 bytes in 0 blocks +==24138== still reachable: 24 bytes in 2 blocks +==24138== suppressed: 617,846 bytes in 8,236 blocks +==24138== Reachable blocks (those to which a pointer was found) are not shown. +==24138== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24138== +==24138== For lists of detected and suppressed errors, rerun with: -s +==24138== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestPCBlockDiagonal_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPCBlockDiagonal_valgrind.txt new file mode 100644 index 000000000..640ae7d9d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPCBlockDiagonal_valgrind.txt @@ -0,0 +1,73 @@ +==24317== Memcheck, a memory error detector +==24317== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24317== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24317== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCBlockDiagonal -malloc_debug -malloc_dump -memory_info +==24317== Parent PID: 23966 +==24317== +==24317== +==24317== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24317== Open file descriptor 12: +==24317== at 0x60C107D: pipe (pipe.c:29) +==24317== by 0xAF4107D: ??? +==24317== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24317== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24317== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24317== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24317== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24317== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24317== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24317== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24317== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24317== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24317== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24317== by 0x10D995: main (TestPCBlockDiagonal.cpp:18) +==24317== +==24317== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24317== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24317== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24317== by 0x5D41822: ??? +==24317== by 0x5D4196F: ??? +==24317== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24317== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24317== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24317== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24317== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24317== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24317== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24317== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24317== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24317== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24317== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24317== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24317== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24317== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24317== by 0x10D995: main (TestPCBlockDiagonal.cpp:18) +==24317== +==24317== Open file descriptor 116: +==24317== +==24317== +==24317== Open file descriptor 113: +==24317== +==24317== +==24317== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCBlockDiagonal_valgrind.txt +==24317== +==24317== +==24317== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24317== +==24317== +==24317== +==24317== HEAP SUMMARY: +==24317== in use at exit: 617,902 bytes in 8,239 blocks +==24317== total heap usage: 56,334 allocs, 48,095 frees, 1,364,707,328 bytes allocated +==24317== +==24317== LEAK SUMMARY: +==24317== definitely lost: 0 bytes in 0 blocks +==24317== indirectly lost: 0 bytes in 0 blocks +==24317== possibly lost: 0 bytes in 0 blocks +==24317== still reachable: 40 bytes in 3 blocks +==24317== suppressed: 617,862 bytes in 8,236 blocks +==24317== Reachable blocks (those to which a pointer was found) are not shown. +==24317== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24317== +==24317== For lists of detected and suppressed errors, rerun with: -s +==24317== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestPCLDUFactorisation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPCLDUFactorisation_valgrind.txt new file mode 100644 index 000000000..2b9ee6b06 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPCLDUFactorisation_valgrind.txt @@ -0,0 +1,73 @@ +==24319== Memcheck, a memory error detector +==24319== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24319== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24319== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCLDUFactorisation -malloc_debug -malloc_dump -memory_info +==24319== Parent PID: 23966 +==24319== +==24319== +==24319== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24319== Open file descriptor 12: +==24319== at 0x60C107D: pipe (pipe.c:29) +==24319== by 0xAF4107D: ??? +==24319== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24319== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24319== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24319== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24319== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24319== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24319== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24319== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24319== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24319== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24319== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24319== by 0x10D995: main (TestPCLDUFactorisation.cpp:18) +==24319== +==24319== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24319== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24319== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24319== by 0x5D41822: ??? +==24319== by 0x5D4196F: ??? +==24319== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24319== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24319== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24319== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24319== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24319== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24319== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24319== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24319== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24319== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24319== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24319== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24319== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24319== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24319== by 0x10D995: main (TestPCLDUFactorisation.cpp:18) +==24319== +==24319== Open file descriptor 116: +==24319== +==24319== +==24319== Open file descriptor 113: +==24319== +==24319== +==24319== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCLDUFactorisation_valgrind.txt +==24319== +==24319== +==24319== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24319== +==24319== +==24319== +==24319== HEAP SUMMARY: +==24319== in use at exit: 617,902 bytes in 8,239 blocks +==24319== total heap usage: 57,131 allocs, 48,892 frees, 1,365,677,831 bytes allocated +==24319== +==24319== LEAK SUMMARY: +==24319== definitely lost: 0 bytes in 0 blocks +==24319== indirectly lost: 0 bytes in 0 blocks +==24319== possibly lost: 0 bytes in 0 blocks +==24319== still reachable: 40 bytes in 3 blocks +==24319== suppressed: 617,862 bytes in 8,236 blocks +==24319== Reachable blocks (those to which a pointer was found) are not shown. +==24319== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24319== +==24319== For lists of detected and suppressed errors, rerun with: -s +==24319== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestPCTwoLevelsBlockDiagonal_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPCTwoLevelsBlockDiagonal_valgrind.txt new file mode 100644 index 000000000..08b7acbe2 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPCTwoLevelsBlockDiagonal_valgrind.txt @@ -0,0 +1,73 @@ +==24326== Memcheck, a memory error detector +==24326== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24326== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24326== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCTwoLevelsBlockDiagonal -malloc_debug -malloc_dump -memory_info +==24326== Parent PID: 23966 +==24326== +==24326== +==24326== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24326== Open file descriptor 12: +==24326== at 0x60C107D: pipe (pipe.c:29) +==24326== by 0xAF4107D: ??? +==24326== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24326== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24326== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24326== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24326== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24326== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24326== by 0x114A0E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24326== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24326== by 0x1127C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24326== by 0x1126C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24326== by 0x112CD5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24326== by 0x10EA95: main (TestPCTwoLevelsBlockDiagonal.cpp:18) +==24326== +==24326== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24326== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24326== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24326== by 0x5D41822: ??? +==24326== by 0x5D4196F: ??? +==24326== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24326== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24326== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24326== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24326== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24326== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24326== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24326== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24326== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24326== by 0x114A0E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24326== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24326== by 0x1127C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24326== by 0x1126C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24326== by 0x112CD5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24326== by 0x10EA95: main (TestPCTwoLevelsBlockDiagonal.cpp:18) +==24326== +==24326== Open file descriptor 116: +==24326== +==24326== +==24326== Open file descriptor 113: +==24326== +==24326== +==24326== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCTwoLevelsBlockDiagonal_valgrind.txt +==24326== +==24326== +==24326== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24326== +==24326== +==24326== +==24326== HEAP SUMMARY: +==24326== in use at exit: 617,902 bytes in 8,239 blocks +==24326== total heap usage: 76,513 allocs, 68,274 frees, 1,345,541,157 bytes allocated +==24326== +==24326== LEAK SUMMARY: +==24326== definitely lost: 0 bytes in 0 blocks +==24326== indirectly lost: 0 bytes in 0 blocks +==24326== possibly lost: 0 bytes in 0 blocks +==24326== still reachable: 40 bytes in 3 blocks +==24326== suppressed: 617,862 bytes in 8,236 blocks +==24326== Reachable blocks (those to which a pointer was found) are not shown. +==24326== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24326== +==24326== For lists of detected and suppressed errors, rerun with: -s +==24326== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestPapillaryFibreCalculator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPapillaryFibreCalculator_valgrind.txt new file mode 100644 index 000000000..cbc52dc01 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPapillaryFibreCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==41298== Memcheck, a memory error detector +==41298== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41298== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41298== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPapillaryFibreCalculator -malloc_debug -malloc_dump -memory_info +==41298== Parent PID: 23966 +==41298== +==41298== +==41298== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41298== Open file descriptor 116: +==41298== +==41298== +==41298== Open file descriptor 113: +==41298== +==41298== +==41298== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPapillaryFibreCalculator_valgrind.txt +==41298== +==41298== +==41298== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41298== +==41298== +==41298== +==41298== HEAP SUMMARY: +==41298== in use at exit: 24 bytes in 2 blocks +==41298== total heap usage: 7,291 allocs, 7,289 frees, 1,074,336 bytes allocated +==41298== +==41298== LEAK SUMMARY: +==41298== definitely lost: 0 bytes in 0 blocks +==41298== indirectly lost: 0 bytes in 0 blocks +==41298== possibly lost: 0 bytes in 0 blocks +==41298== still reachable: 24 bytes in 2 blocks +==41298== suppressed: 0 bytes in 0 blocks +==41298== Reachable blocks (those to which a pointer was found) are not shown. +==41298== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41298== +==41298== For lists of detected and suppressed errors, rerun with: -s +==41298== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-10-14_17-51-53/TestParabolicBoxDomainPdeModifier_valgrind.txt b/log-files/2024-10-14_17-51-53/TestParabolicBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..4a61b3bc7 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestParabolicBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25482== Memcheck, a memory error detector +==25482== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25482== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25482== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParabolicBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25482== Parent PID: 23966 +==25482== +==25482== +==25482== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25482== Open file descriptor 12: +==25482== at 0x1109707D: pipe (pipe.c:29) +==25482== by 0x196BC07D: ??? +==25482== by 0x14C1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25482== by 0x1099F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25482== by 0x10938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25482== by 0xF62FD38: PetscInitialize (pinit.c:924) +==25482== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25482== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25482== by 0x133C67: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25482== by 0x12E57D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25482== by 0x13121C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25482== by 0x1310BC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25482== by 0x131753: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25482== by 0x12C9A5: main (TestParabolicBoxDomainPdeModifier.cpp:19) +==25482== +==25482== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25482== at 0x1109BA1C: __open_nocancel (open64_nocancel.c:39) +==25482== by 0x1101FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25482== by 0xF4DB822: ??? +==25482== by 0xF4DB96F: ??? +==25482== by 0x14CBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25482== by 0x14CBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25482== by 0x14C75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25482== by 0x14C1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25482== by 0x1099F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25482== by 0x10938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25482== by 0xF62FD38: PetscInitialize (pinit.c:924) +==25482== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25482== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25482== by 0x133C67: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25482== by 0x12E57D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25482== by 0x13121C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25482== by 0x1310BC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25482== by 0x131753: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25482== by 0x12C9A5: main (TestParabolicBoxDomainPdeModifier.cpp:19) +==25482== +==25482== Open file descriptor 116: +==25482== +==25482== +==25482== Open file descriptor 113: +==25482== +==25482== +==25482== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParabolicBoxDomainPdeModifier_valgrind.txt +==25482== +==25482== +==25482== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25482== +==25482== +==25482== +==25482== HEAP SUMMARY: +==25482== in use at exit: 618,295 bytes in 8,235 blocks +==25482== total heap usage: 2,829,799 allocs, 2,821,564 frees, 1,621,917,126 bytes allocated +==25482== +==25482== LEAK SUMMARY: +==25482== definitely lost: 0 bytes in 0 blocks +==25482== indirectly lost: 0 bytes in 0 blocks +==25482== possibly lost: 0 bytes in 0 blocks +==25482== still reachable: 56 bytes in 3 blocks +==25482== suppressed: 618,239 bytes in 8,232 blocks +==25482== Reachable blocks (those to which a pointer was found) are not shown. +==25482== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25482== +==25482== For lists of detected and suppressed errors, rerun with: -s +==25482== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestParabolicGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-10-14_17-51-53/TestParabolicGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..c4d0fb0f9 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestParabolicGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25490== Memcheck, a memory error detector +==25490== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25490== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25490== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParabolicGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25490== Parent PID: 23966 +==25490== +==25490== +==25490== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25490== Open file descriptor 12: +==25490== at 0x1117E07D: pipe (pipe.c:29) +==25490== by 0x196BC07D: ??? +==25490== by 0x14C1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25490== by 0x1099F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25490== by 0x10938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25490== by 0xF62FD38: PetscInitialize (pinit.c:924) +==25490== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25490== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25490== by 0x1396A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25490== by 0x13395D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25490== by 0x136826: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25490== by 0x1366C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25490== by 0x136D5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25490== by 0x131D85: main (TestParabolicGrowingDomainPdeModifier.cpp:19) +==25490== +==25490== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25490== at 0x11182A1C: __open_nocancel (open64_nocancel.c:39) +==25490== by 0x11106BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25490== by 0xF4DB822: ??? +==25490== by 0xF4DB96F: ??? +==25490== by 0x14CBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25490== by 0x14CBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25490== by 0x14C75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25490== by 0x14C1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25490== by 0x1099F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25490== by 0x10938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25490== by 0xF62FD38: PetscInitialize (pinit.c:924) +==25490== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25490== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25490== by 0x1396A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25490== by 0x13395D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25490== by 0x136826: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25490== by 0x1366C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25490== by 0x136D5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25490== by 0x131D85: main (TestParabolicGrowingDomainPdeModifier.cpp:19) +==25490== +==25490== Open file descriptor 116: +==25490== +==25490== +==25490== Open file descriptor 113: +==25490== +==25490== +==25490== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParabolicGrowingDomainPdeModifier_valgrind.txt +==25490== +==25490== +==25490== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25490== +==25490== +==25490== +==25490== HEAP SUMMARY: +==25490== in use at exit: 618,295 bytes in 8,235 blocks +==25490== total heap usage: 7,057,268 allocs, 7,049,033 frees, 1,809,463,588 bytes allocated +==25490== +==25490== LEAK SUMMARY: +==25490== definitely lost: 0 bytes in 0 blocks +==25490== indirectly lost: 0 bytes in 0 blocks +==25490== possibly lost: 0 bytes in 0 blocks +==25490== still reachable: 56 bytes in 3 blocks +==25490== suppressed: 618,239 bytes in 8,232 blocks +==25490== Reachable blocks (those to which a pointer was found) are not shown. +==25490== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25490== +==25490== For lists of detected and suppressed errors, rerun with: -s +==25490== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestParallelCellsGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestParallelCellsGenerator_valgrind.txt new file mode 100644 index 000000000..7dedf1f0c --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestParallelCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==25415== Memcheck, a memory error detector +==25415== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25415== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25415== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParallelCellsGenerator -malloc_debug -malloc_dump -memory_info +==25415== Parent PID: 23966 +==25415== +==25415== +==25415== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25415== Open file descriptor 12: +==25415== at 0x10CB807D: pipe (pipe.c:29) +==25415== by 0x196BC07D: ??? +==25415== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25415== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25415== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25415== by 0xF22DD38: PetscInitialize (pinit.c:924) +==25415== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25415== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25415== by 0x123D94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25415== by 0x11ED1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25415== by 0x1216E0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25415== by 0x121580: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25415== by 0x121C17: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25415== by 0x11D0F5: main (TestParallelCellsGenerator.cpp:19) +==25415== +==25415== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25415== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==25415== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25415== by 0x104BC822: ??? +==25415== by 0x104BC96F: ??? +==25415== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25415== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25415== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25415== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25415== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25415== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25415== by 0xF22DD38: PetscInitialize (pinit.c:924) +==25415== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25415== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25415== by 0x123D94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25415== by 0x11ED1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25415== by 0x1216E0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25415== by 0x121580: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25415== by 0x121C17: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25415== by 0x11D0F5: main (TestParallelCellsGenerator.cpp:19) +==25415== +==25415== Open file descriptor 116: +==25415== +==25415== +==25415== Open file descriptor 113: +==25415== +==25415== +==25415== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelCellsGenerator_valgrind.txt +==25415== +==25415== +==25415== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25415== +==25415== +==25415== +==25415== HEAP SUMMARY: +==25415== in use at exit: 618,430 bytes in 8,240 blocks +==25415== total heap usage: 54,341 allocs, 46,101 frees, 1,339,091,320 bytes allocated +==25415== +==25415== LEAK SUMMARY: +==25415== definitely lost: 0 bytes in 0 blocks +==25415== indirectly lost: 0 bytes in 0 blocks +==25415== possibly lost: 0 bytes in 0 blocks +==25415== still reachable: 120 bytes in 4 blocks +==25415== suppressed: 618,310 bytes in 8,236 blocks +==25415== Reachable blocks (those to which a pointer was found) are not shown. +==25415== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25415== +==25415== For lists of detected and suppressed errors, rerun with: -s +==25415== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestParallelColumnDataReaderWriter_valgrind.txt b/log-files/2024-10-14_17-51-53/TestParallelColumnDataReaderWriter_valgrind.txt new file mode 100644 index 000000000..a585816a7 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestParallelColumnDataReaderWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24245== Memcheck, a memory error detector +==24245== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24245== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24245== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestParallelColumnDataReaderWriter -malloc_debug -malloc_dump -memory_info +==24245== Parent PID: 23966 +==24245== +==24245== +==24245== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24245== Open file descriptor 12: +==24245== at 0x60A507D: pipe (pipe.c:29) +==24245== by 0xAF2007D: ??? +==24245== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24245== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24245== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24245== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24245== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24245== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24245== by 0x11B354: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24245== by 0x114A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24245== by 0x1174D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24245== by 0x117378: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24245== by 0x117A0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24245== by 0x112E75: main (TestParallelColumnDataReaderWriter.cpp:19) +==24245== +==24245== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24245== at 0x60A9A1C: __open_nocancel (open64_nocancel.c:39) +==24245== by 0x602DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24245== by 0x5D25822: ??? +==24245== by 0x5D2596F: ??? +==24245== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24245== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24245== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24245== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24245== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24245== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24245== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24245== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24245== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24245== by 0x11B354: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24245== by 0x114A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24245== by 0x1174D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24245== by 0x117378: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24245== by 0x117A0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24245== by 0x112E75: main (TestParallelColumnDataReaderWriter.cpp:19) +==24245== +==24245== Open file descriptor 116: +==24245== +==24245== +==24245== Open file descriptor 113: +==24245== +==24245== +==24245== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelColumnDataReaderWriter_valgrind.txt +==24245== +==24245== +==24245== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24245== +==24245== +==24245== +==24245== HEAP SUMMARY: +==24245== in use at exit: 617,886 bytes in 8,238 blocks +==24245== total heap usage: 46,058 allocs, 37,820 frees, 1,338,789,159 bytes allocated +==24245== +==24245== LEAK SUMMARY: +==24245== definitely lost: 0 bytes in 0 blocks +==24245== indirectly lost: 0 bytes in 0 blocks +==24245== possibly lost: 0 bytes in 0 blocks +==24245== still reachable: 24 bytes in 2 blocks +==24245== suppressed: 617,862 bytes in 8,236 blocks +==24245== Reachable blocks (those to which a pointer was found) are not shown. +==24245== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24245== +==24245== For lists of detected and suppressed errors, rerun with: -s +==24245== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestParallelWriterPerformance_valgrind.txt b/log-files/2024-10-14_17-51-53/TestParallelWriterPerformance_valgrind.txt new file mode 100644 index 000000000..4e239247f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestParallelWriterPerformance_valgrind.txt @@ -0,0 +1,73 @@ +==24252== Memcheck, a memory error detector +==24252== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24252== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24252== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestParallelWriterPerformance -malloc_debug -malloc_dump -memory_info +==24252== Parent PID: 23966 +==24252== +==24252== +==24252== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24252== Open file descriptor 12: +==24252== at 0x60A507D: pipe (pipe.c:29) +==24252== by 0xAF2007D: ??? +==24252== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24252== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24252== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24252== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24252== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24252== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24252== by 0x11316C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24252== by 0x10F013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24252== by 0x111202: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24252== by 0x1110FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24252== by 0x111711: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24252== by 0x10D815: main (TestParallelWriterPerformance.cpp:18) +==24252== +==24252== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24252== at 0x60A9A1C: __open_nocancel (open64_nocancel.c:39) +==24252== by 0x602DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24252== by 0x5D25822: ??? +==24252== by 0x5D2596F: ??? +==24252== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24252== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24252== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24252== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24252== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24252== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24252== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24252== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24252== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24252== by 0x11316C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24252== by 0x10F013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24252== by 0x111202: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24252== by 0x1110FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24252== by 0x111711: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24252== by 0x10D815: main (TestParallelWriterPerformance.cpp:18) +==24252== +==24252== Open file descriptor 116: +==24252== +==24252== +==24252== Open file descriptor 113: +==24252== +==24252== +==24252== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelWriterPerformance_valgrind.txt +==24252== +==24252== +==24252== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24252== +==24252== +==24252== +==24252== HEAP SUMMARY: +==24252== in use at exit: 617,886 bytes in 8,238 blocks +==24252== total heap usage: 45,428 allocs, 37,190 frees, 1,338,448,963 bytes allocated +==24252== +==24252== LEAK SUMMARY: +==24252== definitely lost: 0 bytes in 0 blocks +==24252== indirectly lost: 0 bytes in 0 blocks +==24252== possibly lost: 0 bytes in 0 blocks +==24252== still reachable: 24 bytes in 2 blocks +==24252== suppressed: 617,862 bytes in 8,236 blocks +==24252== Reachable blocks (those to which a pointer was found) are not shown. +==24252== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24252== +==24252== For lists of detected and suppressed errors, rerun with: -s +==24252== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestPdeSimulationTime_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPdeSimulationTime_valgrind.txt new file mode 100644 index 000000000..8b11af628 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPdeSimulationTime_valgrind.txt @@ -0,0 +1,73 @@ +==25179== Memcheck, a memory error detector +==25179== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25179== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25179== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestPdeSimulationTime -malloc_debug -malloc_dump -memory_info +==25179== Parent PID: 23966 +==25179== +==25179== +==25179== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25179== Open file descriptor 12: +==25179== at 0x505107D: pipe (pipe.c:29) +==25179== by 0x104E607D: ??? +==25179== by 0xC3264CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25179== by 0x8728418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25179== by 0x86C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25179== by 0x7003D38: PetscInitialize (pinit.c:924) +==25179== by 0x4C971D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25179== by 0x4C97227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25179== by 0x111E6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25179== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25179== by 0x10FF34: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25179== by 0x10FE2F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25179== by 0x110443: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25179== by 0x10C415: main (TestPdeSimulationTime.cpp:18) +==25179== +==25179== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25179== at 0x5055A1C: __open_nocancel (open64_nocancel.c:39) +==25179== by 0x4FD9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25179== by 0x4CD1822: ??? +==25179== by 0x4CD196F: ??? +==25179== by 0xC3CD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25179== by 0xC3CD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25179== by 0xC383922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25179== by 0xC3262DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25179== by 0x8728418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25179== by 0x86C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25179== by 0x7003D38: PetscInitialize (pinit.c:924) +==25179== by 0x4C971D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25179== by 0x4C97227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25179== by 0x111E6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25179== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25179== by 0x10FF34: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25179== by 0x10FE2F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25179== by 0x110443: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25179== by 0x10C415: main (TestPdeSimulationTime.cpp:18) +==25179== +==25179== Open file descriptor 116: +==25179== +==25179== +==25179== Open file descriptor 113: +==25179== +==25179== +==25179== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPdeSimulationTime_valgrind.txt +==25179== +==25179== +==25179== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25179== +==25179== +==25179== +==25179== HEAP SUMMARY: +==25179== in use at exit: 618,270 bytes in 8,238 blocks +==25179== total heap usage: 47,332 allocs, 39,094 frees, 1,338,384,654 bytes allocated +==25179== +==25179== LEAK SUMMARY: +==25179== definitely lost: 0 bytes in 0 blocks +==25179== indirectly lost: 0 bytes in 0 blocks +==25179== possibly lost: 0 bytes in 0 blocks +==25179== still reachable: 24 bytes in 2 blocks +==25179== suppressed: 618,246 bytes in 8,236 blocks +==25179== Reachable blocks (those to which a pointer was found) are not shown. +==25179== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25179== +==25179== For lists of detected and suppressed errors, rerun with: -s +==25179== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestPdeTestClasses_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPdeTestClasses_valgrind.txt new file mode 100644 index 000000000..29d7c5162 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPdeTestClasses_valgrind.txt @@ -0,0 +1,73 @@ +==25032== Memcheck, a memory error detector +==25032== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25032== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25032== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestPdeTestClasses -malloc_debug -malloc_dump -memory_info +==25032== Parent PID: 23966 +==25032== +==25032== +==25032== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25032== Open file descriptor 12: +==25032== at 0x6A4007D: pipe (pipe.c:29) +==25032== by 0x100D407D: ??? +==25032== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25032== by 0x804A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25032== by 0x7FE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25032== by 0x6CDAD38: PetscInitialize (pinit.c:924) +==25032== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25032== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25032== by 0x13051E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25032== by 0x12BAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25032== by 0x12E0E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25032== by 0x12DFE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25032== by 0x12E5F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25032== by 0x12A2F5: main (TestPdeTestClasses.cpp:18) +==25032== +==25032== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25032== at 0x6A44A1C: __open_nocancel (open64_nocancel.c:39) +==25032== by 0x69C8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25032== by 0x6597822: ??? +==25032== by 0x659796F: ??? +==25032== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25032== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25032== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25032== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25032== by 0x804A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25032== by 0x7FE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25032== by 0x6CDAD38: PetscInitialize (pinit.c:924) +==25032== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25032== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25032== by 0x13051E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25032== by 0x12BAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25032== by 0x12E0E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25032== by 0x12DFE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25032== by 0x12E5F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25032== by 0x12A2F5: main (TestPdeTestClasses.cpp:18) +==25032== +==25032== Open file descriptor 116: +==25032== +==25032== +==25032== Open file descriptor 113: +==25032== +==25032== +==25032== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPdeTestClasses_valgrind.txt +==25032== +==25032== +==25032== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25032== +==25032== +==25032== +==25032== HEAP SUMMARY: +==25032== in use at exit: 618,238 bytes in 8,238 blocks +==25032== total heap usage: 47,536 allocs, 39,298 frees, 1,338,441,298 bytes allocated +==25032== +==25032== LEAK SUMMARY: +==25032== definitely lost: 0 bytes in 0 blocks +==25032== indirectly lost: 0 bytes in 0 blocks +==25032== possibly lost: 0 bytes in 0 blocks +==25032== still reachable: 24 bytes in 2 blocks +==25032== suppressed: 618,214 bytes in 8,236 blocks +==25032== Reachable blocks (those to which a pointer was found) are not shown. +==25032== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25032== +==25032== For lists of detected and suppressed errors, rerun with: -s +==25032== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestPerElementWriter_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPerElementWriter_valgrind.txt new file mode 100644 index 000000000..24375e340 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPerElementWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24670== Memcheck, a memory error detector +==24670== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24670== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24670== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestPerElementWriter -malloc_debug -malloc_dump -memory_info +==24670== Parent PID: 23966 +==24670== +==24670== +==24670== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24670== Open file descriptor 12: +==24670== at 0x811107D: pipe (pipe.c:29) +==24670== by 0x100D407D: ??? +==24670== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24670== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24670== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24670== by 0x6686D38: PetscInitialize (pinit.c:924) +==24670== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24670== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24670== by 0x118F70: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24670== by 0x113759: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24670== by 0x115E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24670== by 0x115D21: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24670== by 0x116335: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24670== by 0x111E15: main (TestPerElementWriter.cpp:18) +==24670== +==24670== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24670== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24670== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24670== by 0x7915822: ??? +==24670== by 0x791596F: ??? +==24670== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24670== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24670== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24670== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24670== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24670== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24670== by 0x6686D38: PetscInitialize (pinit.c:924) +==24670== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24670== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24670== by 0x118F70: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24670== by 0x113759: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24670== by 0x115E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24670== by 0x115D21: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24670== by 0x116335: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24670== by 0x111E15: main (TestPerElementWriter.cpp:18) +==24670== +==24670== Open file descriptor 116: +==24670== +==24670== +==24670== Open file descriptor 113: +==24670== +==24670== +==24670== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPerElementWriter_valgrind.txt +==24670== +==24670== +==24670== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24670== +==24670== +==24670== +==24670== HEAP SUMMARY: +==24670== in use at exit: 618,238 bytes in 8,238 blocks +==24670== total heap usage: 52,931 allocs, 44,693 frees, 1,338,982,834 bytes allocated +==24670== +==24670== LEAK SUMMARY: +==24670== definitely lost: 0 bytes in 0 blocks +==24670== indirectly lost: 0 bytes in 0 blocks +==24670== possibly lost: 0 bytes in 0 blocks +==24670== still reachable: 24 bytes in 2 blocks +==24670== suppressed: 618,214 bytes in 8,236 blocks +==24670== Reachable blocks (those to which a pointer was found) are not shown. +==24670== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24670== +==24670== For lists of detected and suppressed errors, rerun with: -s +==24670== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt new file mode 100644 index 000000000..93a1adc4b --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt @@ -0,0 +1,73 @@ +==26102== Memcheck, a memory error detector +==26102== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26102== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26102== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPeriodicNodeBasedCellPopulationParallelMethods -malloc_debug -malloc_dump -memory_info +==26102== Parent PID: 23966 +==26102== +==26102== +==26102== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26102== Open file descriptor 12: +==26102== at 0xF8E807D: pipe (pipe.c:29) +==26102== by 0x196BC07D: ??? +==26102== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26102== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26102== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26102== by 0x10218D38: PetscInitialize (pinit.c:924) +==26102== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26102== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26102== by 0x12B4BA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26102== by 0x1266B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26102== by 0x128CBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26102== by 0x128BBA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26102== by 0x1291CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26102== by 0x124EB5: main (TestPeriodicNodeBasedCellPopulationParallelMethods.cpp:18) +==26102== +==26102== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26102== at 0xF8ECA1C: __open_nocancel (open64_nocancel.c:39) +==26102== by 0xF870BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26102== by 0xF13E822: ??? +==26102== by 0xF13E96F: ??? +==26102== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26102== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26102== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26102== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26102== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26102== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26102== by 0x10218D38: PetscInitialize (pinit.c:924) +==26102== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26102== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26102== by 0x12B4BA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26102== by 0x1266B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26102== by 0x128CBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26102== by 0x128BBA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26102== by 0x1291CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26102== by 0x124EB5: main (TestPeriodicNodeBasedCellPopulationParallelMethods.cpp:18) +==26102== +==26102== Open file descriptor 116: +==26102== +==26102== +==26102== Open file descriptor 113: +==26102== +==26102== +==26102== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt +==26102== +==26102== +==26102== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26102== +==26102== +==26102== +==26102== HEAP SUMMARY: +==26102== in use at exit: 618,366 bytes in 8,239 blocks +==26102== total heap usage: 53,076 allocs, 44,837 frees, 1,338,901,895 bytes allocated +==26102== +==26102== LEAK SUMMARY: +==26102== definitely lost: 0 bytes in 0 blocks +==26102== indirectly lost: 0 bytes in 0 blocks +==26102== possibly lost: 0 bytes in 0 blocks +==26102== still reachable: 56 bytes in 3 blocks +==26102== suppressed: 618,310 bytes in 8,236 blocks +==26102== Reachable blocks (those to which a pointer was found) are not shown. +==26102== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26102== +==26102== For lists of detected and suppressed errors, rerun with: -s +==26102== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestPeriodicNodesOnlyMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPeriodicNodesOnlyMesh_valgrind.txt new file mode 100644 index 000000000..fb3aa6872 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPeriodicNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24579== Memcheck, a memory error detector +==24579== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24579== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24579== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestPeriodicNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==24579== Parent PID: 23966 +==24579== +==24579== +==24579== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24579== Open file descriptor 12: +==24579== at 0x6D8507D: pipe (pipe.c:29) +==24579== by 0x100D407D: ??? +==24579== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24579== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24579== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24579== by 0x701FD38: PetscInitialize (pinit.c:924) +==24579== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24579== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24579== by 0x1300A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24579== by 0x12AC9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24579== by 0x12DA8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24579== by 0x12D92C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24579== by 0x12DFC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24579== by 0x1290C5: main (TestPeriodicNodesOnlyMesh.cpp:19) +==24579== +==24579== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24579== at 0x6D89A1C: __open_nocancel (open64_nocancel.c:39) +==24579== by 0x6D0DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24579== by 0x6597822: ??? +==24579== by 0x659796F: ??? +==24579== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24579== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24579== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24579== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24579== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24579== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24579== by 0x701FD38: PetscInitialize (pinit.c:924) +==24579== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24579== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24579== by 0x1300A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24579== by 0x12AC9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24579== by 0x12DA8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24579== by 0x12D92C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24579== by 0x12DFC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24579== by 0x1290C5: main (TestPeriodicNodesOnlyMesh.cpp:19) +==24579== +==24579== Open file descriptor 116: +==24579== +==24579== +==24579== Open file descriptor 113: +==24579== +==24579== +==24579== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPeriodicNodesOnlyMesh_valgrind.txt +==24579== +==24579== +==24579== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24579== +==24579== +==24579== +==24579== HEAP SUMMARY: +==24579== in use at exit: 618,238 bytes in 8,238 blocks +==24579== total heap usage: 57,988 allocs, 49,750 frees, 1,341,005,182 bytes allocated +==24579== +==24579== LEAK SUMMARY: +==24579== definitely lost: 0 bytes in 0 blocks +==24579== indirectly lost: 0 bytes in 0 blocks +==24579== possibly lost: 0 bytes in 0 blocks +==24579== still reachable: 24 bytes in 2 blocks +==24579== suppressed: 618,214 bytes in 8,236 blocks +==24579== Reachable blocks (those to which a pointer was found) are not shown. +==24579== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24579== +==24579== For lists of detected and suppressed errors, rerun with: -s +==24579== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestPetscEvents_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPetscEvents_valgrind.txt new file mode 100644 index 000000000..f2a89d5ff --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPetscEvents_valgrind.txt @@ -0,0 +1,73 @@ +==24139== Memcheck, a memory error detector +==24139== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24139== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24139== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscEvents -malloc_debug -malloc_dump -memory_info +==24139== Parent PID: 23966 +==24139== +==24139== +==24139== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24139== Open file descriptor 12: +==24139== at 0x603207D: pipe (pipe.c:29) +==24139== by 0xAEAD07D: ??? +==24139== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24139== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24139== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24139== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24139== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24139== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24139== by 0x110C5A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24139== by 0x10CB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24139== by 0x10ED24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24139== by 0x10EC20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24139== by 0x10F233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24139== by 0x10B375: main (TestPetscEvents.cpp:18) +==24139== +==24139== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24139== at 0x6036A1C: __open_nocancel (open64_nocancel.c:39) +==24139== by 0x5FBABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24139== by 0x5CB2822: ??? +==24139== by 0x5CB296F: ??? +==24139== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24139== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24139== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24139== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24139== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24139== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24139== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24139== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24139== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24139== by 0x110C5A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24139== by 0x10CB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24139== by 0x10ED24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24139== by 0x10EC20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24139== by 0x10F233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24139== by 0x10B375: main (TestPetscEvents.cpp:18) +==24139== +==24139== Open file descriptor 116: +==24139== +==24139== +==24139== Open file descriptor 113: +==24139== +==24139== +==24139== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscEvents_valgrind.txt +==24139== +==24139== +==24139== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24139== +==24139== +==24139== +==24139== HEAP SUMMARY: +==24139== in use at exit: 617,870 bytes in 8,238 blocks +==24139== total heap usage: 44,912 allocs, 36,674 frees, 1,338,159,628 bytes allocated +==24139== +==24139== LEAK SUMMARY: +==24139== definitely lost: 0 bytes in 0 blocks +==24139== indirectly lost: 0 bytes in 0 blocks +==24139== possibly lost: 0 bytes in 0 blocks +==24139== still reachable: 24 bytes in 2 blocks +==24139== suppressed: 617,846 bytes in 8,236 blocks +==24139== Reachable blocks (those to which a pointer was found) are not shown. +==24139== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24139== +==24139== For lists of detected and suppressed errors, rerun with: -s +==24139== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestPetscMatTools_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPetscMatTools_valgrind.txt new file mode 100644 index 000000000..5ef3837e3 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPetscMatTools_valgrind.txt @@ -0,0 +1,73 @@ +==24304== Memcheck, a memory error detector +==24304== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24304== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24304== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPetscMatTools -malloc_debug -malloc_dump -memory_info +==24304== Parent PID: 23966 +==24304== +==24304== +==24304== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24304== Open file descriptor 12: +==24304== at 0x60C107D: pipe (pipe.c:29) +==24304== by 0xAF4107D: ??? +==24304== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24304== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24304== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24304== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24304== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24304== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24304== by 0x114148: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24304== by 0x10FD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24304== by 0x1121C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24304== by 0x1120BF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24304== by 0x1126D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24304== by 0x10E555: main (TestPetscMatTools.cpp:18) +==24304== +==24304== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24304== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24304== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24304== by 0x5D41822: ??? +==24304== by 0x5D4196F: ??? +==24304== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24304== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24304== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24304== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24304== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24304== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24304== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24304== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24304== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24304== by 0x114148: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24304== by 0x10FD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24304== by 0x1121C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24304== by 0x1120BF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24304== by 0x1126D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24304== by 0x10E555: main (TestPetscMatTools.cpp:18) +==24304== +==24304== Open file descriptor 116: +==24304== +==24304== +==24304== Open file descriptor 113: +==24304== +==24304== +==24304== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscMatTools_valgrind.txt +==24304== +==24304== +==24304== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24304== +==24304== +==24304== +==24304== HEAP SUMMARY: +==24304== in use at exit: 617,886 bytes in 8,238 blocks +==24304== total heap usage: 46,917 allocs, 38,679 frees, 1,338,407,474 bytes allocated +==24304== +==24304== LEAK SUMMARY: +==24304== definitely lost: 0 bytes in 0 blocks +==24304== indirectly lost: 0 bytes in 0 blocks +==24304== possibly lost: 0 bytes in 0 blocks +==24304== still reachable: 24 bytes in 2 blocks +==24304== suppressed: 617,862 bytes in 8,236 blocks +==24304== Reachable blocks (those to which a pointer was found) are not shown. +==24304== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24304== +==24304== For lists of detected and suppressed errors, rerun with: -s +==24304== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestPetscSetup_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPetscSetup_valgrind.txt new file mode 100644 index 000000000..b1d9472e7 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPetscSetup_valgrind.txt @@ -0,0 +1,73 @@ +==24163== Memcheck, a memory error detector +==24163== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24163== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24163== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscSetup -malloc_debug -malloc_dump -memory_info +==24163== Parent PID: 23966 +==24163== +==24163== +==24163== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24163== Open file descriptor 12: +==24163== at 0x603207D: pipe (pipe.c:29) +==24163== by 0xAEAD07D: ??? +==24163== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24163== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24163== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24163== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24163== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24163== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24163== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24163== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24163== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24163== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24163== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24163== by 0x10D8B5: main (TestPetscSetup.cpp:19) +==24163== +==24163== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24163== at 0x6036A1C: __open_nocancel (open64_nocancel.c:39) +==24163== by 0x5FBABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24163== by 0x5CB2822: ??? +==24163== by 0x5CB296F: ??? +==24163== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24163== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24163== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24163== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24163== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24163== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24163== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24163== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24163== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24163== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24163== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24163== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24163== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24163== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24163== by 0x10D8B5: main (TestPetscSetup.cpp:19) +==24163== +==24163== Open file descriptor 116: +==24163== +==24163== +==24163== Open file descriptor 113: +==24163== +==24163== +==24163== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscSetup_valgrind.txt +==24163== +==24163== +==24163== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24163== +==24163== +==24163== +==24163== HEAP SUMMARY: +==24163== in use at exit: 617,870 bytes in 8,238 blocks +==24163== total heap usage: 45,264 allocs, 37,026 frees, 1,338,215,651 bytes allocated +==24163== +==24163== LEAK SUMMARY: +==24163== definitely lost: 0 bytes in 0 blocks +==24163== indirectly lost: 0 bytes in 0 blocks +==24163== possibly lost: 0 bytes in 0 blocks +==24163== still reachable: 24 bytes in 2 blocks +==24163== suppressed: 617,846 bytes in 8,236 blocks +==24163== Reachable blocks (those to which a pointer was found) are not shown. +==24163== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24163== +==24163== For lists of detected and suppressed errors, rerun with: -s +==24163== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestPetscTools2_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPetscTools2_valgrind.txt new file mode 100644 index 000000000..91729e366 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPetscTools2_valgrind.txt @@ -0,0 +1,36 @@ +==24165== Memcheck, a memory error detector +==24165== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24165== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24165== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscTools2 -malloc_debug -malloc_dump -memory_info +==24165== Parent PID: 23966 +==24165== +==24165== +==24165== FILE DESCRIPTORS: 7 open (3 std) at exit. +==24165== Open file descriptor 116: +==24165== +==24165== +==24165== Open file descriptor 113: +==24165== +==24165== +==24165== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscTools2_valgrind.txt +==24165== +==24165== +==24165== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24165== +==24165== +==24165== +==24165== HEAP SUMMARY: +==24165== in use at exit: 24 bytes in 2 blocks +==24165== total heap usage: 3,070 allocs, 3,068 frees, 350,741 bytes allocated +==24165== +==24165== LEAK SUMMARY: +==24165== definitely lost: 0 bytes in 0 blocks +==24165== indirectly lost: 0 bytes in 0 blocks +==24165== possibly lost: 0 bytes in 0 blocks +==24165== still reachable: 24 bytes in 2 blocks +==24165== suppressed: 0 bytes in 0 blocks +==24165== Reachable blocks (those to which a pointer was found) are not shown. +==24165== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24165== +==24165== For lists of detected and suppressed errors, rerun with: -s +==24165== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-10-14_17-51-53/TestPetscTools_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPetscTools_valgrind.txt new file mode 100644 index 000000000..f6f3fb9f9 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPetscTools_valgrind.txt @@ -0,0 +1,73 @@ +==24164== Memcheck, a memory error detector +==24164== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24164== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24164== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscTools -malloc_debug -malloc_dump -memory_info +==24164== Parent PID: 23966 +==24164== +==24164== +==24164== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24164== Open file descriptor 12: +==24164== at 0x616907D: pipe (pipe.c:29) +==24164== by 0xAEAD07D: ??? +==24164== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24164== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24164== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24164== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24164== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24164== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24164== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24164== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24164== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24164== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24164== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24164== by 0x110FB5: main (TestPetscTools.cpp:19) +==24164== +==24164== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24164== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24164== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24164== by 0x5CB2822: ??? +==24164== by 0x5CB296F: ??? +==24164== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24164== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24164== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24164== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24164== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24164== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24164== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24164== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24164== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24164== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24164== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24164== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24164== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24164== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24164== by 0x110FB5: main (TestPetscTools.cpp:19) +==24164== +==24164== Open file descriptor 116: +==24164== +==24164== +==24164== Open file descriptor 113: +==24164== +==24164== +==24164== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscTools_valgrind.txt +==24164== +==24164== +==24164== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24164== +==24164== +==24164== +==24164== HEAP SUMMARY: +==24164== in use at exit: 617,870 bytes in 8,238 blocks +==24164== total heap usage: 47,877 allocs, 39,639 frees, 1,338,865,217 bytes allocated +==24164== +==24164== LEAK SUMMARY: +==24164== definitely lost: 0 bytes in 0 blocks +==24164== indirectly lost: 0 bytes in 0 blocks +==24164== possibly lost: 0 bytes in 0 blocks +==24164== still reachable: 24 bytes in 2 blocks +==24164== suppressed: 617,846 bytes in 8,236 blocks +==24164== Reachable blocks (those to which a pointer was found) are not shown. +==24164== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24164== +==24164== For lists of detected and suppressed errors, rerun with: -s +==24164== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestPetscVecTools_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPetscVecTools_valgrind.txt new file mode 100644 index 000000000..5ea180857 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPetscVecTools_valgrind.txt @@ -0,0 +1,73 @@ +==24305== Memcheck, a memory error detector +==24305== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24305== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24305== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPetscVecTools -malloc_debug -malloc_dump -memory_info +==24305== Parent PID: 23966 +==24305== +==24305== +==24305== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24305== Open file descriptor 12: +==24305== at 0x60C107D: pipe (pipe.c:29) +==24305== by 0xAF4107D: ??? +==24305== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24305== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24305== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24305== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24305== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24305== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24305== by 0x1121EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24305== by 0x10DD73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24305== by 0x11016A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24305== by 0x110065: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24305== by 0x110679: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24305== by 0x10C575: main (TestPetscVecTools.cpp:18) +==24305== +==24305== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24305== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24305== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24305== by 0x5D41822: ??? +==24305== by 0x5D4196F: ??? +==24305== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24305== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24305== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24305== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24305== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24305== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24305== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24305== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24305== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24305== by 0x1121EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24305== by 0x10DD73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24305== by 0x11016A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24305== by 0x110065: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24305== by 0x110679: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24305== by 0x10C575: main (TestPetscVecTools.cpp:18) +==24305== +==24305== Open file descriptor 116: +==24305== +==24305== +==24305== Open file descriptor 113: +==24305== +==24305== +==24305== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscVecTools_valgrind.txt +==24305== +==24305== +==24305== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24305== +==24305== +==24305== +==24305== HEAP SUMMARY: +==24305== in use at exit: 617,886 bytes in 8,238 blocks +==24305== total heap usage: 45,463 allocs, 37,225 frees, 1,338,258,442 bytes allocated +==24305== +==24305== LEAK SUMMARY: +==24305== definitely lost: 0 bytes in 0 blocks +==24305== indirectly lost: 0 bytes in 0 blocks +==24305== possibly lost: 0 bytes in 0 blocks +==24305== still reachable: 24 bytes in 2 blocks +==24305== suppressed: 617,862 bytes in 8,236 blocks +==24305== Reachable blocks (those to which a pointer was found) are not shown. +==24305== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24305== +==24305== For lists of detected and suppressed errors, rerun with: -s +==24305== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestPlaneStimulusCellFactory_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPlaneStimulusCellFactory_valgrind.txt new file mode 100644 index 000000000..03dc982a3 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPlaneStimulusCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==43471== Memcheck, a memory error detector +==43471== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43471== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43471== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPlaneStimulusCellFactory -malloc_debug -malloc_dump -memory_info +==43471== Parent PID: 23966 +==43471== +==43471== +==43471== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43471== Open file descriptor 12: +==43471== at 0xBC1007D: pipe (pipe.c:29) +==43471== by 0x1433707D: ??? +==43471== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43471== by 0xB4FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43471== by 0xB497D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43471== by 0xA16BD38: PetscInitialize (pinit.c:924) +==43471== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43471== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43471== by 0x12063D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43471== by 0x11B96D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43471== by 0x11E212: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43471== by 0x11E0B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43471== by 0x11E749: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43471== by 0x119D95: main (TestPlaneStimulusCellFactory.cpp:19) +==43471== +==43471== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43471== at 0xBC14A1C: __open_nocancel (open64_nocancel.c:39) +==43471== by 0xBB98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43471== by 0xB3FA822: ??? +==43471== by 0xB3FA96F: ??? +==43471== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43471== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43471== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43471== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43471== by 0xB4FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43471== by 0xB497D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43471== by 0xA16BD38: PetscInitialize (pinit.c:924) +==43471== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43471== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43471== by 0x12063D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43471== by 0x11B96D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43471== by 0x11E212: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43471== by 0x11E0B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43471== by 0x11E749: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43471== by 0x119D95: main (TestPlaneStimulusCellFactory.cpp:19) +==43471== +==43471== Open file descriptor 116: +==43471== +==43471== +==43471== Open file descriptor 113: +==43471== +==43471== +==43471== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPlaneStimulusCellFactory_valgrind.txt +==43471== +==43471== +==43471== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43471== +==43471== +==43471== +==43471== HEAP SUMMARY: +==43471== in use at exit: 618,350 bytes in 8,238 blocks +==43471== total heap usage: 82,003 allocs, 73,765 frees, 1,343,193,251 bytes allocated +==43471== +==43471== LEAK SUMMARY: +==43471== definitely lost: 0 bytes in 0 blocks +==43471== indirectly lost: 0 bytes in 0 blocks +==43471== possibly lost: 0 bytes in 0 blocks +==43471== still reachable: 24 bytes in 2 blocks +==43471== suppressed: 618,326 bytes in 8,236 blocks +==43471== Reachable blocks (those to which a pointer was found) are not shown. +==43471== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43471== +==43471== For lists of detected and suppressed errors, rerun with: -s +==43471== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestPostProcessingWriter_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPostProcessingWriter_valgrind.txt new file mode 100644 index 000000000..2632272e4 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPostProcessingWriter_valgrind.txt @@ -0,0 +1,73 @@ +==43419== Memcheck, a memory error detector +==43419== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43419== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43419== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPostProcessingWriter -malloc_debug -malloc_dump -memory_info +==43419== Parent PID: 23966 +==43419== +==43419== +==43419== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43419== Open file descriptor 12: +==43419== at 0xBF7807D: pipe (pipe.c:29) +==43419== by 0x1433707D: ??? +==43419== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43419== by 0xC2F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43419== by 0xC28ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43419== by 0xA60CD38: PetscInitialize (pinit.c:924) +==43419== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43419== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43419== by 0x127348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43419== by 0x1210D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43419== by 0x123BD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43419== by 0x123AD3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43419== by 0x1240E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43419== by 0x11F8D5: main (TestPostProcessingWriter.cpp:18) +==43419== +==43419== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43419== at 0xBF7CA1C: __open_nocancel (open64_nocancel.c:39) +==43419== by 0xBF00BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43419== by 0xB89B822: ??? +==43419== by 0xB89B96F: ??? +==43419== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43419== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43419== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43419== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43419== by 0xC2F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43419== by 0xC28ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43419== by 0xA60CD38: PetscInitialize (pinit.c:924) +==43419== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43419== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43419== by 0x127348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43419== by 0x1210D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43419== by 0x123BD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43419== by 0x123AD3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43419== by 0x1240E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43419== by 0x11F8D5: main (TestPostProcessingWriter.cpp:18) +==43419== +==43419== Open file descriptor 116: +==43419== +==43419== +==43419== Open file descriptor 113: +==43419== +==43419== +==43419== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPostProcessingWriter_valgrind.txt +==43419== +==43419== +==43419== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43419== +==43419== +==43419== +==43419== HEAP SUMMARY: +==43419== in use at exit: 618,759 bytes in 8,244 blocks +==43419== total heap usage: 10,863,091 allocs, 10,854,847 frees, 11,717,758,801 bytes allocated +==43419== +==43419== LEAK SUMMARY: +==43419== definitely lost: 0 bytes in 0 blocks +==43419== indirectly lost: 0 bytes in 0 blocks +==43419== possibly lost: 0 bytes in 0 blocks +==43419== still reachable: 24 bytes in 2 blocks +==43419== suppressed: 618,735 bytes in 8,242 blocks +==43419== Reachable blocks (those to which a pointer was found) are not shown. +==43419== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43419== +==43419== For lists of detected and suppressed errors, rerun with: -s +==43419== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 101 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestPottsBasedCellPopulation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPottsBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..b66a33496 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPottsBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26103== Memcheck, a memory error detector +==26103== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26103== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26103== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26103== Parent PID: 23966 +==26103== +==26103== +==26103== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26103== Open file descriptor 12: +==26103== at 0x10DE107D: pipe (pipe.c:29) +==26103== by 0x196BC07D: ??? +==26103== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26103== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26103== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26103== by 0xF292D38: PetscInitialize (pinit.c:924) +==26103== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26103== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26103== by 0x16AB57: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26103== by 0x162E49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26103== by 0x166190: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26103== by 0x166030: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26103== by 0x1666C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26103== by 0x161265: main (TestPottsBasedCellPopulation.cpp:19) +==26103== +==26103== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26103== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==26103== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26103== by 0xF13E822: ??? +==26103== by 0xF13E96F: ??? +==26103== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26103== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26103== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26103== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26103== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26103== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26103== by 0xF292D38: PetscInitialize (pinit.c:924) +==26103== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26103== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26103== by 0x16AB57: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26103== by 0x162E49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26103== by 0x166190: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26103== by 0x166030: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26103== by 0x1666C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26103== by 0x161265: main (TestPottsBasedCellPopulation.cpp:19) +==26103== +==26103== Open file descriptor 116: +==26103== +==26103== +==26103== Open file descriptor 113: +==26103== +==26103== +==26103== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsBasedCellPopulation_valgrind.txt +==26103== +==26103== +==26103== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26103== +==26103== +==26103== +==26103== HEAP SUMMARY: +==26103== in use at exit: 618,366 bytes in 8,239 blocks +==26103== total heap usage: 74,956 allocs, 66,717 frees, 1,343,982,735 bytes allocated +==26103== +==26103== LEAK SUMMARY: +==26103== definitely lost: 0 bytes in 0 blocks +==26103== indirectly lost: 0 bytes in 0 blocks +==26103== possibly lost: 0 bytes in 0 blocks +==26103== still reachable: 56 bytes in 3 blocks +==26103== suppressed: 618,310 bytes in 8,236 blocks +==26103== Reachable blocks (those to which a pointer was found) are not shown. +==26103== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26103== +==26103== For lists of detected and suppressed errors, rerun with: -s +==26103== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestPottsBasedCryptSimulation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPottsBasedCryptSimulation_valgrind.txt new file mode 100644 index 000000000..75688a992 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPottsBasedCryptSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==40675== Memcheck, a memory error detector +==40675== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40675== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40675== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestPottsBasedCryptSimulation -malloc_debug -malloc_dump -memory_info +==40675== Parent PID: 23966 +==40675== +==40675== +==40675== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40675== Open file descriptor 12: +==40675== at 0x110C107D: pipe (pipe.c:29) +==40675== by 0x1B37D07D: ??? +==40675== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40675== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40675== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40675== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40675== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40675== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40675== by 0x122076: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40675== by 0x11D6B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40675== by 0x11FAA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40675== by 0x11F9A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40675== by 0x11FFB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40675== by 0x11BEB5: main (TestPottsBasedCryptSimulation.cpp:18) +==40675== +==40675== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40675== at 0x110C5A1C: __open_nocancel (open64_nocancel.c:39) +==40675== by 0x11049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40675== by 0x109FE822: ??? +==40675== by 0x109FE96F: ??? +==40675== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40675== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40675== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40675== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40675== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40675== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40675== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40675== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40675== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40675== by 0x122076: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40675== by 0x11D6B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40675== by 0x11FAA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40675== by 0x11F9A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40675== by 0x11FFB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40675== by 0x11BEB5: main (TestPottsBasedCryptSimulation.cpp:18) +==40675== +==40675== Open file descriptor 116: +==40675== +==40675== +==40675== Open file descriptor 113: +==40675== +==40675== +==40675== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsBasedCryptSimulation_valgrind.txt +==40675== +==40675== +==40675== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40675== +==40675== +==40675== +==40675== HEAP SUMMARY: +==40675== in use at exit: 618,391 bytes in 8,236 blocks +==40675== total heap usage: 46,840,659 allocs, 46,832,423 frees, 5,592,617,311 bytes allocated +==40675== +==40675== LEAK SUMMARY: +==40675== definitely lost: 0 bytes in 0 blocks +==40675== indirectly lost: 0 bytes in 0 blocks +==40675== possibly lost: 0 bytes in 0 blocks +==40675== still reachable: 136 bytes in 4 blocks +==40675== suppressed: 618,255 bytes in 8,232 blocks +==40675== Reachable blocks (those to which a pointer was found) are not shown. +==40675== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40675== +==40675== For lists of detected and suppressed errors, rerun with: -s +==40675== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestPottsElement_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPottsElement_valgrind.txt new file mode 100644 index 000000000..dd64aeb0f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPottsElement_valgrind.txt @@ -0,0 +1,73 @@ +==25727== Memcheck, a memory error detector +==25727== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25727== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25727== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsElement -malloc_debug -malloc_dump -memory_info +==25727== Parent PID: 23966 +==25727== +==25727== +==25727== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25727== Open file descriptor 12: +==25727== at 0xF4BC07D: pipe (pipe.c:29) +==25727== by 0x196BC07D: ??? +==25727== by 0x14C6F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25727== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25727== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25727== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25727== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25727== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25727== by 0x11A5B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25727== by 0x115A6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25727== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25727== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25727== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25727== by 0x113E95: main (TestPottsElement.cpp:19) +==25727== +==25727== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25727== at 0xF4C0A1C: __open_nocancel (open64_nocancel.c:39) +==25727== by 0xF444BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25727== by 0xF13E822: ??? +==25727== by 0xF13E96F: ??? +==25727== by 0x14D146DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25727== by 0x14D14938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25727== by 0x14CCA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25727== by 0x14C6F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25727== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25727== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25727== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25727== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25727== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25727== by 0x11A5B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25727== by 0x115A6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25727== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25727== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25727== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25727== by 0x113E95: main (TestPottsElement.cpp:19) +==25727== +==25727== Open file descriptor 116: +==25727== +==25727== +==25727== Open file descriptor 113: +==25727== +==25727== +==25727== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsElement_valgrind.txt +==25727== +==25727== +==25727== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25727== +==25727== +==25727== +==25727== HEAP SUMMARY: +==25727== in use at exit: 618,334 bytes in 8,238 blocks +==25727== total heap usage: 53,131 allocs, 44,893 frees, 1,338,897,201 bytes allocated +==25727== +==25727== LEAK SUMMARY: +==25727== definitely lost: 0 bytes in 0 blocks +==25727== indirectly lost: 0 bytes in 0 blocks +==25727== possibly lost: 0 bytes in 0 blocks +==25727== still reachable: 24 bytes in 2 blocks +==25727== suppressed: 618,310 bytes in 8,236 blocks +==25727== Reachable blocks (those to which a pointer was found) are not shown. +==25727== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25727== +==25727== For lists of detected and suppressed errors, rerun with: -s +==25727== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestPottsMeshGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPottsMeshGenerator_valgrind.txt new file mode 100644 index 000000000..a10473122 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPottsMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==25795== Memcheck, a memory error detector +==25795== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25795== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25795== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshGenerator -malloc_debug -malloc_dump -memory_info +==25795== Parent PID: 23966 +==25795== +==25795== +==25795== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25795== Open file descriptor 12: +==25795== at 0xF4BC07D: pipe (pipe.c:29) +==25795== by 0x196BC07D: ??? +==25795== by 0x14C6F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25795== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25795== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25795== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25795== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25795== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25795== by 0x118EF2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25795== by 0x1145AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25795== by 0x116DAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25795== by 0x116C4D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25795== by 0x1172E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25795== by 0x1129D5: main (TestPottsMeshGenerator.cpp:19) +==25795== +==25795== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25795== at 0xF4C0A1C: __open_nocancel (open64_nocancel.c:39) +==25795== by 0xF444BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25795== by 0xF13E822: ??? +==25795== by 0xF13E96F: ??? +==25795== by 0x14D146DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25795== by 0x14D14938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25795== by 0x14CCA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25795== by 0x14C6F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25795== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25795== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25795== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25795== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25795== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25795== by 0x118EF2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25795== by 0x1145AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25795== by 0x116DAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25795== by 0x116C4D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25795== by 0x1172E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25795== by 0x1129D5: main (TestPottsMeshGenerator.cpp:19) +==25795== +==25795== Open file descriptor 116: +==25795== +==25795== +==25795== Open file descriptor 113: +==25795== +==25795== +==25795== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshGenerator_valgrind.txt +==25795== +==25795== +==25795== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25795== +==25795== +==25795== +==25795== HEAP SUMMARY: +==25795== in use at exit: 618,334 bytes in 8,238 blocks +==25795== total heap usage: 154,740 allocs, 146,502 frees, 1,343,496,834 bytes allocated +==25795== +==25795== LEAK SUMMARY: +==25795== definitely lost: 0 bytes in 0 blocks +==25795== indirectly lost: 0 bytes in 0 blocks +==25795== possibly lost: 0 bytes in 0 blocks +==25795== still reachable: 24 bytes in 2 blocks +==25795== suppressed: 618,310 bytes in 8,236 blocks +==25795== Reachable blocks (those to which a pointer was found) are not shown. +==25795== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25795== +==25795== For lists of detected and suppressed errors, rerun with: -s +==25795== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-10-14_17-51-53/TestPottsMeshReader_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPottsMeshReader_valgrind.txt new file mode 100644 index 000000000..2ea591cb4 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPottsMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==25802== Memcheck, a memory error detector +==25802== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25802== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25802== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshReader -malloc_debug -malloc_dump -memory_info +==25802== Parent PID: 23966 +==25802== +==25802== +==25802== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25802== Open file descriptor 12: +==25802== at 0xF4BC07D: pipe (pipe.c:29) +==25802== by 0x196BC07D: ??? +==25802== by 0x14C6F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25802== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25802== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25802== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25802== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25802== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25802== by 0x118F5E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25802== by 0x11450D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25802== by 0x116FE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25802== by 0x116E80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25802== by 0x117517: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25802== by 0x112935: main (TestPottsMeshReader.cpp:19) +==25802== +==25802== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25802== at 0xF4C0A1C: __open_nocancel (open64_nocancel.c:39) +==25802== by 0xF444BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25802== by 0xF13E822: ??? +==25802== by 0xF13E96F: ??? +==25802== by 0x14D146DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25802== by 0x14D14938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25802== by 0x14CCA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25802== by 0x14C6F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25802== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25802== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25802== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25802== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25802== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25802== by 0x118F5E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25802== by 0x11450D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25802== by 0x116FE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25802== by 0x116E80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25802== by 0x117517: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25802== by 0x112935: main (TestPottsMeshReader.cpp:19) +==25802== +==25802== Open file descriptor 116: +==25802== +==25802== +==25802== Open file descriptor 113: +==25802== +==25802== +==25802== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshReader_valgrind.txt +==25802== +==25802== +==25802== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25802== +==25802== +==25802== +==25802== HEAP SUMMARY: +==25802== in use at exit: 618,334 bytes in 8,238 blocks +==25802== total heap usage: 53,377 allocs, 45,139 frees, 1,339,153,962 bytes allocated +==25802== +==25802== LEAK SUMMARY: +==25802== definitely lost: 0 bytes in 0 blocks +==25802== indirectly lost: 0 bytes in 0 blocks +==25802== possibly lost: 0 bytes in 0 blocks +==25802== still reachable: 24 bytes in 2 blocks +==25802== suppressed: 618,310 bytes in 8,236 blocks +==25802== Reachable blocks (those to which a pointer was found) are not shown. +==25802== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25802== +==25802== For lists of detected and suppressed errors, rerun with: -s +==25802== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-10-14_17-51-53/TestPottsMeshWriter_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPottsMeshWriter_valgrind.txt new file mode 100644 index 000000000..619d21087 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPottsMeshWriter_valgrind.txt @@ -0,0 +1,73 @@ +==25811== Memcheck, a memory error detector +==25811== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25811== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25811== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshWriter -malloc_debug -malloc_dump -memory_info +==25811== Parent PID: 23966 +==25811== +==25811== +==25811== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25811== Open file descriptor 12: +==25811== at 0x10CB807D: pipe (pipe.c:29) +==25811== by 0x196BC07D: ??? +==25811== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25811== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25811== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25811== by 0xF22DD38: PetscInitialize (pinit.c:924) +==25811== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25811== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25811== by 0x11BA1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25811== by 0x1156B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25811== by 0x117F02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25811== by 0x117DFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25811== by 0x118411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25811== by 0x113EB5: main (TestPottsMeshWriter.cpp:18) +==25811== +==25811== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25811== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==25811== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25811== by 0x104BC822: ??? +==25811== by 0x104BC96F: ??? +==25811== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25811== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25811== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25811== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25811== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25811== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25811== by 0xF22DD38: PetscInitialize (pinit.c:924) +==25811== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25811== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25811== by 0x11BA1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25811== by 0x1156B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25811== by 0x117F02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25811== by 0x117DFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25811== by 0x118411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25811== by 0x113EB5: main (TestPottsMeshWriter.cpp:18) +==25811== +==25811== Open file descriptor 116: +==25811== +==25811== +==25811== Open file descriptor 113: +==25811== +==25811== +==25811== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshWriter_valgrind.txt +==25811== +==25811== +==25811== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25811== +==25811== +==25811== +==25811== HEAP SUMMARY: +==25811== in use at exit: 618,334 bytes in 8,238 blocks +==25811== total heap usage: 54,557 allocs, 46,319 frees, 1,339,582,304 bytes allocated +==25811== +==25811== LEAK SUMMARY: +==25811== definitely lost: 0 bytes in 0 blocks +==25811== indirectly lost: 0 bytes in 0 blocks +==25811== possibly lost: 0 bytes in 0 blocks +==25811== still reachable: 24 bytes in 2 blocks +==25811== suppressed: 618,310 bytes in 8,236 blocks +==25811== Reachable blocks (those to which a pointer was found) are not shown. +==25811== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25811== +==25811== For lists of detected and suppressed errors, rerun with: -s +==25811== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestPottsMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPottsMesh_valgrind.txt new file mode 100644 index 000000000..41c7c89b0 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPottsMesh_valgrind.txt @@ -0,0 +1,73 @@ +==25765== Memcheck, a memory error detector +==25765== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25765== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25765== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMesh -malloc_debug -malloc_dump -memory_info +==25765== Parent PID: 23966 +==25765== +==25765== +==25765== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25765== Open file descriptor 12: +==25765== at 0xF4FE07D: pipe (pipe.c:29) +==25765== by 0x196BC07D: ??? +==25765== by 0x14C6F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25765== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25765== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25765== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25765== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25765== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25765== by 0x1387B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25765== by 0x13323D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25765== by 0x136272: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25765== by 0x136112: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25765== by 0x1367A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25765== by 0x131665: main (TestPottsMesh.cpp:19) +==25765== +==25765== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25765== at 0xF502A1C: __open_nocancel (open64_nocancel.c:39) +==25765== by 0xF486BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25765== by 0xF13E822: ??? +==25765== by 0xF13E96F: ??? +==25765== by 0x14D146DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25765== by 0x14D14938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25765== by 0x14CCA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25765== by 0x14C6F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25765== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25765== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25765== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25765== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25765== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25765== by 0x1387B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25765== by 0x13323D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25765== by 0x136272: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25765== by 0x136112: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25765== by 0x1367A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25765== by 0x131665: main (TestPottsMesh.cpp:19) +==25765== +==25765== Open file descriptor 116: +==25765== +==25765== +==25765== Open file descriptor 113: +==25765== +==25765== +==25765== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMesh_valgrind.txt +==25765== +==25765== +==25765== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25765== +==25765== +==25765== +==25765== HEAP SUMMARY: +==25765== in use at exit: 618,334 bytes in 8,238 blocks +==25765== total heap usage: 79,312 allocs, 71,074 frees, 1,340,374,524 bytes allocated +==25765== +==25765== LEAK SUMMARY: +==25765== definitely lost: 0 bytes in 0 blocks +==25765== indirectly lost: 0 bytes in 0 blocks +==25765== possibly lost: 0 bytes in 0 blocks +==25765== still reachable: 24 bytes in 2 blocks +==25765== suppressed: 618,310 bytes in 8,236 blocks +==25765== Reachable blocks (those to which a pointer was found) are not shown. +==25765== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25765== +==25765== For lists of detected and suppressed errors, rerun with: -s +==25765== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestPottsUpdateRules_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPottsUpdateRules_valgrind.txt new file mode 100644 index 000000000..3593ee8ac --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPottsUpdateRules_valgrind.txt @@ -0,0 +1,73 @@ +==26104== Memcheck, a memory error detector +==26104== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26104== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26104== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsUpdateRules -malloc_debug -malloc_dump -memory_info +==26104== Parent PID: 23966 +==26104== +==26104== +==26104== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26104== Open file descriptor 12: +==26104== at 0xF09707D: pipe (pipe.c:29) +==26104== by 0x196BD07D: ??? +==26104== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26104== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26104== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26104== by 0xD62FD38: PetscInitialize (pinit.c:924) +==26104== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26104== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26104== by 0x133C55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26104== by 0x12C93D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26104== by 0x12F6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26104== by 0x12F55E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26104== by 0x12FBF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26104== by 0x12AD65: main (TestPottsUpdateRules.cpp:19) +==26104== +==26104== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26104== at 0xF09BA1C: __open_nocancel (open64_nocancel.c:39) +==26104== by 0xF01FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26104== by 0xD4D9822: ??? +==26104== by 0xD4D996F: ??? +==26104== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26104== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26104== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26104== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26104== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26104== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26104== by 0xD62FD38: PetscInitialize (pinit.c:924) +==26104== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26104== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26104== by 0x133C55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26104== by 0x12C93D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26104== by 0x12F6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26104== by 0x12F55E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26104== by 0x12FBF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26104== by 0x12AD65: main (TestPottsUpdateRules.cpp:19) +==26104== +==26104== Open file descriptor 116: +==26104== +==26104== +==26104== Open file descriptor 113: +==26104== +==26104== +==26104== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsUpdateRules_valgrind.txt +==26104== +==26104== +==26104== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26104== +==26104== +==26104== +==26104== HEAP SUMMARY: +==26104== in use at exit: 618,366 bytes in 8,239 blocks +==26104== total heap usage: 67,529 allocs, 59,290 frees, 1,339,983,626 bytes allocated +==26104== +==26104== LEAK SUMMARY: +==26104== definitely lost: 0 bytes in 0 blocks +==26104== indirectly lost: 0 bytes in 0 blocks +==26104== possibly lost: 0 bytes in 0 blocks +==26104== still reachable: 56 bytes in 3 blocks +==26104== suppressed: 618,310 bytes in 8,236 blocks +==26104== Reachable blocks (those to which a pointer was found) are not shown. +==26104== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26104== +==26104== For lists of detected and suppressed errors, rerun with: -s +==26104== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestProblemDefinitions_valgrind.txt b/log-files/2024-10-14_17-51-53/TestProblemDefinitions_valgrind.txt new file mode 100644 index 000000000..1deacc750 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestProblemDefinitions_valgrind.txt @@ -0,0 +1,73 @@ +==25275== Memcheck, a memory error detector +==25275== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25275== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25275== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestProblemDefinitions -malloc_debug -malloc_dump -memory_info +==25275== Parent PID: 23966 +==25275== +==25275== +==25275== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25275== Open file descriptor 12: +==25275== at 0x6EC307D: pipe (pipe.c:29) +==25275== by 0x106E707D: ??? +==25275== by 0xBFF44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25275== by 0x88AC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25275== by 0x8845D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25275== by 0x74FAD38: PetscInitialize (pinit.c:924) +==25275== by 0x66DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25275== by 0x66DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25275== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25275== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25275== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25275== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25275== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25275== by 0x124F95: main (TestProblemDefinitions.cpp:19) +==25275== +==25275== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25275== at 0x6EC7A1C: __open_nocancel (open64_nocancel.c:39) +==25275== by 0x6E4BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25275== by 0x6719822: ??? +==25275== by 0x671996F: ??? +==25275== by 0xC0996DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25275== by 0xC099938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25275== by 0xC04F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25275== by 0xBFF42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25275== by 0x88AC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25275== by 0x8845D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25275== by 0x74FAD38: PetscInitialize (pinit.c:924) +==25275== by 0x66DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25275== by 0x66DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25275== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25275== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25275== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25275== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25275== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25275== by 0x124F95: main (TestProblemDefinitions.cpp:19) +==25275== +==25275== Open file descriptor 116: +==25275== +==25275== +==25275== Open file descriptor 113: +==25275== +==25275== +==25275== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestProblemDefinitions_valgrind.txt +==25275== +==25275== +==25275== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25275== +==25275== +==25275== +==25275== HEAP SUMMARY: +==25275== in use at exit: 618,286 bytes in 8,238 blocks +==25275== total heap usage: 48,561 allocs, 40,323 frees, 1,338,502,918 bytes allocated +==25275== +==25275== LEAK SUMMARY: +==25275== definitely lost: 0 bytes in 0 blocks +==25275== indirectly lost: 0 bytes in 0 blocks +==25275== possibly lost: 0 bytes in 0 blocks +==25275== still reachable: 24 bytes in 2 blocks +==25275== suppressed: 618,262 bytes in 8,236 blocks +==25275== Reachable blocks (those to which a pointer was found) are not shown. +==25275== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25275== +==25275== For lists of detected and suppressed errors, rerun with: -s +==25275== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestProgressReporter_valgrind.txt b/log-files/2024-10-14_17-51-53/TestProgressReporter_valgrind.txt new file mode 100644 index 000000000..93dfa2aa4 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestProgressReporter_valgrind.txt @@ -0,0 +1,73 @@ +==24166== Memcheck, a memory error detector +==24166== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24166== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24166== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestProgressReporter -malloc_debug -malloc_dump -memory_info +==24166== Parent PID: 23966 +==24166== +==24166== +==24166== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24166== Open file descriptor 12: +==24166== at 0x616907D: pipe (pipe.c:29) +==24166== by 0xAEAD07D: ??? +==24166== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24166== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24166== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24166== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24166== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24166== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24166== by 0x118E11: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24166== by 0x11280D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24166== by 0x1150D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24166== by 0x114F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24166== by 0x11560B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24166== by 0x110C35: main (TestProgressReporter.cpp:19) +==24166== +==24166== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24166== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24166== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24166== by 0x5CB2822: ??? +==24166== by 0x5CB296F: ??? +==24166== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24166== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24166== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24166== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24166== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24166== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24166== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24166== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24166== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24166== by 0x118E11: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24166== by 0x11280D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24166== by 0x1150D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24166== by 0x114F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24166== by 0x11560B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24166== by 0x110C35: main (TestProgressReporter.cpp:19) +==24166== +==24166== Open file descriptor 116: +==24166== +==24166== +==24166== Open file descriptor 113: +==24166== +==24166== +==24166== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestProgressReporter_valgrind.txt +==24166== +==24166== +==24166== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24166== +==24166== +==24166== +==24166== HEAP SUMMARY: +==24166== in use at exit: 617,870 bytes in 8,238 blocks +==24166== total heap usage: 45,067 allocs, 36,829 frees, 1,338,281,926 bytes allocated +==24166== +==24166== LEAK SUMMARY: +==24166== definitely lost: 0 bytes in 0 blocks +==24166== indirectly lost: 0 bytes in 0 blocks +==24166== possibly lost: 0 bytes in 0 blocks +==24166== still reachable: 24 bytes in 2 blocks +==24166== suppressed: 617,846 bytes in 8,236 blocks +==24166== Reachable blocks (those to which a pointer was found) are not shown. +==24166== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24166== +==24166== For lists of detected and suppressed errors, rerun with: -s +==24166== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestPropagationPropertiesCalculator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPropagationPropertiesCalculator_valgrind.txt new file mode 100644 index 000000000..29d9ce2a9 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPropagationPropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==43432== Memcheck, a memory error detector +==43432== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43432== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43432== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPropagationPropertiesCalculator -malloc_debug -malloc_dump -memory_info +==43432== Parent PID: 23966 +==43432== +==43432== +==43432== FILE DESCRIPTORS: 7 open (3 std) at exit. +==43432== Open file descriptor 116: +==43432== +==43432== +==43432== Open file descriptor 113: +==43432== +==43432== +==43432== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPropagationPropertiesCalculator_valgrind.txt +==43432== +==43432== +==43432== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43432== +==43432== +==43432== +==43432== HEAP SUMMARY: +==43432== in use at exit: 24 bytes in 2 blocks +==43432== total heap usage: 14,997,641 allocs, 14,997,639 frees, 9,167,962,367 bytes allocated +==43432== +==43432== LEAK SUMMARY: +==43432== definitely lost: 0 bytes in 0 blocks +==43432== indirectly lost: 0 bytes in 0 blocks +==43432== possibly lost: 0 bytes in 0 blocks +==43432== still reachable: 24 bytes in 2 blocks +==43432== suppressed: 0 bytes in 0 blocks +==43432== Reachable blocks (those to which a pointer was found) are not shown. +==43432== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43432== +==43432== For lists of detected and suppressed errors, rerun with: -s +==43432== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-10-14_17-51-53/TestPseudoEcgCalculator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestPseudoEcgCalculator_valgrind.txt new file mode 100644 index 000000000..d3cf92793 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestPseudoEcgCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==43443== Memcheck, a memory error detector +==43443== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43443== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43443== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPseudoEcgCalculator -malloc_debug -malloc_dump -memory_info +==43443== Parent PID: 23966 +==43443== +==43443== +==43443== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43443== Open file descriptor 12: +==43443== at 0xBB4C07D: pipe (pipe.c:29) +==43443== by 0x1433707D: ??? +==43443== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43443== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43443== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43443== by 0xA1DED38: PetscInitialize (pinit.c:924) +==43443== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43443== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43443== by 0x1233A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43443== by 0x11E38D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43443== by 0x120E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43443== by 0x120CC6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43443== by 0x12135D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43443== by 0x11C615: main (TestPseudoEcgCalculator.cpp:19) +==43443== +==43443== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43443== at 0xBB50A1C: __open_nocancel (open64_nocancel.c:39) +==43443== by 0xBAD4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43443== by 0xB46D822: ??? +==43443== by 0xB46D96F: ??? +==43443== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43443== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43443== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43443== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43443== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43443== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43443== by 0xA1DED38: PetscInitialize (pinit.c:924) +==43443== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43443== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43443== by 0x1233A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43443== by 0x11E38D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43443== by 0x120E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43443== by 0x120CC6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43443== by 0x12135D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43443== by 0x11C615: main (TestPseudoEcgCalculator.cpp:19) +==43443== +==43443== Open file descriptor 116: +==43443== +==43443== +==43443== Open file descriptor 113: +==43443== +==43443== +==43443== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPseudoEcgCalculator_valgrind.txt +==43443== +==43443== +==43443== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43443== +==43443== +==43443== +==43443== HEAP SUMMARY: +==43443== in use at exit: 618,830 bytes in 8,248 blocks +==43443== total heap usage: 282,960 allocs, 274,712 frees, 1,373,756,883 bytes allocated +==43443== +==43443== LEAK SUMMARY: +==43443== definitely lost: 0 bytes in 0 blocks +==43443== indirectly lost: 0 bytes in 0 blocks +==43443== possibly lost: 0 bytes in 0 blocks +==43443== still reachable: 24 bytes in 2 blocks +==43443== suppressed: 618,806 bytes in 8,246 blocks +==43443== Reachable blocks (those to which a pointer was found) are not shown. +==43443== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43443== +==43443== For lists of detected and suppressed errors, rerun with: -s +==43443== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 38) diff --git a/log-files/2024-10-14_17-51-53/TestQuadraticBasisFunction_valgrind.txt b/log-files/2024-10-14_17-51-53/TestQuadraticBasisFunction_valgrind.txt new file mode 100644 index 000000000..d7f542bb7 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestQuadraticBasisFunction_valgrind.txt @@ -0,0 +1,73 @@ +==25198== Memcheck, a memory error detector +==25198== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25198== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25198== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestQuadraticBasisFunction -malloc_debug -malloc_dump -memory_info +==25198== Parent PID: 23966 +==25198== +==25198== +==25198== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25198== Open file descriptor 12: +==25198== at 0x6CB407D: pipe (pipe.c:29) +==25198== by 0x104E607D: ??? +==25198== by 0xC3264CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25198== by 0x8728418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25198== by 0x86C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25198== by 0x7003D38: PetscInitialize (pinit.c:924) +==25198== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25198== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25198== by 0x12166A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25198== by 0x11D0F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25198== by 0x11F5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25198== by 0x11F4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25198== by 0x11FB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25198== by 0x11B8F5: main (TestQuadraticBasisFunction.cpp:18) +==25198== +==25198== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25198== at 0x6CB8A1C: __open_nocancel (open64_nocancel.c:39) +==25198== by 0x6C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25198== by 0x6936822: ??? +==25198== by 0x693696F: ??? +==25198== by 0xC3CD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25198== by 0xC3CD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25198== by 0xC383922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25198== by 0xC3262DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25198== by 0x8728418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25198== by 0x86C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25198== by 0x7003D38: PetscInitialize (pinit.c:924) +==25198== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25198== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25198== by 0x12166A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25198== by 0x11D0F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25198== by 0x11F5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25198== by 0x11F4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25198== by 0x11FB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25198== by 0x11B8F5: main (TestQuadraticBasisFunction.cpp:18) +==25198== +==25198== Open file descriptor 116: +==25198== +==25198== +==25198== Open file descriptor 113: +==25198== +==25198== +==25198== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraticBasisFunction_valgrind.txt +==25198== +==25198== +==25198== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25198== +==25198== +==25198== +==25198== HEAP SUMMARY: +==25198== in use at exit: 618,270 bytes in 8,238 blocks +==25198== total heap usage: 47,376 allocs, 39,138 frees, 1,338,387,943 bytes allocated +==25198== +==25198== LEAK SUMMARY: +==25198== definitely lost: 0 bytes in 0 blocks +==25198== indirectly lost: 0 bytes in 0 blocks +==25198== possibly lost: 0 bytes in 0 blocks +==25198== still reachable: 24 bytes in 2 blocks +==25198== suppressed: 618,246 bytes in 8,236 blocks +==25198== Reachable blocks (those to which a pointer was found) are not shown. +==25198== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25198== +==25198== For lists of detected and suppressed errors, rerun with: -s +==25198== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestQuadraticMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestQuadraticMesh_valgrind.txt new file mode 100644 index 000000000..1d4300af8 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestQuadraticMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24439== Memcheck, a memory error detector +==24439== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24439== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24439== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestQuadraticMesh -malloc_debug -malloc_dump -memory_info +==24439== Parent PID: 23966 +==24439== +==24439== +==24439== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24439== Open file descriptor 12: +==24439== at 0x6D8507D: pipe (pipe.c:29) +==24439== by 0x100D407D: ??? +==24439== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24439== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24439== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24439== by 0x701FD38: PetscInitialize (pinit.c:924) +==24439== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24439== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24439== by 0x12FAA4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24439== by 0x12A6FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24439== by 0x12D700: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24439== by 0x12D5A0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24439== by 0x12DC37: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24439== by 0x128B25: main (TestQuadraticMesh.cpp:19) +==24439== +==24439== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24439== at 0x6D89A1C: __open_nocancel (open64_nocancel.c:39) +==24439== by 0x6D0DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24439== by 0x6597822: ??? +==24439== by 0x659796F: ??? +==24439== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24439== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24439== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24439== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24439== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24439== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24439== by 0x701FD38: PetscInitialize (pinit.c:924) +==24439== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24439== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24439== by 0x12FAA4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24439== by 0x12A6FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24439== by 0x12D700: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24439== by 0x12D5A0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24439== by 0x12DC37: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24439== by 0x128B25: main (TestQuadraticMesh.cpp:19) +==24439== +==24439== Open file descriptor 116: +==24439== +==24439== +==24439== Open file descriptor 113: +==24439== +==24439== +==24439== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraticMesh_valgrind.txt +==24439== +==24439== +==24439== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24439== +==24439== +==24439== +==24439== HEAP SUMMARY: +==24439== in use at exit: 618,238 bytes in 8,238 blocks +==24439== total heap usage: 721,070 allocs, 712,832 frees, 1,393,906,699 bytes allocated +==24439== +==24439== LEAK SUMMARY: +==24439== definitely lost: 0 bytes in 0 blocks +==24439== indirectly lost: 0 bytes in 0 blocks +==24439== possibly lost: 0 bytes in 0 blocks +==24439== still reachable: 24 bytes in 2 blocks +==24439== suppressed: 618,214 bytes in 8,236 blocks +==24439== Reachable blocks (those to which a pointer was found) are not shown. +==24439== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24439== +==24439== For lists of detected and suppressed errors, rerun with: -s +==24439== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 2271 from 36) diff --git a/log-files/2024-10-14_17-51-53/TestQuadraturePointsGroup_valgrind.txt b/log-files/2024-10-14_17-51-53/TestQuadraturePointsGroup_valgrind.txt new file mode 100644 index 000000000..1adf61b30 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestQuadraturePointsGroup_valgrind.txt @@ -0,0 +1,73 @@ +==25199== Memcheck, a memory error detector +==25199== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25199== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25199== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestQuadraturePointsGroup -malloc_debug -malloc_dump -memory_info +==25199== Parent PID: 23966 +==25199== +==25199== +==25199== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25199== Open file descriptor 12: +==25199== at 0x6FF907D: pipe (pipe.c:29) +==25199== by 0x104E607D: ??? +==25199== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25199== by 0x8A6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25199== by 0x8A06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25199== by 0x7348D38: PetscInitialize (pinit.c:924) +==25199== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25199== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25199== by 0x11DFB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25199== by 0x11972D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25199== by 0x11BD38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25199== by 0x11BBD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25199== by 0x11C26F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25199== by 0x117B55: main (TestQuadraturePointsGroup.cpp:19) +==25199== +==25199== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25199== at 0x6FFDA1C: __open_nocancel (open64_nocancel.c:39) +==25199== by 0x6F81BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25199== by 0x6936822: ??? +==25199== by 0x693696F: ??? +==25199== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25199== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25199== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25199== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25199== by 0x8A6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25199== by 0x8A06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25199== by 0x7348D38: PetscInitialize (pinit.c:924) +==25199== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25199== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25199== by 0x11DFB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25199== by 0x11972D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25199== by 0x11BD38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25199== by 0x11BBD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25199== by 0x11C26F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25199== by 0x117B55: main (TestQuadraturePointsGroup.cpp:19) +==25199== +==25199== Open file descriptor 116: +==25199== +==25199== +==25199== Open file descriptor 113: +==25199== +==25199== +==25199== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraturePointsGroup_valgrind.txt +==25199== +==25199== +==25199== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25199== +==25199== +==25199== +==25199== HEAP SUMMARY: +==25199== in use at exit: 618,270 bytes in 8,238 blocks +==25199== total heap usage: 48,440 allocs, 40,202 frees, 1,338,877,996 bytes allocated +==25199== +==25199== LEAK SUMMARY: +==25199== definitely lost: 0 bytes in 0 blocks +==25199== indirectly lost: 0 bytes in 0 blocks +==25199== possibly lost: 0 bytes in 0 blocks +==25199== still reachable: 24 bytes in 2 blocks +==25199== suppressed: 618,246 bytes in 8,236 blocks +==25199== Reachable blocks (those to which a pointer was found) are not shown. +==25199== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25199== +==25199== For lists of detected and suppressed errors, rerun with: -s +==25199== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestRKC21IvpOdeSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRKC21IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..f4f9d8f51 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRKC21IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24966== Memcheck, a memory error detector +==24966== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24966== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24966== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestRKC21IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24966== Parent PID: 23966 +==24966== +==24966== +==24966== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24966== Open file descriptor 12: +==24966== at 0x503907D: pipe (pipe.c:29) +==24966== by 0xB1EE07D: ??? +==24966== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24966== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24966== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24966== by 0x5308D38: PetscInitialize (pinit.c:924) +==24966== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24966== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24966== by 0x127042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24966== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24966== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24966== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24966== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24966== by 0x11EEA5: main (TestRKC21IvpOdeSolver.cpp:19) +==24966== +==24966== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24966== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24966== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24966== by 0x4B76822: ??? +==24966== by 0x4B7696F: ??? +==24966== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24966== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24966== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24966== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24966== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24966== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24966== by 0x5308D38: PetscInitialize (pinit.c:924) +==24966== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24966== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24966== by 0x127042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24966== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24966== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24966== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24966== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24966== by 0x11EEA5: main (TestRKC21IvpOdeSolver.cpp:19) +==24966== +==24966== Open file descriptor 116: +==24966== +==24966== +==24966== Open file descriptor 113: +==24966== +==24966== +==24966== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRKC21IvpOdeSolver_valgrind.txt +==24966== +==24966== +==24966== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24966== +==24966== +==24966== +==24966== HEAP SUMMARY: +==24966== in use at exit: 617,934 bytes in 8,238 blocks +==24966== total heap usage: 85,381 allocs, 77,143 frees, 1,339,005,970 bytes allocated +==24966== +==24966== LEAK SUMMARY: +==24966== definitely lost: 0 bytes in 0 blocks +==24966== indirectly lost: 0 bytes in 0 blocks +==24966== possibly lost: 0 bytes in 0 blocks +==24966== still reachable: 24 bytes in 2 blocks +==24966== suppressed: 617,910 bytes in 8,236 blocks +==24966== Reachable blocks (those to which a pointer was found) are not shown. +==24966== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24966== +==24966== For lists of detected and suppressed errors, rerun with: -s +==24966== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestRandomNumberGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRandomNumberGenerator_valgrind.txt new file mode 100644 index 000000000..2b5af0e39 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRandomNumberGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24168== Memcheck, a memory error detector +==24168== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24168== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24168== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestRandomNumberGenerator -malloc_debug -malloc_dump -memory_info +==24168== Parent PID: 23966 +==24168== +==24168== +==24168== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24168== Open file descriptor 12: +==24168== at 0x61AB07D: pipe (pipe.c:29) +==24168== by 0xAEAD07D: ??? +==24168== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24168== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24168== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24168== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24168== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24168== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24168== by 0x122A91: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24168== by 0x11DA0F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24168== by 0x1202C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24168== by 0x1201BD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24168== by 0x1207D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24168== by 0x11C205: main (TestRandomNumberGenerator.cpp:18) +==24168== +==24168== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24168== at 0x61AFA1C: __open_nocancel (open64_nocancel.c:39) +==24168== by 0x6133BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24168== by 0x4934822: ??? +==24168== by 0x493496F: ??? +==24168== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24168== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24168== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24168== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24168== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24168== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24168== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24168== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24168== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24168== by 0x122A91: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24168== by 0x11DA0F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24168== by 0x1202C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24168== by 0x1201BD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24168== by 0x1207D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24168== by 0x11C205: main (TestRandomNumberGenerator.cpp:18) +==24168== +==24168== Open file descriptor 116: +==24168== +==24168== +==24168== Open file descriptor 113: +==24168== +==24168== +==24168== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRandomNumberGenerator_valgrind.txt +==24168== +==24168== +==24168== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24168== +==24168== +==24168== +==24168== HEAP SUMMARY: +==24168== in use at exit: 620,422 bytes in 8,239 blocks +==24168== total heap usage: 45,033 allocs, 36,794 frees, 1,338,252,656 bytes allocated +==24168== +==24168== LEAK SUMMARY: +==24168== definitely lost: 0 bytes in 0 blocks +==24168== indirectly lost: 0 bytes in 0 blocks +==24168== possibly lost: 0 bytes in 0 blocks +==24168== still reachable: 2,576 bytes in 3 blocks +==24168== suppressed: 617,846 bytes in 8,236 blocks +==24168== Reachable blocks (those to which a pointer was found) are not shown. +==24168== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24168== +==24168== For lists of detected and suppressed errors, rerun with: -s +==24168== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestReplicatableVector_valgrind.txt b/log-files/2024-10-14_17-51-53/TestReplicatableVector_valgrind.txt new file mode 100644 index 000000000..993c3975a --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestReplicatableVector_valgrind.txt @@ -0,0 +1,73 @@ +==24193== Memcheck, a memory error detector +==24193== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24193== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24193== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestReplicatableVector -malloc_debug -malloc_dump -memory_info +==24193== Parent PID: 23966 +==24193== +==24193== +==24193== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24193== Open file descriptor 12: +==24193== at 0x603207D: pipe (pipe.c:29) +==24193== by 0xAEAD07D: ??? +==24193== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24193== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24193== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24193== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24193== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24193== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24193== by 0x1121BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24193== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24193== by 0x110288: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24193== by 0x110183: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24193== by 0x110797: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24193== by 0x10C555: main (TestReplicatableVector.cpp:18) +==24193== +==24193== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24193== at 0x6036A1C: __open_nocancel (open64_nocancel.c:39) +==24193== by 0x5FBABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24193== by 0x5CB2822: ??? +==24193== by 0x5CB296F: ??? +==24193== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24193== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24193== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24193== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24193== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24193== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24193== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24193== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24193== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24193== by 0x1121BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24193== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24193== by 0x110288: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24193== by 0x110183: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24193== by 0x110797: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24193== by 0x10C555: main (TestReplicatableVector.cpp:18) +==24193== +==24193== Open file descriptor 116: +==24193== +==24193== +==24193== Open file descriptor 113: +==24193== +==24193== +==24193== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestReplicatableVector_valgrind.txt +==24193== +==24193== +==24193== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24193== +==24193== +==24193== +==24193== HEAP SUMMARY: +==24193== in use at exit: 617,870 bytes in 8,238 blocks +==24193== total heap usage: 47,502 allocs, 39,264 frees, 1,338,612,693 bytes allocated +==24193== +==24193== LEAK SUMMARY: +==24193== definitely lost: 0 bytes in 0 blocks +==24193== indirectly lost: 0 bytes in 0 blocks +==24193== possibly lost: 0 bytes in 0 blocks +==24193== still reachable: 24 bytes in 2 blocks +==24193== suppressed: 617,846 bytes in 8,236 blocks +==24193== Reachable blocks (those to which a pointer was found) are not shown. +==24193== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24193== +==24193== For lists of detected and suppressed errors, rerun with: -s +==24193== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestRepresentativeImmersedBoundarySimulations_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRepresentativeImmersedBoundarySimulations_valgrind.txt new file mode 100644 index 000000000..989ac5818 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRepresentativeImmersedBoundarySimulations_valgrind.txt @@ -0,0 +1,73 @@ +==26400== Memcheck, a memory error detector +==26400== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26400== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26400== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRepresentativeImmersedBoundarySimulations -malloc_debug -malloc_dump -memory_info +==26400== Parent PID: 23966 +==26400== +==26400== +==26400== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26400== Open file descriptor 12: +==26400== at 0x10CB807D: pipe (pipe.c:29) +==26400== by 0x196BC07D: ??? +==26400== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26400== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26400== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26400== by 0xF22DD38: PetscInitialize (pinit.c:924) +==26400== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26400== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26400== by 0x12B28D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26400== by 0x126793: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26400== by 0x128B70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26400== by 0x128A6B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26400== by 0x12907F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26400== by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18) +==26400== +==26400== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26400== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==26400== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26400== by 0x104BC822: ??? +==26400== by 0x104BC96F: ??? +==26400== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26400== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26400== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26400== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26400== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26400== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26400== by 0xF22DD38: PetscInitialize (pinit.c:924) +==26400== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26400== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26400== by 0x12B28D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26400== by 0x126793: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26400== by 0x128B70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26400== by 0x128A6B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26400== by 0x12907F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26400== by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18) +==26400== +==26400== Open file descriptor 116: +==26400== +==26400== +==26400== Open file descriptor 113: +==26400== +==26400== +==26400== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRepresentativeImmersedBoundarySimulations_valgrind.txt +==26400== +==26400== +==26400== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26400== +==26400== +==26400== +==26400== HEAP SUMMARY: +==26400== in use at exit: 618,295 bytes in 8,235 blocks +==26400== total heap usage: 2,315,234 allocs, 2,306,999 frees, 2,101,667,981 bytes allocated +==26400== +==26400== LEAK SUMMARY: +==26400== definitely lost: 0 bytes in 0 blocks +==26400== indirectly lost: 0 bytes in 0 blocks +==26400== possibly lost: 0 bytes in 0 blocks +==26400== still reachable: 56 bytes in 3 blocks +==26400== suppressed: 618,239 bytes in 8,232 blocks +==26400== Reachable blocks (those to which a pointer was found) are not shown. +==26400== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26400== +==26400== For lists of detected and suppressed errors, rerun with: -s +==26400== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestRestitutionStimuli_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRestitutionStimuli_valgrind.txt new file mode 100644 index 000000000..3df374061 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRestitutionStimuli_valgrind.txt @@ -0,0 +1,73 @@ +==43484== Memcheck, a memory error detector +==43484== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43484== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43484== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestRestitutionStimuli -malloc_debug -malloc_dump -memory_info +==43484== Parent PID: 23966 +==43484== +==43484== +==43484== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43484== Open file descriptor 12: +==43484== at 0x9A6807D: pipe (pipe.c:29) +==43484== by 0x1433707D: ??? +==43484== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43484== by 0x969B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43484== by 0x9634D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43484== by 0x832BD38: PetscInitialize (pinit.c:924) +==43484== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43484== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43484== by 0x1227E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43484== by 0x11DA5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43484== by 0x12049C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43484== by 0x12033C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43484== by 0x1209D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43484== by 0x11BE85: main (TestRestitutionStimuli.cpp:19) +==43484== +==43484== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43484== at 0x9A6CA1C: __open_nocancel (open64_nocancel.c:39) +==43484== by 0x99F0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43484== by 0x81D5822: ??? +==43484== by 0x81D596F: ??? +==43484== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43484== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43484== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43484== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43484== by 0x969B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43484== by 0x9634D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43484== by 0x832BD38: PetscInitialize (pinit.c:924) +==43484== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43484== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43484== by 0x1227E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43484== by 0x11DA5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43484== by 0x12049C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43484== by 0x12033C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43484== by 0x1209D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43484== by 0x11BE85: main (TestRestitutionStimuli.cpp:19) +==43484== +==43484== Open file descriptor 116: +==43484== +==43484== +==43484== Open file descriptor 113: +==43484== +==43484== +==43484== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRestitutionStimuli_valgrind.txt +==43484== +==43484== +==43484== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43484== +==43484== +==43484== +==43484== HEAP SUMMARY: +==43484== in use at exit: 618,350 bytes in 8,238 blocks +==43484== total heap usage: 49,257 allocs, 41,019 frees, 1,338,586,925 bytes allocated +==43484== +==43484== LEAK SUMMARY: +==43484== definitely lost: 0 bytes in 0 blocks +==43484== indirectly lost: 0 bytes in 0 blocks +==43484== possibly lost: 0 bytes in 0 blocks +==43484== still reachable: 24 bytes in 2 blocks +==43484== suppressed: 618,326 bytes in 8,236 blocks +==43484== Reachable blocks (those to which a pointer was found) are not shown. +==43484== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43484== +==43484== For lists of detected and suppressed errors, rerun with: -s +==43484== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..2eaac803a --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24967== Memcheck, a memory error detector +==24967== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24967== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24967== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestRungeKuttaFehlbergIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24967== Parent PID: 23966 +==24967== +==24967== +==24967== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24967== Open file descriptor 12: +==24967== at 0x64F007D: pipe (pipe.c:29) +==24967== by 0xB1EC07D: ??? +==24967== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24967== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24967== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24967== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24967== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24967== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24967== by 0x129E27: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24967== by 0x123D15: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24967== by 0x126B50: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24967== by 0x1269F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24967== by 0x127087: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24967== by 0x121085: main (TestRungeKuttaFehlbergIvpOdeSolver.cpp:19) +==24967== +==24967== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24967== at 0x64F4A1C: __open_nocancel (open64_nocancel.c:39) +==24967== by 0x6478BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24967== by 0x4B76822: ??? +==24967== by 0x4B7696F: ??? +==24967== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24967== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24967== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24967== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24967== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24967== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24967== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24967== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24967== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24967== by 0x129E27: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24967== by 0x123D15: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24967== by 0x126B50: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24967== by 0x1269F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24967== by 0x127087: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24967== by 0x121085: main (TestRungeKuttaFehlbergIvpOdeSolver.cpp:19) +==24967== +==24967== Open file descriptor 116: +==24967== +==24967== +==24967== Open file descriptor 113: +==24967== +==24967== +==24967== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt +==24967== +==24967== +==24967== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24967== +==24967== +==24967== +==24967== HEAP SUMMARY: +==24967== in use at exit: 617,934 bytes in 8,238 blocks +==24967== total heap usage: 45,769 allocs, 37,531 frees, 1,338,245,016 bytes allocated +==24967== +==24967== LEAK SUMMARY: +==24967== definitely lost: 0 bytes in 0 blocks +==24967== indirectly lost: 0 bytes in 0 blocks +==24967== possibly lost: 0 bytes in 0 blocks +==24967== still reachable: 24 bytes in 2 blocks +==24967== suppressed: 617,910 bytes in 8,236 blocks +==24967== Reachable blocks (those to which a pointer was found) are not shown. +==24967== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24967== +==24967== For lists of detected and suppressed errors, rerun with: -s +==24967== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..d20ae8b62 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39952== Memcheck, a memory error detector +==39952== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39952== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39952== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningContactInhibitionSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==39952== Parent PID: 23966 +==39952== +==39952== +==39952== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39952== Open file descriptor 12: +==39952== at 0x10D9F07D: pipe (pipe.c:29) +==39952== by 0x196BC07D: ??? +==39952== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39952== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39952== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39952== by 0xF22DD38: PetscInitialize (pinit.c:924) +==39952== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39952== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39952== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39952== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39952== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39952== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39952== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39952== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) +==39952== +==39952== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39952== at 0x10DA3A1C: __open_nocancel (open64_nocancel.c:39) +==39952== by 0x10D27BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39952== by 0x104BC822: ??? +==39952== by 0x104BC96F: ??? +==39952== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39952== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39952== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39952== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39952== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39952== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39952== by 0xF22DD38: PetscInitialize (pinit.c:924) +==39952== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39952== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39952== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39952== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39952== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39952== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39952== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39952== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) +==39952== +==39952== Open file descriptor 116: +==39952== +==39952== +==39952== Open file descriptor 113: +==39952== +==39952== +==39952== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt +==39952== +==39952== +==39952== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39952== +==39952== +==39952== +==39952== HEAP SUMMARY: +==39952== in use at exit: 618,295 bytes in 8,235 blocks +==39952== total heap usage: 11,260,185 allocs, 11,251,950 frees, 4,769,460,313 bytes allocated +==39952== +==39952== LEAK SUMMARY: +==39952== definitely lost: 0 bytes in 0 blocks +==39952== indirectly lost: 0 bytes in 0 blocks +==39952== possibly lost: 0 bytes in 0 blocks +==39952== still reachable: 56 bytes in 3 blocks +==39952== suppressed: 618,239 bytes in 8,232 blocks +==39952== Reachable blocks (those to which a pointer was found) are not shown. +==39952== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39952== +==39952== For lists of detected and suppressed errors, rerun with: -s +==39952== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt new file mode 100644 index 000000000..0eb7baac4 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40845== Memcheck, a memory error detector +==40845== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40845== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40845== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info +==40845== Parent PID: 23966 +==40845== +==40845== +==40845== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40845== Open file descriptor 12: +==40845== at 0x1257807D: pipe (pipe.c:29) +==40845== by 0x1B37E07D: ??? +==40845== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40845== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40845== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40845== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40845== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40845== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40845== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40845== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40845== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40845== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40845== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40845== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) +==40845== +==40845== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40845== at 0x1257CA1C: __open_nocancel (open64_nocancel.c:39) +==40845== by 0x12500BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40845== by 0x11D7C822: ??? +==40845== by 0x11D7C96F: ??? +==40845== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40845== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40845== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40845== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40845== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40845== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40845== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40845== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40845== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40845== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40845== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40845== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40845== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40845== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40845== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) +==40845== +==40845== Open file descriptor 116: +==40845== +==40845== +==40845== Open file descriptor 113: +==40845== +==40845== +==40845== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt +==40845== +==40845== +==40845== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40845== +==40845== +==40845== +==40845== HEAP SUMMARY: +==40845== in use at exit: 618,311 bytes in 8,235 blocks +==40845== total heap usage: 16,190,851 allocs, 16,182,616 frees, 2,829,843,405 bytes allocated +==40845== +==40845== LEAK SUMMARY: +==40845== definitely lost: 0 bytes in 0 blocks +==40845== indirectly lost: 0 bytes in 0 blocks +==40845== possibly lost: 0 bytes in 0 blocks +==40845== still reachable: 56 bytes in 3 blocks +==40845== suppressed: 618,255 bytes in 8,232 blocks +==40845== Reachable blocks (those to which a pointer was found) are not shown. +==40845== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40845== +==40845== For lists of detected and suppressed errors, rerun with: -s +==40845== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..00226e63a --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39991== Memcheck, a memory error detector +==39991== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39991== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39991== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==39991== Parent PID: 23966 +==39991== +==39991== +==39991== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39991== Open file descriptor 12: +==39991== at 0xF80107D: pipe (pipe.c:29) +==39991== by 0x196BC07D: ??? +==39991== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39991== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39991== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39991== by 0x1012FD38: PetscInitialize (pinit.c:924) +==39991== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39991== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39991== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39991== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39991== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39991== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39991== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39991== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) +==39991== +==39991== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39991== at 0xF805A1C: __open_nocancel (open64_nocancel.c:39) +==39991== by 0xF789BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39991== by 0xF13E822: ??? +==39991== by 0xF13E96F: ??? +==39991== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39991== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39991== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39991== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39991== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39991== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39991== by 0x1012FD38: PetscInitialize (pinit.c:924) +==39991== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39991== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39991== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39991== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39991== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39991== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39991== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39991== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) +==39991== +==39991== Open file descriptor 116: +==39991== +==39991== +==39991== Open file descriptor 113: +==39991== +==39991== +==39991== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt +==39991== +==39991== +==39991== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39991== +==39991== +==39991== +==39991== HEAP SUMMARY: +==39991== in use at exit: 618,295 bytes in 8,235 blocks +==39991== total heap usage: 5,222,268 allocs, 5,214,033 frees, 1,778,261,023 bytes allocated +==39991== +==39991== LEAK SUMMARY: +==39991== definitely lost: 0 bytes in 0 blocks +==39991== indirectly lost: 0 bytes in 0 blocks +==39991== possibly lost: 0 bytes in 0 blocks +==39991== still reachable: 56 bytes in 3 blocks +==39991== suppressed: 618,239 bytes in 8,232 blocks +==39991== Reachable blocks (those to which a pointer was found) are not shown. +==39991== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39991== +==39991== For lists of detected and suppressed errors, rerun with: -s +==39991== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 32 from 32) diff --git a/log-files/2024-10-14_17-51-53/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..84c41523a --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40018== Memcheck, a memory error detector +==40018== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40018== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40018== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDifferentialAdhesionSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40018== Parent PID: 23966 +==40018== +==40018== +==40018== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40018== Open file descriptor 12: +==40018== at 0x10CB807D: pipe (pipe.c:29) +==40018== by 0x196BC07D: ??? +==40018== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40018== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40018== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40018== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40018== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40018== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40018== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40018== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40018== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40018== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40018== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40018== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) +==40018== +==40018== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40018== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==40018== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40018== by 0x104BC822: ??? +==40018== by 0x104BC96F: ??? +==40018== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40018== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40018== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40018== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40018== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40018== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40018== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40018== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40018== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40018== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40018== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40018== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40018== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40018== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40018== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) +==40018== +==40018== Open file descriptor 116: +==40018== +==40018== +==40018== Open file descriptor 113: +==40018== +==40018== +==40018== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt +==40018== +==40018== +==40018== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40018== +==40018== +==40018== +==40018== HEAP SUMMARY: +==40018== in use at exit: 618,311 bytes in 8,236 blocks +==40018== total heap usage: 2,563,997 allocs, 2,555,761 frees, 1,463,690,173 bytes allocated +==40018== +==40018== LEAK SUMMARY: +==40018== definitely lost: 0 bytes in 0 blocks +==40018== indirectly lost: 0 bytes in 0 blocks +==40018== possibly lost: 0 bytes in 0 blocks +==40018== still reachable: 72 bytes in 4 blocks +==40018== suppressed: 618,239 bytes in 8,232 blocks +==40018== Reachable blocks (those to which a pointer was found) are not shown. +==40018== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40018== +==40018== For lists of detected and suppressed errors, rerun with: -s +==40018== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..dad7e56be --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40019== Memcheck, a memory error detector +==40019== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40019== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40019== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningImmersedBoundarySimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40019== Parent PID: 23966 +==40019== +==40019== +==40019== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40019== Open file descriptor 12: +==40019== at 0x10CB807D: pipe (pipe.c:29) +==40019== by 0x196BC07D: ??? +==40019== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40019== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40019== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40019== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40019== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40019== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40019== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40019== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40019== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40019== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40019== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40019== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) +==40019== +==40019== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40019== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==40019== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40019== by 0x104BC822: ??? +==40019== by 0x104BC96F: ??? +==40019== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40019== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40019== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40019== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40019== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40019== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40019== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40019== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40019== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40019== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40019== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40019== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40019== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40019== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40019== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) +==40019== +==40019== Open file descriptor 116: +==40019== +==40019== +==40019== Open file descriptor 113: +==40019== +==40019== +==40019== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt +==40019== +==40019== +==40019== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40019== +==40019== +==40019== +==40019== HEAP SUMMARY: +==40019== in use at exit: 618,295 bytes in 8,235 blocks +==40019== total heap usage: 654,977 allocs, 646,742 frees, 1,512,860,834 bytes allocated +==40019== +==40019== LEAK SUMMARY: +==40019== definitely lost: 0 bytes in 0 blocks +==40019== indirectly lost: 0 bytes in 0 blocks +==40019== possibly lost: 0 bytes in 0 blocks +==40019== still reachable: 56 bytes in 3 blocks +==40019== suppressed: 618,239 bytes in 8,232 blocks +==40019== Reachable blocks (those to which a pointer was found) are not shown. +==40019== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40019== +==40019== For lists of detected and suppressed errors, rerun with: -s +==40019== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..b4b08e8f5 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40911== Memcheck, a memory error detector +==40911== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40911== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40911== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40911== Parent PID: 23966 +==40911== +==40911== +==40911== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40911== Open file descriptor 12: +==40911== at 0x1257807D: pipe (pipe.c:29) +==40911== by 0x1B37E07D: ??? +==40911== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40911== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40911== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40911== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40911== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40911== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40911== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40911== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40911== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40911== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40911== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40911== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) +==40911== +==40911== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40911== at 0x1257CA1C: __open_nocancel (open64_nocancel.c:39) +==40911== by 0x12500BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40911== by 0x11D7C822: ??? +==40911== by 0x11D7C96F: ??? +==40911== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40911== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40911== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40911== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40911== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40911== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40911== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40911== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40911== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40911== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40911== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40911== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40911== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40911== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40911== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) +==40911== +==40911== Open file descriptor 116: +==40911== +==40911== +==40911== Open file descriptor 113: +==40911== +==40911== +==40911== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt +==40911== +==40911== +==40911== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40911== +==40911== +==40911== +==40911== HEAP SUMMARY: +==40911== in use at exit: 618,382 bytes in 8,239 blocks +==40911== total heap usage: 1,754,085 allocs, 1,745,846 frees, 1,514,903,923 bytes allocated +==40911== +==40911== LEAK SUMMARY: +==40911== definitely lost: 0 bytes in 0 blocks +==40911== indirectly lost: 0 bytes in 0 blocks +==40911== possibly lost: 0 bytes in 0 blocks +==40911== still reachable: 56 bytes in 3 blocks +==40911== suppressed: 618,326 bytes in 8,236 blocks +==40911== Reachable blocks (those to which a pointer was found) are not shown. +==40911== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40911== +==40911== For lists of detected and suppressed errors, rerun with: -s +==40911== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestRunningMeshBasedSimulationsTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRunningMeshBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..a86f815bc --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRunningMeshBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40072== Memcheck, a memory error detector +==40072== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40072== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40072== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40072== Parent PID: 23966 +==40072== +==40072== +==40072== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40072== Open file descriptor 12: +==40072== at 0x10CB807D: pipe (pipe.c:29) +==40072== by 0x196BC07D: ??? +==40072== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40072== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40072== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40072== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40072== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40072== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40072== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40072== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40072== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40072== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40072== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40072== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) +==40072== +==40072== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40072== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==40072== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40072== by 0x104BC822: ??? +==40072== by 0x104BC96F: ??? +==40072== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40072== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40072== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40072== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40072== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40072== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40072== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40072== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40072== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40072== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40072== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40072== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40072== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40072== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40072== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) +==40072== +==40072== Open file descriptor 116: +==40072== +==40072== +==40072== Open file descriptor 113: +==40072== +==40072== +==40072== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt +==40072== +==40072== +==40072== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40072== +==40072== +==40072== +==40072== HEAP SUMMARY: +==40072== in use at exit: 618,295 bytes in 8,235 blocks +==40072== total heap usage: 3,498,766 allocs, 3,490,531 frees, 2,269,712,567 bytes allocated +==40072== +==40072== LEAK SUMMARY: +==40072== definitely lost: 0 bytes in 0 blocks +==40072== indirectly lost: 0 bytes in 0 blocks +==40072== possibly lost: 0 bytes in 0 blocks +==40072== still reachable: 56 bytes in 3 blocks +==40072== suppressed: 618,239 bytes in 8,232 blocks +==40072== Reachable blocks (those to which a pointer was found) are not shown. +==40072== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40072== +==40072== For lists of detected and suppressed errors, rerun with: -s +==40072== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestRunningNodeBasedSimulationsTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRunningNodeBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..0f9c51a6a --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRunningNodeBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40107== Memcheck, a memory error detector +==40107== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40107== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40107== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40107== Parent PID: 23966 +==40107== +==40107== +==40107== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40107== Open file descriptor 12: +==40107== at 0xF8E807D: pipe (pipe.c:29) +==40107== by 0x196BC07D: ??? +==40107== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40107== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40107== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40107== by 0x10218D38: PetscInitialize (pinit.c:924) +==40107== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40107== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40107== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40107== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40107== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40107== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40107== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40107== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) +==40107== +==40107== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40107== at 0xF8ECA1C: __open_nocancel (open64_nocancel.c:39) +==40107== by 0xF870BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40107== by 0xF13E822: ??? +==40107== by 0xF13E96F: ??? +==40107== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40107== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40107== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40107== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40107== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40107== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40107== by 0x10218D38: PetscInitialize (pinit.c:924) +==40107== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40107== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40107== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40107== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40107== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40107== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40107== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40107== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) +==40107== +==40107== Open file descriptor 116: +==40107== +==40107== +==40107== Open file descriptor 113: +==40107== +==40107== +==40107== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt +==40107== +==40107== +==40107== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40107== +==40107== +==40107== +==40107== HEAP SUMMARY: +==40107== in use at exit: 618,366 bytes in 8,239 blocks +==40107== total heap usage: 721,857 allocs, 713,618 frees, 1,725,215,324 bytes allocated +==40107== +==40107== LEAK SUMMARY: +==40107== definitely lost: 0 bytes in 0 blocks +==40107== indirectly lost: 0 bytes in 0 blocks +==40107== possibly lost: 0 bytes in 0 blocks +==40107== still reachable: 56 bytes in 3 blocks +==40107== suppressed: 618,310 bytes in 8,236 blocks +==40107== Reachable blocks (those to which a pointer was found) are not shown. +==40107== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40107== +==40107== For lists of detected and suppressed errors, rerun with: -s +==40107== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestRunningPottsBasedSimulationsTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRunningPottsBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..ea966eebc --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRunningPottsBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40112== Memcheck, a memory error detector +==40112== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40112== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40112== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40112== Parent PID: 23966 +==40112== +==40112== +==40112== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40112== Open file descriptor 12: +==40112== at 0xDB9E07D: pipe (pipe.c:29) +==40112== by 0x196BC07D: ??? +==40112== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40112== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40112== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40112== by 0x1012FD38: PetscInitialize (pinit.c:924) +==40112== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40112== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40112== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40112== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40112== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40112== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40112== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40112== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) +==40112== +==40112== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40112== at 0xDBA2A1C: __open_nocancel (open64_nocancel.c:39) +==40112== by 0xDB26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40112== by 0xD4D9822: ??? +==40112== by 0xD4D996F: ??? +==40112== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40112== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40112== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40112== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40112== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40112== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40112== by 0x1012FD38: PetscInitialize (pinit.c:924) +==40112== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40112== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40112== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40112== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40112== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40112== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40112== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40112== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) +==40112== +==40112== Open file descriptor 116: +==40112== +==40112== +==40112== Open file descriptor 113: +==40112== +==40112== +==40112== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt +==40112== +==40112== +==40112== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40112== +==40112== +==40112== +==40112== HEAP SUMMARY: +==40112== in use at exit: 618,295 bytes in 8,235 blocks +==40112== total heap usage: 40,687,077 allocs, 40,678,842 frees, 3,830,316,308 bytes allocated +==40112== +==40112== LEAK SUMMARY: +==40112== definitely lost: 0 bytes in 0 blocks +==40112== indirectly lost: 0 bytes in 0 blocks +==40112== possibly lost: 0 bytes in 0 blocks +==40112== still reachable: 56 bytes in 3 blocks +==40112== suppressed: 618,239 bytes in 8,232 blocks +==40112== Reachable blocks (those to which a pointer was found) are not shown. +==40112== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40112== +==40112== For lists of detected and suppressed errors, rerun with: -s +==40112== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..23f9f18b6 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40118== Memcheck, a memory error detector +==40118== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40118== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40118== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40118== Parent PID: 23966 +==40118== +==40118== +==40118== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40118== Open file descriptor 12: +==40118== at 0xFB9E07D: pipe (pipe.c:29) +==40118== by 0x196BC07D: ??? +==40118== by 0x14CBA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40118== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40118== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40118== by 0x1012FD38: PetscInitialize (pinit.c:924) +==40118== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40118== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40118== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40118== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40118== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40118== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40118== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40118== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) +==40118== +==40118== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40118== at 0xFBA2A1C: __open_nocancel (open64_nocancel.c:39) +==40118== by 0xFB26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40118== by 0xF4DB822: ??? +==40118== by 0xF4DB96F: ??? +==40118== by 0x14D5F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40118== by 0x14D5F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40118== by 0x14D15922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40118== by 0x14CBA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40118== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40118== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40118== by 0x1012FD38: PetscInitialize (pinit.c:924) +==40118== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40118== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40118== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40118== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40118== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40118== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40118== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40118== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) +==40118== +==40118== Open file descriptor 116: +==40118== +==40118== +==40118== Open file descriptor 113: +==40118== +==40118== +==40118== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt +==40118== +==40118== +==40118== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40118== +==40118== +==40118== +==40118== HEAP SUMMARY: +==40118== in use at exit: 618,295 bytes in 8,235 blocks +==40118== total heap usage: 2,084,194 allocs, 2,075,959 frees, 1,674,709,712 bytes allocated +==40118== +==40118== LEAK SUMMARY: +==40118== definitely lost: 0 bytes in 0 blocks +==40118== indirectly lost: 0 bytes in 0 blocks +==40118== possibly lost: 0 bytes in 0 blocks +==40118== still reachable: 56 bytes in 3 blocks +==40118== suppressed: 618,239 bytes in 8,232 blocks +==40118== Reachable blocks (those to which a pointer was found) are not shown. +==40118== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40118== +==40118== For lists of detected and suppressed errors, rerun with: -s +==40118== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..691b922e5 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40919== Memcheck, a memory error detector +==40919== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40919== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40919== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40919== Parent PID: 23966 +==40919== +==40919== +==40919== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40919== Open file descriptor 12: +==40919== at 0x1257807D: pipe (pipe.c:29) +==40919== by 0x1B37E07D: ??? +==40919== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40919== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40919== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40919== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40919== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40919== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40919== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40919== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40919== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40919== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40919== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40919== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) +==40919== +==40919== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40919== at 0x1257CA1C: __open_nocancel (open64_nocancel.c:39) +==40919== by 0x12500BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40919== by 0x11D7C822: ??? +==40919== by 0x11D7C96F: ??? +==40919== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40919== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40919== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40919== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40919== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40919== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40919== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40919== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40919== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40919== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40919== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40919== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40919== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40919== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40919== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) +==40919== +==40919== Open file descriptor 116: +==40919== +==40919== +==40919== Open file descriptor 113: +==40919== +==40919== +==40919== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt +==40919== +==40919== +==40919== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40919== +==40919== +==40919== +==40919== HEAP SUMMARY: +==40919== in use at exit: 618,462 bytes in 8,240 blocks +==40919== total heap usage: 1,617,683 allocs, 1,609,443 frees, 1,458,368,571 bytes allocated +==40919== +==40919== LEAK SUMMARY: +==40919== definitely lost: 0 bytes in 0 blocks +==40919== indirectly lost: 0 bytes in 0 blocks +==40919== possibly lost: 0 bytes in 0 blocks +==40919== still reachable: 136 bytes in 4 blocks +==40919== suppressed: 618,326 bytes in 8,236 blocks +==40919== Reachable blocks (those to which a pointer was found) are not shown. +==40919== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40919== +==40919== For lists of detected and suppressed errors, rerun with: -s +==40919== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestRunningVertexBasedSimulationsTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRunningVertexBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..153f43df6 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRunningVertexBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40164== Memcheck, a memory error detector +==40164== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40164== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40164== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40164== Parent PID: 23966 +==40164== +==40164== +==40164== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40164== Open file descriptor 12: +==40164== at 0x10D9F07D: pipe (pipe.c:29) +==40164== by 0x196BC07D: ??? +==40164== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40164== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40164== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40164== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40164== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40164== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40164== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40164== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40164== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40164== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40164== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40164== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) +==40164== +==40164== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40164== at 0x10DA3A1C: __open_nocancel (open64_nocancel.c:39) +==40164== by 0x10D27BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40164== by 0x104BC822: ??? +==40164== by 0x104BC96F: ??? +==40164== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40164== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40164== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40164== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40164== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40164== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40164== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40164== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40164== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40164== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40164== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40164== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40164== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40164== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40164== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) +==40164== +==40164== Open file descriptor 116: +==40164== +==40164== +==40164== Open file descriptor 113: +==40164== +==40164== +==40164== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt +==40164== +==40164== +==40164== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40164== +==40164== +==40164== +==40164== HEAP SUMMARY: +==40164== in use at exit: 618,366 bytes in 8,239 blocks +==40164== total heap usage: 1,398,843 allocs, 1,390,604 frees, 1,398,428,359 bytes allocated +==40164== +==40164== LEAK SUMMARY: +==40164== definitely lost: 0 bytes in 0 blocks +==40164== indirectly lost: 0 bytes in 0 blocks +==40164== possibly lost: 0 bytes in 0 blocks +==40164== still reachable: 56 bytes in 3 blocks +==40164== suppressed: 618,310 bytes in 8,236 blocks +==40164== Reachable blocks (those to which a pointer was found) are not shown. +==40164== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40164== +==40164== For lists of detected and suppressed errors, rerun with: -s +==40164== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestRushLarsen_valgrind.txt b/log-files/2024-10-14_17-51-53/TestRushLarsen_valgrind.txt new file mode 100644 index 000000000..b8868e98e --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestRushLarsen_valgrind.txt @@ -0,0 +1,73 @@ +==42634== Memcheck, a memory error detector +==42634== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42634== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42634== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestRushLarsen -malloc_debug -malloc_dump -memory_info +==42634== Parent PID: 23966 +==42634== +==42634== +==42634== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42634== Open file descriptor 12: +==42634== at 0x9C6807D: pipe (pipe.c:29) +==42634== by 0x1433707D: ??? +==42634== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42634== by 0x989B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42634== by 0x9834D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42634== by 0x8508D38: PetscInitialize (pinit.c:924) +==42634== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42634== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42634== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42634== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42634== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42634== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42634== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42634== by 0x114C35: main (TestRushLarsen.cpp:18) +==42634== +==42634== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42634== at 0x9C6CA1C: __open_nocancel (open64_nocancel.c:39) +==42634== by 0x9BF0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42634== by 0x9797822: ??? +==42634== by 0x979796F: ??? +==42634== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42634== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42634== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42634== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42634== by 0x989B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42634== by 0x9834D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42634== by 0x8508D38: PetscInitialize (pinit.c:924) +==42634== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42634== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42634== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42634== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42634== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42634== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42634== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42634== by 0x114C35: main (TestRushLarsen.cpp:18) +==42634== +==42634== Open file descriptor 116: +==42634== +==42634== +==42634== Open file descriptor 113: +==42634== +==42634== +==42634== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRushLarsen_valgrind.txt +==42634== +==42634== +==42634== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42634== +==42634== +==42634== +==42634== HEAP SUMMARY: +==42634== in use at exit: 621,830 bytes in 8,242 blocks +==42634== total heap usage: 1,051,895 allocs, 1,043,653 frees, 1,778,851,059 bytes allocated +==42634== +==42634== LEAK SUMMARY: +==42634== definitely lost: 0 bytes in 0 blocks +==42634== indirectly lost: 0 bytes in 0 blocks +==42634== possibly lost: 0 bytes in 0 blocks +==42634== still reachable: 3,575 bytes in 10 blocks +==42634== suppressed: 618,255 bytes in 8,232 blocks +==42634== Reachable blocks (those to which a pointer was found) are not shown. +==42634== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42634== +==42634== For lists of detected and suppressed errors, rerun with: -s +==42634== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-10-14_17-51-53/TestShovingCaBasedDivisionRules_valgrind.txt b/log-files/2024-10-14_17-51-53/TestShovingCaBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..734f31241 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestShovingCaBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==40442== Memcheck, a memory error detector +==40442== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40442== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40442== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestShovingCaBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==40442== Parent PID: 23966 +==40442== +==40442== +==40442== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40442== Open file descriptor 12: +==40442== at 0x1095707D: pipe (pipe.c:29) +==40442== by 0x1B37E07D: ??? +==40442== by 0x154C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40442== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40442== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40442== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40442== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40442== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40442== by 0x12E1A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40442== by 0x128F3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40442== by 0x12B950: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40442== by 0x12B7F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40442== by 0x12BE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40442== by 0x127365: main (TestShovingCaBasedDivisionRules.cpp:19) +==40442== +==40442== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40442== at 0x1095BA1C: __open_nocancel (open64_nocancel.c:39) +==40442== by 0x108DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40442== by 0xED9B822: ??? +==40442== by 0xED9B96F: ??? +==40442== by 0x1556D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40442== by 0x1556D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40442== by 0x15523922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40442== by 0x154C82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40442== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40442== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40442== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40442== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40442== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40442== by 0x12E1A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40442== by 0x128F3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40442== by 0x12B950: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40442== by 0x12B7F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40442== by 0x12BE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40442== by 0x127365: main (TestShovingCaBasedDivisionRules.cpp:19) +==40442== +==40442== Open file descriptor 116: +==40442== +==40442== +==40442== Open file descriptor 113: +==40442== +==40442== +==40442== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestShovingCaBasedDivisionRules_valgrind.txt +==40442== +==40442== +==40442== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40442== +==40442== +==40442== +==40442== HEAP SUMMARY: +==40442== in use at exit: 618,398 bytes in 8,240 blocks +==40442== total heap usage: 57,802 allocs, 49,562 frees, 1,339,210,414 bytes allocated +==40442== +==40442== LEAK SUMMARY: +==40442== definitely lost: 0 bytes in 0 blocks +==40442== indirectly lost: 0 bytes in 0 blocks +==40442== possibly lost: 0 bytes in 0 blocks +==40442== still reachable: 72 bytes in 4 blocks +==40442== suppressed: 618,326 bytes in 8,236 blocks +==40442== Reachable blocks (those to which a pointer was found) are not shown. +==40442== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40442== +==40442== For lists of detected and suppressed errors, rerun with: -s +==40442== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestSimpleCellCycleModelsForCrypt_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSimpleCellCycleModelsForCrypt_valgrind.txt new file mode 100644 index 000000000..36a3310e2 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSimpleCellCycleModelsForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40232== Memcheck, a memory error detector +==40232== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40232== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40232== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info +==40232== Parent PID: 23966 +==40232== +==40232== +==40232== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40232== Open file descriptor 12: +==40232== at 0x1095707D: pipe (pipe.c:29) +==40232== by 0x1B37E07D: ??? +==40232== by 0x154C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40232== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40232== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40232== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40232== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40232== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40232== by 0x186CD7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40232== by 0x17F2CB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40232== by 0x18258E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40232== by 0x18242E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40232== by 0x182AC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40232== by 0x17BBF5: main (TestSimpleCellCycleModelsForCrypt.cpp:19) +==40232== +==40232== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40232== at 0x1095BA1C: __open_nocancel (open64_nocancel.c:39) +==40232== by 0x108DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40232== by 0xED9B822: ??? +==40232== by 0xED9B96F: ??? +==40232== by 0x1556D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40232== by 0x1556D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40232== by 0x15523922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40232== by 0x154C82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40232== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40232== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40232== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40232== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40232== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40232== by 0x186CD7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40232== by 0x17F2CB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40232== by 0x18258E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40232== by 0x18242E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40232== by 0x182AC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40232== by 0x17BBF5: main (TestSimpleCellCycleModelsForCrypt.cpp:19) +==40232== +==40232== Open file descriptor 116: +==40232== +==40232== +==40232== Open file descriptor 113: +==40232== +==40232== +==40232== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt +==40232== +==40232== +==40232== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40232== +==40232== +==40232== +==40232== HEAP SUMMARY: +==40232== in use at exit: 618,446 bytes in 8,240 blocks +==40232== total heap usage: 753,783 allocs, 745,543 frees, 1,372,608,383 bytes allocated +==40232== +==40232== LEAK SUMMARY: +==40232== definitely lost: 0 bytes in 0 blocks +==40232== indirectly lost: 0 bytes in 0 blocks +==40232== possibly lost: 0 bytes in 0 blocks +==40232== still reachable: 120 bytes in 4 blocks +==40232== suppressed: 618,326 bytes in 8,236 blocks +==40232== Reachable blocks (those to which a pointer was found) are not shown. +==40232== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40232== +==40232== For lists of detected and suppressed errors, rerun with: -s +==40232== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestSimpleCellCycleModels_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSimpleCellCycleModels_valgrind.txt new file mode 100644 index 000000000..ddf0072de --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSimpleCellCycleModels_valgrind.txt @@ -0,0 +1,73 @@ +==25426== Memcheck, a memory error detector +==25426== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25426== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25426== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimpleCellCycleModels -malloc_debug -malloc_dump -memory_info +==25426== Parent PID: 23966 +==25426== +==25426== +==25426== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25426== Open file descriptor 12: +==25426== at 0xED5007D: pipe (pipe.c:29) +==25426== by 0x196BD07D: ??? +==25426== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25426== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25426== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25426== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25426== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25426== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25426== by 0x137FA7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25426== by 0x13098F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25426== by 0x133A5C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25426== by 0x1338FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25426== by 0x133F93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25426== by 0x12D2C5: main (TestSimpleCellCycleModels.cpp:19) +==25426== +==25426== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25426== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25426== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25426== by 0xD4D9822: ??? +==25426== by 0xD4D996F: ??? +==25426== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25426== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25426== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25426== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25426== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25426== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25426== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25426== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25426== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25426== by 0x137FA7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25426== by 0x13098F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25426== by 0x133A5C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25426== by 0x1338FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25426== by 0x133F93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25426== by 0x12D2C5: main (TestSimpleCellCycleModels.cpp:19) +==25426== +==25426== Open file descriptor 116: +==25426== +==25426== +==25426== Open file descriptor 113: +==25426== +==25426== +==25426== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModels_valgrind.txt +==25426== +==25426== +==25426== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25426== +==25426== +==25426== +==25426== HEAP SUMMARY: +==25426== in use at exit: 618,398 bytes in 8,240 blocks +==25426== total heap usage: 78,951 allocs, 70,711 frees, 1,342,261,071 bytes allocated +==25426== +==25426== LEAK SUMMARY: +==25426== definitely lost: 0 bytes in 0 blocks +==25426== indirectly lost: 0 bytes in 0 blocks +==25426== possibly lost: 0 bytes in 0 blocks +==25426== still reachable: 88 bytes in 4 blocks +==25426== suppressed: 618,310 bytes in 8,236 blocks +==25426== Reachable blocks (those to which a pointer was found) are not shown. +==25426== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25426== +==25426== For lists of detected and suppressed errors, rerun with: -s +==25426== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestSimpleDataWriter_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSimpleDataWriter_valgrind.txt new file mode 100644 index 000000000..38aa5e938 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSimpleDataWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24259== Memcheck, a memory error detector +==24259== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24259== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24259== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestSimpleDataWriter -malloc_debug -malloc_dump -memory_info +==24259== Parent PID: 23966 +==24259== +==24259== +==24259== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24259== Open file descriptor 12: +==24259== at 0x61DC07D: pipe (pipe.c:29) +==24259== by 0xAF2007D: ??? +==24259== by 0x8A2F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24259== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24259== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24259== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24259== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24259== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24259== by 0x11CE43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24259== by 0x11682D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24259== by 0x119106: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24259== by 0x118FA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24259== by 0x11963D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24259== by 0x114C55: main (TestSimpleDataWriter.cpp:19) +==24259== +==24259== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24259== at 0x61E0A1C: __open_nocancel (open64_nocancel.c:39) +==24259== by 0x6164BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24259== by 0x5D25822: ??? +==24259== by 0x5D2596F: ??? +==24259== by 0x8AD66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24259== by 0x8AD6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24259== by 0x8A8C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24259== by 0x8A2F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24259== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24259== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24259== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24259== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24259== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24259== by 0x11CE43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24259== by 0x11682D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24259== by 0x119106: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24259== by 0x118FA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24259== by 0x11963D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24259== by 0x114C55: main (TestSimpleDataWriter.cpp:19) +==24259== +==24259== Open file descriptor 116: +==24259== +==24259== +==24259== Open file descriptor 113: +==24259== +==24259== +==24259== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleDataWriter_valgrind.txt +==24259== +==24259== +==24259== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24259== +==24259== +==24259== +==24259== HEAP SUMMARY: +==24259== in use at exit: 617,886 bytes in 8,238 blocks +==24259== total heap usage: 45,177 allocs, 36,939 frees, 1,338,360,034 bytes allocated +==24259== +==24259== LEAK SUMMARY: +==24259== definitely lost: 0 bytes in 0 blocks +==24259== indirectly lost: 0 bytes in 0 blocks +==24259== possibly lost: 0 bytes in 0 blocks +==24259== still reachable: 24 bytes in 2 blocks +==24259== suppressed: 617,862 bytes in 8,236 blocks +==24259== Reachable blocks (those to which a pointer was found) are not shown. +==24259== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24259== +==24259== For lists of detected and suppressed errors, rerun with: -s +==24259== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestSimpleImpedanceProblem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSimpleImpedanceProblem_valgrind.txt new file mode 100644 index 000000000..e54ee19e4 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSimpleImpedanceProblem_valgrind.txt @@ -0,0 +1,73 @@ +==40977== Memcheck, a memory error detector +==40977== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40977== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40977== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestSimpleImpedanceProblem -malloc_debug -malloc_dump -memory_info +==40977== Parent PID: 23966 +==40977== +==40977== +==40977== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40977== Open file descriptor 12: +==40977== at 0x6D7A07D: pipe (pipe.c:29) +==40977== by 0x107B407D: ??? +==40977== by 0xC0204CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40977== by 0x82F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40977== by 0x828ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40977== by 0x6F85D38: PetscInitialize (pinit.c:924) +==40977== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40977== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40977== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40977== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40977== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40977== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40977== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40977== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) +==40977== +==40977== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40977== at 0x6D7EA1C: __open_nocancel (open64_nocancel.c:39) +==40977== by 0x6D02BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40977== by 0x66B7822: ??? +==40977== by 0x66B796F: ??? +==40977== by 0xC0C56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40977== by 0xC0C5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40977== by 0xC07B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40977== by 0xC0202DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40977== by 0x82F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40977== by 0x828ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40977== by 0x6F85D38: PetscInitialize (pinit.c:924) +==40977== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40977== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40977== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40977== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40977== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40977== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40977== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40977== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) +==40977== +==40977== Open file descriptor 116: +==40977== +==40977== +==40977== Open file descriptor 113: +==40977== +==40977== +==40977== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleImpedanceProblem_valgrind.txt +==40977== +==40977== +==40977== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40977== +==40977== +==40977== +==40977== HEAP SUMMARY: +==40977== in use at exit: 618,263 bytes in 8,234 blocks +==40977== total heap usage: 7,105,342 allocs, 7,097,108 frees, 1,601,380,936 bytes allocated +==40977== +==40977== LEAK SUMMARY: +==40977== definitely lost: 0 bytes in 0 blocks +==40977== indirectly lost: 0 bytes in 0 blocks +==40977== possibly lost: 0 bytes in 0 blocks +==40977== still reachable: 24 bytes in 2 blocks +==40977== suppressed: 618,239 bytes in 8,232 blocks +==40977== Reachable blocks (those to which a pointer was found) are not shown. +==40977== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40977== +==40977== For lists of detected and suppressed errors, rerun with: -s +==40977== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-10-14_17-51-53/TestSimpleLinearEllipticSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSimpleLinearEllipticSolver_valgrind.txt new file mode 100644 index 000000000..01815cb08 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSimpleLinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25054== Memcheck, a memory error detector +==25054== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25054== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25054== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleLinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==25054== Parent PID: 23966 +==25054== +==25054== +==25054== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25054== Open file descriptor 12: +==25054== at 0x84EF07D: pipe (pipe.c:29) +==25054== by 0x104E607D: ??? +==25054== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25054== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25054== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25054== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25054== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25054== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25054== by 0x19C0B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25054== by 0x1968F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25054== by 0x1998A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25054== by 0x19979F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25054== by 0x199DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25054== by 0x1950F5: main (TestSimpleLinearEllipticSolver.cpp:18) +==25054== +==25054== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25054== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25054== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25054== by 0x7D43822: ??? +==25054== by 0x7D4396F: ??? +==25054== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25054== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25054== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25054== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25054== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25054== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25054== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25054== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25054== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25054== by 0x19C0B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25054== by 0x1968F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25054== by 0x1998A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25054== by 0x19979F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25054== by 0x199DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25054== by 0x1950F5: main (TestSimpleLinearEllipticSolver.cpp:18) +==25054== +==25054== Open file descriptor 116: +==25054== +==25054== +==25054== Open file descriptor 113: +==25054== +==25054== +==25054== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleLinearEllipticSolver_valgrind.txt +==25054== +==25054== +==25054== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25054== +==25054== +==25054== +==25054== HEAP SUMMARY: +==25054== in use at exit: 618,270 bytes in 8,238 blocks +==25054== total heap usage: 210,199 allocs, 201,961 frees, 1,356,095,932 bytes allocated +==25054== +==25054== LEAK SUMMARY: +==25054== definitely lost: 0 bytes in 0 blocks +==25054== indirectly lost: 0 bytes in 0 blocks +==25054== possibly lost: 0 bytes in 0 blocks +==25054== still reachable: 24 bytes in 2 blocks +==25054== suppressed: 618,246 bytes in 8,236 blocks +==25054== Reachable blocks (those to which a pointer was found) are not shown. +==25054== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25054== +==25054== For lists of detected and suppressed errors, rerun with: -s +==25054== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestSimpleLinearParabolicSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSimpleLinearParabolicSolver_valgrind.txt new file mode 100644 index 000000000..b41288e84 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSimpleLinearParabolicSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25047== Memcheck, a memory error detector +==25047== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25047== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25047== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleLinearParabolicSolver -malloc_debug -malloc_dump -memory_info +==25047== Parent PID: 23966 +==25047== +==25047== +==25047== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25047== Open file descriptor 12: +==25047== at 0x856207D: pipe (pipe.c:29) +==25047== by 0x104E607D: ??? +==25047== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25047== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25047== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25047== by 0x6B27D38: PetscInitialize (pinit.c:924) +==25047== by 0x69FE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25047== by 0x69FE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25047== by 0x1553A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25047== by 0x14FA6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25047== by 0x152E08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25047== by 0x152CA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25047== by 0x15333F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25047== by 0x14DE95: main (TestSimpleLinearParabolicSolver.cpp:19) +==25047== +==25047== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25047== at 0x8566A1C: __open_nocancel (open64_nocancel.c:39) +==25047== by 0x84EABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25047== by 0x7DB6822: ??? +==25047== by 0x7DB696F: ??? +==25047== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25047== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25047== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25047== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25047== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25047== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25047== by 0x6B27D38: PetscInitialize (pinit.c:924) +==25047== by 0x69FE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25047== by 0x69FE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25047== by 0x1553A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25047== by 0x14FA6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25047== by 0x152E08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25047== by 0x152CA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25047== by 0x15333F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25047== by 0x14DE95: main (TestSimpleLinearParabolicSolver.cpp:19) +==25047== +==25047== Open file descriptor 116: +==25047== +==25047== +==25047== Open file descriptor 113: +==25047== +==25047== +==25047== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleLinearParabolicSolver_valgrind.txt +==25047== +==25047== +==25047== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25047== +==25047== +==25047== +==25047== HEAP SUMMARY: +==25047== in use at exit: 618,750 bytes in 8,248 blocks +==25047== total heap usage: 370,032 allocs, 361,784 frees, 1,429,166,906 bytes allocated +==25047== +==25047== LEAK SUMMARY: +==25047== definitely lost: 0 bytes in 0 blocks +==25047== indirectly lost: 0 bytes in 0 blocks +==25047== possibly lost: 0 bytes in 0 blocks +==25047== still reachable: 24 bytes in 2 blocks +==25047== suppressed: 618,726 bytes in 8,246 blocks +==25047== Reachable blocks (those to which a pointer was found) are not shown. +==25047== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25047== +==25047== For lists of detected and suppressed errors, rerun with: -s +==25047== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2024-10-14_17-51-53/TestSimpleNonlinearEllipticSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSimpleNonlinearEllipticSolver_valgrind.txt new file mode 100644 index 000000000..175baa73e --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSimpleNonlinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25062== Memcheck, a memory error detector +==25062== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25062== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25062== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleNonlinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==25062== Parent PID: 23966 +==25062== +==25062== +==25062== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25062== Open file descriptor 12: +==25062== at 0x84EF07D: pipe (pipe.c:29) +==25062== by 0x104E607D: ??? +==25062== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25062== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25062== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25062== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25062== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25062== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25062== by 0x14D424: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25062== by 0x14766F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25062== by 0x14A908: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25062== by 0x14A7A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25062== by 0x14AE3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25062== by 0x1458D5: main (TestSimpleNonlinearEllipticSolver.cpp:19) +==25062== +==25062== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25062== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25062== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25062== by 0x7D43822: ??? +==25062== by 0x7D4396F: ??? +==25062== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25062== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25062== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25062== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25062== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25062== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25062== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25062== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25062== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25062== by 0x14D424: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25062== by 0x14766F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25062== by 0x14A908: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25062== by 0x14A7A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25062== by 0x14AE3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25062== by 0x1458D5: main (TestSimpleNonlinearEllipticSolver.cpp:19) +==25062== +==25062== Open file descriptor 116: +==25062== +==25062== +==25062== Open file descriptor 113: +==25062== +==25062== +==25062== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleNonlinearEllipticSolver_valgrind.txt +==25062== +==25062== +==25062== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25062== +==25062== +==25062== +==25062== HEAP SUMMARY: +==25062== in use at exit: 618,199 bytes in 8,234 blocks +==25062== total heap usage: 390,359 allocs, 382,125 frees, 1,347,161,331 bytes allocated +==25062== +==25062== LEAK SUMMARY: +==25062== definitely lost: 0 bytes in 0 blocks +==25062== indirectly lost: 0 bytes in 0 blocks +==25062== possibly lost: 0 bytes in 0 blocks +==25062== still reachable: 24 bytes in 2 blocks +==25062== suppressed: 618,175 bytes in 8,232 blocks +==25062== Reachable blocks (those to which a pointer was found) are not shown. +==25062== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25062== +==25062== For lists of detected and suppressed errors, rerun with: -s +==25062== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2024-10-14_17-51-53/TestSimpleTargetAreaModifier_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSimpleTargetAreaModifier_valgrind.txt new file mode 100644 index 000000000..202942c0d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSimpleTargetAreaModifier_valgrind.txt @@ -0,0 +1,73 @@ +==34482== Memcheck, a memory error detector +==34482== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==34482== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==34482== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimpleTargetAreaModifier -malloc_debug -malloc_dump -memory_info +==34482== Parent PID: 23966 +==34482== +==34482== +==34482== FILE DESCRIPTORS: 9 open (3 std) at exit. +==34482== Open file descriptor 12: +==34482== at 0x10CFA07D: pipe (pipe.c:29) +==34482== by 0x196BC07D: ??? +==34482== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==34482== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==34482== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==34482== by 0xF292D38: PetscInitialize (pinit.c:924) +==34482== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==34482== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==34482== by 0x139D63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==34482== by 0x1324DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==34482== by 0x1357DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==34482== by 0x13567C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==34482== by 0x135D13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==34482== by 0x130905: main (TestSimpleTargetAreaModifier.cpp:19) +==34482== +==34482== Open file descriptor 8: /dev/shm/open_mpi.0000 +==34482== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==34482== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==34482== by 0xF13E822: ??? +==34482== by 0xF13E96F: ??? +==34482== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==34482== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==34482== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==34482== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==34482== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==34482== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==34482== by 0xF292D38: PetscInitialize (pinit.c:924) +==34482== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==34482== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==34482== by 0x139D63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==34482== by 0x1324DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==34482== by 0x1357DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==34482== by 0x13567C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==34482== by 0x135D13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==34482== by 0x130905: main (TestSimpleTargetAreaModifier.cpp:19) +==34482== +==34482== Open file descriptor 116: +==34482== +==34482== +==34482== Open file descriptor 113: +==34482== +==34482== +==34482== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleTargetAreaModifier_valgrind.txt +==34482== +==34482== +==34482== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==34482== +==34482== +==34482== +==34482== HEAP SUMMARY: +==34482== in use at exit: 618,366 bytes in 8,239 blocks +==34482== total heap usage: 588,723 allocs, 580,484 frees, 1,437,136,361 bytes allocated +==34482== +==34482== LEAK SUMMARY: +==34482== definitely lost: 0 bytes in 0 blocks +==34482== indirectly lost: 0 bytes in 0 blocks +==34482== possibly lost: 0 bytes in 0 blocks +==34482== still reachable: 56 bytes in 3 blocks +==34482== suppressed: 618,310 bytes in 8,236 blocks +==34482== Reachable blocks (those to which a pointer was found) are not shown. +==34482== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==34482== +==34482== For lists of detected and suppressed errors, rerun with: -s +==34482== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestSimulationTime_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSimulationTime_valgrind.txt new file mode 100644 index 000000000..c1a2d0e08 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSimulationTime_valgrind.txt @@ -0,0 +1,73 @@ +==25707== Memcheck, a memory error detector +==25707== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25707== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25707== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationTime -malloc_debug -malloc_dump -memory_info +==25707== Parent PID: 23966 +==25707== +==25707== +==25707== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25707== Open file descriptor 12: +==25707== at 0xD89B07D: pipe (pipe.c:29) +==25707== by 0x196BD07D: ??? +==25707== by 0x14C774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25707== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25707== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25707== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25707== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25707== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25707== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25707== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25707== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25707== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25707== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25707== by 0x154225: main (TestSimulationTime.cpp:19) +==25707== +==25707== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25707== at 0xD89FA1C: __open_nocancel (open64_nocancel.c:39) +==25707== by 0xD823BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25707== by 0xD4D9822: ??? +==25707== by 0xD4D996F: ??? +==25707== by 0x14D1C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25707== by 0x14D1C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25707== by 0x14CD2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25707== by 0x14C772DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25707== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25707== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25707== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25707== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25707== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25707== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25707== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25707== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25707== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25707== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25707== by 0x154225: main (TestSimulationTime.cpp:19) +==25707== +==25707== Open file descriptor 116: +==25707== +==25707== +==25707== Open file descriptor 113: +==25707== +==25707== +==25707== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationTime_valgrind.txt +==25707== +==25707== +==25707== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25707== +==25707== +==25707== +==25707== HEAP SUMMARY: +==25707== in use at exit: 618,334 bytes in 8,238 blocks +==25707== total heap usage: 53,204 allocs, 44,966 frees, 1,338,921,592 bytes allocated +==25707== +==25707== LEAK SUMMARY: +==25707== definitely lost: 0 bytes in 0 blocks +==25707== indirectly lost: 0 bytes in 0 blocks +==25707== possibly lost: 0 bytes in 0 blocks +==25707== still reachable: 24 bytes in 2 blocks +==25707== suppressed: 618,310 bytes in 8,236 blocks +==25707== Reachable blocks (those to which a pointer was found) are not shown. +==25707== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25707== +==25707== For lists of detected and suppressed errors, rerun with: -s +==25707== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..ee74d4fe1 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25510== Memcheck, a memory error detector +==25510== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25510== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25510== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithEllipticBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25510== Parent PID: 23966 +==25510== +==25510== +==25510== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25510== Open file descriptor 12: +==25510== at 0x1105507D: pipe (pipe.c:29) +==25510== by 0x196BC07D: ??? +==25510== by 0x14C1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25510== by 0x1095D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25510== by 0x108F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25510== by 0xF5CAD38: PetscInitialize (pinit.c:924) +==25510== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25510== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25510== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25510== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25510== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25510== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25510== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25510== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) +==25510== +==25510== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25510== at 0x11059A1C: __open_nocancel (open64_nocancel.c:39) +==25510== by 0x10FDDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25510== by 0x10859822: ??? +==25510== by 0x1085996F: ??? +==25510== by 0x14CBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25510== by 0x14CBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25510== by 0x14C75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25510== by 0x14C1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25510== by 0x1095D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25510== by 0x108F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25510== by 0xF5CAD38: PetscInitialize (pinit.c:924) +==25510== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25510== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25510== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25510== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25510== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25510== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25510== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25510== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) +==25510== +==25510== Open file descriptor 116: +==25510== +==25510== +==25510== Open file descriptor 113: +==25510== +==25510== +==25510== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt +==25510== +==25510== +==25510== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25510== +==25510== +==25510== +==25510== HEAP SUMMARY: +==25510== in use at exit: 618,295 bytes in 8,235 blocks +==25510== total heap usage: 7,860,251 allocs, 7,852,016 frees, 2,184,345,518 bytes allocated +==25510== +==25510== LEAK SUMMARY: +==25510== definitely lost: 0 bytes in 0 blocks +==25510== indirectly lost: 0 bytes in 0 blocks +==25510== possibly lost: 0 bytes in 0 blocks +==25510== still reachable: 56 bytes in 3 blocks +==25510== suppressed: 618,239 bytes in 8,232 blocks +==25510== Reachable blocks (those to which a pointer was found) are not shown. +==25510== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25510== +==25510== For lists of detected and suppressed errors, rerun with: -s +==25510== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..296161634 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25536== Memcheck, a memory error detector +==25536== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25536== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25536== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithEllipticGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25536== Parent PID: 23966 +==25536== +==25536== +==25536== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25536== Open file descriptor 12: +==25536== at 0x1105507D: pipe (pipe.c:29) +==25536== by 0x196BC07D: ??? +==25536== by 0x14C1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25536== by 0x1095D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25536== by 0x108F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25536== by 0xF5CAD38: PetscInitialize (pinit.c:924) +==25536== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25536== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25536== by 0x12F3BB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25536== by 0x12A2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25536== by 0x12CDFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25536== by 0x12CC9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25536== by 0x12D333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25536== by 0x1286D5: main (TestSimulationsWithEllipticGrowingDomainPdeModifier.cpp:19) +==25536== +==25536== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25536== at 0x11059A1C: __open_nocancel (open64_nocancel.c:39) +==25536== by 0x10FDDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25536== by 0x10859822: ??? +==25536== by 0x1085996F: ??? +==25536== by 0x14CBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25536== by 0x14CBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25536== by 0x14C75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25536== by 0x14C1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25536== by 0x1095D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25536== by 0x108F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25536== by 0xF5CAD38: PetscInitialize (pinit.c:924) +==25536== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25536== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25536== by 0x12F3BB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25536== by 0x12A2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25536== by 0x12CDFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25536== by 0x12CC9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25536== by 0x12D333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25536== by 0x1286D5: main (TestSimulationsWithEllipticGrowingDomainPdeModifier.cpp:19) +==25536== +==25536== Open file descriptor 116: +==25536== +==25536== +==25536== Open file descriptor 113: +==25536== +==25536== +==25536== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt +==25536== +==25536== +==25536== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25536== +==25536== +==25536== +==25536== HEAP SUMMARY: +==25536== in use at exit: 618,295 bytes in 8,235 blocks +==25536== total heap usage: 5,213,990 allocs, 5,205,755 frees, 2,319,889,868 bytes allocated +==25536== +==25536== LEAK SUMMARY: +==25536== definitely lost: 0 bytes in 0 blocks +==25536== indirectly lost: 0 bytes in 0 blocks +==25536== possibly lost: 0 bytes in 0 blocks +==25536== still reachable: 56 bytes in 3 blocks +==25536== suppressed: 618,239 bytes in 8,232 blocks +==25536== Reachable blocks (those to which a pointer was found) are not shown. +==25536== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25536== +==25536== For lists of detected and suppressed errors, rerun with: -s +==25536== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..9504d295c --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25664== Memcheck, a memory error detector +==25664== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25664== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25664== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithParabolicBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25664== Parent PID: 23966 +==25664== +==25664== +==25664== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25664== Open file descriptor 12: +==25664== at 0x1105507D: pipe (pipe.c:29) +==25664== by 0x196BC07D: ??? +==25664== by 0x14C1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25664== by 0x1095D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25664== by 0x108F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25664== by 0xF5CAD38: PetscInitialize (pinit.c:924) +==25664== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25664== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25664== by 0x129501: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25664== by 0x1249F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25664== by 0x126F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25664== by 0x126E65: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25664== by 0x127479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25664== by 0x1231F5: main (TestSimulationsWithParabolicBoxDomainPdeModifier.cpp:18) +==25664== +==25664== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25664== at 0x11059A1C: __open_nocancel (open64_nocancel.c:39) +==25664== by 0x10FDDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25664== by 0x10859822: ??? +==25664== by 0x1085996F: ??? +==25664== by 0x14CBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25664== by 0x14CBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25664== by 0x14C75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25664== by 0x14C1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25664== by 0x1095D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25664== by 0x108F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25664== by 0xF5CAD38: PetscInitialize (pinit.c:924) +==25664== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25664== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25664== by 0x129501: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25664== by 0x1249F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25664== by 0x126F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25664== by 0x126E65: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25664== by 0x127479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25664== by 0x1231F5: main (TestSimulationsWithParabolicBoxDomainPdeModifier.cpp:18) +==25664== +==25664== Open file descriptor 116: +==25664== +==25664== +==25664== Open file descriptor 113: +==25664== +==25664== +==25664== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt +==25664== +==25664== +==25664== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25664== +==25664== +==25664== +==25664== HEAP SUMMARY: +==25664== in use at exit: 618,295 bytes in 8,235 blocks +==25664== total heap usage: 4,545,499 allocs, 4,537,264 frees, 1,827,474,641 bytes allocated +==25664== +==25664== LEAK SUMMARY: +==25664== definitely lost: 0 bytes in 0 blocks +==25664== indirectly lost: 0 bytes in 0 blocks +==25664== possibly lost: 0 bytes in 0 blocks +==25664== still reachable: 56 bytes in 3 blocks +==25664== suppressed: 618,239 bytes in 8,232 blocks +==25664== Reachable blocks (those to which a pointer was found) are not shown. +==25664== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25664== +==25664== For lists of detected and suppressed errors, rerun with: -s +==25664== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..a8bf8dd3e --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25665== Memcheck, a memory error detector +==25665== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25665== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25665== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithParabolicGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25665== Parent PID: 23966 +==25665== +==25665== +==25665== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25665== Open file descriptor 12: +==25665== at 0x1105507D: pipe (pipe.c:29) +==25665== by 0x196BC07D: ??? +==25665== by 0x14C1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25665== by 0x1095D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25665== by 0x108F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25665== by 0xF5CAD38: PetscInitialize (pinit.c:924) +==25665== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25665== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25665== by 0x128F89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25665== by 0x123EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25665== by 0x1269CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25665== by 0x12686A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25665== by 0x126F01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25665== by 0x1222D5: main (TestSimulationsWithParabolicGrowingDomainPdeModifier.cpp:19) +==25665== +==25665== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25665== at 0x11059A1C: __open_nocancel (open64_nocancel.c:39) +==25665== by 0x10FDDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25665== by 0x10859822: ??? +==25665== by 0x1085996F: ??? +==25665== by 0x14CBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25665== by 0x14CBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25665== by 0x14C75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25665== by 0x14C1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25665== by 0x1095D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25665== by 0x108F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25665== by 0xF5CAD38: PetscInitialize (pinit.c:924) +==25665== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25665== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25665== by 0x128F89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25665== by 0x123EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25665== by 0x1269CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25665== by 0x12686A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25665== by 0x126F01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25665== by 0x1222D5: main (TestSimulationsWithParabolicGrowingDomainPdeModifier.cpp:19) +==25665== +==25665== Open file descriptor 116: +==25665== +==25665== +==25665== Open file descriptor 113: +==25665== +==25665== +==25665== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt +==25665== +==25665== +==25665== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25665== +==25665== +==25665== +==25665== HEAP SUMMARY: +==25665== in use at exit: 618,295 bytes in 8,235 blocks +==25665== total heap usage: 5,584,987 allocs, 5,576,752 frees, 1,885,960,138 bytes allocated +==25665== +==25665== LEAK SUMMARY: +==25665== definitely lost: 0 bytes in 0 blocks +==25665== indirectly lost: 0 bytes in 0 blocks +==25665== possibly lost: 0 bytes in 0 blocks +==25665== still reachable: 56 bytes in 3 blocks +==25665== suppressed: 618,239 bytes in 8,232 blocks +==25665== Reachable blocks (those to which a pointer was found) are not shown. +==25665== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25665== +==25665== For lists of detected and suppressed errors, rerun with: -s +==25665== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestSingleOdeWntCellCycleModel_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSingleOdeWntCellCycleModel_valgrind.txt new file mode 100644 index 000000000..5723fa1c1 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSingleOdeWntCellCycleModel_valgrind.txt @@ -0,0 +1,73 @@ +==40244== Memcheck, a memory error detector +==40244== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40244== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40244== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSingleOdeWntCellCycleModel -malloc_debug -malloc_dump -memory_info +==40244== Parent PID: 23966 +==40244== +==40244== +==40244== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40244== Open file descriptor 12: +==40244== at 0x1095707D: pipe (pipe.c:29) +==40244== by 0x1B37E07D: ??? +==40244== by 0x154C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40244== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40244== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40244== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40244== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40244== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40244== by 0x18BB23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40244== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40244== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40244== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40244== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40244== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) +==40244== +==40244== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40244== at 0x1095BA1C: __open_nocancel (open64_nocancel.c:39) +==40244== by 0x108DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40244== by 0xED9B822: ??? +==40244== by 0xED9B96F: ??? +==40244== by 0x1556D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40244== by 0x1556D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40244== by 0x15523922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40244== by 0x154C82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40244== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40244== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40244== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40244== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40244== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40244== by 0x18BB23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40244== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40244== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40244== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40244== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40244== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) +==40244== +==40244== Open file descriptor 116: +==40244== +==40244== +==40244== Open file descriptor 113: +==40244== +==40244== +==40244== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSingleOdeWntCellCycleModel_valgrind.txt +==40244== +==40244== +==40244== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40244== +==40244== +==40244== +==40244== HEAP SUMMARY: +==40244== in use at exit: 618,526 bytes in 8,241 blocks +==40244== total heap usage: 263,089 allocs, 254,848 frees, 1,357,294,032 bytes allocated +==40244== +==40244== LEAK SUMMARY: +==40244== definitely lost: 0 bytes in 0 blocks +==40244== indirectly lost: 0 bytes in 0 blocks +==40244== possibly lost: 0 bytes in 0 blocks +==40244== still reachable: 200 bytes in 5 blocks +==40244== suppressed: 618,326 bytes in 8,236 blocks +==40244== Reachable blocks (those to which a pointer was found) are not shown. +==40244== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40244== +==40244== For lists of detected and suppressed errors, rerun with: -s +==40244== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestSloughingCellKillers_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSloughingCellKillers_valgrind.txt new file mode 100644 index 000000000..986f3d5fe --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSloughingCellKillers_valgrind.txt @@ -0,0 +1,73 @@ +==40443== Memcheck, a memory error detector +==40443== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40443== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40443== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSloughingCellKillers -malloc_debug -malloc_dump -memory_info +==40443== Parent PID: 23966 +==40443== +==40443== +==40443== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40443== Open file descriptor 12: +==40443== at 0x126A107D: pipe (pipe.c:29) +==40443== by 0x1B37E07D: ??? +==40443== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40443== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40443== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40443== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40443== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40443== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40443== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40443== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40443== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40443== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40443== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40443== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) +==40443== +==40443== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40443== at 0x126A5A1C: __open_nocancel (open64_nocancel.c:39) +==40443== by 0x12629BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40443== by 0x109FE822: ??? +==40443== by 0x109FE96F: ??? +==40443== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40443== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40443== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40443== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40443== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40443== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40443== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40443== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40443== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40443== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40443== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40443== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40443== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40443== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40443== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) +==40443== +==40443== Open file descriptor 116: +==40443== +==40443== +==40443== Open file descriptor 113: +==40443== +==40443== +==40443== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSloughingCellKillers_valgrind.txt +==40443== +==40443== +==40443== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40443== +==40443== +==40443== +==40443== HEAP SUMMARY: +==40443== in use at exit: 618,382 bytes in 8,239 blocks +==40443== total heap usage: 100,673 allocs, 92,434 frees, 1,342,470,447 bytes allocated +==40443== +==40443== LEAK SUMMARY: +==40443== definitely lost: 0 bytes in 0 blocks +==40443== indirectly lost: 0 bytes in 0 blocks +==40443== possibly lost: 0 bytes in 0 blocks +==40443== still reachable: 56 bytes in 3 blocks +==40443== suppressed: 618,326 bytes in 8,236 blocks +==40443== Reachable blocks (those to which a pointer was found) are not shown. +==40443== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40443== +==40443== For lists of detected and suppressed errors, rerun with: -s +==40443== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestSolveLaplacianWithQuadratics_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSolveLaplacianWithQuadratics_valgrind.txt new file mode 100644 index 000000000..31fdf6133 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSolveLaplacianWithQuadratics_valgrind.txt @@ -0,0 +1,73 @@ +==25071== Memcheck, a memory error detector +==25071== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25071== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25071== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolveLaplacianWithQuadratics -malloc_debug -malloc_dump -memory_info +==25071== Parent PID: 23966 +==25071== +==25071== +==25071== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25071== Open file descriptor 12: +==25071== at 0x84EF07D: pipe (pipe.c:29) +==25071== by 0x104E607D: ??? +==25071== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25071== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25071== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25071== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25071== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25071== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25071== by 0x15D32E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25071== by 0x1582D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25071== by 0x15AFE6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25071== by 0x15AEE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25071== by 0x15B4F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25071== by 0x156AD5: main (TestSolveLaplacianWithQuadratics.cpp:18) +==25071== +==25071== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25071== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25071== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25071== by 0x7D43822: ??? +==25071== by 0x7D4396F: ??? +==25071== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25071== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25071== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25071== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25071== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25071== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25071== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25071== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25071== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25071== by 0x15D32E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25071== by 0x1582D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25071== by 0x15AFE6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25071== by 0x15AEE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25071== by 0x15B4F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25071== by 0x156AD5: main (TestSolveLaplacianWithQuadratics.cpp:18) +==25071== +==25071== Open file descriptor 116: +==25071== +==25071== +==25071== Open file descriptor 113: +==25071== +==25071== +==25071== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolveLaplacianWithQuadratics_valgrind.txt +==25071== +==25071== +==25071== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25071== +==25071== +==25071== +==25071== HEAP SUMMARY: +==25071== in use at exit: 618,270 bytes in 8,238 blocks +==25071== total heap usage: 317,734 allocs, 309,496 frees, 1,357,887,819 bytes allocated +==25071== +==25071== LEAK SUMMARY: +==25071== definitely lost: 0 bytes in 0 blocks +==25071== indirectly lost: 0 bytes in 0 blocks +==25071== possibly lost: 0 bytes in 0 blocks +==25071== still reachable: 24 bytes in 2 blocks +==25071== suppressed: 618,246 bytes in 8,236 blocks +==25071== Reachable blocks (those to which a pointer was found) are not shown. +==25071== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25071== +==25071== For lists of detected and suppressed errors, rerun with: -s +==25071== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestSolvingCoupledPdes_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSolvingCoupledPdes_valgrind.txt new file mode 100644 index 000000000..7cc199af5 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSolvingCoupledPdes_valgrind.txt @@ -0,0 +1,73 @@ +==25069== Memcheck, a memory error detector +==25069== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25069== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25069== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolvingCoupledPdes -malloc_debug -malloc_dump -memory_info +==25069== Parent PID: 23966 +==25069== +==25069== +==25069== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25069== Open file descriptor 12: +==25069== at 0x84EF07D: pipe (pipe.c:29) +==25069== by 0x104E607D: ??? +==25069== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25069== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25069== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25069== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25069== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25069== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25069== by 0x143C06: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25069== by 0x13ECB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25069== by 0x1418BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25069== by 0x1417B9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25069== by 0x141DCD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25069== by 0x13D4B5: main (TestSolvingCoupledPdes.cpp:18) +==25069== +==25069== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25069== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25069== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25069== by 0x7D43822: ??? +==25069== by 0x7D4396F: ??? +==25069== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25069== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25069== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25069== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25069== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25069== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25069== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25069== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25069== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25069== by 0x143C06: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25069== by 0x13ECB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25069== by 0x1418BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25069== by 0x1417B9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25069== by 0x141DCD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25069== by 0x13D4B5: main (TestSolvingCoupledPdes.cpp:18) +==25069== +==25069== Open file descriptor 116: +==25069== +==25069== +==25069== Open file descriptor 113: +==25069== +==25069== +==25069== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingCoupledPdes_valgrind.txt +==25069== +==25069== +==25069== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25069== +==25069== +==25069== +==25069== HEAP SUMMARY: +==25069== in use at exit: 618,270 bytes in 8,238 blocks +==25069== total heap usage: 362,666 allocs, 354,428 frees, 1,353,739,821 bytes allocated +==25069== +==25069== LEAK SUMMARY: +==25069== definitely lost: 0 bytes in 0 blocks +==25069== indirectly lost: 0 bytes in 0 blocks +==25069== possibly lost: 0 bytes in 0 blocks +==25069== still reachable: 24 bytes in 2 blocks +==25069== suppressed: 618,246 bytes in 8,236 blocks +==25069== Reachable blocks (those to which a pointer was found) are not shown. +==25069== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25069== +==25069== For lists of detected and suppressed errors, rerun with: -s +==25069== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestSolvingNonlinearPdesTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSolvingNonlinearPdesTutorial_valgrind.txt new file mode 100644 index 000000000..f48e82bb4 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSolvingNonlinearPdesTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==25086== Memcheck, a memory error detector +==25086== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25086== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25086== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolvingNonlinearPdesTutorial -malloc_debug -malloc_dump -memory_info +==25086== Parent PID: 23966 +==25086== +==25086== +==25086== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25086== Open file descriptor 12: +==25086== at 0x84EF07D: pipe (pipe.c:29) +==25086== by 0x104E607D: ??? +==25086== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25086== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25086== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25086== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25086== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25086== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25086== by 0x1389EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25086== by 0x133AFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25086== by 0x1366A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25086== by 0x1365A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25086== by 0x136BB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25086== by 0x1322D5: main (TestSolvingNonlinearPdesTutorial.cpp:18) +==25086== +==25086== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25086== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25086== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25086== by 0x7D43822: ??? +==25086== by 0x7D4396F: ??? +==25086== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25086== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25086== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25086== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25086== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25086== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25086== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25086== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25086== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25086== by 0x1389EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25086== by 0x133AFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25086== by 0x1366A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25086== by 0x1365A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25086== by 0x136BB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25086== by 0x1322D5: main (TestSolvingNonlinearPdesTutorial.cpp:18) +==25086== +==25086== Open file descriptor 116: +==25086== +==25086== +==25086== Open file descriptor 113: +==25086== +==25086== +==25086== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingNonlinearPdesTutorial_valgrind.txt +==25086== +==25086== +==25086== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25086== +==25086== +==25086== +==25086== HEAP SUMMARY: +==25086== in use at exit: 618,270 bytes in 8,238 blocks +==25086== total heap usage: 243,597 allocs, 235,359 frees, 1,341,284,724 bytes allocated +==25086== +==25086== LEAK SUMMARY: +==25086== definitely lost: 0 bytes in 0 blocks +==25086== indirectly lost: 0 bytes in 0 blocks +==25086== possibly lost: 0 bytes in 0 blocks +==25086== still reachable: 24 bytes in 2 blocks +==25086== suppressed: 618,246 bytes in 8,236 blocks +==25086== Reachable blocks (those to which a pointer was found) are not shown. +==25086== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25086== +==25086== For lists of detected and suppressed errors, rerun with: -s +==25086== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestSolvingOdesTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSolvingOdesTutorial_valgrind.txt new file mode 100644 index 000000000..2f3acb7d4 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSolvingOdesTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==24988== Memcheck, a memory error detector +==24988== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24988== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24988== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestSolvingOdesTutorial -malloc_debug -malloc_dump -memory_info +==24988== Parent PID: 23966 +==24988== +==24988== +==24988== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24988== Open file descriptor 12: +==24988== at 0x63C507D: pipe (pipe.c:29) +==24988== by 0xB1EC07D: ??? +==24988== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24988== by 0x5FFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24988== by 0x5F93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24988== by 0x4C65D38: PetscInitialize (pinit.c:924) +==24988== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24988== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24988== by 0x118D39: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24988== by 0x114693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24988== by 0x1169AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24988== by 0x1168A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24988== by 0x116EBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24988== by 0x1128D5: main (TestSolvingOdesTutorial.cpp:18) +==24988== +==24988== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24988== at 0x63C9A1C: __open_nocancel (open64_nocancel.c:39) +==24988== by 0x634DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24988== by 0x5EF4822: ??? +==24988== by 0x5EF496F: ??? +==24988== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24988== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24988== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24988== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24988== by 0x5FFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24988== by 0x5F93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24988== by 0x4C65D38: PetscInitialize (pinit.c:924) +==24988== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24988== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24988== by 0x118D39: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24988== by 0x114693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24988== by 0x1169AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24988== by 0x1168A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24988== by 0x116EBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24988== by 0x1128D5: main (TestSolvingOdesTutorial.cpp:18) +==24988== +==24988== Open file descriptor 116: +==24988== +==24988== +==24988== Open file descriptor 113: +==24988== +==24988== +==24988== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingOdesTutorial_valgrind.txt +==24988== +==24988== +==24988== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24988== +==24988== +==24988== +==24988== HEAP SUMMARY: +==24988== in use at exit: 617,934 bytes in 8,238 blocks +==24988== total heap usage: 45,184 allocs, 36,946 frees, 1,338,243,892 bytes allocated +==24988== +==24988== LEAK SUMMARY: +==24988== definitely lost: 0 bytes in 0 blocks +==24988== indirectly lost: 0 bytes in 0 blocks +==24988== possibly lost: 0 bytes in 0 blocks +==24988== still reachable: 24 bytes in 2 blocks +==24988== suppressed: 617,910 bytes in 8,236 blocks +==24988== Reachable blocks (those to which a pointer was found) are not shown. +==24988== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24988== +==24988== For lists of detected and suppressed errors, rerun with: -s +==24988== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestSolvingStiffOdeSystems_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSolvingStiffOdeSystems_valgrind.txt new file mode 100644 index 000000000..51e703df9 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSolvingStiffOdeSystems_valgrind.txt @@ -0,0 +1,73 @@ +==24968== Memcheck, a memory error detector +==24968== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24968== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24968== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestSolvingStiffOdeSystems -malloc_debug -malloc_dump -memory_info +==24968== Parent PID: 23966 +==24968== +==24968== +==24968== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24968== Open file descriptor 12: +==24968== at 0x4F1007D: pipe (pipe.c:29) +==24968== by 0xB1EE07D: ??? +==24968== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24968== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24968== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24968== by 0x5308D38: PetscInitialize (pinit.c:924) +==24968== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24968== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24968== by 0x118D00: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24968== by 0x114431: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24968== by 0x1167AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24968== by 0x1166A9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24968== by 0x116CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24968== by 0x112835: main (TestSolvingStiffOdeSystems.cpp:18) +==24968== +==24968== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24968== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39) +==24968== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24968== by 0x4B76822: ??? +==24968== by 0x4B7696F: ??? +==24968== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24968== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24968== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24968== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24968== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24968== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24968== by 0x5308D38: PetscInitialize (pinit.c:924) +==24968== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24968== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24968== by 0x118D00: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24968== by 0x114431: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24968== by 0x1167AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24968== by 0x1166A9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24968== by 0x116CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24968== by 0x112835: main (TestSolvingStiffOdeSystems.cpp:18) +==24968== +==24968== Open file descriptor 116: +==24968== +==24968== +==24968== Open file descriptor 113: +==24968== +==24968== +==24968== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingStiffOdeSystems_valgrind.txt +==24968== +==24968== +==24968== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24968== +==24968== +==24968== +==24968== HEAP SUMMARY: +==24968== in use at exit: 617,934 bytes in 8,238 blocks +==24968== total heap usage: 47,081 allocs, 38,843 frees, 1,338,227,918 bytes allocated +==24968== +==24968== LEAK SUMMARY: +==24968== definitely lost: 0 bytes in 0 blocks +==24968== indirectly lost: 0 bytes in 0 blocks +==24968== possibly lost: 0 bytes in 0 blocks +==24968== still reachable: 24 bytes in 2 blocks +==24968== suppressed: 617,910 bytes in 8,236 blocks +==24968== Reachable blocks (those to which a pointer was found) are not shown. +==24968== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24968== +==24968== For lists of detected and suppressed errors, rerun with: -s +==24968== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestSpiralWaveAndPhase_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSpiralWaveAndPhase_valgrind.txt new file mode 100644 index 000000000..fc4464327 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSpiralWaveAndPhase_valgrind.txt @@ -0,0 +1,73 @@ +==43453== Memcheck, a memory error detector +==43453== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43453== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43453== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestSpiralWaveAndPhase -malloc_debug -malloc_dump -memory_info +==43453== Parent PID: 23966 +==43453== +==43453== +==43453== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43453== Open file descriptor 12: +==43453== at 0x84D307D: pipe (pipe.c:29) +==43453== by 0x104E607D: ??? +==43453== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43453== by 0x8B56418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43453== by 0x8AEFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43453== by 0x6A98D38: PetscInitialize (pinit.c:924) +==43453== by 0x696F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43453== by 0x696F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43453== by 0x119000: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43453== by 0x1147B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43453== by 0x116FAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43453== by 0x116EA7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43453== by 0x1174BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43453== by 0x112FB5: main (TestSpiralWaveAndPhase.cpp:18) +==43453== +==43453== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43453== at 0x84D7A1C: __open_nocancel (open64_nocancel.c:39) +==43453== by 0x845BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43453== by 0x7D27822: ??? +==43453== by 0x7D2796F: ??? +==43453== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43453== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43453== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43453== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43453== by 0x8B56418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43453== by 0x8AEFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43453== by 0x6A98D38: PetscInitialize (pinit.c:924) +==43453== by 0x696F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43453== by 0x696F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43453== by 0x119000: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43453== by 0x1147B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43453== by 0x116FAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43453== by 0x116EA7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43453== by 0x1174BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43453== by 0x112FB5: main (TestSpiralWaveAndPhase.cpp:18) +==43453== +==43453== Open file descriptor 116: +==43453== +==43453== +==43453== Open file descriptor 113: +==43453== +==43453== +==43453== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSpiralWaveAndPhase_valgrind.txt +==43453== +==43453== +==43453== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43453== +==43453== +==43453== +==43453== HEAP SUMMARY: +==43453== in use at exit: 618,679 bytes in 8,244 blocks +==43453== total heap usage: 4,351,543 allocs, 4,343,299 frees, 1,902,290,348 bytes allocated +==43453== +==43453== LEAK SUMMARY: +==43453== definitely lost: 0 bytes in 0 blocks +==43453== indirectly lost: 0 bytes in 0 blocks +==43453== possibly lost: 0 bytes in 0 blocks +==43453== still reachable: 24 bytes in 2 blocks +==43453== suppressed: 618,655 bytes in 8,242 blocks +==43453== Reachable blocks (those to which a pointer was found) are not shown. +==43453== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43453== +==43453== For lists of detected and suppressed errors, rerun with: -s +==43453== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 31) diff --git a/log-files/2024-10-14_17-51-53/TestSteadyStateRunner_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSteadyStateRunner_valgrind.txt new file mode 100644 index 000000000..6a6804cdf --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSteadyStateRunner_valgrind.txt @@ -0,0 +1,73 @@ +==42641== Memcheck, a memory error detector +==42641== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42641== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42641== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestSteadyStateRunner -malloc_debug -malloc_dump -memory_info +==42641== Parent PID: 23966 +==42641== +==42641== +==42641== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42641== Open file descriptor 12: +==42641== at 0x9C6807D: pipe (pipe.c:29) +==42641== by 0x1433707D: ??? +==42641== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42641== by 0x989B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42641== by 0x9834D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42641== by 0x8508D38: PetscInitialize (pinit.c:924) +==42641== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42641== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42641== by 0x115FF5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42641== by 0x1114AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42641== by 0x113CD0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42641== by 0x113B70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42641== by 0x114207: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42641== by 0x10F8D5: main (TestSteadyStateRunner.cpp:19) +==42641== +==42641== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42641== at 0x9C6CA1C: __open_nocancel (open64_nocancel.c:39) +==42641== by 0x9BF0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42641== by 0x9797822: ??? +==42641== by 0x979796F: ??? +==42641== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42641== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42641== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42641== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42641== by 0x989B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42641== by 0x9834D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42641== by 0x8508D38: PetscInitialize (pinit.c:924) +==42641== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42641== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42641== by 0x115FF5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42641== by 0x1114AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42641== by 0x113CD0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42641== by 0x113B70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42641== by 0x114207: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42641== by 0x10F8D5: main (TestSteadyStateRunner.cpp:19) +==42641== +==42641== Open file descriptor 116: +==42641== +==42641== +==42641== Open file descriptor 113: +==42641== +==42641== +==42641== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSteadyStateRunner_valgrind.txt +==42641== +==42641== +==42641== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42641== +==42641== +==42641== +==42641== HEAP SUMMARY: +==42641== in use at exit: 618,279 bytes in 8,234 blocks +==42641== total heap usage: 50,555 allocs, 42,321 frees, 1,338,884,730 bytes allocated +==42641== +==42641== LEAK SUMMARY: +==42641== definitely lost: 0 bytes in 0 blocks +==42641== indirectly lost: 0 bytes in 0 blocks +==42641== possibly lost: 0 bytes in 0 blocks +==42641== still reachable: 24 bytes in 2 blocks +==42641== suppressed: 618,255 bytes in 8,232 blocks +==42641== Reachable blocks (those to which a pointer was found) are not shown. +==42641== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42641== +==42641== For lists of detected and suppressed errors, rerun with: -s +==42641== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestStepSizeException_valgrind.txt b/log-files/2024-10-14_17-51-53/TestStepSizeException_valgrind.txt new file mode 100644 index 000000000..c5151fd8a --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestStepSizeException_valgrind.txt @@ -0,0 +1,73 @@ +==37248== Memcheck, a memory error detector +==37248== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==37248== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==37248== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestStepSizeException -malloc_debug -malloc_dump -memory_info +==37248== Parent PID: 23966 +==37248== +==37248== +==37248== FILE DESCRIPTORS: 9 open (3 std) at exit. +==37248== Open file descriptor 12: +==37248== at 0x4CB407D: pipe (pipe.c:29) +==37248== by 0xAEAD07D: ??? +==37248== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==37248== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37248== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37248== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==37248== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==37248== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==37248== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==37248== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==37248== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==37248== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==37248== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==37248== by 0x10D735: main (TestStepSizeException.cpp:19) +==37248== +==37248== Open file descriptor 8: /dev/shm/open_mpi.0000 +==37248== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==37248== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==37248== by 0x4934822: ??? +==37248== by 0x493496F: ??? +==37248== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37248== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37248== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37248== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==37248== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37248== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37248== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==37248== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==37248== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==37248== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==37248== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==37248== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==37248== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==37248== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==37248== by 0x10D735: main (TestStepSizeException.cpp:19) +==37248== +==37248== Open file descriptor 116: +==37248== +==37248== +==37248== Open file descriptor 113: +==37248== +==37248== +==37248== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStepSizeException_valgrind.txt +==37248== +==37248== +==37248== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==37248== +==37248== +==37248== +==37248== HEAP SUMMARY: +==37248== in use at exit: 617,870 bytes in 8,238 blocks +==37248== total heap usage: 44,915 allocs, 36,677 frees, 1,338,159,734 bytes allocated +==37248== +==37248== LEAK SUMMARY: +==37248== definitely lost: 0 bytes in 0 blocks +==37248== indirectly lost: 0 bytes in 0 blocks +==37248== possibly lost: 0 bytes in 0 blocks +==37248== still reachable: 24 bytes in 2 blocks +==37248== suppressed: 617,846 bytes in 8,236 blocks +==37248== Reachable blocks (those to which a pointer was found) are not shown. +==37248== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==37248== +==37248== For lists of detected and suppressed errors, rerun with: -s +==37248== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestStimulusBoundaryCondition_valgrind.txt b/log-files/2024-10-14_17-51-53/TestStimulusBoundaryCondition_valgrind.txt new file mode 100644 index 000000000..1f0ae0a3f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestStimulusBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==43501== Memcheck, a memory error detector +==43501== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43501== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43501== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulusBoundaryCondition -malloc_debug -malloc_dump -memory_info +==43501== Parent PID: 23966 +==43501== +==43501== +==43501== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43501== Open file descriptor 12: +==43501== at 0xA56F07D: pipe (pipe.c:29) +==43501== by 0x1433707D: ??? +==43501== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43501== by 0xBC6A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43501== by 0xBC03D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43501== by 0xA8FAD38: PetscInitialize (pinit.c:924) +==43501== by 0xA19D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43501== by 0xA19D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43501== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43501== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43501== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43501== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43501== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43501== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) +==43501== +==43501== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43501== at 0xA573A1C: __open_nocancel (open64_nocancel.c:39) +==43501== by 0xA4F7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43501== by 0xA1D7822: ??? +==43501== by 0xA1D796F: ??? +==43501== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43501== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43501== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43501== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43501== by 0xBC6A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43501== by 0xBC03D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43501== by 0xA8FAD38: PetscInitialize (pinit.c:924) +==43501== by 0xA19D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43501== by 0xA19D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43501== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43501== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43501== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43501== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43501== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43501== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) +==43501== +==43501== Open file descriptor 116: +==43501== +==43501== +==43501== Open file descriptor 113: +==43501== +==43501== +==43501== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulusBoundaryCondition_valgrind.txt +==43501== +==43501== +==43501== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43501== +==43501== +==43501== +==43501== HEAP SUMMARY: +==43501== in use at exit: 618,350 bytes in 8,238 blocks +==43501== total heap usage: 48,817 allocs, 40,579 frees, 1,338,522,384 bytes allocated +==43501== +==43501== LEAK SUMMARY: +==43501== definitely lost: 0 bytes in 0 blocks +==43501== indirectly lost: 0 bytes in 0 blocks +==43501== possibly lost: 0 bytes in 0 blocks +==43501== still reachable: 24 bytes in 2 blocks +==43501== suppressed: 618,326 bytes in 8,236 blocks +==43501== Reachable blocks (those to which a pointer was found) are not shown. +==43501== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43501== +==43501== For lists of detected and suppressed errors, rerun with: -s +==43501== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestStimulusFactory_valgrind.txt b/log-files/2024-10-14_17-51-53/TestStimulusFactory_valgrind.txt new file mode 100644 index 000000000..81ae280db --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestStimulusFactory_valgrind.txt @@ -0,0 +1,73 @@ +==41262== Memcheck, a memory error detector +==41262== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41262== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41262== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulusFactory -malloc_debug -malloc_dump -memory_info +==41262== Parent PID: 23966 +==41262== +==41262== +==41262== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41262== Open file descriptor 12: +==41262== at 0xA7CE07D: pipe (pipe.c:29) +==41262== by 0x1433707D: ??? +==41262== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41262== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41262== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41262== by 0xAB57D38: PetscInitialize (pinit.c:924) +==41262== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41262== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41262== by 0x122E20: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41262== by 0x11DDCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41262== by 0x120996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41262== by 0x120836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41262== by 0x120ECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41262== by 0x11C1F5: main (TestStimulusFactory.cpp:19) +==41262== +==41262== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41262== at 0xA7D2A1C: __open_nocancel (open64_nocancel.c:39) +==41262== by 0xA756BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41262== by 0xA0EF822: ??? +==41262== by 0xA0EF96F: ??? +==41262== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41262== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41262== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41262== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41262== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41262== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41262== by 0xAB57D38: PetscInitialize (pinit.c:924) +==41262== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41262== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41262== by 0x122E20: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41262== by 0x11DDCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41262== by 0x120996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41262== by 0x120836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41262== by 0x120ECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41262== by 0x11C1F5: main (TestStimulusFactory.cpp:19) +==41262== +==41262== Open file descriptor 116: +==41262== +==41262== +==41262== Open file descriptor 113: +==41262== +==41262== +==41262== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulusFactory_valgrind.txt +==41262== +==41262== +==41262== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41262== +==41262== +==41262== +==41262== HEAP SUMMARY: +==41262== in use at exit: 618,830 bytes in 8,248 blocks +==41262== total heap usage: 180,618 allocs, 172,370 frees, 1,362,117,208 bytes allocated +==41262== +==41262== LEAK SUMMARY: +==41262== definitely lost: 0 bytes in 0 blocks +==41262== indirectly lost: 0 bytes in 0 blocks +==41262== possibly lost: 0 bytes in 0 blocks +==41262== still reachable: 24 bytes in 2 blocks +==41262== suppressed: 618,806 bytes in 8,246 blocks +==41262== Reachable blocks (those to which a pointer was found) are not shown. +==41262== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41262== +==41262== For lists of detected and suppressed errors, rerun with: -s +==41262== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 38) diff --git a/log-files/2024-10-14_17-51-53/TestStimulus_valgrind.txt b/log-files/2024-10-14_17-51-53/TestStimulus_valgrind.txt new file mode 100644 index 000000000..4bb1795ae --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestStimulus_valgrind.txt @@ -0,0 +1,73 @@ +==43486== Memcheck, a memory error detector +==43486== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43486== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43486== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulus -malloc_debug -malloc_dump -memory_info +==43486== Parent PID: 23966 +==43486== +==43486== +==43486== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43486== Open file descriptor 12: +==43486== at 0x9B4F07D: pipe (pipe.c:29) +==43486== by 0x1433707D: ??? +==43486== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43486== by 0x969B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43486== by 0x9634D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43486== by 0x832BD38: PetscInitialize (pinit.c:924) +==43486== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43486== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43486== by 0x123427: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43486== by 0x11E823: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43486== by 0x120E66: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43486== by 0x120D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43486== by 0x121375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43486== by 0x11D025: main (TestStimulus.cpp:18) +==43486== +==43486== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43486== at 0x9B53A1C: __open_nocancel (open64_nocancel.c:39) +==43486== by 0x9AD7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43486== by 0x81D5822: ??? +==43486== by 0x81D596F: ??? +==43486== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43486== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43486== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43486== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43486== by 0x969B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43486== by 0x9634D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43486== by 0x832BD38: PetscInitialize (pinit.c:924) +==43486== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43486== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43486== by 0x123427: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43486== by 0x11E823: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43486== by 0x120E66: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43486== by 0x120D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43486== by 0x121375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43486== by 0x11D025: main (TestStimulus.cpp:18) +==43486== +==43486== Open file descriptor 116: +==43486== +==43486== +==43486== Open file descriptor 113: +==43486== +==43486== +==43486== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulus_valgrind.txt +==43486== +==43486== +==43486== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43486== +==43486== +==43486== +==43486== HEAP SUMMARY: +==43486== in use at exit: 618,350 bytes in 8,238 blocks +==43486== total heap usage: 48,979 allocs, 40,741 frees, 1,338,551,690 bytes allocated +==43486== +==43486== LEAK SUMMARY: +==43486== definitely lost: 0 bytes in 0 blocks +==43486== indirectly lost: 0 bytes in 0 blocks +==43486== possibly lost: 0 bytes in 0 blocks +==43486== still reachable: 24 bytes in 2 blocks +==43486== suppressed: 618,326 bytes in 8,236 blocks +==43486== Reachable blocks (those to which a pointer was found) are not shown. +==43486== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43486== +==43486== For lists of detected and suppressed errors, rerun with: -s +==43486== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestStokesFlowAssembler_valgrind.txt b/log-files/2024-10-14_17-51-53/TestStokesFlowAssembler_valgrind.txt new file mode 100644 index 000000000..6560c9fbe --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestStokesFlowAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25282== Memcheck, a memory error detector +==25282== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25282== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25282== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestStokesFlowAssembler -malloc_debug -malloc_dump -memory_info +==25282== Parent PID: 23966 +==25282== +==25282== +==25282== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25282== Open file descriptor 12: +==25282== at 0x866F07D: pipe (pipe.c:29) +==25282== by 0x106E907D: ??? +==25282== by 0xC4F54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25282== by 0x8CD6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25282== by 0x8C6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25282== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25282== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25282== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25282== by 0x12CFE0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25282== by 0x128839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25282== by 0x12AC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25282== by 0x12AB53: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25282== by 0x12B167: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25282== by 0x126EB5: main (TestStokesFlowAssembler.cpp:18) +==25282== +==25282== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25282== at 0x8673A1C: __open_nocancel (open64_nocancel.c:39) +==25282== by 0x85F7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25282== by 0x7EC3822: ??? +==25282== by 0x7EC396F: ??? +==25282== by 0xC59A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25282== by 0xC59A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25282== by 0xC550922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25282== by 0xC4F52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25282== by 0x8CD6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25282== by 0x8C6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25282== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25282== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25282== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25282== by 0x12CFE0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25282== by 0x128839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25282== by 0x12AC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25282== by 0x12AB53: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25282== by 0x12B167: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25282== by 0x126EB5: main (TestStokesFlowAssembler.cpp:18) +==25282== +==25282== Open file descriptor 116: +==25282== +==25282== +==25282== Open file descriptor 113: +==25282== +==25282== +==25282== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStokesFlowAssembler_valgrind.txt +==25282== +==25282== +==25282== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25282== +==25282== +==25282== +==25282== HEAP SUMMARY: +==25282== in use at exit: 618,286 bytes in 8,238 blocks +==25282== total heap usage: 48,398 allocs, 40,160 frees, 1,338,713,241 bytes allocated +==25282== +==25282== LEAK SUMMARY: +==25282== definitely lost: 0 bytes in 0 blocks +==25282== indirectly lost: 0 bytes in 0 blocks +==25282== possibly lost: 0 bytes in 0 blocks +==25282== still reachable: 24 bytes in 2 blocks +==25282== suppressed: 618,262 bytes in 8,236 blocks +==25282== Reachable blocks (those to which a pointer was found) are not shown. +==25282== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25282== +==25282== For lists of detected and suppressed errors, rerun with: -s +==25282== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-10-14_17-51-53/TestStokesFlowSolver_valgrind.txt b/log-files/2024-10-14_17-51-53/TestStokesFlowSolver_valgrind.txt new file mode 100644 index 000000000..3ecc3d5a5 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestStokesFlowSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25290== Memcheck, a memory error detector +==25290== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25290== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25290== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestStokesFlowSolver -malloc_debug -malloc_dump -memory_info +==25290== Parent PID: 23966 +==25290== +==25290== +==25290== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25290== Open file descriptor 12: +==25290== at 0x866F07D: pipe (pipe.c:29) +==25290== by 0x106E907D: ??? +==25290== by 0xC4F54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25290== by 0x8CD6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25290== by 0x8C6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25290== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25290== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25290== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25290== by 0x158044: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25290== by 0x1529D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25290== by 0x155C4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25290== by 0x155B49: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25290== by 0x15615D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25290== by 0x1511D5: main (TestStokesFlowSolver.cpp:18) +==25290== +==25290== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25290== at 0x8673A1C: __open_nocancel (open64_nocancel.c:39) +==25290== by 0x85F7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25290== by 0x7EC3822: ??? +==25290== by 0x7EC396F: ??? +==25290== by 0xC59A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25290== by 0xC59A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25290== by 0xC550922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25290== by 0xC4F52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25290== by 0x8CD6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25290== by 0x8C6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25290== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25290== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25290== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25290== by 0x158044: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25290== by 0x1529D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25290== by 0x155C4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25290== by 0x155B49: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25290== by 0x15615D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25290== by 0x1511D5: main (TestStokesFlowSolver.cpp:18) +==25290== +==25290== Open file descriptor 116: +==25290== +==25290== +==25290== Open file descriptor 113: +==25290== +==25290== +==25290== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStokesFlowSolver_valgrind.txt +==25290== +==25290== +==25290== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25290== +==25290== +==25290== +==25290== HEAP SUMMARY: +==25290== in use at exit: 618,215 bytes in 8,234 blocks +==25290== total heap usage: 557,705 allocs, 549,471 frees, 1,530,978,562 bytes allocated +==25290== +==25290== LEAK SUMMARY: +==25290== definitely lost: 0 bytes in 0 blocks +==25290== indirectly lost: 0 bytes in 0 blocks +==25290== possibly lost: 0 bytes in 0 blocks +==25290== still reachable: 24 bytes in 2 blocks +==25290== suppressed: 618,191 bytes in 8,232 blocks +==25290== Reachable blocks (those to which a pointer was found) are not shown. +==25290== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25290== +==25290== For lists of detected and suppressed errors, rerun with: -s +==25290== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestStreeterFibreGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestStreeterFibreGenerator_valgrind.txt new file mode 100644 index 000000000..02a3fd562 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestStreeterFibreGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==41304== Memcheck, a memory error detector +==41304== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41304== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41304== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStreeterFibreGenerator -malloc_debug -malloc_dump -memory_info +==41304== Parent PID: 23966 +==41304== +==41304== +==41304== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41304== Open file descriptor 12: +==41304== at 0xB9CE07D: pipe (pipe.c:29) +==41304== by 0x1433707D: ??? +==41304== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41304== by 0xB2BC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41304== by 0xB255D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41304== by 0x9F29D38: PetscInitialize (pinit.c:924) +==41304== by 0x9E001D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41304== by 0x9E00227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41304== by 0x11B488: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41304== by 0x11684D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41304== by 0x1192DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41304== by 0x11917C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41304== by 0x119813: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41304== by 0x114C75: main (TestStreeterFibreGenerator.cpp:19) +==41304== +==41304== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41304== at 0xB9D2A1C: __open_nocancel (open64_nocancel.c:39) +==41304== by 0xB956BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41304== by 0xB1B8822: ??? +==41304== by 0xB1B896F: ??? +==41304== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41304== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41304== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41304== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41304== by 0xB2BC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41304== by 0xB255D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41304== by 0x9F29D38: PetscInitialize (pinit.c:924) +==41304== by 0x9E001D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41304== by 0x9E00227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41304== by 0x11B488: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41304== by 0x11684D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41304== by 0x1192DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41304== by 0x11917C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41304== by 0x119813: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41304== by 0x114C75: main (TestStreeterFibreGenerator.cpp:19) +==41304== +==41304== Open file descriptor 116: +==41304== +==41304== +==41304== Open file descriptor 113: +==41304== +==41304== +==41304== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStreeterFibreGenerator_valgrind.txt +==41304== +==41304== +==41304== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41304== +==41304== +==41304== +==41304== HEAP SUMMARY: +==41304== in use at exit: 618,279 bytes in 8,234 blocks +==41304== total heap usage: 4,490,128 allocs, 4,481,894 frees, 1,575,791,103 bytes allocated +==41304== +==41304== LEAK SUMMARY: +==41304== definitely lost: 0 bytes in 0 blocks +==41304== indirectly lost: 0 bytes in 0 blocks +==41304== possibly lost: 0 bytes in 0 blocks +==41304== still reachable: 24 bytes in 2 blocks +==41304== suppressed: 618,255 bytes in 8,232 blocks +==41304== Reachable blocks (those to which a pointer was found) are not shown. +==41304== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41304== +==41304== For lists of detected and suppressed errors, rerun with: -s +==41304== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestSuperellipseGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestSuperellipseGenerator_valgrind.txt new file mode 100644 index 000000000..f29f08e3b --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestSuperellipseGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24884== Memcheck, a memory error detector +==24884== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24884== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24884== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestSuperellipseGenerator -malloc_debug -malloc_dump -memory_info +==24884== Parent PID: 23966 +==24884== +==24884== +==24884== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24884== Open file descriptor 12: +==24884== at 0x7EB307D: pipe (pipe.c:29) +==24884== by 0x100D407D: ??? +==24884== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24884== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24884== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24884== by 0x6686D38: PetscInitialize (pinit.c:924) +==24884== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24884== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24884== by 0x1163ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24884== by 0x111E13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24884== by 0x114280: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24884== by 0x11417B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24884== by 0x11478F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24884== by 0x110615: main (TestSuperellipseGenerator.cpp:18) +==24884== +==24884== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24884== at 0x7EB7A1C: __open_nocancel (open64_nocancel.c:39) +==24884== by 0x7E3BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24884== by 0x7915822: ??? +==24884== by 0x791596F: ??? +==24884== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24884== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24884== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24884== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24884== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24884== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24884== by 0x6686D38: PetscInitialize (pinit.c:924) +==24884== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24884== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24884== by 0x1163ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24884== by 0x111E13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24884== by 0x114280: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24884== by 0x11417B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24884== by 0x11478F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24884== by 0x110615: main (TestSuperellipseGenerator.cpp:18) +==24884== +==24884== Open file descriptor 116: +==24884== +==24884== +==24884== Open file descriptor 113: +==24884== +==24884== +==24884== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSuperellipseGenerator_valgrind.txt +==24884== +==24884== +==24884== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24884== +==24884== +==24884== +==24884== HEAP SUMMARY: +==24884== in use at exit: 618,238 bytes in 8,238 blocks +==24884== total heap usage: 47,341 allocs, 39,103 frees, 1,362,407,009 bytes allocated +==24884== +==24884== LEAK SUMMARY: +==24884== definitely lost: 0 bytes in 0 blocks +==24884== indirectly lost: 0 bytes in 0 blocks +==24884== possibly lost: 0 bytes in 0 blocks +==24884== still reachable: 24 bytes in 2 blocks +==24884== suppressed: 618,214 bytes in 8,236 blocks +==24884== Reachable blocks (those to which a pointer was found) are not shown. +==24884== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24884== +==24884== For lists of detected and suppressed errors, rerun with: -s +==24884== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestT2SwapCellKiller_valgrind.txt b/log-files/2024-10-14_17-51-53/TestT2SwapCellKiller_valgrind.txt new file mode 100644 index 000000000..f441677ca --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestT2SwapCellKiller_valgrind.txt @@ -0,0 +1,73 @@ +==26117== Memcheck, a memory error detector +==26117== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26117== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26117== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestT2SwapCellKiller -malloc_debug -malloc_dump -memory_info +==26117== Parent PID: 23966 +==26117== +==26117== +==26117== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26117== Open file descriptor 12: +==26117== at 0x10CFA07D: pipe (pipe.c:29) +==26117== by 0x196BC07D: ??? +==26117== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26117== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26117== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26117== by 0xF292D38: PetscInitialize (pinit.c:924) +==26117== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26117== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26117== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26117== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26117== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26117== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26117== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26117== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) +==26117== +==26117== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26117== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==26117== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26117== by 0xF13E822: ??? +==26117== by 0xF13E96F: ??? +==26117== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26117== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26117== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26117== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26117== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26117== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26117== by 0xF292D38: PetscInitialize (pinit.c:924) +==26117== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26117== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26117== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26117== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26117== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26117== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26117== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26117== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) +==26117== +==26117== Open file descriptor 116: +==26117== +==26117== +==26117== Open file descriptor 113: +==26117== +==26117== +==26117== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestT2SwapCellKiller_valgrind.txt +==26117== +==26117== +==26117== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26117== +==26117== +==26117== +==26117== HEAP SUMMARY: +==26117== in use at exit: 618,366 bytes in 8,239 blocks +==26117== total heap usage: 77,899 allocs, 69,660 frees, 1,343,660,023 bytes allocated +==26117== +==26117== LEAK SUMMARY: +==26117== definitely lost: 0 bytes in 0 blocks +==26117== indirectly lost: 0 bytes in 0 blocks +==26117== possibly lost: 0 bytes in 0 blocks +==26117== still reachable: 56 bytes in 3 blocks +==26117== suppressed: 618,310 bytes in 8,236 blocks +==26117== Reachable blocks (those to which a pointer was found) are not shown. +==26117== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26117== +==26117== For lists of detected and suppressed errors, rerun with: -s +==26117== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestTargetAreaLinearGrowthModifier_valgrind.txt b/log-files/2024-10-14_17-51-53/TestTargetAreaLinearGrowthModifier_valgrind.txt new file mode 100644 index 000000000..2f1865974 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestTargetAreaLinearGrowthModifier_valgrind.txt @@ -0,0 +1,73 @@ +==37670== Memcheck, a memory error detector +==37670== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==37670== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==37670== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTargetAreaLinearGrowthModifier -malloc_debug -malloc_dump -memory_info +==37670== Parent PID: 23966 +==37670== +==37670== +==37670== FILE DESCRIPTORS: 9 open (3 std) at exit. +==37670== Open file descriptor 12: +==37670== at 0x10CFA07D: pipe (pipe.c:29) +==37670== by 0x196BC07D: ??? +==37670== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==37670== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37670== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37670== by 0xF292D38: PetscInitialize (pinit.c:924) +==37670== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==37670== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==37670== by 0x139DC3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==37670== by 0x13253D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==37670== by 0x13583C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==37670== by 0x1356DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==37670== by 0x135D73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==37670== by 0x130965: main (TestTargetAreaLinearGrowthModifier.cpp:19) +==37670== +==37670== Open file descriptor 8: /dev/shm/open_mpi.0000 +==37670== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==37670== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==37670== by 0xF13E822: ??? +==37670== by 0xF13E96F: ??? +==37670== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37670== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37670== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37670== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==37670== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37670== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37670== by 0xF292D38: PetscInitialize (pinit.c:924) +==37670== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==37670== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==37670== by 0x139DC3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==37670== by 0x13253D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==37670== by 0x13583C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==37670== by 0x1356DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==37670== by 0x135D73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==37670== by 0x130965: main (TestTargetAreaLinearGrowthModifier.cpp:19) +==37670== +==37670== Open file descriptor 116: +==37670== +==37670== +==37670== Open file descriptor 113: +==37670== +==37670== +==37670== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTargetAreaLinearGrowthModifier_valgrind.txt +==37670== +==37670== +==37670== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==37670== +==37670== +==37670== +==37670== HEAP SUMMARY: +==37670== in use at exit: 618,366 bytes in 8,239 blocks +==37670== total heap usage: 584,183 allocs, 575,944 frees, 1,436,129,259 bytes allocated +==37670== +==37670== LEAK SUMMARY: +==37670== definitely lost: 0 bytes in 0 blocks +==37670== indirectly lost: 0 bytes in 0 blocks +==37670== possibly lost: 0 bytes in 0 blocks +==37670== still reachable: 56 bytes in 3 blocks +==37670== suppressed: 618,310 bytes in 8,236 blocks +==37670== Reachable blocks (those to which a pointer was found) are not shown. +==37670== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==37670== +==37670== For lists of detected and suppressed errors, rerun with: -s +==37670== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestTetrahedralMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestTetrahedralMesh_valgrind.txt new file mode 100644 index 000000000..f02220f3f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24451== Memcheck, a memory error detector +==24451== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24451== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24451== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==24451== Parent PID: 23966 +==24451== +==24451== +==24451== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24451== Open file descriptor 12: +==24451== at 0x823C07D: pipe (pipe.c:29) +==24451== by 0x100D407D: ??? +==24451== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24451== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24451== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24451== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24451== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24451== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24451== by 0x1518AA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24451== by 0x14BB9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24451== by 0x14F310: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24451== by 0x14F1B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24451== by 0x14F847: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24451== by 0x149FC5: main (TestTetrahedralMesh.cpp:19) +==24451== +==24451== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24451== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24451== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24451== by 0x6597822: ??? +==24451== by 0x659796F: ??? +==24451== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24451== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24451== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24451== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24451== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24451== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24451== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24451== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24451== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24451== by 0x1518AA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24451== by 0x14BB9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24451== by 0x14F310: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24451== by 0x14F1B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24451== by 0x14F847: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24451== by 0x149FC5: main (TestTetrahedralMesh.cpp:19) +==24451== +==24451== Open file descriptor 116: +==24451== +==24451== +==24451== Open file descriptor 113: +==24451== +==24451== +==24451== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTetrahedralMesh_valgrind.txt +==24451== +==24451== +==24451== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24451== +==24451== +==24451== +==24451== HEAP SUMMARY: +==24451== in use at exit: 620,719 bytes in 8,235 blocks +==24451== total heap usage: 1,739,315 allocs, 1,731,080 frees, 1,420,006,956 bytes allocated +==24451== +==24451== LEAK SUMMARY: +==24451== definitely lost: 0 bytes in 0 blocks +==24451== indirectly lost: 0 bytes in 0 blocks +==24451== possibly lost: 0 bytes in 0 blocks +==24451== still reachable: 2,576 bytes in 3 blocks +==24451== suppressed: 618,143 bytes in 8,232 blocks +==24451== Reachable blocks (those to which a pointer was found) are not shown. +==24451== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24451== +==24451== For lists of detected and suppressed errors, rerun with: -s +==24451== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestTimeAdaptivityController_valgrind.txt b/log-files/2024-10-14_17-51-53/TestTimeAdaptivityController_valgrind.txt new file mode 100644 index 000000000..18748207e --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestTimeAdaptivityController_valgrind.txt @@ -0,0 +1,73 @@ +==25214== Memcheck, a memory error detector +==25214== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25214== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25214== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestTimeAdaptivityController -malloc_debug -malloc_dump -memory_info +==25214== Parent PID: 23966 +==25214== +==25214== +==25214== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25214== Open file descriptor 12: +==25214== at 0x4CB407D: pipe (pipe.c:29) +==25214== by 0xAEAD07D: ??? +==25214== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25214== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25214== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25214== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==25214== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25214== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25214== by 0x111F68: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25214== by 0x10DB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25214== by 0x10FE62: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25214== by 0x10FD5D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25214== by 0x110371: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25214== by 0x10C375: main (TestTimeAdaptivityController.cpp:18) +==25214== +==25214== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25214== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==25214== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25214== by 0x4934822: ??? +==25214== by 0x493496F: ??? +==25214== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25214== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25214== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25214== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25214== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25214== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25214== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==25214== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25214== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25214== by 0x111F68: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25214== by 0x10DB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25214== by 0x10FE62: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25214== by 0x10FD5D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25214== by 0x110371: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25214== by 0x10C375: main (TestTimeAdaptivityController.cpp:18) +==25214== +==25214== Open file descriptor 116: +==25214== +==25214== +==25214== Open file descriptor 113: +==25214== +==25214== +==25214== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimeAdaptivityController_valgrind.txt +==25214== +==25214== +==25214== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25214== +==25214== +==25214== +==25214== HEAP SUMMARY: +==25214== in use at exit: 617,870 bytes in 8,238 blocks +==25214== total heap usage: 44,908 allocs, 36,670 frees, 1,338,159,318 bytes allocated +==25214== +==25214== LEAK SUMMARY: +==25214== definitely lost: 0 bytes in 0 blocks +==25214== indirectly lost: 0 bytes in 0 blocks +==25214== possibly lost: 0 bytes in 0 blocks +==25214== still reachable: 24 bytes in 2 blocks +==25214== suppressed: 617,846 bytes in 8,236 blocks +==25214== Reachable blocks (those to which a pointer was found) are not shown. +==25214== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25214== +==25214== For lists of detected and suppressed errors, rerun with: -s +==25214== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestTimeStepper_valgrind.txt b/log-files/2024-10-14_17-51-53/TestTimeStepper_valgrind.txt new file mode 100644 index 000000000..c660c8dde --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestTimeStepper_valgrind.txt @@ -0,0 +1,73 @@ +==24195== Memcheck, a memory error detector +==24195== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24195== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24195== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestTimeStepper -malloc_debug -malloc_dump -memory_info +==24195== Parent PID: 23966 +==24195== +==24195== +==24195== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24195== Open file descriptor 12: +==24195== at 0x629207D: pipe (pipe.c:29) +==24195== by 0xAEAB07D: ??? +==24195== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24195== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24195== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24195== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24195== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24195== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24195== by 0x123201: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24195== by 0x11DDE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24195== by 0x120BB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24195== by 0x120A58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24195== by 0x1210EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24195== by 0x11C205: main (TestTimeStepper.cpp:19) +==24195== +==24195== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24195== at 0x6296A1C: __open_nocancel (open64_nocancel.c:39) +==24195== by 0x621ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24195== by 0x4934822: ??? +==24195== by 0x493496F: ??? +==24195== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24195== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24195== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24195== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24195== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24195== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24195== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24195== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24195== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24195== by 0x123201: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24195== by 0x11DDE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24195== by 0x120BB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24195== by 0x120A58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24195== by 0x1210EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24195== by 0x11C205: main (TestTimeStepper.cpp:19) +==24195== +==24195== Open file descriptor 116: +==24195== +==24195== +==24195== Open file descriptor 113: +==24195== +==24195== +==24195== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimeStepper_valgrind.txt +==24195== +==24195== +==24195== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24195== +==24195== +==24195== +==24195== HEAP SUMMARY: +==24195== in use at exit: 617,870 bytes in 8,238 blocks +==24195== total heap usage: 45,118 allocs, 36,880 frees, 1,338,210,247 bytes allocated +==24195== +==24195== LEAK SUMMARY: +==24195== definitely lost: 0 bytes in 0 blocks +==24195== indirectly lost: 0 bytes in 0 blocks +==24195== possibly lost: 0 bytes in 0 blocks +==24195== still reachable: 24 bytes in 2 blocks +==24195== suppressed: 617,846 bytes in 8,236 blocks +==24195== Reachable blocks (those to which a pointer was found) are not shown. +==24195== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24195== +==24195== For lists of detected and suppressed errors, rerun with: -s +==24195== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestTimer_valgrind.txt b/log-files/2024-10-14_17-51-53/TestTimer_valgrind.txt new file mode 100644 index 000000000..f2c7b6974 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestTimer_valgrind.txt @@ -0,0 +1,73 @@ +==24194== Memcheck, a memory error detector +==24194== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24194== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24194== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestTimer -malloc_debug -malloc_dump -memory_info +==24194== Parent PID: 23966 +==24194== +==24194== +==24194== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24194== Open file descriptor 12: +==24194== at 0x4D9B07D: pipe (pipe.c:29) +==24194== by 0xAEAD07D: ??? +==24194== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24194== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24194== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24194== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24194== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24194== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24194== by 0x112190: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24194== by 0x10DE53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24194== by 0x11025A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24194== by 0x110155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24194== by 0x110769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24194== by 0x10C655: main (TestTimer.cpp:18) +==24194== +==24194== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24194== at 0x4D9FA1C: __open_nocancel (open64_nocancel.c:39) +==24194== by 0x4D23BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24194== by 0x4934822: ??? +==24194== by 0x493496F: ??? +==24194== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24194== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24194== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24194== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24194== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24194== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24194== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24194== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24194== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24194== by 0x112190: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24194== by 0x10DE53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24194== by 0x11025A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24194== by 0x110155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24194== by 0x110769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24194== by 0x10C655: main (TestTimer.cpp:18) +==24194== +==24194== Open file descriptor 116: +==24194== +==24194== +==24194== Open file descriptor 113: +==24194== +==24194== +==24194== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimer_valgrind.txt +==24194== +==24194== +==24194== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24194== +==24194== +==24194== +==24194== HEAP SUMMARY: +==24194== in use at exit: 617,870 bytes in 8,238 blocks +==24194== total heap usage: 44,913 allocs, 36,675 frees, 1,338,159,811 bytes allocated +==24194== +==24194== LEAK SUMMARY: +==24194== definitely lost: 0 bytes in 0 blocks +==24194== indirectly lost: 0 bytes in 0 blocks +==24194== possibly lost: 0 bytes in 0 blocks +==24194== still reachable: 24 bytes in 2 blocks +==24194== suppressed: 617,846 bytes in 8,236 blocks +==24194== Reachable blocks (those to which a pointer was found) are not shown. +==24194== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24194== +==24194== For lists of detected and suppressed errors, rerun with: -s +==24194== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestToroidal2dMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestToroidal2dMesh_valgrind.txt new file mode 100644 index 000000000..c2da2b546 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestToroidal2dMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24569== Memcheck, a memory error detector +==24569== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24569== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24569== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidal2dMesh -malloc_debug -malloc_dump -memory_info +==24569== Parent PID: 23966 +==24569== +==24569== +==24569== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24569== Open file descriptor 12: +==24569== at 0x823C07D: pipe (pipe.c:29) +==24569== by 0x100D407D: ??? +==24569== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24569== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24569== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24569== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24569== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24569== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24569== by 0x125B47: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24569== by 0x120A23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24569== by 0x123378: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24569== by 0x123274: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24569== by 0x123887: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24569== by 0x11F225: main (TestToroidal2dMesh.cpp:18) +==24569== +==24569== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24569== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24569== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24569== by 0x6597822: ??? +==24569== by 0x659796F: ??? +==24569== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24569== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24569== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24569== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24569== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24569== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24569== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24569== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24569== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24569== by 0x125B47: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24569== by 0x120A23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24569== by 0x123378: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24569== by 0x123274: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24569== by 0x123887: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24569== by 0x11F225: main (TestToroidal2dMesh.cpp:18) +==24569== +==24569== Open file descriptor 116: +==24569== +==24569== +==24569== Open file descriptor 113: +==24569== +==24569== +==24569== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidal2dMesh_valgrind.txt +==24569== +==24569== +==24569== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24569== +==24569== +==24569== +==24569== HEAP SUMMARY: +==24569== in use at exit: 618,238 bytes in 8,238 blocks +==24569== total heap usage: 165,853 allocs, 157,615 frees, 1,352,688,627 bytes allocated +==24569== +==24569== LEAK SUMMARY: +==24569== definitely lost: 0 bytes in 0 blocks +==24569== indirectly lost: 0 bytes in 0 blocks +==24569== possibly lost: 0 bytes in 0 blocks +==24569== still reachable: 24 bytes in 2 blocks +==24569== suppressed: 618,214 bytes in 8,236 blocks +==24569== Reachable blocks (those to which a pointer was found) are not shown. +==24569== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24569== +==24569== For lists of detected and suppressed errors, rerun with: -s +==24569== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestToroidal2dVertexMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestToroidal2dVertexMesh_valgrind.txt new file mode 100644 index 000000000..c01264851 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestToroidal2dVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24724== Memcheck, a memory error detector +==24724== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24724== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24724== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidal2dVertexMesh -malloc_debug -malloc_dump -memory_info +==24724== Parent PID: 23966 +==24724== +==24724== +==24724== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24724== Open file descriptor 12: +==24724== at 0x823C07D: pipe (pipe.c:29) +==24724== by 0x100D407D: ??? +==24724== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24724== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24724== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24724== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24724== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24724== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24724== by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24724== by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24724== by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24724== by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24724== by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24724== by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19) +==24724== +==24724== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24724== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24724== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24724== by 0x6597822: ??? +==24724== by 0x659796F: ??? +==24724== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24724== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24724== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24724== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24724== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24724== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24724== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24724== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24724== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24724== by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24724== by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24724== by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24724== by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24724== by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24724== by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19) +==24724== +==24724== Open file descriptor 116: +==24724== +==24724== +==24724== Open file descriptor 113: +==24724== +==24724== +==24724== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidal2dVertexMesh_valgrind.txt +==24724== +==24724== +==24724== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24724== +==24724== +==24724== +==24724== HEAP SUMMARY: +==24724== in use at exit: 618,238 bytes in 8,238 blocks +==24724== total heap usage: 145,230 allocs, 136,992 frees, 1,346,880,246 bytes allocated +==24724== +==24724== LEAK SUMMARY: +==24724== definitely lost: 0 bytes in 0 blocks +==24724== indirectly lost: 0 bytes in 0 blocks +==24724== possibly lost: 0 bytes in 0 blocks +==24724== still reachable: 24 bytes in 2 blocks +==24724== suppressed: 618,214 bytes in 8,236 blocks +==24724== Reachable blocks (those to which a pointer was found) are not shown. +==24724== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24724== +==24724== For lists of detected and suppressed errors, rerun with: -s +==24724== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-10-14_17-51-53/TestToroidalHoneycombMeshGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestToroidalHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..d03ecf591 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestToroidalHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24578== Memcheck, a memory error detector +==24578== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24578== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24578== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidalHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24578== Parent PID: 23966 +==24578== +==24578== +==24578== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24578== Open file descriptor 12: +==24578== at 0x811107D: pipe (pipe.c:29) +==24578== by 0x100D407D: ??? +==24578== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24578== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24578== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24578== by 0x6686D38: PetscInitialize (pinit.c:924) +==24578== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24578== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24578== by 0x11717D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24578== by 0x1125CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24578== by 0x114F48: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24578== by 0x114DE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24578== by 0x11547F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24578== by 0x1109F5: main (TestToroidalHoneycombMeshGenerator.cpp:19) +==24578== +==24578== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24578== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24578== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24578== by 0x7915822: ??? +==24578== by 0x791596F: ??? +==24578== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24578== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24578== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24578== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24578== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24578== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24578== by 0x6686D38: PetscInitialize (pinit.c:924) +==24578== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24578== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24578== by 0x11717D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24578== by 0x1125CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24578== by 0x114F48: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24578== by 0x114DE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24578== by 0x11547F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24578== by 0x1109F5: main (TestToroidalHoneycombMeshGenerator.cpp:19) +==24578== +==24578== Open file descriptor 116: +==24578== +==24578== +==24578== Open file descriptor 113: +==24578== +==24578== +==24578== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidalHoneycombMeshGenerator_valgrind.txt +==24578== +==24578== +==24578== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24578== +==24578== +==24578== +==24578== HEAP SUMMARY: +==24578== in use at exit: 618,238 bytes in 8,238 blocks +==24578== total heap usage: 105,623 allocs, 97,385 frees, 1,342,905,903 bytes allocated +==24578== +==24578== LEAK SUMMARY: +==24578== definitely lost: 0 bytes in 0 blocks +==24578== indirectly lost: 0 bytes in 0 blocks +==24578== possibly lost: 0 bytes in 0 blocks +==24578== still reachable: 24 bytes in 2 blocks +==24578== suppressed: 618,214 bytes in 8,236 blocks +==24578== Reachable blocks (those to which a pointer was found) are not shown. +==24578== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24578== +==24578== For lists of detected and suppressed errors, rerun with: -s +==24578== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..308bee9e0 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24725== Memcheck, a memory error detector +==24725== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24725== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24725== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidalHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24725== Parent PID: 23966 +==24725== +==24725== +==24725== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24725== Open file descriptor 12: +==24725== at 0x811107D: pipe (pipe.c:29) +==24725== by 0x100D407D: ??? +==24725== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24725== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24725== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24725== by 0x6686D38: PetscInitialize (pinit.c:924) +==24725== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24725== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24725== by 0x11A0CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24725== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24725== by 0x116246: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24725== by 0x1160E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24725== by 0x11677D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24725== by 0x111D75: main (TestToroidalHoneycombVertexMeshGenerator.cpp:19) +==24725== +==24725== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24725== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24725== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24725== by 0x7915822: ??? +==24725== by 0x791596F: ??? +==24725== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24725== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24725== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24725== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24725== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24725== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24725== by 0x6686D38: PetscInitialize (pinit.c:924) +==24725== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24725== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24725== by 0x11A0CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24725== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24725== by 0x116246: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24725== by 0x1160E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24725== by 0x11677D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24725== by 0x111D75: main (TestToroidalHoneycombVertexMeshGenerator.cpp:19) +==24725== +==24725== Open file descriptor 116: +==24725== +==24725== +==24725== Open file descriptor 113: +==24725== +==24725== +==24725== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt +==24725== +==24725== +==24725== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24725== +==24725== +==24725== +==24725== HEAP SUMMARY: +==24725== in use at exit: 618,238 bytes in 8,238 blocks +==24725== total heap usage: 48,581 allocs, 40,343 frees, 1,338,602,820 bytes allocated +==24725== +==24725== LEAK SUMMARY: +==24725== definitely lost: 0 bytes in 0 blocks +==24725== indirectly lost: 0 bytes in 0 blocks +==24725== possibly lost: 0 bytes in 0 blocks +==24725== still reachable: 24 bytes in 2 blocks +==24725== suppressed: 618,214 bytes in 8,236 blocks +==24725== Reachable blocks (those to which a pointer was found) are not shown. +==24725== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24725== +==24725== For lists of detected and suppressed errors, rerun with: -s +==24725== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestTransformations_valgrind.txt b/log-files/2024-10-14_17-51-53/TestTransformations_valgrind.txt new file mode 100644 index 000000000..f4e353e59 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestTransformations_valgrind.txt @@ -0,0 +1,73 @@ +==24460== Memcheck, a memory error detector +==24460== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24460== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24460== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTransformations -malloc_debug -malloc_dump -memory_info +==24460== Parent PID: 23966 +==24460== +==24460== +==24460== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24460== Open file descriptor 12: +==24460== at 0x6D4307D: pipe (pipe.c:29) +==24460== by 0x100D407D: ??? +==24460== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24460== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24460== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24460== by 0x701FD38: PetscInitialize (pinit.c:924) +==24460== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24460== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24460== by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24460== by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24460== by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24460== by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24460== by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24460== by 0x11FEB5: main (TestTransformations.cpp:19) +==24460== +==24460== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24460== at 0x6D47A1C: __open_nocancel (open64_nocancel.c:39) +==24460== by 0x6CCBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24460== by 0x6597822: ??? +==24460== by 0x659796F: ??? +==24460== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24460== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24460== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24460== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24460== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24460== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24460== by 0x701FD38: PetscInitialize (pinit.c:924) +==24460== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24460== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24460== by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24460== by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24460== by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24460== by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24460== by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24460== by 0x11FEB5: main (TestTransformations.cpp:19) +==24460== +==24460== Open file descriptor 116: +==24460== +==24460== +==24460== Open file descriptor 113: +==24460== +==24460== +==24460== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTransformations_valgrind.txt +==24460== +==24460== +==24460== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24460== +==24460== +==24460== +==24460== HEAP SUMMARY: +==24460== in use at exit: 618,238 bytes in 8,238 blocks +==24460== total heap usage: 113,752 allocs, 105,514 frees, 1,343,577,109 bytes allocated +==24460== +==24460== LEAK SUMMARY: +==24460== definitely lost: 0 bytes in 0 blocks +==24460== indirectly lost: 0 bytes in 0 blocks +==24460== possibly lost: 0 bytes in 0 blocks +==24460== still reachable: 24 bytes in 2 blocks +==24460== suppressed: 618,214 bytes in 8,236 blocks +==24460== Reachable blocks (those to which a pointer was found) are not shown. +==24460== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24460== +==24460== For lists of detected and suppressed errors, rerun with: -s +==24460== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-10-14_17-51-53/TestTrianglesMeshReader_valgrind.txt b/log-files/2024-10-14_17-51-53/TestTrianglesMeshReader_valgrind.txt new file mode 100644 index 000000000..d908f5c63 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestTrianglesMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24610== Memcheck, a memory error detector +==24610== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24610== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24610== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTrianglesMeshReader -malloc_debug -malloc_dump -memory_info +==24610== Parent PID: 23966 +==24610== +==24610== +==24610== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24610== Open file descriptor 12: +==24610== at 0x811107D: pipe (pipe.c:29) +==24610== by 0x100D407D: ??? +==24610== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24610== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24610== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24610== by 0x6686D38: PetscInitialize (pinit.c:924) +==24610== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24610== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24610== by 0x124FBD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24610== by 0x11FF0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24610== by 0x122F54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24610== by 0x122DF4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24610== by 0x12348B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24610== by 0x11E335: main (TestTrianglesMeshReader.cpp:19) +==24610== +==24610== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24610== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24610== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24610== by 0x7915822: ??? +==24610== by 0x791596F: ??? +==24610== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24610== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24610== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24610== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24610== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24610== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24610== by 0x6686D38: PetscInitialize (pinit.c:924) +==24610== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24610== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24610== by 0x124FBD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24610== by 0x11FF0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24610== by 0x122F54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24610== by 0x122DF4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24610== by 0x12348B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24610== by 0x11E335: main (TestTrianglesMeshReader.cpp:19) +==24610== +==24610== Open file descriptor 116: +==24610== +==24610== +==24610== Open file descriptor 113: +==24610== +==24610== +==24610== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTrianglesMeshReader_valgrind.txt +==24610== +==24610== +==24610== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24610== +==24610== +==24610== +==24610== HEAP SUMMARY: +==24610== in use at exit: 618,238 bytes in 8,238 blocks +==24610== total heap usage: 149,660 allocs, 141,422 frees, 1,349,785,653 bytes allocated +==24610== +==24610== LEAK SUMMARY: +==24610== definitely lost: 0 bytes in 0 blocks +==24610== indirectly lost: 0 bytes in 0 blocks +==24610== possibly lost: 0 bytes in 0 blocks +==24610== still reachable: 24 bytes in 2 blocks +==24610== suppressed: 618,214 bytes in 8,236 blocks +==24610== Reachable blocks (those to which a pointer was found) are not shown. +==24610== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24610== +==24610== For lists of detected and suppressed errors, rerun with: -s +==24610== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestTysonNovak2001OdeSystem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestTysonNovak2001OdeSystem_valgrind.txt new file mode 100644 index 000000000..5e62d7def --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestTysonNovak2001OdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25851== Memcheck, a memory error detector +==25851== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25851== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25851== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info +==25851== Parent PID: 23966 +==25851== +==25851== +==25851== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25851== Open file descriptor 12: +==25851== at 0xDB5007D: pipe (pipe.c:29) +==25851== by 0x196BD07D: ??? +==25851== by 0x14C774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25851== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25851== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25851== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25851== by 0xD7561D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25851== by 0xD756227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25851== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25851== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25851== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25851== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25851== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25851== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) +==25851== +==25851== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25851== at 0xDB54A1C: __open_nocancel (open64_nocancel.c:39) +==25851== by 0xDAD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25851== by 0xD790822: ??? +==25851== by 0xD79096F: ??? +==25851== by 0x14D1C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25851== by 0x14D1C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25851== by 0x14CD2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25851== by 0x14C772DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25851== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25851== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25851== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25851== by 0xD7561D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25851== by 0xD756227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25851== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25851== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25851== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25851== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25851== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25851== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) +==25851== +==25851== Open file descriptor 116: +==25851== +==25851== +==25851== Open file descriptor 113: +==25851== +==25851== +==25851== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt +==25851== +==25851== +==25851== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25851== +==25851== +==25851== +==25851== HEAP SUMMARY: +==25851== in use at exit: 618,334 bytes in 8,238 blocks +==25851== total heap usage: 58,418 allocs, 50,180 frees, 1,339,316,294 bytes allocated +==25851== +==25851== LEAK SUMMARY: +==25851== definitely lost: 0 bytes in 0 blocks +==25851== indirectly lost: 0 bytes in 0 blocks +==25851== possibly lost: 0 bytes in 0 blocks +==25851== still reachable: 24 bytes in 2 blocks +==25851== suppressed: 618,310 bytes in 8,236 blocks +==25851== Reachable blocks (those to which a pointer was found) are not shown. +==25851== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25851== +==25851== For lists of detected and suppressed errors, rerun with: -s +==25851== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-10-14_17-51-53/TestUblasCustomFunctions_valgrind.txt b/log-files/2024-10-14_17-51-53/TestUblasCustomFunctions_valgrind.txt new file mode 100644 index 000000000..8325ec269 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestUblasCustomFunctions_valgrind.txt @@ -0,0 +1,73 @@ +==24327== Memcheck, a memory error detector +==24327== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24327== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24327== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestUblasCustomFunctions -malloc_debug -malloc_dump -memory_info +==24327== Parent PID: 23966 +==24327== +==24327== +==24327== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24327== Open file descriptor 12: +==24327== at 0x4E2A07D: pipe (pipe.c:29) +==24327== by 0xAF4107D: ??? +==24327== by 0x8A4D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24327== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24327== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24327== by 0x5075D38: PetscInitialize (pinit.c:924) +==24327== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24327== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24327== by 0x11B27E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24327== by 0x1164ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24327== by 0x118F42: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24327== by 0x118DE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24327== by 0x119479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24327== by 0x114915: main (TestUblasCustomFunctions.cpp:19) +==24327== +==24327== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24327== at 0x4E2EA1C: __open_nocancel (open64_nocancel.c:39) +==24327== by 0x4DB2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24327== by 0x49C3822: ??? +==24327== by 0x49C396F: ??? +==24327== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24327== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24327== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24327== by 0x8A4D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24327== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24327== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24327== by 0x5075D38: PetscInitialize (pinit.c:924) +==24327== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24327== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24327== by 0x11B27E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24327== by 0x1164ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24327== by 0x118F42: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24327== by 0x118DE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24327== by 0x119479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24327== by 0x114915: main (TestUblasCustomFunctions.cpp:19) +==24327== +==24327== Open file descriptor 116: +==24327== +==24327== +==24327== Open file descriptor 113: +==24327== +==24327== +==24327== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestUblasCustomFunctions_valgrind.txt +==24327== +==24327== +==24327== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24327== +==24327== +==24327== +==24327== HEAP SUMMARY: +==24327== in use at exit: 617,886 bytes in 8,238 blocks +==24327== total heap usage: 44,930 allocs, 36,692 frees, 1,338,162,567 bytes allocated +==24327== +==24327== LEAK SUMMARY: +==24327== definitely lost: 0 bytes in 0 blocks +==24327== indirectly lost: 0 bytes in 0 blocks +==24327== possibly lost: 0 bytes in 0 blocks +==24327== still reachable: 24 bytes in 2 blocks +==24327== suppressed: 617,862 bytes in 8,236 blocks +==24327== Reachable blocks (those to which a pointer was found) are not shown. +==24327== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24327== +==24327== For lists of detected and suppressed errors, rerun with: -s +==24327== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestUniformGridRandomFieldGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestUniformGridRandomFieldGenerator_valgrind.txt new file mode 100644 index 000000000..c5cde5589 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestUniformGridRandomFieldGenerator_valgrind.txt @@ -0,0 +1,36 @@ +==24882== Memcheck, a memory error detector +==24882== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24882== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24882== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestUniformGridRandomFieldGenerator -malloc_debug -malloc_dump -memory_info +==24882== Parent PID: 23966 +==24882== +==24882== +==24882== FILE DESCRIPTORS: 7 open (3 std) at exit. +==24882== Open file descriptor 116: +==24882== +==24882== +==24882== Open file descriptor 113: +==24882== +==24882== +==24882== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestUniformGridRandomFieldGenerator_valgrind.txt +==24882== +==24882== +==24882== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24882== +==24882== +==24882== +==24882== HEAP SUMMARY: +==24882== in use at exit: 2,576 bytes in 3 blocks +==24882== total heap usage: 5,572 allocs, 5,569 frees, 617,066 bytes allocated +==24882== +==24882== LEAK SUMMARY: +==24882== definitely lost: 0 bytes in 0 blocks +==24882== indirectly lost: 0 bytes in 0 blocks +==24882== possibly lost: 0 bytes in 0 blocks +==24882== still reachable: 2,576 bytes in 3 blocks +==24882== suppressed: 0 bytes in 0 blocks +==24882== Reachable blocks (those to which a pointer was found) are not shown. +==24882== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24882== +==24882== For lists of detected and suppressed errors, rerun with: -s +==24882== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-10-14_17-51-53/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt new file mode 100644 index 000000000..3290732fb --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==40383== Memcheck, a memory error detector +==40383== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40383== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40383== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVanLeeuwen2009WntSwatCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==40383== Parent PID: 23966 +==40383== +==40383== +==40383== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40383== Open file descriptor 12: +==40383== at 0x127FC07D: pipe (pipe.c:29) +==40383== by 0x1B37E07D: ??? +==40383== by 0x165344CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40383== by 0x12104418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40383== by 0x1209DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40383== by 0x10D94D38: PetscInitialize (pinit.c:924) +==40383== by 0x10C061D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40383== by 0x10C06227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40383== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40383== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40383== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40383== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40383== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40383== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) +==40383== +==40383== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40383== at 0x12800A1C: __open_nocancel (open64_nocancel.c:39) +==40383== by 0x12784BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40383== by 0x10C40822: ??? +==40383== by 0x10C4096F: ??? +==40383== by 0x165D96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40383== by 0x165D9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40383== by 0x1658F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40383== by 0x165342DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40383== by 0x12104418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40383== by 0x1209DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40383== by 0x10D94D38: PetscInitialize (pinit.c:924) +==40383== by 0x10C061D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40383== by 0x10C06227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40383== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40383== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40383== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40383== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40383== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40383== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) +==40383== +==40383== Open file descriptor 116: +==40383== +==40383== +==40383== Open file descriptor 113: +==40383== +==40383== +==40383== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt +==40383== +==40383== +==40383== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40383== +==40383== +==40383== +==40383== HEAP SUMMARY: +==40383== in use at exit: 618,350 bytes in 8,238 blocks +==40383== total heap usage: 519,316 allocs, 511,078 frees, 1,547,101,460 bytes allocated +==40383== +==40383== LEAK SUMMARY: +==40383== definitely lost: 0 bytes in 0 blocks +==40383== indirectly lost: 0 bytes in 0 blocks +==40383== possibly lost: 0 bytes in 0 blocks +==40383== still reachable: 24 bytes in 2 blocks +==40383== suppressed: 618,326 bytes in 8,236 blocks +==40383== Reachable blocks (those to which a pointer was found) are not shown. +==40383== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40383== +==40383== For lists of detected and suppressed errors, rerun with: -s +==40383== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestVentilationProblem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestVentilationProblem_valgrind.txt new file mode 100644 index 000000000..69c346d4f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestVentilationProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41073== Memcheck, a memory error detector +==41073== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41073== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41073== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestVentilationProblem -malloc_debug -malloc_dump -memory_info +==41073== Parent PID: 23966 +==41073== +==41073== +==41073== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41073== Open file descriptor 12: +==41073== at 0x6E6107D: pipe (pipe.c:29) +==41073== by 0x107B407D: ??? +==41073== by 0xC0204CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41073== by 0x83DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41073== by 0x8375D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41073== by 0x706CD38: PetscInitialize (pinit.c:924) +==41073== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41073== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41073== by 0x11769E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41073== by 0x1128D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41073== by 0x115638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41073== by 0x1154D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41073== by 0x115B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41073== by 0x110B55: main (TestVentilationProblem.cpp:19) +==41073== +==41073== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41073== at 0x6E65A1C: __open_nocancel (open64_nocancel.c:39) +==41073== by 0x6DE9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41073== by 0x66B7822: ??? +==41073== by 0x66B796F: ??? +==41073== by 0xC0C56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41073== by 0xC0C5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41073== by 0xC07B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41073== by 0xC0202DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41073== by 0x83DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41073== by 0x8375D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41073== by 0x706CD38: PetscInitialize (pinit.c:924) +==41073== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41073== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41073== by 0x11769E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41073== by 0x1128D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41073== by 0x115638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41073== by 0x1154D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41073== by 0x115B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41073== by 0x110B55: main (TestVentilationProblem.cpp:19) +==41073== +==41073== Open file descriptor 116: +==41073== +==41073== +==41073== Open file descriptor 113: +==41073== +==41073== +==41073== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVentilationProblem_valgrind.txt +==41073== +==41073== +==41073== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41073== +==41073== +==41073== +==41073== HEAP SUMMARY: +==41073== in use at exit: 618,263 bytes in 8,234 blocks +==41073== total heap usage: 5,806,637 allocs, 5,798,403 frees, 1,825,960,270 bytes allocated +==41073== +==41073== LEAK SUMMARY: +==41073== definitely lost: 0 bytes in 0 blocks +==41073== indirectly lost: 0 bytes in 0 blocks +==41073== possibly lost: 0 bytes in 0 blocks +==41073== still reachable: 24 bytes in 2 blocks +==41073== suppressed: 618,239 bytes in 8,232 blocks +==41073== Reachable blocks (those to which a pointer was found) are not shown. +==41073== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41073== +==41073== For lists of detected and suppressed errors, rerun with: -s +==41073== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-10-14_17-51-53/TestVertexBasedCellPopulationForCrypt_valgrind.txt b/log-files/2024-10-14_17-51-53/TestVertexBasedCellPopulationForCrypt_valgrind.txt new file mode 100644 index 000000000..d233c634e --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestVertexBasedCellPopulationForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40444== Memcheck, a memory error detector +==40444== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40444== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40444== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info +==40444== Parent PID: 23966 +==40444== +==40444== +==40444== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40444== Open file descriptor 12: +==40444== at 0x1257807D: pipe (pipe.c:29) +==40444== by 0x1B37E07D: ??? +==40444== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40444== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40444== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40444== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40444== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40444== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40444== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40444== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40444== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40444== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40444== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40444== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) +==40444== +==40444== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40444== at 0x1257CA1C: __open_nocancel (open64_nocancel.c:39) +==40444== by 0x12500BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40444== by 0x11D7C822: ??? +==40444== by 0x11D7C96F: ??? +==40444== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40444== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40444== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40444== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40444== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40444== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40444== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40444== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40444== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40444== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40444== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40444== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40444== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40444== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40444== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) +==40444== +==40444== Open file descriptor 116: +==40444== +==40444== +==40444== Open file descriptor 113: +==40444== +==40444== +==40444== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt +==40444== +==40444== +==40444== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40444== +==40444== +==40444== +==40444== HEAP SUMMARY: +==40444== in use at exit: 618,462 bytes in 8,240 blocks +==40444== total heap usage: 53,904 allocs, 45,664 frees, 1,338,962,971 bytes allocated +==40444== +==40444== LEAK SUMMARY: +==40444== definitely lost: 0 bytes in 0 blocks +==40444== indirectly lost: 0 bytes in 0 blocks +==40444== possibly lost: 0 bytes in 0 blocks +==40444== still reachable: 136 bytes in 4 blocks +==40444== suppressed: 618,326 bytes in 8,236 blocks +==40444== Reachable blocks (those to which a pointer was found) are not shown. +==40444== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40444== +==40444== For lists of detected and suppressed errors, rerun with: -s +==40444== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestVertexBasedCellPopulation_valgrind.txt b/log-files/2024-10-14_17-51-53/TestVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..c064dd093 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26124== Memcheck, a memory error detector +==26124== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26124== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26124== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26124== Parent PID: 23966 +==26124== +==26124== +==26124== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26124== Open file descriptor 12: +==26124== at 0x10CFA07D: pipe (pipe.c:29) +==26124== by 0x196BC07D: ??? +==26124== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26124== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26124== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26124== by 0xF292D38: PetscInitialize (pinit.c:924) +==26124== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26124== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26124== by 0x3F7529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26124== by 0x3EC0B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26124== by 0x3F20D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26124== by 0x3F1F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26124== by 0x3F260B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26124== by 0x3EA4D5: main (TestVertexBasedCellPopulation.cpp:19) +==26124== +==26124== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26124== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==26124== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26124== by 0xF13E822: ??? +==26124== by 0xF13E96F: ??? +==26124== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26124== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26124== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26124== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26124== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26124== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26124== by 0xF292D38: PetscInitialize (pinit.c:924) +==26124== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26124== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26124== by 0x3F7529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26124== by 0x3EC0B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26124== by 0x3F20D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26124== by 0x3F1F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26124== by 0x3F260B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26124== by 0x3EA4D5: main (TestVertexBasedCellPopulation.cpp:19) +==26124== +==26124== Open file descriptor 116: +==26124== +==26124== +==26124== Open file descriptor 113: +==26124== +==26124== +==26124== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulation_valgrind.txt +==26124== +==26124== +==26124== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26124== +==26124== +==26124== +==26124== HEAP SUMMARY: +==26124== in use at exit: 618,366 bytes in 8,239 blocks +==26124== total heap usage: 171,091 allocs, 162,852 frees, 1,350,452,161 bytes allocated +==26124== +==26124== LEAK SUMMARY: +==26124== definitely lost: 0 bytes in 0 blocks +==26124== indirectly lost: 0 bytes in 0 blocks +==26124== possibly lost: 0 bytes in 0 blocks +==26124== still reachable: 56 bytes in 3 blocks +==26124== suppressed: 618,310 bytes in 8,236 blocks +==26124== Reachable blocks (those to which a pointer was found) are not shown. +==26124== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26124== +==26124== For lists of detected and suppressed errors, rerun with: -s +==26124== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestVertexBasedDivisionRules_valgrind.txt b/log-files/2024-10-14_17-51-53/TestVertexBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..68226130e --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestVertexBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==26125== Memcheck, a memory error detector +==26125== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26125== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26125== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVertexBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==26125== Parent PID: 23966 +==26125== +==26125== +==26125== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26125== Open file descriptor 12: +==26125== at 0x10DE107D: pipe (pipe.c:29) +==26125== by 0x196BC07D: ??? +==26125== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26125== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26125== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26125== by 0xF292D38: PetscInitialize (pinit.c:924) +==26125== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26125== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26125== by 0x147723: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26125== by 0x14201D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26125== by 0x144D0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26125== by 0x144BAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26125== by 0x145241: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26125== by 0x140445: main (TestVertexBasedDivisionRules.cpp:19) +==26125== +==26125== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26125== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==26125== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26125== by 0xF13E822: ??? +==26125== by 0xF13E96F: ??? +==26125== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26125== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26125== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26125== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26125== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26125== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26125== by 0xF292D38: PetscInitialize (pinit.c:924) +==26125== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26125== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26125== by 0x147723: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26125== by 0x14201D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26125== by 0x144D0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26125== by 0x144BAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26125== by 0x145241: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26125== by 0x140445: main (TestVertexBasedDivisionRules.cpp:19) +==26125== +==26125== Open file descriptor 116: +==26125== +==26125== +==26125== Open file descriptor 113: +==26125== +==26125== +==26125== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedDivisionRules_valgrind.txt +==26125== +==26125== +==26125== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26125== +==26125== +==26125== +==26125== HEAP SUMMARY: +==26125== in use at exit: 618,366 bytes in 8,239 blocks +==26125== total heap usage: 54,155 allocs, 45,916 frees, 1,339,151,012 bytes allocated +==26125== +==26125== LEAK SUMMARY: +==26125== definitely lost: 0 bytes in 0 blocks +==26125== indirectly lost: 0 bytes in 0 blocks +==26125== possibly lost: 0 bytes in 0 blocks +==26125== still reachable: 56 bytes in 3 blocks +==26125== suppressed: 618,310 bytes in 8,236 blocks +==26125== Reachable blocks (those to which a pointer was found) are not shown. +==26125== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26125== +==26125== For lists of detected and suppressed errors, rerun with: -s +==26125== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestVertexCryptBoundaryForce_valgrind.txt b/log-files/2024-10-14_17-51-53/TestVertexCryptBoundaryForce_valgrind.txt new file mode 100644 index 000000000..e548c76bc --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestVertexCryptBoundaryForce_valgrind.txt @@ -0,0 +1,73 @@ +==40339== Memcheck, a memory error detector +==40339== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40339== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40339== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info +==40339== Parent PID: 23966 +==40339== +==40339== +==40339== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40339== Open file descriptor 12: +==40339== at 0x110C107D: pipe (pipe.c:29) +==40339== by 0x1B37D07D: ??? +==40339== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40339== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40339== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40339== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40339== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40339== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40339== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40339== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40339== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40339== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40339== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40339== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) +==40339== +==40339== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40339== at 0x110C5A1C: __open_nocancel (open64_nocancel.c:39) +==40339== by 0x11049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40339== by 0x109FE822: ??? +==40339== by 0x109FE96F: ??? +==40339== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40339== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40339== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40339== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40339== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40339== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40339== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40339== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40339== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40339== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40339== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40339== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40339== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40339== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40339== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) +==40339== +==40339== Open file descriptor 116: +==40339== +==40339== +==40339== Open file descriptor 113: +==40339== +==40339== +==40339== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexCryptBoundaryForce_valgrind.txt +==40339== +==40339== +==40339== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40339== +==40339== +==40339== +==40339== HEAP SUMMARY: +==40339== in use at exit: 618,382 bytes in 8,239 blocks +==40339== total heap usage: 56,514 allocs, 48,275 frees, 1,339,181,362 bytes allocated +==40339== +==40339== LEAK SUMMARY: +==40339== definitely lost: 0 bytes in 0 blocks +==40339== indirectly lost: 0 bytes in 0 blocks +==40339== possibly lost: 0 bytes in 0 blocks +==40339== still reachable: 56 bytes in 3 blocks +==40339== suppressed: 618,326 bytes in 8,236 blocks +==40339== Reachable blocks (those to which a pointer was found) are not shown. +==40339== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40339== +==40339== For lists of detected and suppressed errors, rerun with: -s +==40339== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestVertexElement_valgrind.txt b/log-files/2024-10-14_17-51-53/TestVertexElement_valgrind.txt new file mode 100644 index 000000000..1fa445531 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestVertexElement_valgrind.txt @@ -0,0 +1,73 @@ +==24738== Memcheck, a memory error detector +==24738== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24738== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24738== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexElement -malloc_debug -malloc_dump -memory_info +==24738== Parent PID: 23966 +==24738== +==24738== +==24738== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24738== Open file descriptor 12: +==24738== at 0x69FE07D: pipe (pipe.c:29) +==24738== by 0x100D407D: ??? +==24738== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24738== by 0x804A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24738== by 0x7FE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24738== by 0x6CDAD38: PetscInitialize (pinit.c:924) +==24738== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24738== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24738== by 0x11E098: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24738== by 0x119413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24738== by 0x11C02C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24738== by 0x11BF27: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24738== by 0x11C53B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24738== by 0x117C15: main (TestVertexElement.cpp:18) +==24738== +==24738== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24738== at 0x6A02A1C: __open_nocancel (open64_nocancel.c:39) +==24738== by 0x6986BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24738== by 0x6597822: ??? +==24738== by 0x659796F: ??? +==24738== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24738== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24738== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24738== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24738== by 0x804A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24738== by 0x7FE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24738== by 0x6CDAD38: PetscInitialize (pinit.c:924) +==24738== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24738== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24738== by 0x11E098: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24738== by 0x119413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24738== by 0x11C02C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24738== by 0x11BF27: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24738== by 0x11C53B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24738== by 0x117C15: main (TestVertexElement.cpp:18) +==24738== +==24738== Open file descriptor 116: +==24738== +==24738== +==24738== Open file descriptor 113: +==24738== +==24738== +==24738== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexElement_valgrind.txt +==24738== +==24738== +==24738== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24738== +==24738== +==24738== +==24738== HEAP SUMMARY: +==24738== in use at exit: 618,238 bytes in 8,238 blocks +==24738== total heap usage: 47,568 allocs, 39,330 frees, 1,338,396,558 bytes allocated +==24738== +==24738== LEAK SUMMARY: +==24738== definitely lost: 0 bytes in 0 blocks +==24738== indirectly lost: 0 bytes in 0 blocks +==24738== possibly lost: 0 bytes in 0 blocks +==24738== still reachable: 24 bytes in 2 blocks +==24738== suppressed: 618,214 bytes in 8,236 blocks +==24738== Reachable blocks (those to which a pointer was found) are not shown. +==24738== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24738== +==24738== For lists of detected and suppressed errors, rerun with: -s +==24738== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-10-14_17-51-53/TestVertexMeshReader_valgrind.txt b/log-files/2024-10-14_17-51-53/TestVertexMeshReader_valgrind.txt new file mode 100644 index 000000000..8b2557ce1 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestVertexMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24752== Memcheck, a memory error detector +==24752== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24752== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24752== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMeshReader -malloc_debug -malloc_dump -memory_info +==24752== Parent PID: 23966 +==24752== +==24752== +==24752== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24752== Open file descriptor 12: +==24752== at 0x691707D: pipe (pipe.c:29) +==24752== by 0x100D407D: ??? +==24752== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24752== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24752== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24752== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24752== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24752== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24752== by 0x1205C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24752== by 0x11B52D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24752== by 0x11E602: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24752== by 0x11E4A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24752== by 0x11EB39: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24752== by 0x119955: main (TestVertexMeshReader.cpp:19) +==24752== +==24752== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24752== at 0x691BA1C: __open_nocancel (open64_nocancel.c:39) +==24752== by 0x689FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24752== by 0x6597822: ??? +==24752== by 0x659796F: ??? +==24752== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24752== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24752== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24752== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24752== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24752== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24752== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24752== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24752== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24752== by 0x1205C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24752== by 0x11B52D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24752== by 0x11E602: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24752== by 0x11E4A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24752== by 0x11EB39: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24752== by 0x119955: main (TestVertexMeshReader.cpp:19) +==24752== +==24752== Open file descriptor 116: +==24752== +==24752== +==24752== Open file descriptor 113: +==24752== +==24752== +==24752== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMeshReader_valgrind.txt +==24752== +==24752== +==24752== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24752== +==24752== +==24752== +==24752== HEAP SUMMARY: +==24752== in use at exit: 618,238 bytes in 8,238 blocks +==24752== total heap usage: 47,844 allocs, 39,606 frees, 1,338,788,019 bytes allocated +==24752== +==24752== LEAK SUMMARY: +==24752== definitely lost: 0 bytes in 0 blocks +==24752== indirectly lost: 0 bytes in 0 blocks +==24752== possibly lost: 0 bytes in 0 blocks +==24752== still reachable: 24 bytes in 2 blocks +==24752== suppressed: 618,214 bytes in 8,236 blocks +==24752== Reachable blocks (those to which a pointer was found) are not shown. +==24752== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24752== +==24752== For lists of detected and suppressed errors, rerun with: -s +==24752== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestVertexMeshWriter_valgrind.txt b/log-files/2024-10-14_17-51-53/TestVertexMeshWriter_valgrind.txt new file mode 100644 index 000000000..6d86c8e7e --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestVertexMeshWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24753== Memcheck, a memory error detector +==24753== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24753== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24753== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMeshWriter -malloc_debug -malloc_dump -memory_info +==24753== Parent PID: 23966 +==24753== +==24753== +==24753== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24753== Open file descriptor 12: +==24753== at 0x81F807D: pipe (pipe.c:29) +==24753== by 0x100D407D: ??? +==24753== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24753== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24753== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24753== by 0x6686D38: PetscInitialize (pinit.c:924) +==24753== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24753== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24753== by 0x12CC41: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24753== by 0x1260AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24753== by 0x128CC8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24753== by 0x128B68: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24753== by 0x1291FF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24753== by 0x1244D5: main (TestVertexMeshWriter.cpp:19) +==24753== +==24753== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24753== at 0x81FCA1C: __open_nocancel (open64_nocancel.c:39) +==24753== by 0x8180BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24753== by 0x7915822: ??? +==24753== by 0x791596F: ??? +==24753== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24753== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24753== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24753== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24753== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24753== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24753== by 0x6686D38: PetscInitialize (pinit.c:924) +==24753== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24753== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24753== by 0x12CC41: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24753== by 0x1260AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24753== by 0x128CC8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24753== by 0x128B68: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24753== by 0x1291FF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24753== by 0x1244D5: main (TestVertexMeshWriter.cpp:19) +==24753== +==24753== Open file descriptor 116: +==24753== +==24753== +==24753== Open file descriptor 113: +==24753== +==24753== +==24753== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMeshWriter_valgrind.txt +==24753== +==24753== +==24753== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24753== +==24753== +==24753== +==24753== HEAP SUMMARY: +==24753== in use at exit: 618,238 bytes in 8,238 blocks +==24753== total heap usage: 63,666 allocs, 55,428 frees, 1,341,880,946 bytes allocated +==24753== +==24753== LEAK SUMMARY: +==24753== definitely lost: 0 bytes in 0 blocks +==24753== indirectly lost: 0 bytes in 0 blocks +==24753== possibly lost: 0 bytes in 0 blocks +==24753== still reachable: 24 bytes in 2 blocks +==24753== suppressed: 618,214 bytes in 8,236 blocks +==24753== Reachable blocks (those to which a pointer was found) are not shown. +==24753== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24753== +==24753== For lists of detected and suppressed errors, rerun with: -s +==24753== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestVertexMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestVertexMesh_valgrind.txt new file mode 100644 index 000000000..a093cfce9 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24739== Memcheck, a memory error detector +==24739== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24739== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24739== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMesh -malloc_debug -malloc_dump -memory_info +==24739== Parent PID: 23966 +==24739== +==24739== +==24739== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24739== Open file descriptor 12: +==24739== at 0x823C07D: pipe (pipe.c:29) +==24739== by 0x100D407D: ??? +==24739== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24739== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24739== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24739== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24739== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24739== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24739== by 0x14375F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24739== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24739== by 0x1413AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24739== by 0x14124C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24739== by 0x1418E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24739== by 0x13BF25: main (TestVertexMesh.cpp:19) +==24739== +==24739== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24739== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24739== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24739== by 0x6597822: ??? +==24739== by 0x659796F: ??? +==24739== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24739== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24739== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24739== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24739== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24739== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24739== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24739== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24739== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24739== by 0x14375F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24739== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24739== by 0x1413AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24739== by 0x14124C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24739== by 0x1418E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24739== by 0x13BF25: main (TestVertexMesh.cpp:19) +==24739== +==24739== Open file descriptor 116: +==24739== +==24739== +==24739== Open file descriptor 113: +==24739== +==24739== +==24739== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMesh_valgrind.txt +==24739== +==24739== +==24739== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24739== +==24739== +==24739== +==24739== HEAP SUMMARY: +==24739== in use at exit: 620,790 bytes in 8,239 blocks +==24739== total heap usage: 97,174 allocs, 88,935 frees, 1,348,104,167 bytes allocated +==24739== +==24739== LEAK SUMMARY: +==24739== definitely lost: 0 bytes in 0 blocks +==24739== indirectly lost: 0 bytes in 0 blocks +==24739== possibly lost: 0 bytes in 0 blocks +==24739== still reachable: 2,576 bytes in 3 blocks +==24739== suppressed: 618,214 bytes in 8,236 blocks +==24739== Reachable blocks (those to which a pointer was found) are not shown. +==24739== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24739== +==24739== For lists of detected and suppressed errors, rerun with: -s +==24739== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestVisualizingWithParaviewTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestVisualizingWithParaviewTutorial_valgrind.txt new file mode 100644 index 000000000..073f3b95f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestVisualizingWithParaviewTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40166== Memcheck, a memory error detector +==40166== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40166== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40166== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVisualizingWithParaviewTutorial -malloc_debug -malloc_dump -memory_info +==40166== Parent PID: 23966 +==40166== +==40166== +==40166== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40166== Open file descriptor 12: +==40166== at 0x10CB807D: pipe (pipe.c:29) +==40166== by 0x196BC07D: ??? +==40166== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40166== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40166== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40166== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40166== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40166== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40166== by 0x124111: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40166== by 0x11F773: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40166== by 0x121C86: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40166== by 0x121B81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40166== by 0x122195: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40166== by 0x11DF75: main (TestVisualizingWithParaviewTutorial.cpp:18) +==40166== +==40166== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40166== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==40166== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40166== by 0x104BC822: ??? +==40166== by 0x104BC96F: ??? +==40166== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40166== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40166== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40166== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40166== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40166== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40166== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40166== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40166== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40166== by 0x124111: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40166== by 0x11F773: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40166== by 0x121C86: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40166== by 0x121B81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40166== by 0x122195: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40166== by 0x11DF75: main (TestVisualizingWithParaviewTutorial.cpp:18) +==40166== +==40166== Open file descriptor 116: +==40166== +==40166== +==40166== Open file descriptor 113: +==40166== +==40166== +==40166== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVisualizingWithParaviewTutorial_valgrind.txt +==40166== +==40166== +==40166== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40166== +==40166== +==40166== +==40166== HEAP SUMMARY: +==40166== in use at exit: 618,295 bytes in 8,235 blocks +==40166== total heap usage: 11,749,883 allocs, 11,741,648 frees, 2,654,492,393 bytes allocated +==40166== +==40166== LEAK SUMMARY: +==40166== definitely lost: 0 bytes in 0 blocks +==40166== indirectly lost: 0 bytes in 0 blocks +==40166== possibly lost: 0 bytes in 0 blocks +==40166== still reachable: 56 bytes in 3 blocks +==40166== suppressed: 618,239 bytes in 8,232 blocks +==40166== Reachable blocks (those to which a pointer was found) are not shown. +==40166== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40166== +==40166== For lists of detected and suppressed errors, rerun with: -s +==40166== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt b/log-files/2024-10-14_17-51-53/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt new file mode 100644 index 000000000..cc3b8454d --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt @@ -0,0 +1,73 @@ +==43460== Memcheck, a memory error detector +==43460== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43460== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43460== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestVoltageInterpolaterOntoMechanicsMesh -malloc_debug -malloc_dump -memory_info +==43460== Parent PID: 23966 +==43460== +==43460== +==43460== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43460== Open file descriptor 12: +==43460== at 0xB90A07D: pipe (pipe.c:29) +==43460== by 0x1433707D: ??? +==43460== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43460== by 0xBC85418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43460== by 0xBC1ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43460== by 0x9F9CD38: PetscInitialize (pinit.c:924) +==43460== by 0x9E731D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43460== by 0x9E73227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43460== by 0x11D9D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43460== by 0x119393: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43460== by 0x11B94C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43460== by 0x11B847: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43460== by 0x11BE5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43460== by 0x117B95: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) +==43460== +==43460== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43460== at 0xB90EA1C: __open_nocancel (open64_nocancel.c:39) +==43460== by 0xB892BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43460== by 0xB22B822: ??? +==43460== by 0xB22B96F: ??? +==43460== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43460== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43460== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43460== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43460== by 0xBC85418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43460== by 0xBC1ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43460== by 0x9F9CD38: PetscInitialize (pinit.c:924) +==43460== by 0x9E731D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43460== by 0x9E73227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43460== by 0x11D9D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43460== by 0x119393: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43460== by 0x11B94C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43460== by 0x11B847: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43460== by 0x11BE5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43460== by 0x117B95: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) +==43460== +==43460== Open file descriptor 116: +==43460== +==43460== +==43460== Open file descriptor 113: +==43460== +==43460== +==43460== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt +==43460== +==43460== +==43460== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43460== +==43460== +==43460== +==43460== HEAP SUMMARY: +==43460== in use at exit: 618,830 bytes in 8,248 blocks +==43460== total heap usage: 544,545 allocs, 536,297 frees, 1,522,646,864 bytes allocated +==43460== +==43460== LEAK SUMMARY: +==43460== definitely lost: 0 bytes in 0 blocks +==43460== indirectly lost: 0 bytes in 0 blocks +==43460== possibly lost: 0 bytes in 0 blocks +==43460== still reachable: 24 bytes in 2 blocks +==43460== suppressed: 618,806 bytes in 8,246 blocks +==43460== Reachable blocks (those to which a pointer was found) are not shown. +==43460== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43460== +==43460== For lists of detected and suppressed errors, rerun with: -s +==43460== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 38) diff --git a/log-files/2024-10-14_17-51-53/TestVolumeTrackingModifier_valgrind.txt b/log-files/2024-10-14_17-51-53/TestVolumeTrackingModifier_valgrind.txt new file mode 100644 index 000000000..1216e5422 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestVolumeTrackingModifier_valgrind.txt @@ -0,0 +1,73 @@ +==39558== Memcheck, a memory error detector +==39558== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39558== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39558== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVolumeTrackingModifier -malloc_debug -malloc_dump -memory_info +==39558== Parent PID: 23966 +==39558== +==39558== +==39558== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39558== Open file descriptor 12: +==39558== at 0xF84307D: pipe (pipe.c:29) +==39558== by 0x196BC07D: ??? +==39558== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39558== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39558== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39558== by 0x1012FD38: PetscInitialize (pinit.c:924) +==39558== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39558== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39558== by 0x20235E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39558== by 0x1FA77F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39558== by 0x1FDF12: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39558== by 0x1FDE0D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39558== by 0x1FE421: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39558== by 0x1F8F75: main (TestVolumeTrackingModifier.cpp:18) +==39558== +==39558== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39558== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==39558== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39558== by 0xF13E822: ??? +==39558== by 0xF13E96F: ??? +==39558== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39558== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39558== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39558== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39558== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39558== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39558== by 0x1012FD38: PetscInitialize (pinit.c:924) +==39558== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39558== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39558== by 0x20235E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39558== by 0x1FA77F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39558== by 0x1FDF12: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39558== by 0x1FDE0D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39558== by 0x1FE421: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39558== by 0x1F8F75: main (TestVolumeTrackingModifier.cpp:18) +==39558== +==39558== Open file descriptor 116: +==39558== +==39558== +==39558== Open file descriptor 113: +==39558== +==39558== +==39558== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVolumeTrackingModifier_valgrind.txt +==39558== +==39558== +==39558== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39558== +==39558== +==39558== +==39558== HEAP SUMMARY: +==39558== in use at exit: 618,311 bytes in 8,236 blocks +==39558== total heap usage: 11,559,353 allocs, 11,551,117 frees, 3,065,465,221 bytes allocated +==39558== +==39558== LEAK SUMMARY: +==39558== definitely lost: 0 bytes in 0 blocks +==39558== indirectly lost: 0 bytes in 0 blocks +==39558== possibly lost: 0 bytes in 0 blocks +==39558== still reachable: 72 bytes in 4 blocks +==39558== suppressed: 618,239 bytes in 8,232 blocks +==39558== Reachable blocks (those to which a pointer was found) are not shown. +==39558== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39558== +==39558== For lists of detected and suppressed errors, rerun with: -s +==39558== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/TestVoronoiVertexMeshGenerator_valgrind.txt b/log-files/2024-10-14_17-51-53/TestVoronoiVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..3bb1060ce --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestVoronoiVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24765== Memcheck, a memory error detector +==24765== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24765== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24765== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVoronoiVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24765== Parent PID: 23966 +==24765== +==24765== +==24765== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24765== Open file descriptor 12: +==24765== at 0x6D4307D: pipe (pipe.c:29) +==24765== by 0x100D407D: ??? +==24765== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24765== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24765== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24765== by 0x701FD38: PetscInitialize (pinit.c:924) +==24765== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24765== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24765== by 0x1216D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24765== by 0x11C6AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24765== by 0x11F25A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24765== by 0x11F0FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24765== by 0x11F791: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24765== by 0x11AAD5: main (TestVoronoiVertexMeshGenerator.cpp:19) +==24765== +==24765== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24765== at 0x6D47A1C: __open_nocancel (open64_nocancel.c:39) +==24765== by 0x6CCBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24765== by 0x6597822: ??? +==24765== by 0x659796F: ??? +==24765== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24765== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24765== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24765== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24765== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24765== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24765== by 0x701FD38: PetscInitialize (pinit.c:924) +==24765== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24765== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24765== by 0x1216D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24765== by 0x11C6AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24765== by 0x11F25A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24765== by 0x11F0FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24765== by 0x11F791: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24765== by 0x11AAD5: main (TestVoronoiVertexMeshGenerator.cpp:19) +==24765== +==24765== Open file descriptor 116: +==24765== +==24765== +==24765== Open file descriptor 113: +==24765== +==24765== +==24765== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVoronoiVertexMeshGenerator_valgrind.txt +==24765== +==24765== +==24765== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24765== +==24765== +==24765== +==24765== HEAP SUMMARY: +==24765== in use at exit: 620,719 bytes in 8,235 blocks +==24765== total heap usage: 446,958 allocs, 438,723 frees, 1,381,744,372 bytes allocated +==24765== +==24765== LEAK SUMMARY: +==24765== definitely lost: 0 bytes in 0 blocks +==24765== indirectly lost: 0 bytes in 0 blocks +==24765== possibly lost: 0 bytes in 0 blocks +==24765== still reachable: 2,576 bytes in 3 blocks +==24765== suppressed: 618,143 bytes in 8,232 blocks +==24765== Reachable blocks (those to which a pointer was found) are not shown. +==24765== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24765== +==24765== For lists of detected and suppressed errors, rerun with: -s +==24765== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-10-14_17-51-53/TestVtkMeshReader_valgrind.txt b/log-files/2024-10-14_17-51-53/TestVtkMeshReader_valgrind.txt new file mode 100644 index 000000000..23a765882 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestVtkMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24611== Memcheck, a memory error detector +==24611== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24611== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24611== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVtkMeshReader -malloc_debug -malloc_dump -memory_info +==24611== Parent PID: 23966 +==24611== +==24611== +==24611== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24611== Open file descriptor 12: +==24611== at 0x6D4307D: pipe (pipe.c:29) +==24611== by 0x100D407D: ??? +==24611== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24611== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24611== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24611== by 0x701FD38: PetscInitialize (pinit.c:924) +==24611== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24611== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24611== by 0x12F262: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24611== by 0x12A36D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24611== by 0x12D1AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24611== by 0x12D04E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24611== by 0x12D6E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24611== by 0x128795: main (TestVtkMeshReader.cpp:19) +==24611== +==24611== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24611== at 0x6D47A1C: __open_nocancel (open64_nocancel.c:39) +==24611== by 0x6CCBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24611== by 0x6597822: ??? +==24611== by 0x659796F: ??? +==24611== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24611== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24611== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24611== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24611== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24611== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24611== by 0x701FD38: PetscInitialize (pinit.c:924) +==24611== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24611== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24611== by 0x12F262: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24611== by 0x12A36D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24611== by 0x12D1AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24611== by 0x12D04E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24611== by 0x12D6E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24611== by 0x128795: main (TestVtkMeshReader.cpp:19) +==24611== +==24611== Open file descriptor 116: +==24611== +==24611== +==24611== Open file descriptor 113: +==24611== +==24611== +==24611== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVtkMeshReader_valgrind.txt +==24611== +==24611== +==24611== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24611== +==24611== +==24611== +==24611== HEAP SUMMARY: +==24611== in use at exit: 618,238 bytes in 8,238 blocks +==24611== total heap usage: 163,470 allocs, 155,232 frees, 1,348,927,496 bytes allocated +==24611== +==24611== LEAK SUMMARY: +==24611== definitely lost: 0 bytes in 0 blocks +==24611== indirectly lost: 0 bytes in 0 blocks +==24611== possibly lost: 0 bytes in 0 blocks +==24611== still reachable: 24 bytes in 2 blocks +==24611== suppressed: 618,214 bytes in 8,236 blocks +==24611== Reachable blocks (those to which a pointer was found) are not shown. +==24611== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24611== +==24611== For lists of detected and suppressed errors, rerun with: -s +==24611== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt b/log-files/2024-10-14_17-51-53/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt new file mode 100644 index 000000000..f26f56d35 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt @@ -0,0 +1,73 @@ +==25291== Memcheck, a memory error detector +==25291== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25291== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25291== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestVtkNonlinearElasticitySolutionWriter -malloc_debug -malloc_dump -memory_info +==25291== Parent PID: 23966 +==25291== +==25291== +==25291== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25291== Open file descriptor 12: +==25291== at 0x82D207D: pipe (pipe.c:29) +==25291== by 0x106E707D: ??? +==25291== by 0xBFF44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25291== by 0x88AC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25291== by 0x8845D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25291== by 0x6897D38: PetscInitialize (pinit.c:924) +==25291== by 0x676E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25291== by 0x676E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25291== by 0x132248: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25291== by 0x12D1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25291== by 0x1302BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25291== by 0x13015C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25291== by 0x1307F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25291== by 0x12B615: main (TestVtkNonlinearElasticitySolutionWriter.cpp:19) +==25291== +==25291== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25291== at 0x82D6A1C: __open_nocancel (open64_nocancel.c:39) +==25291== by 0x825ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25291== by 0x7B26822: ??? +==25291== by 0x7B2696F: ??? +==25291== by 0xC0996DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25291== by 0xC099938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25291== by 0xC04F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25291== by 0xBFF42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25291== by 0x88AC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25291== by 0x8845D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25291== by 0x6897D38: PetscInitialize (pinit.c:924) +==25291== by 0x676E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25291== by 0x676E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25291== by 0x132248: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25291== by 0x12D1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25291== by 0x1302BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25291== by 0x13015C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25291== by 0x1307F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25291== by 0x12B615: main (TestVtkNonlinearElasticitySolutionWriter.cpp:19) +==25291== +==25291== Open file descriptor 116: +==25291== +==25291== +==25291== Open file descriptor 113: +==25291== +==25291== +==25291== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt +==25291== +==25291== +==25291== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25291== +==25291== +==25291== +==25291== HEAP SUMMARY: +==25291== in use at exit: 618,286 bytes in 8,238 blocks +==25291== total heap usage: 419,049 allocs, 410,811 frees, 1,414,783,622 bytes allocated +==25291== +==25291== LEAK SUMMARY: +==25291== definitely lost: 0 bytes in 0 blocks +==25291== indirectly lost: 0 bytes in 0 blocks +==25291== possibly lost: 0 bytes in 0 blocks +==25291== still reachable: 24 bytes in 2 blocks +==25291== suppressed: 618,262 bytes in 8,236 blocks +==25291== Reachable blocks (those to which a pointer was found) are not shown. +==25291== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25291== +==25291== For lists of detected and suppressed errors, rerun with: -s +==25291== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestWarnings_valgrind.txt b/log-files/2024-10-14_17-51-53/TestWarnings_valgrind.txt new file mode 100644 index 000000000..2cd719777 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestWarnings_valgrind.txt @@ -0,0 +1,73 @@ +==24214== Memcheck, a memory error detector +==24214== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24214== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24214== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestWarnings -malloc_debug -malloc_dump -memory_info +==24214== Parent PID: 23966 +==24214== +==24214== +==24214== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24214== Open file descriptor 12: +==24214== at 0x616907D: pipe (pipe.c:29) +==24214== by 0xAEAD07D: ??? +==24214== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24214== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24214== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24214== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24214== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24214== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24214== by 0x114FFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24214== by 0x1106CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24214== by 0x11308E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24214== by 0x112F2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24214== by 0x1135C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24214== by 0x10EAF5: main (TestWarnings.cpp:19) +==24214== +==24214== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24214== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24214== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24214== by 0x5CB2822: ??? +==24214== by 0x5CB296F: ??? +==24214== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24214== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24214== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24214== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24214== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24214== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24214== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24214== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24214== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24214== by 0x114FFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24214== by 0x1106CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24214== by 0x11308E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24214== by 0x112F2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24214== by 0x1135C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24214== by 0x10EAF5: main (TestWarnings.cpp:19) +==24214== +==24214== Open file descriptor 116: +==24214== +==24214== +==24214== Open file descriptor 113: +==24214== +==24214== +==24214== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWarnings_valgrind.txt +==24214== +==24214== +==24214== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24214== +==24214== +==24214== +==24214== HEAP SUMMARY: +==24214== in use at exit: 617,870 bytes in 8,238 blocks +==24214== total heap usage: 45,669 allocs, 37,431 frees, 1,338,293,037 bytes allocated +==24214== +==24214== LEAK SUMMARY: +==24214== definitely lost: 0 bytes in 0 blocks +==24214== indirectly lost: 0 bytes in 0 blocks +==24214== possibly lost: 0 bytes in 0 blocks +==24214== still reachable: 24 bytes in 2 blocks +==24214== suppressed: 617,846 bytes in 8,236 blocks +==24214== Reachable blocks (those to which a pointer was found) are not shown. +==24214== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24214== +==24214== For lists of detected and suppressed errors, rerun with: -s +==24214== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-10-14_17-51-53/TestWntCellCycleOdeSystem_valgrind.txt b/log-files/2024-10-14_17-51-53/TestWntCellCycleOdeSystem_valgrind.txt new file mode 100644 index 000000000..f0ac85bd2 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestWntCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==40399== Memcheck, a memory error detector +==40399== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40399== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40399== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==40399== Parent PID: 23966 +==40399== +==40399== +==40399== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40399== Open file descriptor 12: +==40399== at 0x1085407D: pipe (pipe.c:29) +==40399== by 0x1B37D07D: ??? +==40399== by 0x155194CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40399== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40399== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40399== by 0xF131D38: PetscInitialize (pinit.c:924) +==40399== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40399== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40399== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40399== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40399== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40399== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40399== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40399== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) +==40399== +==40399== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40399== at 0x10858A1C: __open_nocancel (open64_nocancel.c:39) +==40399== by 0x107DCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40399== by 0xEFDD822: ??? +==40399== by 0xEFDD96F: ??? +==40399== by 0x155BE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40399== by 0x155BE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40399== by 0x15574922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40399== by 0x155192DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40399== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40399== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40399== by 0xF131D38: PetscInitialize (pinit.c:924) +==40399== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40399== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40399== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40399== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40399== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40399== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40399== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40399== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) +==40399== +==40399== Open file descriptor 116: +==40399== +==40399== +==40399== Open file descriptor 113: +==40399== +==40399== +==40399== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntCellCycleOdeSystem_valgrind.txt +==40399== +==40399== +==40399== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40399== +==40399== +==40399== +==40399== HEAP SUMMARY: +==40399== in use at exit: 618,350 bytes in 8,238 blocks +==40399== total heap usage: 185,586 allocs, 177,348 frees, 1,419,924,387 bytes allocated +==40399== +==40399== LEAK SUMMARY: +==40399== definitely lost: 0 bytes in 0 blocks +==40399== indirectly lost: 0 bytes in 0 blocks +==40399== possibly lost: 0 bytes in 0 blocks +==40399== still reachable: 24 bytes in 2 blocks +==40399== suppressed: 618,326 bytes in 8,236 blocks +==40399== Reachable blocks (those to which a pointer was found) are not shown. +==40399== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40399== +==40399== For lists of detected and suppressed errors, rerun with: -s +==40399== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestWntConcentration_valgrind.txt b/log-files/2024-10-14_17-51-53/TestWntConcentration_valgrind.txt new file mode 100644 index 000000000..563d32141 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestWntConcentration_valgrind.txt @@ -0,0 +1,73 @@ +==40321== Memcheck, a memory error detector +==40321== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40321== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40321== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntConcentration -malloc_debug -malloc_dump -memory_info +==40321== Parent PID: 23966 +==40321== +==40321== +==40321== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40321== Open file descriptor 12: +==40321== at 0x126A107D: pipe (pipe.c:29) +==40321== by 0x1B37E07D: ??? +==40321== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40321== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40321== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40321== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40321== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40321== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40321== by 0x1449B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40321== by 0x13F409: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40321== by 0x14221A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40321== by 0x1420BA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40321== by 0x142751: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40321== by 0x13D825: main (TestWntConcentration.cpp:19) +==40321== +==40321== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40321== at 0x126A5A1C: __open_nocancel (open64_nocancel.c:39) +==40321== by 0x12629BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40321== by 0x109FE822: ??? +==40321== by 0x109FE96F: ??? +==40321== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40321== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40321== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40321== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40321== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40321== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40321== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40321== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40321== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40321== by 0x1449B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40321== by 0x13F409: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40321== by 0x14221A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40321== by 0x1420BA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40321== by 0x142751: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40321== by 0x13D825: main (TestWntConcentration.cpp:19) +==40321== +==40321== Open file descriptor 116: +==40321== +==40321== +==40321== Open file descriptor 113: +==40321== +==40321== +==40321== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntConcentration_valgrind.txt +==40321== +==40321== +==40321== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40321== +==40321== +==40321== +==40321== HEAP SUMMARY: +==40321== in use at exit: 618,462 bytes in 8,240 blocks +==40321== total heap usage: 56,679 allocs, 48,439 frees, 1,340,183,383 bytes allocated +==40321== +==40321== LEAK SUMMARY: +==40321== definitely lost: 0 bytes in 0 blocks +==40321== indirectly lost: 0 bytes in 0 blocks +==40321== possibly lost: 0 bytes in 0 blocks +==40321== still reachable: 136 bytes in 4 blocks +==40321== suppressed: 618,326 bytes in 8,236 blocks +==40321== Reachable blocks (those to which a pointer was found) are not shown. +==40321== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40321== +==40321== For lists of detected and suppressed errors, rerun with: -s +==40321== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-10-14_17-51-53/TestWritingPdeSolversTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestWritingPdeSolversTutorial_valgrind.txt new file mode 100644 index 000000000..6f3869d8c --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestWritingPdeSolversTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==25094== Memcheck, a memory error detector +==25094== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25094== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25094== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestWritingPdeSolversTutorial -malloc_debug -malloc_dump -memory_info +==25094== Parent PID: 23966 +==25094== +==25094== +==25094== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25094== Open file descriptor 12: +==25094== at 0x856207D: pipe (pipe.c:29) +==25094== by 0x104E607D: ??? +==25094== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25094== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25094== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25094== by 0x6B27D38: PetscInitialize (pinit.c:924) +==25094== by 0x69FE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25094== by 0x69FE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25094== by 0x14C16C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25094== by 0x147113: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25094== by 0x149DC4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25094== by 0x149CBF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25094== by 0x14A2D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25094== by 0x145915: main (TestWritingPdeSolversTutorial.cpp:18) +==25094== +==25094== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25094== at 0x8566A1C: __open_nocancel (open64_nocancel.c:39) +==25094== by 0x84EABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25094== by 0x7DB6822: ??? +==25094== by 0x7DB696F: ??? +==25094== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25094== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25094== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25094== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25094== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25094== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25094== by 0x6B27D38: PetscInitialize (pinit.c:924) +==25094== by 0x69FE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25094== by 0x69FE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25094== by 0x14C16C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25094== by 0x147113: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25094== by 0x149DC4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25094== by 0x149CBF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25094== by 0x14A2D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25094== by 0x145915: main (TestWritingPdeSolversTutorial.cpp:18) +==25094== +==25094== Open file descriptor 116: +==25094== +==25094== +==25094== Open file descriptor 113: +==25094== +==25094== +==25094== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingPdeSolversTutorial_valgrind.txt +==25094== +==25094== +==25094== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25094== +==25094== +==25094== +==25094== HEAP SUMMARY: +==25094== in use at exit: 618,679 bytes in 8,244 blocks +==25094== total heap usage: 1,131,261 allocs, 1,123,017 frees, 1,457,327,791 bytes allocated +==25094== +==25094== LEAK SUMMARY: +==25094== definitely lost: 0 bytes in 0 blocks +==25094== indirectly lost: 0 bytes in 0 blocks +==25094== possibly lost: 0 bytes in 0 blocks +==25094== still reachable: 24 bytes in 2 blocks +==25094== suppressed: 618,655 bytes in 8,242 blocks +==25094== Reachable blocks (those to which a pointer was found) are not shown. +==25094== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25094== +==25094== For lists of detected and suppressed errors, rerun with: -s +==25094== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 31) diff --git a/log-files/2024-10-14_17-51-53/TestWritingPdeSolversTwoTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestWritingPdeSolversTwoTutorial_valgrind.txt new file mode 100644 index 000000000..e4771f0b6 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestWritingPdeSolversTwoTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==25113== Memcheck, a memory error detector +==25113== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25113== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25113== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestWritingPdeSolversTwoTutorial -malloc_debug -malloc_dump -memory_info +==25113== Parent PID: 23966 +==25113== +==25113== +==25113== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25113== Open file descriptor 12: +==25113== at 0x856207D: pipe (pipe.c:29) +==25113== by 0x104E607D: ??? +==25113== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25113== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25113== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25113== by 0x6B27D38: PetscInitialize (pinit.c:924) +==25113== by 0x69FE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25113== by 0x69FE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25113== by 0x13DDFA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25113== by 0x138DF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25113== by 0x13B99A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25113== by 0x13B895: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25113== by 0x13BEA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25113== by 0x1375F5: main (TestWritingPdeSolversTwoTutorial.cpp:18) +==25113== +==25113== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25113== at 0x8566A1C: __open_nocancel (open64_nocancel.c:39) +==25113== by 0x84EABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25113== by 0x7DB6822: ??? +==25113== by 0x7DB696F: ??? +==25113== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25113== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25113== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25113== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25113== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25113== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25113== by 0x6B27D38: PetscInitialize (pinit.c:924) +==25113== by 0x69FE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25113== by 0x69FE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25113== by 0x13DDFA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25113== by 0x138DF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25113== by 0x13B99A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25113== by 0x13B895: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25113== by 0x13BEA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25113== by 0x1375F5: main (TestWritingPdeSolversTwoTutorial.cpp:18) +==25113== +==25113== Open file descriptor 116: +==25113== +==25113== +==25113== Open file descriptor 113: +==25113== +==25113== +==25113== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingPdeSolversTwoTutorial_valgrind.txt +==25113== +==25113== +==25113== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25113== +==25113== +==25113== +==25113== HEAP SUMMARY: +==25113== in use at exit: 618,750 bytes in 8,248 blocks +==25113== total heap usage: 128,429 allocs, 120,181 frees, 1,367,378,741 bytes allocated +==25113== +==25113== LEAK SUMMARY: +==25113== definitely lost: 0 bytes in 0 blocks +==25113== indirectly lost: 0 bytes in 0 blocks +==25113== possibly lost: 0 bytes in 0 blocks +==25113== still reachable: 24 bytes in 2 blocks +==25113== suppressed: 618,726 bytes in 8,246 blocks +==25113== Reachable blocks (those to which a pointer was found) are not shown. +==25113== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25113== +==25113== For lists of detected and suppressed errors, rerun with: -s +==25113== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 35) diff --git a/log-files/2024-10-14_17-51-53/TestWritingTestsTutorial_valgrind.txt b/log-files/2024-10-14_17-51-53/TestWritingTestsTutorial_valgrind.txt new file mode 100644 index 000000000..e0187b913 --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestWritingTestsTutorial_valgrind.txt @@ -0,0 +1,36 @@ +==24215== Memcheck, a memory error detector +==24215== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24215== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24215== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestWritingTestsTutorial -malloc_debug -malloc_dump -memory_info +==24215== Parent PID: 23966 +==24215== +==24215== +==24215== FILE DESCRIPTORS: 7 open (3 std) at exit. +==24215== Open file descriptor 116: +==24215== +==24215== +==24215== Open file descriptor 113: +==24215== +==24215== +==24215== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingTestsTutorial_valgrind.txt +==24215== +==24215== +==24215== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24215== +==24215== +==24215== +==24215== HEAP SUMMARY: +==24215== in use at exit: 24 bytes in 2 blocks +==24215== total heap usage: 3,071 allocs, 3,069 frees, 350,873 bytes allocated +==24215== +==24215== LEAK SUMMARY: +==24215== definitely lost: 0 bytes in 0 blocks +==24215== indirectly lost: 0 bytes in 0 blocks +==24215== possibly lost: 0 bytes in 0 blocks +==24215== still reachable: 24 bytes in 2 blocks +==24215== suppressed: 0 bytes in 0 blocks +==24215== Reachable blocks (those to which a pointer was found) are not shown. +==24215== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24215== +==24215== For lists of detected and suppressed errors, rerun with: -s +==24215== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-10-14_17-51-53/TestXmlMeshWriters_valgrind.txt b/log-files/2024-10-14_17-51-53/TestXmlMeshWriters_valgrind.txt new file mode 100644 index 000000000..f1122277e --- /dev/null +++ b/log-files/2024-10-14_17-51-53/TestXmlMeshWriters_valgrind.txt @@ -0,0 +1,73 @@ +==24787== Memcheck, a memory error detector +==24787== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24787== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24787== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestXmlMeshWriters -malloc_debug -malloc_dump -memory_info +==24787== Parent PID: 23966 +==24787== +==24787== +==24787== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24787== Open file descriptor 12: +==24787== at 0x709707D: pipe (pipe.c:29) +==24787== by 0x100D507D: ??? +==24787== by 0xBCF34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24787== by 0x86E3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24787== by 0x867CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24787== by 0x7373D38: PetscInitialize (pinit.c:924) +==24787== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24787== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24787== by 0x141D14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24787== by 0x13CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24787== by 0x13FA20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24787== by 0x13F8C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24787== by 0x13FF57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24787== by 0x13B075: main (TestXmlMeshWriters.cpp:19) +==24787== +==24787== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24787== at 0x709BA1C: __open_nocancel (open64_nocancel.c:39) +==24787== by 0x701FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24787== by 0x6597822: ??? +==24787== by 0x659796F: ??? +==24787== by 0xBD986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24787== by 0xBD98938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24787== by 0xBD4E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24787== by 0xBCF32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24787== by 0x86E3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24787== by 0x867CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24787== by 0x7373D38: PetscInitialize (pinit.c:924) +==24787== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24787== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24787== by 0x141D14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24787== by 0x13CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24787== by 0x13FA20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24787== by 0x13F8C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24787== by 0x13FF57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24787== by 0x13B075: main (TestXmlMeshWriters.cpp:19) +==24787== +==24787== Open file descriptor 116: +==24787== +==24787== +==24787== Open file descriptor 113: +==24787== +==24787== +==24787== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestXmlMeshWriters_valgrind.txt +==24787== +==24787== +==24787== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24787== +==24787== +==24787== +==24787== HEAP SUMMARY: +==24787== in use at exit: 618,238 bytes in 8,238 blocks +==24787== total heap usage: 457,863 allocs, 449,625 frees, 1,403,083,581 bytes allocated +==24787== +==24787== LEAK SUMMARY: +==24787== definitely lost: 0 bytes in 0 blocks +==24787== indirectly lost: 0 bytes in 0 blocks +==24787== possibly lost: 0 bytes in 0 blocks +==24787== still reachable: 24 bytes in 2 blocks +==24787== suppressed: 618,214 bytes in 8,236 blocks +==24787== Reachable blocks (those to which a pointer was found) are not shown. +==24787== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24787== +==24787== For lists of detected and suppressed errors, rerun with: -s +==24787== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 67 from 35) diff --git a/log-files/2024-10-14_17-51-53/Test_valgrind.txt b/log-files/2024-10-14_17-51-53/Test_valgrind.txt new file mode 100644 index 000000000..e2a302a6f --- /dev/null +++ b/log-files/2024-10-14_17-51-53/Test_valgrind.txt @@ -0,0 +1,73 @@ +==42623== Memcheck, a memory error detector +==42623== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42623== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42623== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCodegen -malloc_debug -malloc_dump -memory_info +==42623== Parent PID: 23966 +==42623== +==42623== +==42623== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42623== Open file descriptor 12: +==42623== at 0x9E0407D: pipe (pipe.c:29) +==42623== by 0x1433707D: ??? +==42623== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42623== by 0x9950418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42623== by 0x98E9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42623== by 0x85E0D38: PetscInitialize (pinit.c:924) +==42623== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42623== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42623== by 0x135779: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42623== by 0x12FB0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42623== by 0x132D44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42623== by 0x132BE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42623== by 0x13327B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42623== by 0x12ADA5: main (Test.cpp:19) +==42623== +==42623== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42623== at 0x9E08A1C: __open_nocancel (open64_nocancel.c:39) +==42623== by 0x9D8CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42623== by 0x848C822: ??? +==42623== by 0x848C96F: ??? +==42623== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42623== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42623== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42623== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42623== by 0x9950418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42623== by 0x98E9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42623== by 0x85E0D38: PetscInitialize (pinit.c:924) +==42623== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42623== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42623== by 0x135779: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42623== by 0x12FB0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42623== by 0x132D44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42623== by 0x132BE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42623== by 0x13327B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42623== by 0x12ADA5: main (Test.cpp:19) +==42623== +==42623== Open file descriptor 116: +==42623== +==42623== +==42623== Open file descriptor 113: +==42623== +==42623== +==42623== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test_valgrind.txt +==42623== +==42623== +==42623== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42623== +==42623== +==42623== +==42623== HEAP SUMMARY: +==42623== in use at exit: 623,622 bytes in 8,246 blocks +==42623== total heap usage: 941,055 allocs, 932,809 frees, 2,144,095,952 bytes allocated +==42623== +==42623== LEAK SUMMARY: +==42623== definitely lost: 0 bytes in 0 blocks +==42623== indirectly lost: 0 bytes in 0 blocks +==42623== possibly lost: 0 bytes in 0 blocks +==42623== still reachable: 5,367 bytes in 14 blocks +==42623== suppressed: 618,255 bytes in 8,232 blocks +==42623== Reachable blocks (those to which a pointer was found) are not shown. +==42623== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42623== +==42623== For lists of detected and suppressed errors, rerun with: -s +==42623== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-10-14_17-51-53/index.html b/log-files/2024-10-14_17-51-53/index.html new file mode 100644 index 000000000..08c38a2cd --- /dev/null +++ b/log-files/2024-10-14_17-51-53/index.html @@ -0,0 +1,425 @@ + + + + + + Chaste valgrind memtest output + + +

Memtest output for commit ab5d2810d400af3b4d1dbfaf23771259d85696b5 on branch 273-pychaste-merge

+
+

Summary of 398 tests:

+

green: 398

+

orange: 0

+

red: 0

+
+

Test1D3DLinearEllipticSolver: No leaks found (test output)

+

Test1dMonodomainShannonCvodeBenchmarks: No leaks found (test output)

+

Test2dVertexBasedSimulationWithSrnModels: No leaks found (test output)

+

Test: No leaks found (test output)

+

TestAbstractAnalyticJacobian: No leaks found (test output)

+

TestAbstractContinuumMechanicsAssembler: No leaks found (test output)

+

TestAbstractContractionCellFactory: No leaks found (test output)

+

TestAbstractCvodeSystem: No leaks found (test output)

+

TestAbstractFeCableIntegralAssembler: No leaks found (test output)

+

TestAbstractFeSurfaceIntegralAssembler: No leaks found (test output)

+

TestAbstractFeVolumeIntegralAssembler: No leaks found (test output)

+

TestAbstractFunctionalCalculator: No leaks found (test output)

+

TestAbstractIvpOdeSolver: No leaks found (test output)

+

TestAbstractOdeSystem: No leaks found (test output)

+

TestAbstractPurkinjeCellFactory: No leaks found (test output)

+

TestAcinarUnitModels: No leaks found (test output)

+

TestAirwayBranch: No leaks found (test output)

+

TestAirwayGeneration: No leaks found (test output)

+

TestAirwayGenerator: No leaks found (test output)

+

TestAirwayPropertiesCalculator: No leaks found (test output)

+

TestAirwayRemesher: No leaks found (test output)

+

TestAirwayTreeWalker: No leaks found (test output)

+

TestAirwayWallModels: No leaks found (test output)

+

TestAlarcon2004OxygenBasedCellCycleOdeSystem: No leaks found (test output)

+

TestArchiveCell: No leaks found (test output)

+

TestArchiveFormat: No leaks found (test output)

+

TestArchiving: No leaks found (test output)

+

TestArchivingExtendedBidomain: No leaks found (test output)

+

TestArchivingHelperClasses: No leaks found (test output)

+

TestBackwardEulerIvpOdeSolver: No leaks found (test output)

+

TestBenchmarkPreconditionersForMeshIndependence: No leaks found (test output)

+

TestBidomainDistributedMesh: No leaks found (test output)

+

TestBidomainProblem: No leaks found (test output)

+

TestBidomainTissue: No leaks found (test output)

+

TestBidomainWithBathProblem: No leaks found (test output)

+

TestBidomainWithSvi: No leaks found (test output)

+

TestBoundaryConditionsContainer: No leaks found (test output)

+

TestBuskeForces: No leaks found (test output)

+

TestCaBasedCellPopulation: No leaks found (test output)

+

TestCaBasedDivisionRules: No leaks found (test output)

+

TestCaUpdateRules: No leaks found (test output)

+

TestCableTestProblem: No leaks found (test output)

+

TestCardiacElectroMechanicsFurtherFunctionality: No leaks found (test output)

+

TestCardiacElectroMechanicsProblem: No leaks found (test output)

+

TestCardiacSimulation: No leaks found (test output)

+

TestCardiacSimulationArchiver: No leaks found (test output)

+

TestCell: No leaks found (test output)

+

TestCellBasedCellProperties: No leaks found (test output)

+

TestCellBasedEllipticPdeSolver: No leaks found (test output)

+

TestCellBasedEllipticPdes: No leaks found (test output)

+

TestCellBasedEventHandler: No leaks found (test output)

+

TestCellBasedParabolicPdes: No leaks found (test output)

+

TestCellBetaCateninWriter: No leaks found (test output)

+

TestCellCycleModelOdeSolver: No leaks found (test output)

+

TestCellDataMaps: No leaks found (test output)

+

TestCellForCrypt: No leaks found (test output)

+

TestCellKillers: No leaks found (test output)

+

TestCellMutationStates: No leaks found (test output)

+

TestCellPopulationBoundaryConditions: No leaks found (test output)

+

TestCellPopulationCountWriters: No leaks found (test output)

+

TestCellPopulationEventWriters: No leaks found (test output)

+

TestCellPopulationWriters: No leaks found (test output)

+

TestCellProliferativeTypes: No leaks found (test output)

+

TestCellProperties: No leaks found (test output)

+

TestCellPropertyCollection: No leaks found (test output)

+

TestCellPropertyRegistry: No leaks found (test output)

+

TestCellSrn: No leaks found (test output)

+

TestCellWriters: No leaks found (test output)

+

TestCellsGenerator: No leaks found (test output)

+

TestCellwiseDataGradient: No leaks found (test output)

+

TestCentreBasedDivisionRules: No leaks found (test output)

+

TestChasteBuildInfo: No leaks found (test output)

+

TestChastePoint: No leaks found (test output)

+

TestChasteRegions: No leaks found (test output)

+

TestChebyshevIteration: No leaks found (test output)

+

TestCheckpointing: No leaks found (test output)

+

TestCitations: No leaks found (test output)

+

TestCodegenPresent: No leaks found (test output)

+

TestColumnDataReaderWriter: No leaks found (test output)

+

TestCombinedOdeSystem: No leaks found (test output)

+

TestCommandLineArguments: No leaks found (test output)

+

TestCommandLineArgumentsTutorial: No leaks found (test output)

+

TestCompressibleNonlinearElasticitySolver: No leaks found (test output)

+

TestConductivityTensors: No leaks found (test output)

+

TestConstBoundaryCondition: No leaks found (test output)

+

TestContinuumMechanicsNeumannBcsAssembler: No leaks found (test output)

+

TestContractionModels: No leaks found (test output)

+

TestConvergenceTester: No leaks found (test output)

+

TestCoupledCableTestProblem: No leaks found (test output)

+

TestCreatingAndUsingANewCellBasedSimulationModifierTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellCycleModelTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellKillerTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellMutationStateTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellPropertyTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewForceTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewSrnModelTutorial: No leaks found (test output)

+

TestCreatingAndUsingNewCellBasedWritersTutorial: No leaks found (test output)

+

TestCryptCellsGenerator: No leaks found (test output)

+

TestCryptDivisionRules: No leaks found (test output)

+

TestCryptProjectionForce: No leaks found (test output)

+

TestCryptProjectionStatistics: No leaks found (test output)

+

TestCryptSimulation1d: No leaks found (test output)

+

TestCryptSimulation2dWithMeshBasedCellPopulation: No leaks found (test output)

+

TestCryptSimulation2dWithVertexBasedCellPopulation: No leaks found (test output)

+

TestCryptSimulationBoundaryCondition: No leaks found (test output)

+

TestCryptStatistics: No leaks found (test output)

+

TestCvodeAdaptor: No leaks found (test output)

+

TestCvodeCells: No leaks found (test output)

+

TestCvodeCellsWithDataClamp: No leaks found (test output)

+

TestCvodeWithJacobian: No leaks found (test output)

+

TestCwd: No leaks found (test output)

+

TestCylindrical2dMesh: No leaks found (test output)

+

TestCylindrical2dNodesOnlyMesh: No leaks found (test output)

+

TestCylindrical2dVertexMesh: No leaks found (test output)

+

TestCylindricalHoneycombMeshGenerator: No leaks found (test output)

+

TestCylindricalHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestDebug: No leaks found (test output)

+

TestDeltaNotchModifier: No leaks found (test output)

+

TestDeltaNotchOdeSystem: No leaks found (test output)

+

TestDiscreteSystemForceCalculator: No leaks found (test output)

+

TestDistanceMapCalculator: No leaks found (test output)

+

TestDistributedBoxCollection: No leaks found (test output)

+

TestDistributedQuadraticMesh: No leaks found (test output)

+

TestDistributedTetrahedralMesh: No leaks found (test output)

+

TestDistributedVector: No leaks found (test output)

+

TestDivisionBiasTrackingModifier: No leaks found (test output)

+

TestDynamicVentilation: No leaks found (test output)

+

TestDynamicallyLoadedCellModels: No leaks found (test output)

+

TestEdge: No leaks found (test output)

+

TestEdgeInteriorSrn: No leaks found (test output)

+

TestElectroMechanicsExactSolution: No leaks found (test output)

+

TestElectroMechanicsProblemDefinition: No leaks found (test output)

+

TestElectrodes: No leaks found (test output)

+

TestElement: No leaks found (test output)

+

TestElementAttributes: No leaks found (test output)

+

TestEllipticBoxDomainPdeModifier: No leaks found (test output)

+

TestEllipticGrowingDomainPdeModifier: No leaks found (test output)

+

TestException: No leaks found (test output)

+

TestExecutableSupport: No leaks found (test output)

+

TestExplicitCardiacMechanicsSolver: No leaks found (test output)

+

TestExtendedBidomainProblem: No leaks found (test output)

+

TestExtendedBidomainTissue: No leaks found (test output)

+

TestExtendedVsBidomainProblem: No leaks found (test output)

+

TestExtrinsicPullModifier: No leaks found (test output)

+

TestFemlabMeshReader: No leaks found (test output)

+

TestFibreReader: No leaks found (test output)

+

TestFibreReaderAbilityExtendedBidomainProblem: No leaks found (test output)

+

TestFibreWriter: No leaks found (test output)

+

TestFileComparison: No leaks found (test output)

+

TestFileFinder: No leaks found (test output)

+

TestFineCoarseMeshPair: No leaks found (test output)

+

TestFloatingPointDivisionByZero: No leaks found (test output)

+

TestFloatingPointDivisionByZeroPetsc: No leaks found (test output)

+

TestFluidSource: No leaks found (test output)

+

TestForces: No leaks found (test output)

+

TestFourthOrderTensor: No leaks found (test output)

+

TestGIModifiedModels: No leaks found (test output)

+

TestGRL1IvpOdeSolver: No leaks found (test output)

+

TestGRL2IvpOdeSolver: No leaks found (test output)

+

TestGaussianQuadratureRule: No leaks found (test output)

+

TestGeneralizedRushLarsen: No leaks found (test output)

+

TestGenericEventHandler: No leaks found (test output)

+

TestGmshMeshReader: No leaks found (test output)

+

TestGoldbeter1991OdeSystem: No leaks found (test output)

+

TestHdf5Converters: No leaks found (test output)

+

TestHdf5DataReader: No leaks found (test output)

+

TestHdf5DataWriter: No leaks found (test output)

+

TestHdf5ToVisualizerConverters: No leaks found (test output)

+

TestHeartConfig: No leaks found (test output)

+

TestHeartEventHandler: No leaks found (test output)

+

TestHeartFileFinder: No leaks found (test output)

+

TestHeartGeometryInformation: No leaks found (test output)

+

TestHeartRegionCodes: No leaks found (test output)

+

TestHelloWorld: No leaks found (test output)

+

TestHeterogeneousConductivities: No leaks found (test output)

+

TestHeun2IvpOdeSolver: No leaks found (test output)

+

TestHodgkinHuxleySquidAxon1952OriginalOdeSystem: No leaks found (test output)

+

TestHoneycombMeshGenerator: No leaks found (test output)

+

TestHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestImmersedBoundary2dArrays: No leaks found (test output)

+

TestImmersedBoundaryCellPopulation: No leaks found (test output)

+

TestImmersedBoundaryDivisionRules: No leaks found (test output)

+

TestImmersedBoundaryElement: No leaks found (test output)

+

TestImmersedBoundaryFftInterface: No leaks found (test output)

+

TestImmersedBoundaryForces: No leaks found (test output)

+

TestImmersedBoundaryHoneycombMeshGenerator: No leaks found (test output)

+

TestImmersedBoundaryMesh: No leaks found (test output)

+

TestImmersedBoundaryMeshReader: No leaks found (test output)

+

TestImmersedBoundaryMeshWriter: No leaks found (test output)

+

TestImmersedBoundaryPalisadeMeshGenerator: No leaks found (test output)

+

TestImmersedBoundarySimulationModifier: No leaks found (test output)

+

TestImmersedBoundarySvgWriter: No leaks found (test output)

+

TestImpedancePostProcessor: No leaks found (test output)

+

TestImplicitCardiacMechanicsSolver: No leaks found (test output)

+

TestIncompressibleNonlinearElasticitySolver: No leaks found (test output)

+

TestIonicModels: No leaks found (test output)

+

TestIonicModelsWithSacs: No leaks found (test output)

+

TestLinearBasisFunction: No leaks found (test output)

+

TestLinearParabolicPdeSystemForCoupledOdeSystem: No leaks found (test output)

+

TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver: No leaks found (test output)

+

TestLinearSpringWithVariableSpringConstantsForce: No leaks found (test output)

+

TestLinearSystem: No leaks found (test output)

+

TestLobePropertiesCalculator: No leaks found (test output)

+

TestLogFile: No leaks found (test output)

+

TestMajorAirwaysCentreLinesCleaner: No leaks found (test output)

+

TestMaterialLaws: No leaks found (test output)

+

TestMathsCustomFunctions: No leaks found (test output)

+

TestMatrixVentilationProblem: No leaks found (test output)

+

TestMemfemMeshReader: No leaks found (test output)

+

TestMeshBasedCellPopulation: No leaks found (test output)

+

TestMeshBasedCellPopulationWithGhostNodes: No leaks found (test output)

+

TestMeshUtilityFunctions: No leaks found (test output)

+

TestMeshWriters: No leaks found (test output)

+

TestMirams2010WntOdeSystem: No leaks found (test output)

+

TestMixedDimensionMesh: No leaks found (test output)

+

TestMockEulerIvpOdeSolver: No leaks found (test output)

+

TestModernCppFeatures: No leaks found (test output)

+

TestModifiers: No leaks found (test output)

+

TestMonodomainConductionVelocity: No leaks found (test output)

+

TestMonodomainFitzHughNagumo: No leaks found (test output)

+

TestMonodomainMassLumping: No leaks found (test output)

+

TestMonodomainProblem: No leaks found (test output)

+

TestMonodomainPurkinjeAssemblersAndSolver: No leaks found (test output)

+

TestMonodomainPurkinjeProblem: No leaks found (test output)

+

TestMonodomainStiffnessMatrixAssembler: No leaks found (test output)

+

TestMonodomainTissue: No leaks found (test output)

+

TestMonodomainWithSvi: No leaks found (test output)

+

TestMonodomainWithTimeAdaptivity: No leaks found (test output)

+

TestMoreMechanics: No leaks found (test output)

+

TestMultiLobeAirwayGenerator: No leaks found (test output)

+

TestMutableMesh: No leaks found (test output)

+

TestMutableMeshRemesh: No leaks found (test output)

+

TestMutableVertexMesh: No leaks found (test output)

+

TestMutableVertexMeshOperationsWithPopulationSrn: No leaks found (test output)

+

TestMutableVertexMeshReMesh: No leaks found (test output)

+

TestMutableVertexMeshRosetteMethods: No leaks found (test output)

+

TestNeumannStimulus: No leaks found (test output)

+

TestNhsModelWithBackwardSolver: No leaks found (test output)

+

TestNode: No leaks found (test output)

+

TestNodeAttributes: No leaks found (test output)

+

TestNodeBasedCellPopulation: No leaks found (test output)

+

TestNodeBasedCellPopulationParallelMethods: No leaks found (test output)

+

TestNodeBasedCellPopulationWithBuskeUpdate: No leaks found (test output)

+

TestNodeBasedCellPopulationWithParticles: No leaks found (test output)

+

TestNodesOnlyMesh: No leaks found (test output)

+

TestNonCachedTetrahedralMesh: No leaks found (test output)

+

TestNonlinearElasticityTools: No leaks found (test output)

+

TestNonlinearSolvers: No leaks found (test output)

+

TestNormallyDistributedTargetAreaModifier: No leaks found (test output)

+

TestNumericFileComparison: No leaks found (test output)

+

TestNumericalMethods: No leaks found (test output)

+

TestObjectCommunicator: No leaks found (test output)

+

TestObsoleteBoxCollection: No leaks found (test output)

+

TestOdeBasedCellCycleModels: No leaks found (test output)

+

TestOdeBasedCellCycleModelsForCrypt: No leaks found (test output)

+

TestOdeBasedSrnModels: No leaks found (test output)

+

TestOdeLinearSystemSolver: No leaks found (test output)

+

TestOffLatticeCryptProjectionSimulation: No leaks found (test output)

+

TestOffLatticeRandomFieldGenerator: No leaks found (test output)

+

TestOffLatticeSimulation3d: No leaks found (test output)

+

TestOffLatticeSimulation: No leaks found (test output)

+

TestOffLatticeSimulationWithBuskeForces: No leaks found (test output)

+

TestOffLatticeSimulationWithNodeBasedCellPopulation: No leaks found (test output)

+

TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d: No leaks found (test output)

+

TestOffLatticeSimulationWithPdes: No leaks found (test output)

+

TestOffLatticeSimulationWithVertexBasedCellPopulation: No leaks found (test output)

+

TestOnLatticeSimulationWithCaBasedCellPopulation: No leaks found (test output)

+

TestOnLatticeSimulationWithPdes: No leaks found (test output)

+

TestOnLatticeSimulationWithPottsBasedCellPopulation: No leaks found (test output)

+

TestOperatorSplittingMonodomainSolver: No leaks found (test output)

+

TestOutputDirectoryFifoQueue: No leaks found (test output)

+

TestOutputFileHandler: No leaks found (test output)

+

TestPCBlockDiagonal: No leaks found (test output)

+

TestPCLDUFactorisation: No leaks found (test output)

+

TestPCTwoLevelsBlockDiagonal: No leaks found (test output)

+

TestPapillaryFibreCalculator: No leaks found (test output)

+

TestParabolicBoxDomainPdeModifier: No leaks found (test output)

+

TestParabolicGrowingDomainPdeModifier: No leaks found (test output)

+

TestParallelCellsGenerator: No leaks found (test output)

+

TestParallelColumnDataReaderWriter: No leaks found (test output)

+

TestParallelWriterPerformance: No leaks found (test output)

+

TestPdeSimulationTime: No leaks found (test output)

+

TestPdeTestClasses: No leaks found (test output)

+

TestPerElementWriter: No leaks found (test output)

+

TestPeriodicNodeBasedCellPopulationParallelMethods: No leaks found (test output)

+

TestPeriodicNodesOnlyMesh: No leaks found (test output)

+

TestPetscEvents: No leaks found (test output)

+

TestPetscMatTools: No leaks found (test output)

+

TestPetscSetup: No leaks found (test output)

+

TestPetscTools2: No leaks found (test output)

+

TestPetscTools: No leaks found (test output)

+

TestPetscVecTools: No leaks found (test output)

+

TestPlaneStimulusCellFactory: No leaks found (test output)

+

TestPostProcessingWriter: No leaks found (test output)

+

TestPottsBasedCellPopulation: No leaks found (test output)

+

TestPottsBasedCryptSimulation: No leaks found (test output)

+

TestPottsElement: No leaks found (test output)

+

TestPottsMesh: No leaks found (test output)

+

TestPottsMeshGenerator: No leaks found (test output)

+

TestPottsMeshReader: No leaks found (test output)

+

TestPottsMeshWriter: No leaks found (test output)

+

TestPottsUpdateRules: No leaks found (test output)

+

TestProblemDefinitions: No leaks found (test output)

+

TestProgressReporter: No leaks found (test output)

+

TestPropagationPropertiesCalculator: No leaks found (test output)

+

TestPseudoEcgCalculator: No leaks found (test output)

+

TestQuadraticBasisFunction: No leaks found (test output)

+

TestQuadraticMesh: No leaks found (test output)

+

TestQuadraturePointsGroup: No leaks found (test output)

+

TestRKC21IvpOdeSolver: No leaks found (test output)

+

TestRandomNumberGenerator: No leaks found (test output)

+

TestReplicatableVector: No leaks found (test output)

+

TestRepresentativeImmersedBoundarySimulations: No leaks found (test output)

+

TestRestitutionStimuli: No leaks found (test output)

+

TestRungeKuttaFehlbergIvpOdeSolver: No leaks found (test output)

+

TestRunningContactInhibitionSimulationsTutorial: No leaks found (test output)

+

TestRunningCryptSimulationsWithMutationsTutorial: No leaks found (test output)

+

TestRunningDeltaNotchSimulationsTutorial: No leaks found (test output)

+

TestRunningDifferentialAdhesionSimulationsTutorial: No leaks found (test output)

+

TestRunningImmersedBoundarySimulationsTutorial: No leaks found (test output)

+

TestRunningMeshBasedCryptSimulationsTutorial: No leaks found (test output)

+

TestRunningMeshBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningNodeBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningPottsBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningTumourSpheroidSimulationsTutorial: No leaks found (test output)

+

TestRunningVertexBasedCryptSimulationsTutorial: No leaks found (test output)

+

TestRunningVertexBasedSimulationsTutorial: No leaks found (test output)

+

TestRushLarsen: No leaks found (test output)

+

TestShovingCaBasedDivisionRules: No leaks found (test output)

+

TestSimpleCellCycleModels: No leaks found (test output)

+

TestSimpleCellCycleModelsForCrypt: No leaks found (test output)

+

TestSimpleDataWriter: No leaks found (test output)

+

TestSimpleImpedanceProblem: No leaks found (test output)

+

TestSimpleLinearEllipticSolver: No leaks found (test output)

+

TestSimpleLinearParabolicSolver: No leaks found (test output)

+

TestSimpleNonlinearEllipticSolver: No leaks found (test output)

+

TestSimpleTargetAreaModifier: No leaks found (test output)

+

TestSimulationTime: No leaks found (test output)

+

TestSimulationsWithEllipticBoxDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithEllipticGrowingDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithParabolicBoxDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithParabolicGrowingDomainPdeModifier: No leaks found (test output)

+

TestSingleOdeWntCellCycleModel: No leaks found (test output)

+

TestSloughingCellKillers: No leaks found (test output)

+

TestSolveLaplacianWithQuadratics: No leaks found (test output)

+

TestSolvingCoupledPdes: No leaks found (test output)

+

TestSolvingNonlinearPdesTutorial: No leaks found (test output)

+

TestSolvingOdesTutorial: No leaks found (test output)

+

TestSolvingStiffOdeSystems: No leaks found (test output)

+

TestSpiralWaveAndPhase: No leaks found (test output)

+

TestSteadyStateRunner: No leaks found (test output)

+

TestStepSizeException: No leaks found (test output)

+

TestStimulus: No leaks found (test output)

+

TestStimulusBoundaryCondition: No leaks found (test output)

+

TestStimulusFactory: No leaks found (test output)

+

TestStokesFlowAssembler: No leaks found (test output)

+

TestStokesFlowSolver: No leaks found (test output)

+

TestStreeterFibreGenerator: No leaks found (test output)

+

TestSuperellipseGenerator: No leaks found (test output)

+

TestT2SwapCellKiller: No leaks found (test output)

+

TestTargetAreaLinearGrowthModifier: No leaks found (test output)

+

TestTetrahedralMesh: No leaks found (test output)

+

TestTimeAdaptivityController: No leaks found (test output)

+

TestTimeStepper: No leaks found (test output)

+

TestTimer: No leaks found (test output)

+

TestToroidal2dMesh: No leaks found (test output)

+

TestToroidal2dVertexMesh: No leaks found (test output)

+

TestToroidalHoneycombMeshGenerator: No leaks found (test output)

+

TestToroidalHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestTransformations: No leaks found (test output)

+

TestTrianglesMeshReader: No leaks found (test output)

+

TestTysonNovak2001OdeSystem: No leaks found (test output)

+

TestUblasCustomFunctions: No leaks found (test output)

+

TestUniformGridRandomFieldGenerator: No leaks found (test output)

+

TestVanLeeuwen2009WntSwatCellCycleOdeSystem: No leaks found (test output)

+

TestVentilationProblem: No leaks found (test output)

+

TestVertexBasedCellPopulation: No leaks found (test output)

+

TestVertexBasedCellPopulationForCrypt: No leaks found (test output)

+

TestVertexBasedDivisionRules: No leaks found (test output)

+

TestVertexCryptBoundaryForce: No leaks found (test output)

+

TestVertexElement: No leaks found (test output)

+

TestVertexMesh: No leaks found (test output)

+

TestVertexMeshReader: No leaks found (test output)

+

TestVertexMeshWriter: No leaks found (test output)

+

TestVisualizingWithParaviewTutorial: No leaks found (test output)

+

TestVoltageInterpolaterOntoMechanicsMesh: No leaks found (test output)

+

TestVolumeTrackingModifier: No leaks found (test output)

+

TestVoronoiVertexMeshGenerator: No leaks found (test output)

+

TestVtkMeshReader: No leaks found (test output)

+

TestVtkNonlinearElasticitySolutionWriter: No leaks found (test output)

+

TestWarnings: No leaks found (test output)

+

TestWntCellCycleOdeSystem: No leaks found (test output)

+

TestWntConcentration: No leaks found (test output)

+

TestWritingPdeSolversTutorial: No leaks found (test output)

+

TestWritingPdeSolversTwoTutorial: No leaks found (test output)

+

TestWritingTestsTutorial: No leaks found (test output)

+

TestXmlMeshWriters: No leaks found (test output)


+ + diff --git a/log-files/index.html b/log-files/index.html index d0feceabf..daf321559 100644 --- a/log-files/index.html +++ b/log-files/index.html @@ -15,6 +15,16 @@

Index of Valgrind Memcheck output

October 2024

+ + + + + +
+ 2024-10-14_17-51-53 + green273-pychaste-merge + ab5d2810d400af3b4d1dbfaf23771259d85696b5 +
2024-10-08_17-23-11