diff --git a/log-files/2024-09-23_05-40-48/Test1D3DLinearEllipticSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/Test1D3DLinearEllipticSolver_valgrind.txt new file mode 100644 index 000000000..b975ce20b --- /dev/null +++ b/log-files/2024-09-23_05-40-48/Test1D3DLinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25029== Memcheck, a memory error detector +==25029== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25029== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25029== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/Test1D3DLinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==25029== Parent PID: 24048 +==25029== +==25029== +==25029== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25029== Open file descriptor 12: +==25029== at 0x84E707D: pipe (pipe.c:29) +==25029== by 0x104D507D: ??? +==25029== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25029== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25029== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25029== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25029== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25029== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25029== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25029== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25029== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25029== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25029== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25029== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18) +==25029== +==25029== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25029== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25029== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25029== by 0x7D3C822: ??? +==25029== by 0x7D3C96F: ??? +==25029== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25029== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25029== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25029== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25029== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25029== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25029== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25029== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25029== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25029== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25029== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25029== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25029== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25029== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25029== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18) +==25029== +==25029== Open file descriptor 113: +==25029== +==25029== +==25029== Open file descriptor 110: +==25029== +==25029== +==25029== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1D3DLinearEllipticSolver_valgrind.txt +==25029== +==25029== +==25029== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25029== +==25029== +==25029== +==25029== HEAP SUMMARY: +==25029== in use at exit: 618,258 bytes in 8,238 blocks +==25029== total heap usage: 51,120 allocs, 42,882 frees, 1,339,258,840 bytes allocated +==25029== +==25029== LEAK SUMMARY: +==25029== definitely lost: 0 bytes in 0 blocks +==25029== indirectly lost: 0 bytes in 0 blocks +==25029== possibly lost: 0 bytes in 0 blocks +==25029== still reachable: 24 bytes in 2 blocks +==25029== suppressed: 618,234 bytes in 8,236 blocks +==25029== Reachable blocks (those to which a pointer was found) are not shown. +==25029== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25029== +==25029== For lists of detected and suppressed errors, rerun with: -s +==25029== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt b/log-files/2024-09-23_05-40-48/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt new file mode 100644 index 000000000..573043480 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt @@ -0,0 +1,73 @@ +==43471== Memcheck, a memory error detector +==43471== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43471== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43471== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/Test1dMonodomainShannonCvodeBenchmarks -malloc_debug -malloc_dump -memory_info +==43471== Parent PID: 24048 +==43471== +==43471== +==43471== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43471== Open file descriptor 12: +==43471== at 0xA7C307D: pipe (pipe.c:29) +==43471== by 0x1432407D: ??? +==43471== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43471== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43471== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43471== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==43471== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43471== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43471== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43471== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43471== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43471== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43471== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43471== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18) +==43471== +==43471== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43471== at 0xA7C7A1C: __open_nocancel (open64_nocancel.c:39) +==43471== by 0xA74BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43471== by 0xA0E5822: ??? +==43471== by 0xA0E596F: ??? +==43471== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43471== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43471== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43471== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43471== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43471== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43471== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==43471== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43471== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43471== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43471== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43471== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43471== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43471== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43471== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18) +==43471== +==43471== Open file descriptor 113: +==43471== +==43471== +==43471== Open file descriptor 110: +==43471== +==43471== +==43471== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt +==43471== +==43471== +==43471== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43471== +==43471== +==43471== +==43471== HEAP SUMMARY: +==43471== in use at exit: 618,745 bytes in 8,244 blocks +==43471== total heap usage: 319,599 allocs, 311,355 frees, 1,398,098,639 bytes allocated +==43471== +==43471== LEAK SUMMARY: +==43471== definitely lost: 0 bytes in 0 blocks +==43471== indirectly lost: 0 bytes in 0 blocks +==43471== possibly lost: 0 bytes in 0 blocks +==43471== still reachable: 24 bytes in 2 blocks +==43471== suppressed: 618,721 bytes in 8,242 blocks +==43471== Reachable blocks (those to which a pointer was found) are not shown. +==43471== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43471== +==43471== For lists of detected and suppressed errors, rerun with: -s +==43471== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 42 from 34) diff --git a/log-files/2024-09-23_05-40-48/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt b/log-files/2024-09-23_05-40-48/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt new file mode 100644 index 000000000..b2fae1c76 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt @@ -0,0 +1,73 @@ +==26285== Memcheck, a memory error detector +==26285== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26285== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26285== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info +==26285== Parent PID: 24048 +==26285== +==26285== +==26285== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26285== Open file descriptor 12: +==26285== at 0xF7F907D: pipe (pipe.c:29) +==26285== by 0x196AD07D: ??? +==26285== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26285== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26285== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26285== by 0x10127D38: PetscInitialize (pinit.c:924) +==26285== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26285== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26285== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26285== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26285== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26285== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26285== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26285== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) +==26285== +==26285== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26285== at 0xF7FDA1C: __open_nocancel (open64_nocancel.c:39) +==26285== by 0xF781BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26285== by 0xF137822: ??? +==26285== by 0xF13796F: ??? +==26285== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26285== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26285== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26285== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26285== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26285== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26285== by 0x10127D38: PetscInitialize (pinit.c:924) +==26285== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26285== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26285== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26285== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26285== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26285== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26285== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26285== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) +==26285== +==26285== Open file descriptor 113: +==26285== +==26285== +==26285== Open file descriptor 110: +==26285== +==26285== +==26285== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt +==26285== +==26285== +==26285== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26285== +==26285== +==26285== +==26285== HEAP SUMMARY: +==26285== in use at exit: 618,354 bytes in 8,239 blocks +==26285== total heap usage: 1,124,534 allocs, 1,116,295 frees, 1,415,928,137 bytes allocated +==26285== +==26285== LEAK SUMMARY: +==26285== definitely lost: 0 bytes in 0 blocks +==26285== indirectly lost: 0 bytes in 0 blocks +==26285== possibly lost: 0 bytes in 0 blocks +==26285== still reachable: 56 bytes in 3 blocks +==26285== suppressed: 618,298 bytes in 8,236 blocks +==26285== Reachable blocks (those to which a pointer was found) are not shown. +==26285== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26285== +==26285== For lists of detected and suppressed errors, rerun with: -s +==26285== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestAbstractAnalyticJacobian_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAbstractAnalyticJacobian_valgrind.txt new file mode 100644 index 000000000..de4674d81 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAbstractAnalyticJacobian_valgrind.txt @@ -0,0 +1,73 @@ +==24952== Memcheck, a memory error detector +==24952== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24952== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24952== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractAnalyticJacobian -malloc_debug -malloc_dump -memory_info +==24952== Parent PID: 24048 +==24952== +==24952== +==24952== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24952== Open file descriptor 12: +==24952== at 0x4F1007D: pipe (pipe.c:29) +==24952== by 0xB1E607D: ??? +==24952== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24952== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24952== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24952== by 0x5308D38: PetscInitialize (pinit.c:924) +==24952== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24952== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24952== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24952== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24952== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24952== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24952== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24952== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18) +==24952== +==24952== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24952== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39) +==24952== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24952== by 0x4B77822: ??? +==24952== by 0x4B7796F: ??? +==24952== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24952== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24952== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24952== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24952== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24952== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24952== by 0x5308D38: PetscInitialize (pinit.c:924) +==24952== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24952== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24952== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24952== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24952== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24952== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24952== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24952== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18) +==24952== +==24952== Open file descriptor 113: +==24952== +==24952== +==24952== Open file descriptor 110: +==24952== +==24952== +==24952== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractAnalyticJacobian_valgrind.txt +==24952== +==24952== +==24952== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24952== +==24952== +==24952== +==24952== HEAP SUMMARY: +==24952== in use at exit: 617,906 bytes in 8,238 blocks +==24952== total heap usage: 45,032 allocs, 36,794 frees, 1,338,170,200 bytes allocated +==24952== +==24952== LEAK SUMMARY: +==24952== definitely lost: 0 bytes in 0 blocks +==24952== indirectly lost: 0 bytes in 0 blocks +==24952== possibly lost: 0 bytes in 0 blocks +==24952== still reachable: 24 bytes in 2 blocks +==24952== suppressed: 617,882 bytes in 8,236 blocks +==24952== Reachable blocks (those to which a pointer was found) are not shown. +==24952== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24952== +==24952== For lists of detected and suppressed errors, rerun with: -s +==24952== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestAbstractContinuumMechanicsAssembler_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAbstractContinuumMechanicsAssembler_valgrind.txt new file mode 100644 index 000000000..68f584956 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAbstractContinuumMechanicsAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25327== Memcheck, a memory error detector +==25327== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25327== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25327== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestAbstractContinuumMechanicsAssembler -malloc_debug -malloc_dump -memory_info +==25327== Parent PID: 24048 +==25327== +==25327== +==25327== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25327== Open file descriptor 12: +==25327== at 0x84E707D: pipe (pipe.c:29) +==25327== by 0x104D507D: ??? +==25327== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25327== by 0x8B4E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25327== by 0x8AE7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25327== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25327== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25327== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25327== by 0x1507F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25327== by 0x14B24D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25327== by 0x14E462: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25327== by 0x14E302: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25327== by 0x14E999: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25327== by 0x149675: main (TestAbstractContinuumMechanicsAssembler.cpp:19) +==25327== +==25327== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25327== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25327== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25327== by 0x7D3C822: ??? +==25327== by 0x7D3C96F: ??? +==25327== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25327== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25327== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25327== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25327== by 0x8B4E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25327== by 0x8AE7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25327== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25327== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25327== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25327== by 0x1507F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25327== by 0x14B24D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25327== by 0x14E462: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25327== by 0x14E302: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25327== by 0x14E999: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25327== by 0x149675: main (TestAbstractContinuumMechanicsAssembler.cpp:19) +==25327== +==25327== Open file descriptor 113: +==25327== +==25327== +==25327== Open file descriptor 110: +==25327== +==25327== +==25327== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractContinuumMechanicsAssembler_valgrind.txt +==25327== +==25327== +==25327== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25327== +==25327== +==25327== +==25327== HEAP SUMMARY: +==25327== in use at exit: 618,258 bytes in 8,238 blocks +==25327== total heap usage: 50,431 allocs, 42,193 frees, 1,339,924,207 bytes allocated +==25327== +==25327== LEAK SUMMARY: +==25327== definitely lost: 0 bytes in 0 blocks +==25327== indirectly lost: 0 bytes in 0 blocks +==25327== possibly lost: 0 bytes in 0 blocks +==25327== still reachable: 24 bytes in 2 blocks +==25327== suppressed: 618,234 bytes in 8,236 blocks +==25327== Reachable blocks (those to which a pointer was found) are not shown. +==25327== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25327== +==25327== For lists of detected and suppressed errors, rerun with: -s +==25327== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestAbstractContractionCellFactory_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAbstractContractionCellFactory_valgrind.txt new file mode 100644 index 000000000..818f37b38 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAbstractContractionCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==43651== Memcheck, a memory error detector +==43651== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43651== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43651== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestAbstractContractionCellFactory -malloc_debug -malloc_dump -memory_info +==43651== Parent PID: 24048 +==43651== +==43651== +==43651== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43651== Open file descriptor 12: +==43651== at 0xA8D007D: pipe (pipe.c:29) +==43651== by 0x1432407D: ??? +==43651== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43651== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43651== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43651== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43651== by 0xA1B71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43651== by 0xA1B7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43651== by 0x11F78E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43651== by 0x11A553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43651== by 0x11C978: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43651== by 0x11C873: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43651== by 0x11CE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43651== by 0x118D55: main (TestAbstractContractionCellFactory.cpp:18) +==43651== +==43651== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43651== at 0xA8D4A1C: __open_nocancel (open64_nocancel.c:39) +==43651== by 0xA858BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43651== by 0xA1F2822: ??? +==43651== by 0xA1F296F: ??? +==43651== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43651== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43651== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43651== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43651== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43651== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43651== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43651== by 0xA1B71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43651== by 0xA1B7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43651== by 0x11F78E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43651== by 0x11A553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43651== by 0x11C978: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43651== by 0x11C873: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43651== by 0x11CE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43651== by 0x118D55: main (TestAbstractContractionCellFactory.cpp:18) +==43651== +==43651== Open file descriptor 113: +==43651== +==43651== +==43651== Open file descriptor 110: +==43651== +==43651== +==43651== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractContractionCellFactory_valgrind.txt +==43651== +==43651== +==43651== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43651== +==43651== +==43651== +==43651== HEAP SUMMARY: +==43651== in use at exit: 618,818 bytes in 8,248 blocks +==43651== total heap usage: 169,219 allocs, 160,971 frees, 1,363,021,914 bytes allocated +==43651== +==43651== LEAK SUMMARY: +==43651== definitely lost: 0 bytes in 0 blocks +==43651== indirectly lost: 0 bytes in 0 blocks +==43651== possibly lost: 0 bytes in 0 blocks +==43651== still reachable: 24 bytes in 2 blocks +==43651== suppressed: 618,794 bytes in 8,246 blocks +==43651== Reachable blocks (those to which a pointer was found) are not shown. +==43651== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43651== +==43651== For lists of detected and suppressed errors, rerun with: -s +==43651== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestAbstractCvodeSystem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAbstractCvodeSystem_valgrind.txt new file mode 100644 index 000000000..ccb0ea90d --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAbstractCvodeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24939== Memcheck, a memory error detector +==24939== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24939== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24939== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractCvodeSystem -malloc_debug -malloc_dump -memory_info +==24939== Parent PID: 24048 +==24939== +==24939== +==24939== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24939== Open file descriptor 12: +==24939== at 0x643E07D: pipe (pipe.c:29) +==24939== by 0xB1CA07D: ??? +==24939== by 0x8CC44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24939== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24939== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24939== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24939== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24939== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24939== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24939== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24939== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24939== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24939== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24939== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) +==24939== +==24939== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24939== at 0x6442A1C: __open_nocancel (open64_nocancel.c:39) +==24939== by 0x63C6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24939== by 0x4B77822: ??? +==24939== by 0x4B7796F: ??? +==24939== by 0x8D696DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24939== by 0x8D69938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24939== by 0x8D1F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24939== by 0x8CC42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24939== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24939== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24939== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24939== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24939== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24939== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24939== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24939== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24939== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24939== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24939== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) +==24939== +==24939== Open file descriptor 113: +==24939== +==24939== +==24939== Open file descriptor 110: +==24939== +==24939== +==24939== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractCvodeSystem_valgrind.txt +==24939== +==24939== +==24939== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24939== +==24939== +==24939== +==24939== HEAP SUMMARY: +==24939== in use at exit: 617,890 bytes in 8,238 blocks +==24939== total heap usage: 46,488 allocs, 38,250 frees, 1,338,367,071 bytes allocated +==24939== +==24939== LEAK SUMMARY: +==24939== definitely lost: 0 bytes in 0 blocks +==24939== indirectly lost: 0 bytes in 0 blocks +==24939== possibly lost: 0 bytes in 0 blocks +==24939== still reachable: 24 bytes in 2 blocks +==24939== suppressed: 617,866 bytes in 8,236 blocks +==24939== Reachable blocks (those to which a pointer was found) are not shown. +==24939== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24939== +==24939== For lists of detected and suppressed errors, rerun with: -s +==24939== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestAbstractFeCableIntegralAssembler_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAbstractFeCableIntegralAssembler_valgrind.txt new file mode 100644 index 000000000..2a536cf29 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAbstractFeCableIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25156== Memcheck, a memory error detector +==25156== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25156== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25156== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeCableIntegralAssembler -malloc_debug -malloc_dump -memory_info +==25156== Parent PID: 24048 +==25156== +==25156== +==25156== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25156== Open file descriptor 12: +==25156== at 0x84E707D: pipe (pipe.c:29) +==25156== by 0x104D507D: ??? +==25156== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25156== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25156== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25156== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25156== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25156== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25156== by 0x136062: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25156== by 0x130C2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25156== by 0x133CD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25156== by 0x133B72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25156== by 0x134209: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25156== by 0x12F055: main (TestAbstractFeCableIntegralAssembler.cpp:19) +==25156== +==25156== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25156== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25156== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25156== by 0x7D3C822: ??? +==25156== by 0x7D3C96F: ??? +==25156== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25156== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25156== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25156== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25156== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25156== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25156== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25156== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25156== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25156== by 0x136062: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25156== by 0x130C2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25156== by 0x133CD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25156== by 0x133B72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25156== by 0x134209: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25156== by 0x12F055: main (TestAbstractFeCableIntegralAssembler.cpp:19) +==25156== +==25156== Open file descriptor 113: +==25156== +==25156== +==25156== Open file descriptor 110: +==25156== +==25156== +==25156== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeCableIntegralAssembler_valgrind.txt +==25156== +==25156== +==25156== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25156== +==25156== +==25156== +==25156== HEAP SUMMARY: +==25156== in use at exit: 618,258 bytes in 8,238 blocks +==25156== total heap usage: 59,953 allocs, 51,715 frees, 1,339,372,201 bytes allocated +==25156== +==25156== LEAK SUMMARY: +==25156== definitely lost: 0 bytes in 0 blocks +==25156== indirectly lost: 0 bytes in 0 blocks +==25156== possibly lost: 0 bytes in 0 blocks +==25156== still reachable: 24 bytes in 2 blocks +==25156== suppressed: 618,234 bytes in 8,236 blocks +==25156== Reachable blocks (those to which a pointer was found) are not shown. +==25156== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25156== +==25156== For lists of detected and suppressed errors, rerun with: -s +==25156== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt new file mode 100644 index 000000000..a2bfd46af --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25170== Memcheck, a memory error detector +==25170== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25170== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25170== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeSurfaceIntegralAssembler -malloc_debug -malloc_dump -memory_info +==25170== Parent PID: 24048 +==25170== +==25170== +==25170== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25170== Open file descriptor 12: +==25170== at 0x84E707D: pipe (pipe.c:29) +==25170== by 0x104D507D: ??? +==25170== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25170== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25170== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25170== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25170== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25170== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25170== by 0x12D738: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25170== by 0x128933: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25170== by 0x12B4AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25170== by 0x12B3A5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25170== by 0x12B9B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25170== by 0x127135: main (TestAbstractFeSurfaceIntegralAssembler.cpp:18) +==25170== +==25170== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25170== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25170== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25170== by 0x7D3C822: ??? +==25170== by 0x7D3C96F: ??? +==25170== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25170== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25170== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25170== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25170== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25170== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25170== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25170== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25170== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25170== by 0x12D738: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25170== by 0x128933: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25170== by 0x12B4AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25170== by 0x12B3A5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25170== by 0x12B9B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25170== by 0x127135: main (TestAbstractFeSurfaceIntegralAssembler.cpp:18) +==25170== +==25170== Open file descriptor 113: +==25170== +==25170== +==25170== Open file descriptor 110: +==25170== +==25170== +==25170== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt +==25170== +==25170== +==25170== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25170== +==25170== +==25170== +==25170== HEAP SUMMARY: +==25170== in use at exit: 618,258 bytes in 8,238 blocks +==25170== total heap usage: 47,971 allocs, 39,733 frees, 1,338,474,392 bytes allocated +==25170== +==25170== LEAK SUMMARY: +==25170== definitely lost: 0 bytes in 0 blocks +==25170== indirectly lost: 0 bytes in 0 blocks +==25170== possibly lost: 0 bytes in 0 blocks +==25170== still reachable: 24 bytes in 2 blocks +==25170== suppressed: 618,234 bytes in 8,236 blocks +==25170== Reachable blocks (those to which a pointer was found) are not shown. +==25170== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25170== +==25170== For lists of detected and suppressed errors, rerun with: -s +==25170== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestAbstractFeVolumeIntegralAssembler_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAbstractFeVolumeIntegralAssembler_valgrind.txt new file mode 100644 index 000000000..3faf5ed11 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAbstractFeVolumeIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25176== Memcheck, a memory error detector +==25176== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25176== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25176== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeVolumeIntegralAssembler -malloc_debug -malloc_dump -memory_info +==25176== Parent PID: 24048 +==25176== +==25176== +==25176== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25176== Open file descriptor 12: +==25176== at 0x84E707D: pipe (pipe.c:29) +==25176== by 0x104D507D: ??? +==25176== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25176== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25176== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25176== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25176== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25176== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25176== by 0x15E73C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25176== by 0x15920D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25176== by 0x15C3AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25176== by 0x15C24C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25176== by 0x15C8E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25176== by 0x157635: main (TestAbstractFeVolumeIntegralAssembler.cpp:19) +==25176== +==25176== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25176== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25176== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25176== by 0x7D3C822: ??? +==25176== by 0x7D3C96F: ??? +==25176== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25176== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25176== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25176== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25176== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25176== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25176== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25176== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25176== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25176== by 0x15E73C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25176== by 0x15920D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25176== by 0x15C3AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25176== by 0x15C24C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25176== by 0x15C8E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25176== by 0x157635: main (TestAbstractFeVolumeIntegralAssembler.cpp:19) +==25176== +==25176== Open file descriptor 113: +==25176== +==25176== +==25176== Open file descriptor 110: +==25176== +==25176== +==25176== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeVolumeIntegralAssembler_valgrind.txt +==25176== +==25176== +==25176== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25176== +==25176== +==25176== +==25176== HEAP SUMMARY: +==25176== in use at exit: 618,258 bytes in 8,238 blocks +==25176== total heap usage: 57,060 allocs, 48,822 frees, 1,339,697,993 bytes allocated +==25176== +==25176== LEAK SUMMARY: +==25176== definitely lost: 0 bytes in 0 blocks +==25176== indirectly lost: 0 bytes in 0 blocks +==25176== possibly lost: 0 bytes in 0 blocks +==25176== still reachable: 24 bytes in 2 blocks +==25176== suppressed: 618,234 bytes in 8,236 blocks +==25176== Reachable blocks (those to which a pointer was found) are not shown. +==25176== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25176== +==25176== For lists of detected and suppressed errors, rerun with: -s +==25176== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestAbstractFunctionalCalculator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAbstractFunctionalCalculator_valgrind.txt new file mode 100644 index 000000000..a52865d59 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAbstractFunctionalCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==25193== Memcheck, a memory error detector +==25193== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25193== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25193== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFunctionalCalculator -malloc_debug -malloc_dump -memory_info +==25193== Parent PID: 24048 +==25193== +==25193== +==25193== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25193== Open file descriptor 12: +==25193== at 0x858F07D: pipe (pipe.c:29) +==25193== by 0x104D607D: ??? +==25193== by 0xBE164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25193== by 0x7DB0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25193== by 0x7D49D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25193== by 0x6A1DD38: PetscInitialize (pinit.c:924) +==25193== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25193== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25193== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25193== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25193== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25193== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25193== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25193== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) +==25193== +==25193== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25193== at 0x8593A1C: __open_nocancel (open64_nocancel.c:39) +==25193== by 0x8517BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25193== by 0x7CAD822: ??? +==25193== by 0x7CAD96F: ??? +==25193== by 0xBEBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25193== by 0xBEBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25193== by 0xBE71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25193== by 0xBE162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25193== by 0x7DB0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25193== by 0x7D49D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25193== by 0x6A1DD38: PetscInitialize (pinit.c:924) +==25193== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25193== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25193== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25193== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25193== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25193== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25193== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25193== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) +==25193== +==25193== Open file descriptor 113: +==25193== +==25193== +==25193== Open file descriptor 110: +==25193== +==25193== +==25193== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFunctionalCalculator_valgrind.txt +==25193== +==25193== +==25193== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25193== +==25193== +==25193== +==25193== HEAP SUMMARY: +==25193== in use at exit: 618,258 bytes in 8,238 blocks +==25193== total heap usage: 89,963 allocs, 81,725 frees, 1,340,571,523 bytes allocated +==25193== +==25193== LEAK SUMMARY: +==25193== definitely lost: 0 bytes in 0 blocks +==25193== indirectly lost: 0 bytes in 0 blocks +==25193== possibly lost: 0 bytes in 0 blocks +==25193== still reachable: 24 bytes in 2 blocks +==25193== suppressed: 618,234 bytes in 8,236 blocks +==25193== Reachable blocks (those to which a pointer was found) are not shown. +==25193== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25193== +==25193== For lists of detected and suppressed errors, rerun with: -s +==25193== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestAbstractIvpOdeSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAbstractIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..1f69a30c2 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAbstractIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24925== Memcheck, a memory error detector +==24925== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24925== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24925== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24925== Parent PID: 24048 +==24925== +==24925== +==24925== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24925== Open file descriptor 12: +==24925== at 0x503907D: pipe (pipe.c:29) +==24925== by 0xB1E607D: ??? +==24925== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24925== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24925== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24925== by 0x5308D38: PetscInitialize (pinit.c:924) +==24925== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24925== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24925== by 0x13ABB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24925== by 0x13250D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24925== by 0x13549A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24925== by 0x13533A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24925== by 0x1359D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24925== by 0x12FAD5: main (TestAbstractIvpOdeSolver.cpp:19) +==24925== +==24925== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24925== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24925== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24925== by 0x4B77822: ??? +==24925== by 0x4B7796F: ??? +==24925== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24925== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24925== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24925== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24925== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24925== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24925== by 0x5308D38: PetscInitialize (pinit.c:924) +==24925== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24925== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24925== by 0x13ABB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24925== by 0x13250D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24925== by 0x13549A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24925== by 0x13533A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24925== by 0x1359D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24925== by 0x12FAD5: main (TestAbstractIvpOdeSolver.cpp:19) +==24925== +==24925== Open file descriptor 113: +==24925== +==24925== +==24925== Open file descriptor 110: +==24925== +==24925== +==24925== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractIvpOdeSolver_valgrind.txt +==24925== +==24925== +==24925== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24925== +==24925== +==24925== +==24925== HEAP SUMMARY: +==24925== in use at exit: 617,906 bytes in 8,238 blocks +==24925== total heap usage: 138,423 allocs, 130,185 frees, 1,346,069,179 bytes allocated +==24925== +==24925== LEAK SUMMARY: +==24925== definitely lost: 0 bytes in 0 blocks +==24925== indirectly lost: 0 bytes in 0 blocks +==24925== possibly lost: 0 bytes in 0 blocks +==24925== still reachable: 24 bytes in 2 blocks +==24925== suppressed: 617,882 bytes in 8,236 blocks +==24925== Reachable blocks (those to which a pointer was found) are not shown. +==24925== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24925== +==24925== For lists of detected and suppressed errors, rerun with: -s +==24925== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestAbstractOdeSystem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAbstractOdeSystem_valgrind.txt new file mode 100644 index 000000000..41fa627ec --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAbstractOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24940== Memcheck, a memory error detector +==24940== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24940== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24940== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractOdeSystem -malloc_debug -malloc_dump -memory_info +==24940== Parent PID: 24048 +==24940== +==24940== +==24940== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24940== Open file descriptor 12: +==24940== at 0x640707D: pipe (pipe.c:29) +==24940== by 0xB1E407D: ??? +==24940== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24940== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24940== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24940== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24940== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24940== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24940== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24940== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24940== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24940== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24940== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24940== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) +==24940== +==24940== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24940== at 0x640BA1C: __open_nocancel (open64_nocancel.c:39) +==24940== by 0x638FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24940== by 0x4B77822: ??? +==24940== by 0x4B7796F: ??? +==24940== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24940== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24940== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24940== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24940== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24940== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24940== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24940== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24940== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24940== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24940== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24940== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24940== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24940== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24940== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) +==24940== +==24940== Open file descriptor 113: +==24940== +==24940== +==24940== Open file descriptor 110: +==24940== +==24940== +==24940== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractOdeSystem_valgrind.txt +==24940== +==24940== +==24940== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24940== +==24940== +==24940== +==24940== HEAP SUMMARY: +==24940== in use at exit: 617,906 bytes in 8,238 blocks +==24940== total heap usage: 45,968 allocs, 37,730 frees, 1,338,334,040 bytes allocated +==24940== +==24940== LEAK SUMMARY: +==24940== definitely lost: 0 bytes in 0 blocks +==24940== indirectly lost: 0 bytes in 0 blocks +==24940== possibly lost: 0 bytes in 0 blocks +==24940== still reachable: 24 bytes in 2 blocks +==24940== suppressed: 617,882 bytes in 8,236 blocks +==24940== Reachable blocks (those to which a pointer was found) are not shown. +==24940== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24940== +==24940== For lists of detected and suppressed errors, rerun with: -s +==24940== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestAbstractPurkinjeCellFactory_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAbstractPurkinjeCellFactory_valgrind.txt new file mode 100644 index 000000000..3f9d7d908 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAbstractPurkinjeCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==43659== Memcheck, a memory error detector +==43659== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43659== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43659== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestAbstractPurkinjeCellFactory -malloc_debug -malloc_dump -memory_info +==43659== Parent PID: 24048 +==43659== +==43659== +==43659== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43659== Open file descriptor 12: +==43659== at 0xA50C07D: pipe (pipe.c:29) +==43659== by 0x1432407D: ??? +==43659== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43659== by 0xBC07418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43659== by 0xBBA0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43659== by 0xA897D38: PetscInitialize (pinit.c:924) +==43659== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43659== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43659== by 0x11B060: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43659== by 0x11664D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43659== by 0x118D6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43659== by 0x118C0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43659== by 0x1192A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43659== by 0x114A75: main (TestAbstractPurkinjeCellFactory.cpp:19) +==43659== +==43659== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43659== at 0xA510A1C: __open_nocancel (open64_nocancel.c:39) +==43659== by 0xA494BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43659== by 0x9E30822: ??? +==43659== by 0x9E3096F: ??? +==43659== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43659== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43659== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43659== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43659== by 0xBC07418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43659== by 0xBBA0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43659== by 0xA897D38: PetscInitialize (pinit.c:924) +==43659== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43659== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43659== by 0x11B060: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43659== by 0x11664D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43659== by 0x118D6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43659== by 0x118C0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43659== by 0x1192A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43659== by 0x114A75: main (TestAbstractPurkinjeCellFactory.cpp:19) +==43659== +==43659== Open file descriptor 113: +==43659== +==43659== +==43659== Open file descriptor 110: +==43659== +==43659== +==43659== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractPurkinjeCellFactory_valgrind.txt +==43659== +==43659== +==43659== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43659== +==43659== +==43659== +==43659== HEAP SUMMARY: +==43659== in use at exit: 618,338 bytes in 8,238 blocks +==43659== total heap usage: 60,030 allocs, 51,792 frees, 1,339,347,479 bytes allocated +==43659== +==43659== LEAK SUMMARY: +==43659== definitely lost: 0 bytes in 0 blocks +==43659== indirectly lost: 0 bytes in 0 blocks +==43659== possibly lost: 0 bytes in 0 blocks +==43659== still reachable: 24 bytes in 2 blocks +==43659== suppressed: 618,314 bytes in 8,236 blocks +==43659== Reachable blocks (those to which a pointer was found) are not shown. +==43659== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43659== +==43659== For lists of detected and suppressed errors, rerun with: -s +==43659== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestAcinarUnitModels_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAcinarUnitModels_valgrind.txt new file mode 100644 index 000000000..f90cbe61d --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAcinarUnitModels_valgrind.txt @@ -0,0 +1,36 @@ +==41196== Memcheck, a memory error detector +==41196== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41196== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41196== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAcinarUnitModels -malloc_debug -malloc_dump -memory_info +==41196== Parent PID: 24048 +==41196== +==41196== +==41196== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41196== Open file descriptor 113: +==41196== +==41196== +==41196== Open file descriptor 110: +==41196== +==41196== +==41196== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAcinarUnitModels_valgrind.txt +==41196== +==41196== +==41196== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41196== +==41196== +==41196== +==41196== HEAP SUMMARY: +==41196== in use at exit: 24 bytes in 2 blocks +==41196== total heap usage: 56,753 allocs, 56,751 frees, 1,351,570 bytes allocated +==41196== +==41196== LEAK SUMMARY: +==41196== definitely lost: 0 bytes in 0 blocks +==41196== indirectly lost: 0 bytes in 0 blocks +==41196== possibly lost: 0 bytes in 0 blocks +==41196== still reachable: 24 bytes in 2 blocks +==41196== suppressed: 0 bytes in 0 blocks +==41196== Reachable blocks (those to which a pointer was found) are not shown. +==41196== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41196== +==41196== For lists of detected and suppressed errors, rerun with: -s +==41196== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-23_05-40-48/TestAirwayBranch_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAirwayBranch_valgrind.txt new file mode 100644 index 000000000..90a5ebcc1 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAirwayBranch_valgrind.txt @@ -0,0 +1,36 @@ +==41104== Memcheck, a memory error detector +==41104== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41104== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41104== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayBranch -malloc_debug -malloc_dump -memory_info +==41104== Parent PID: 24048 +==41104== +==41104== +==41104== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41104== Open file descriptor 113: +==41104== +==41104== +==41104== Open file descriptor 110: +==41104== +==41104== +==41104== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayBranch_valgrind.txt +==41104== +==41104== +==41104== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41104== +==41104== +==41104== +==41104== HEAP SUMMARY: +==41104== in use at exit: 24 bytes in 2 blocks +==41104== total heap usage: 7,276 allocs, 7,274 frees, 1,027,081 bytes allocated +==41104== +==41104== LEAK SUMMARY: +==41104== definitely lost: 0 bytes in 0 blocks +==41104== indirectly lost: 0 bytes in 0 blocks +==41104== possibly lost: 0 bytes in 0 blocks +==41104== still reachable: 24 bytes in 2 blocks +==41104== suppressed: 0 bytes in 0 blocks +==41104== Reachable blocks (those to which a pointer was found) are not shown. +==41104== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41104== +==41104== For lists of detected and suppressed errors, rerun with: -s +==41104== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-23_05-40-48/TestAirwayGeneration_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAirwayGeneration_valgrind.txt new file mode 100644 index 000000000..be21f69ec --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAirwayGeneration_valgrind.txt @@ -0,0 +1,36 @@ +==41153== Memcheck, a memory error detector +==41153== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41153== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41153== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayGeneration -malloc_debug -malloc_dump -memory_info +==41153== Parent PID: 24048 +==41153== +==41153== +==41153== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41153== Open file descriptor 113: +==41153== +==41153== +==41153== Open file descriptor 110: +==41153== +==41153== +==41153== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayGeneration_valgrind.txt +==41153== +==41153== +==41153== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41153== +==41153== +==41153== +==41153== HEAP SUMMARY: +==41153== in use at exit: 24 bytes in 2 blocks +==41153== total heap usage: 7,378 allocs, 7,376 frees, 939,188 bytes allocated +==41153== +==41153== LEAK SUMMARY: +==41153== definitely lost: 0 bytes in 0 blocks +==41153== indirectly lost: 0 bytes in 0 blocks +==41153== possibly lost: 0 bytes in 0 blocks +==41153== still reachable: 24 bytes in 2 blocks +==41153== suppressed: 0 bytes in 0 blocks +==41153== Reachable blocks (those to which a pointer was found) are not shown. +==41153== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41153== +==41153== For lists of detected and suppressed errors, rerun with: -s +==41153== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-23_05-40-48/TestAirwayGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAirwayGenerator_valgrind.txt new file mode 100644 index 000000000..4cec54995 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAirwayGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==41156== Memcheck, a memory error detector +==41156== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41156== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41156== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayGenerator -malloc_debug -malloc_dump -memory_info +==41156== Parent PID: 24048 +==41156== +==41156== +==41156== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41156== Open file descriptor 12: +==41156== at 0x6BD107D: pipe (pipe.c:29) +==41156== by 0x107A407D: ??? +==41156== by 0xBAC94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41156== by 0x5ED6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41156== by 0x5E6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41156== by 0x4B43D38: PetscInitialize (pinit.c:924) +==41156== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41156== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41156== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41156== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41156== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41156== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41156== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41156== by 0x111D35: main (TestAirwayGenerator.cpp:19) +==41156== +==41156== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41156== at 0x6BD5A1C: __open_nocancel (open64_nocancel.c:39) +==41156== by 0x6B59BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41156== by 0x5DD3822: ??? +==41156== by 0x5DD396F: ??? +==41156== by 0xBB6E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41156== by 0xBB6E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41156== by 0xBB24922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41156== by 0xBAC92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41156== by 0x5ED6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41156== by 0x5E6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41156== by 0x4B43D38: PetscInitialize (pinit.c:924) +==41156== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41156== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41156== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41156== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41156== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41156== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41156== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41156== by 0x111D35: main (TestAirwayGenerator.cpp:19) +==41156== +==41156== Open file descriptor 113: +==41156== +==41156== +==41156== Open file descriptor 110: +==41156== +==41156== +==41156== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayGenerator_valgrind.txt +==41156== +==41156== +==41156== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41156== +==41156== +==41156== +==41156== HEAP SUMMARY: +==41156== in use at exit: 618,322 bytes in 8,238 blocks +==41156== total heap usage: 627,254 allocs, 619,016 frees, 1,787,062,885 bytes allocated +==41156== +==41156== LEAK SUMMARY: +==41156== definitely lost: 0 bytes in 0 blocks +==41156== indirectly lost: 0 bytes in 0 blocks +==41156== possibly lost: 0 bytes in 0 blocks +==41156== still reachable: 24 bytes in 2 blocks +==41156== suppressed: 618,298 bytes in 8,236 blocks +==41156== Reachable blocks (those to which a pointer was found) are not shown. +==41156== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41156== +==41156== For lists of detected and suppressed errors, rerun with: -s +==41156== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestAirwayPropertiesCalculator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAirwayPropertiesCalculator_valgrind.txt new file mode 100644 index 000000000..584a32366 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAirwayPropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==41106== Memcheck, a memory error detector +==41106== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41106== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41106== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayPropertiesCalculator -malloc_debug -malloc_dump -memory_info +==41106== Parent PID: 24048 +==41106== +==41106== +==41106== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41106== Open file descriptor 113: +==41106== +==41106== +==41106== Open file descriptor 110: +==41106== +==41106== +==41106== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayPropertiesCalculator_valgrind.txt +==41106== +==41106== +==41106== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41106== +==41106== +==41106== +==41106== HEAP SUMMARY: +==41106== in use at exit: 24 bytes in 2 blocks +==41106== total heap usage: 6,941,070 allocs, 6,941,068 frees, 279,826,156 bytes allocated +==41106== +==41106== LEAK SUMMARY: +==41106== definitely lost: 0 bytes in 0 blocks +==41106== indirectly lost: 0 bytes in 0 blocks +==41106== possibly lost: 0 bytes in 0 blocks +==41106== still reachable: 24 bytes in 2 blocks +==41106== suppressed: 0 bytes in 0 blocks +==41106== Reachable blocks (those to which a pointer was found) are not shown. +==41106== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41106== +==41106== For lists of detected and suppressed errors, rerun with: -s +==41106== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-23_05-40-48/TestAirwayRemesher_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAirwayRemesher_valgrind.txt new file mode 100644 index 000000000..4c2f39ea7 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAirwayRemesher_valgrind.txt @@ -0,0 +1,73 @@ +==41170== Memcheck, a memory error detector +==41170== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41170== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41170== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayRemesher -malloc_debug -malloc_dump -memory_info +==41170== Parent PID: 24048 +==41170== +==41170== +==41170== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41170== Open file descriptor 12: +==41170== at 0x822907D: pipe (pipe.c:29) +==41170== by 0x107A407D: ??? +==41170== by 0xBFCD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41170== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41170== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41170== by 0x679ED38: PetscInitialize (pinit.c:924) +==41170== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41170== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41170== by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41170== by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41170== by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41170== by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41170== by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41170== by 0x114955: main (TestAirwayRemesher.cpp:18) +==41170== +==41170== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41170== at 0x822DA1C: __open_nocancel (open64_nocancel.c:39) +==41170== by 0x81B1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41170== by 0x7A2E822: ??? +==41170== by 0x7A2E96F: ??? +==41170== by 0xC0726DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41170== by 0xC072938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41170== by 0xC028922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41170== by 0xBFCD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41170== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41170== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41170== by 0x679ED38: PetscInitialize (pinit.c:924) +==41170== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41170== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41170== by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41170== by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41170== by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41170== by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41170== by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41170== by 0x114955: main (TestAirwayRemesher.cpp:18) +==41170== +==41170== Open file descriptor 113: +==41170== +==41170== +==41170== Open file descriptor 110: +==41170== +==41170== +==41170== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayRemesher_valgrind.txt +==41170== +==41170== +==41170== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41170== +==41170== +==41170== +==41170== HEAP SUMMARY: +==41170== in use at exit: 618,249 bytes in 8,234 blocks +==41170== total heap usage: 11,597,069 allocs, 11,588,835 frees, 1,797,524,435 bytes allocated +==41170== +==41170== LEAK SUMMARY: +==41170== definitely lost: 0 bytes in 0 blocks +==41170== indirectly lost: 0 bytes in 0 blocks +==41170== possibly lost: 0 bytes in 0 blocks +==41170== still reachable: 24 bytes in 2 blocks +==41170== suppressed: 618,225 bytes in 8,232 blocks +==41170== Reachable blocks (those to which a pointer was found) are not shown. +==41170== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41170== +==41170== For lists of detected and suppressed errors, rerun with: -s +==41170== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-23_05-40-48/TestAirwayTreeWalker_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAirwayTreeWalker_valgrind.txt new file mode 100644 index 000000000..eff7e356e --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAirwayTreeWalker_valgrind.txt @@ -0,0 +1,36 @@ +==41114== Memcheck, a memory error detector +==41114== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41114== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41114== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayTreeWalker -malloc_debug -malloc_dump -memory_info +==41114== Parent PID: 24048 +==41114== +==41114== +==41114== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41114== Open file descriptor 113: +==41114== +==41114== +==41114== Open file descriptor 110: +==41114== +==41114== +==41114== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayTreeWalker_valgrind.txt +==41114== +==41114== +==41114== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41114== +==41114== +==41114== +==41114== HEAP SUMMARY: +==41114== in use at exit: 24 bytes in 2 blocks +==41114== total heap usage: 7,161 allocs, 7,159 frees, 1,017,860 bytes allocated +==41114== +==41114== LEAK SUMMARY: +==41114== definitely lost: 0 bytes in 0 blocks +==41114== indirectly lost: 0 bytes in 0 blocks +==41114== possibly lost: 0 bytes in 0 blocks +==41114== still reachable: 24 bytes in 2 blocks +==41114== suppressed: 0 bytes in 0 blocks +==41114== Reachable blocks (those to which a pointer was found) are not shown. +==41114== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41114== +==41114== For lists of detected and suppressed errors, rerun with: -s +==41114== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-23_05-40-48/TestAirwayWallModels_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAirwayWallModels_valgrind.txt new file mode 100644 index 000000000..308662c37 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAirwayWallModels_valgrind.txt @@ -0,0 +1,36 @@ +==41197== Memcheck, a memory error detector +==41197== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41197== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41197== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayWallModels -malloc_debug -malloc_dump -memory_info +==41197== Parent PID: 24048 +==41197== +==41197== +==41197== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41197== Open file descriptor 113: +==41197== +==41197== +==41197== Open file descriptor 110: +==41197== +==41197== +==41197== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayWallModels_valgrind.txt +==41197== +==41197== +==41197== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41197== +==41197== +==41197== +==41197== HEAP SUMMARY: +==41197== in use at exit: 24 bytes in 2 blocks +==41197== total heap usage: 7,221 allocs, 7,219 frees, 1,020,277 bytes allocated +==41197== +==41197== LEAK SUMMARY: +==41197== definitely lost: 0 bytes in 0 blocks +==41197== indirectly lost: 0 bytes in 0 blocks +==41197== possibly lost: 0 bytes in 0 blocks +==41197== still reachable: 24 bytes in 2 blocks +==41197== suppressed: 0 bytes in 0 blocks +==41197== Reachable blocks (those to which a pointer was found) are not shown. +==41197== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41197== +==41197== For lists of detected and suppressed errors, rerun with: -s +==41197== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-23_05-40-48/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt new file mode 100644 index 000000000..b8b598f64 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25876== Memcheck, a memory error detector +==25876== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25876== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25876== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==25876== Parent PID: 24048 +==25876== +==25876== +==25876== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25876== Open file descriptor 12: +==25876== at 0xEF9407D: pipe (pipe.c:29) +==25876== by 0x196AC07D: ??? +==25876== by 0x13C514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25876== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25876== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25876== by 0xD871D38: PetscInitialize (pinit.c:924) +==25876== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25876== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25876== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25876== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25876== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25876== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25876== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25876== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) +==25876== +==25876== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25876== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25876== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25876== by 0xD71E822: ??? +==25876== by 0xD71E96F: ??? +==25876== by 0x13CF66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25876== by 0x13CF6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25876== by 0x13CAC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25876== by 0x13C512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25876== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25876== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25876== by 0xD871D38: PetscInitialize (pinit.c:924) +==25876== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25876== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25876== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25876== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25876== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25876== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25876== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25876== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) +==25876== +==25876== Open file descriptor 113: +==25876== +==25876== +==25876== Open file descriptor 110: +==25876== +==25876== +==25876== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt +==25876== +==25876== +==25876== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25876== +==25876== +==25876== +==25876== HEAP SUMMARY: +==25876== in use at exit: 618,322 bytes in 8,238 blocks +==25876== total heap usage: 166,108 allocs, 157,870 frees, 1,349,640,520 bytes allocated +==25876== +==25876== LEAK SUMMARY: +==25876== definitely lost: 0 bytes in 0 blocks +==25876== indirectly lost: 0 bytes in 0 blocks +==25876== possibly lost: 0 bytes in 0 blocks +==25876== still reachable: 24 bytes in 2 blocks +==25876== suppressed: 618,298 bytes in 8,236 blocks +==25876== Reachable blocks (those to which a pointer was found) are not shown. +==25876== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25876== +==25876== For lists of detected and suppressed errors, rerun with: -s +==25876== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestArchiveCell_valgrind.txt b/log-files/2024-09-23_05-40-48/TestArchiveCell_valgrind.txt new file mode 100644 index 000000000..a823be08a --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestArchiveCell_valgrind.txt @@ -0,0 +1,73 @@ +==25422== Memcheck, a memory error detector +==25422== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25422== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25422== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestArchiveCell -malloc_debug -malloc_dump -memory_info +==25422== Parent PID: 24048 +==25422== +==25422== +==25422== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25422== Open file descriptor 12: +==25422== at 0xED5007D: pipe (pipe.c:29) +==25422== by 0x196AC07D: ??? +==25422== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25422== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25422== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25422== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25422== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25422== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25422== by 0x1A4DB1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25422== by 0x19F1FF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25422== by 0x1A2140: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25422== by 0x1A203C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25422== by 0x1A264F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25422== by 0x19D9F5: main (TestArchiveCell.cpp:18) +==25422== +==25422== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25422== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25422== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25422== by 0xD4DA822: ??? +==25422== by 0xD4DA96F: ??? +==25422== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25422== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25422== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25422== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25422== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25422== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25422== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25422== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25422== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25422== by 0x1A4DB1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25422== by 0x19F1FF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25422== by 0x1A2140: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25422== by 0x1A203C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25422== by 0x1A264F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25422== by 0x19D9F5: main (TestArchiveCell.cpp:18) +==25422== +==25422== Open file descriptor 113: +==25422== +==25422== +==25422== Open file descriptor 110: +==25422== +==25422== +==25422== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiveCell_valgrind.txt +==25422== +==25422== +==25422== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25422== +==25422== +==25422== +==25422== HEAP SUMMARY: +==25422== in use at exit: 618,418 bytes in 8,240 blocks +==25422== total heap usage: 53,933 allocs, 45,693 frees, 1,339,008,966 bytes allocated +==25422== +==25422== LEAK SUMMARY: +==25422== definitely lost: 0 bytes in 0 blocks +==25422== indirectly lost: 0 bytes in 0 blocks +==25422== possibly lost: 0 bytes in 0 blocks +==25422== still reachable: 120 bytes in 4 blocks +==25422== suppressed: 618,298 bytes in 8,236 blocks +==25422== Reachable blocks (those to which a pointer was found) are not shown. +==25422== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25422== +==25422== For lists of detected and suppressed errors, rerun with: -s +==25422== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestArchiveFormat_valgrind.txt b/log-files/2024-09-23_05-40-48/TestArchiveFormat_valgrind.txt new file mode 100644 index 000000000..ecb410880 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestArchiveFormat_valgrind.txt @@ -0,0 +1,73 @@ +==40557== Memcheck, a memory error detector +==40557== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40557== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40557== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestArchiveFormat -malloc_debug -malloc_dump -memory_info +==40557== Parent PID: 24048 +==40557== +==40557== +==40557== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40557== Open file descriptor 12: +==40557== at 0x125B207D: pipe (pipe.c:29) +==40557== by 0x1B36D07D: ??? +==40557== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40557== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40557== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40557== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40557== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40557== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40557== by 0x1C0D5D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40557== by 0x1BBA9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40557== by 0x1BE6BA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40557== by 0x1BE5B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40557== by 0x1BEBC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40557== by 0x1BA295: main (TestArchiveFormat.cpp:18) +==40557== +==40557== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40557== at 0x125B6A1C: __open_nocancel (open64_nocancel.c:39) +==40557== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40557== by 0x109F7822: ??? +==40557== by 0x109F796F: ??? +==40557== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40557== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40557== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40557== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40557== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40557== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40557== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40557== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40557== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40557== by 0x1C0D5D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40557== by 0x1BBA9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40557== by 0x1BE6BA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40557== by 0x1BE5B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40557== by 0x1BEBC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40557== by 0x1BA295: main (TestArchiveFormat.cpp:18) +==40557== +==40557== Open file descriptor 113: +==40557== +==40557== +==40557== Open file descriptor 110: +==40557== +==40557== +==40557== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiveFormat_valgrind.txt +==40557== +==40557== +==40557== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40557== +==40557== +==40557== +==40557== HEAP SUMMARY: +==40557== in use at exit: 618,418 bytes in 8,239 blocks +==40557== total heap usage: 137,687 allocs, 129,448 frees, 1,345,408,044 bytes allocated +==40557== +==40557== LEAK SUMMARY: +==40557== definitely lost: 0 bytes in 0 blocks +==40557== indirectly lost: 0 bytes in 0 blocks +==40557== possibly lost: 0 bytes in 0 blocks +==40557== still reachable: 104 bytes in 3 blocks +==40557== suppressed: 618,314 bytes in 8,236 blocks +==40557== Reachable blocks (those to which a pointer was found) are not shown. +==40557== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40557== +==40557== For lists of detected and suppressed errors, rerun with: -s +==40557== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestArchivingExtendedBidomain_valgrind.txt b/log-files/2024-09-23_05-40-48/TestArchivingExtendedBidomain_valgrind.txt new file mode 100644 index 000000000..f123e53d3 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestArchivingExtendedBidomain_valgrind.txt @@ -0,0 +1,73 @@ +==41291== Memcheck, a memory error detector +==41291== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41291== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41291== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestArchivingExtendedBidomain -malloc_debug -malloc_dump -memory_info +==41291== Parent PID: 24048 +==41291== +==41291== +==41291== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41291== Open file descriptor 12: +==41291== at 0xBD4907D: pipe (pipe.c:29) +==41291== by 0x1432407D: ??? +==41291== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41291== by 0xB639418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41291== by 0xB5D2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41291== by 0xA2C9D38: PetscInitialize (pinit.c:924) +==41291== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41291== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41291== by 0x12EE9E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41291== by 0x129BF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41291== by 0x12CABA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41291== by 0x12C9B5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41291== by 0x12CFC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41291== by 0x1283A5: main (TestArchivingExtendedBidomain.cpp:18) +==41291== +==41291== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41291== at 0xBD4DA1C: __open_nocancel (open64_nocancel.c:39) +==41291== by 0xBCD1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41291== by 0xA174822: ??? +==41291== by 0xA17496F: ??? +==41291== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41291== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41291== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41291== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41291== by 0xB639418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41291== by 0xB5D2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41291== by 0xA2C9D38: PetscInitialize (pinit.c:924) +==41291== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41291== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41291== by 0x12EE9E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41291== by 0x129BF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41291== by 0x12CABA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41291== by 0x12C9B5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41291== by 0x12CFC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41291== by 0x1283A5: main (TestArchivingExtendedBidomain.cpp:18) +==41291== +==41291== Open file descriptor 113: +==41291== +==41291== +==41291== Open file descriptor 110: +==41291== +==41291== +==41291== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchivingExtendedBidomain_valgrind.txt +==41291== +==41291== +==41291== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41291== +==41291== +==41291== +==41291== HEAP SUMMARY: +==41291== in use at exit: 618,745 bytes in 8,244 blocks +==41291== total heap usage: 352,178 allocs, 343,934 frees, 1,440,037,865 bytes allocated +==41291== +==41291== LEAK SUMMARY: +==41291== definitely lost: 0 bytes in 0 blocks +==41291== indirectly lost: 0 bytes in 0 blocks +==41291== possibly lost: 0 bytes in 0 blocks +==41291== still reachable: 24 bytes in 2 blocks +==41291== suppressed: 618,721 bytes in 8,242 blocks +==41291== Reachable blocks (those to which a pointer was found) are not shown. +==41291== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41291== +==41291== For lists of detected and suppressed errors, rerun with: -s +==41291== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 51 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestArchivingHelperClasses_valgrind.txt b/log-files/2024-09-23_05-40-48/TestArchivingHelperClasses_valgrind.txt new file mode 100644 index 000000000..0b9aedb27 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestArchivingHelperClasses_valgrind.txt @@ -0,0 +1,73 @@ +==24049== Memcheck, a memory error detector +==24049== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24049== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24049== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestArchivingHelperClasses -malloc_debug -malloc_dump -memory_info +==24049== Parent PID: 24048 +==24049== +==24049== +==24049== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24049== Open file descriptor 12: +==24049== at 0x4CF607D: pipe (pipe.c:29) +==24049== by 0xAEA507D: ??? +==24049== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24049== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24049== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24049== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24049== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24049== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24049== by 0x11F878: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24049== by 0x11ABDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24049== by 0x11D596: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24049== by 0x11D436: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24049== by 0x11DACD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24049== by 0x119005: main (TestArchivingHelperClasses.cpp:19) +==24049== +==24049== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24049== at 0x4CFAA1C: __open_nocancel (open64_nocancel.c:39) +==24049== by 0x4C7EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24049== by 0x4935822: ??? +==24049== by 0x493596F: ??? +==24049== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24049== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24049== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24049== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24049== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24049== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24049== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24049== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24049== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24049== by 0x11F878: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24049== by 0x11ABDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24049== by 0x11D596: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24049== by 0x11D436: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24049== by 0x11DACD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24049== by 0x119005: main (TestArchivingHelperClasses.cpp:19) +==24049== +==24049== Open file descriptor 113: +==24049== +==24049== +==24049== Open file descriptor 110: +==24049== +==24049== +==24049== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchivingHelperClasses_valgrind.txt +==24049== +==24049== +==24049== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24049== +==24049== +==24049== +==24049== HEAP SUMMARY: +==24049== in use at exit: 617,842 bytes in 8,238 blocks +==24049== total heap usage: 45,932 allocs, 37,694 frees, 1,338,445,725 bytes allocated +==24049== +==24049== LEAK SUMMARY: +==24049== definitely lost: 0 bytes in 0 blocks +==24049== indirectly lost: 0 bytes in 0 blocks +==24049== possibly lost: 0 bytes in 0 blocks +==24049== still reachable: 24 bytes in 2 blocks +==24049== suppressed: 617,818 bytes in 8,236 blocks +==24049== Reachable blocks (those to which a pointer was found) are not shown. +==24049== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24049== +==24049== For lists of detected and suppressed errors, rerun with: -s +==24049== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestArchiving_valgrind.txt b/log-files/2024-09-23_05-40-48/TestArchiving_valgrind.txt new file mode 100644 index 000000000..4e2951101 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestArchiving_valgrind.txt @@ -0,0 +1,73 @@ +==24050== Memcheck, a memory error detector +==24050== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24050== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24050== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestArchiving -malloc_debug -malloc_dump -memory_info +==24050== Parent PID: 24048 +==24050== +==24050== +==24050== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24050== Open file descriptor 12: +==24050== at 0x61AB07D: pipe (pipe.c:29) +==24050== by 0xAEA507D: ??? +==24050== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24050== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24050== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24050== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24050== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24050== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24050== by 0x12FB25: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24050== by 0x128E5F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24050== by 0x12CB36: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24050== by 0x12CA31: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24050== by 0x12D045: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24050== by 0x127655: main (TestArchiving.cpp:18) +==24050== +==24050== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24050== at 0x61AFA1C: __open_nocancel (open64_nocancel.c:39) +==24050== by 0x6133BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24050== by 0x4935822: ??? +==24050== by 0x493596F: ??? +==24050== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24050== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24050== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24050== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24050== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24050== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24050== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24050== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24050== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24050== by 0x12FB25: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24050== by 0x128E5F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24050== by 0x12CB36: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24050== by 0x12CA31: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24050== by 0x12D045: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24050== by 0x127655: main (TestArchiving.cpp:18) +==24050== +==24050== Open file descriptor 113: +==24050== +==24050== +==24050== Open file descriptor 110: +==24050== +==24050== +==24050== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiving_valgrind.txt +==24050== +==24050== +==24050== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24050== +==24050== +==24050== +==24050== HEAP SUMMARY: +==24050== in use at exit: 617,842 bytes in 8,238 blocks +==24050== total heap usage: 45,505 allocs, 37,267 frees, 1,338,352,543 bytes allocated +==24050== +==24050== LEAK SUMMARY: +==24050== definitely lost: 0 bytes in 0 blocks +==24050== indirectly lost: 0 bytes in 0 blocks +==24050== possibly lost: 0 bytes in 0 blocks +==24050== still reachable: 24 bytes in 2 blocks +==24050== suppressed: 617,818 bytes in 8,236 blocks +==24050== Reachable blocks (those to which a pointer was found) are not shown. +==24050== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24050== +==24050== For lists of detected and suppressed errors, rerun with: -s +==24050== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestBackwardEulerIvpOdeSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestBackwardEulerIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..829d31364 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestBackwardEulerIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24960== Memcheck, a memory error detector +==24960== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24960== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24960== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestBackwardEulerIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24960== Parent PID: 24048 +==24960== +==24960== +==24960== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24960== Open file descriptor 12: +==24960== at 0x503907D: pipe (pipe.c:29) +==24960== by 0xB1E607D: ??? +==24960== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24960== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24960== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24960== by 0x5308D38: PetscInitialize (pinit.c:924) +==24960== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24960== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24960== by 0x125F28: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24960== by 0x120619: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24960== by 0x122DCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24960== by 0x122CCA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24960== by 0x1232DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24960== by 0x11DEE5: main (TestBackwardEulerIvpOdeSolver.cpp:18) +==24960== +==24960== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24960== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24960== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24960== by 0x4B77822: ??? +==24960== by 0x4B7796F: ??? +==24960== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24960== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24960== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24960== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24960== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24960== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24960== by 0x5308D38: PetscInitialize (pinit.c:924) +==24960== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24960== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24960== by 0x125F28: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24960== by 0x120619: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24960== by 0x122DCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24960== by 0x122CCA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24960== by 0x1232DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24960== by 0x11DEE5: main (TestBackwardEulerIvpOdeSolver.cpp:18) +==24960== +==24960== Open file descriptor 113: +==24960== +==24960== +==24960== Open file descriptor 110: +==24960== +==24960== +==24960== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBackwardEulerIvpOdeSolver_valgrind.txt +==24960== +==24960== +==24960== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24960== +==24960== +==24960== +==24960== HEAP SUMMARY: +==24960== in use at exit: 617,906 bytes in 8,238 blocks +==24960== total heap usage: 386,054 allocs, 377,816 frees, 1,344,036,751 bytes allocated +==24960== +==24960== LEAK SUMMARY: +==24960== definitely lost: 0 bytes in 0 blocks +==24960== indirectly lost: 0 bytes in 0 blocks +==24960== possibly lost: 0 bytes in 0 blocks +==24960== still reachable: 24 bytes in 2 blocks +==24960== suppressed: 617,882 bytes in 8,236 blocks +==24960== Reachable blocks (those to which a pointer was found) are not shown. +==24960== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24960== +==24960== For lists of detected and suppressed errors, rerun with: -s +==24960== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt b/log-files/2024-09-23_05-40-48/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt new file mode 100644 index 000000000..dbd25a809 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt @@ -0,0 +1,73 @@ +==41236== Memcheck, a memory error detector +==41236== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41236== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41236== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBenchmarkPreconditionersForMeshIndependence -malloc_debug -malloc_dump -memory_info +==41236== Parent PID: 24048 +==41236== +==41236== +==41236== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41236== Open file descriptor 12: +==41236== at 0xBCEC07D: pipe (pipe.c:29) +==41236== by 0x1432407D: ??? +==41236== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41236== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41236== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41236== by 0xA160D38: PetscInitialize (pinit.c:924) +==41236== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41236== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41236== by 0x11D9C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41236== by 0x1189AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41236== by 0x11B52E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41236== by 0x11B3CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41236== by 0x11BA65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41236== by 0x116DD5: main (TestBenchmarkPreconditionersForMeshIndependence.cpp:19) +==41236== +==41236== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41236== at 0xBCF0A1C: __open_nocancel (open64_nocancel.c:39) +==41236== by 0xBC74BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41236== by 0xB3F0822: ??? +==41236== by 0xB3F096F: ??? +==41236== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41236== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41236== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41236== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41236== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41236== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41236== by 0xA160D38: PetscInitialize (pinit.c:924) +==41236== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41236== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41236== by 0x11D9C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41236== by 0x1189AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41236== by 0x11B52E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41236== by 0x11B3CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41236== by 0x11BA65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41236== by 0x116DD5: main (TestBenchmarkPreconditionersForMeshIndependence.cpp:19) +==41236== +==41236== Open file descriptor 113: +==41236== +==41236== +==41236== Open file descriptor 110: +==41236== +==41236== +==41236== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt +==41236== +==41236== +==41236== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41236== +==41236== +==41236== +==41236== HEAP SUMMARY: +==41236== in use at exit: 618,761 bytes in 8,245 blocks +==41236== total heap usage: 466,127 allocs, 457,882 frees, 1,542,132,055 bytes allocated +==41236== +==41236== LEAK SUMMARY: +==41236== definitely lost: 0 bytes in 0 blocks +==41236== indirectly lost: 0 bytes in 0 blocks +==41236== possibly lost: 0 bytes in 0 blocks +==41236== still reachable: 40 bytes in 3 blocks +==41236== suppressed: 618,721 bytes in 8,242 blocks +==41236== Reachable blocks (those to which a pointer was found) are not shown. +==41236== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41236== +==41236== For lists of detected and suppressed errors, rerun with: -s +==41236== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 48 from 31) diff --git a/log-files/2024-09-23_05-40-48/TestBidomainDistributedMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestBidomainDistributedMesh_valgrind.txt new file mode 100644 index 000000000..62db1c3f4 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestBidomainDistributedMesh_valgrind.txt @@ -0,0 +1,73 @@ +==41248== Memcheck, a memory error detector +==41248== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41248== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41248== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainDistributedMesh -malloc_debug -malloc_dump -memory_info +==41248== Parent PID: 24048 +==41248== +==41248== +==41248== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41248== Open file descriptor 12: +==41248== at 0xBC0507D: pipe (pipe.c:29) +==41248== by 0x1432407D: ??? +==41248== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41248== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41248== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41248== by 0xA160D38: PetscInitialize (pinit.c:924) +==41248== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41248== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41248== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41248== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41248== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41248== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41248== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41248== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) +==41248== +==41248== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41248== at 0xBC09A1C: __open_nocancel (open64_nocancel.c:39) +==41248== by 0xBB8DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41248== by 0xB3F0822: ??? +==41248== by 0xB3F096F: ??? +==41248== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41248== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41248== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41248== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41248== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41248== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41248== by 0xA160D38: PetscInitialize (pinit.c:924) +==41248== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41248== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41248== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41248== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41248== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41248== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41248== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41248== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) +==41248== +==41248== Open file descriptor 113: +==41248== +==41248== +==41248== Open file descriptor 110: +==41248== +==41248== +==41248== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainDistributedMesh_valgrind.txt +==41248== +==41248== +==41248== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41248== +==41248== +==41248== +==41248== HEAP SUMMARY: +==41248== in use at exit: 618,818 bytes in 8,248 blocks +==41248== total heap usage: 428,253 allocs, 420,005 frees, 1,437,394,422 bytes allocated +==41248== +==41248== LEAK SUMMARY: +==41248== definitely lost: 0 bytes in 0 blocks +==41248== indirectly lost: 0 bytes in 0 blocks +==41248== possibly lost: 0 bytes in 0 blocks +==41248== still reachable: 24 bytes in 2 blocks +==41248== suppressed: 618,794 bytes in 8,246 blocks +==41248== Reachable blocks (those to which a pointer was found) are not shown. +==41248== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41248== +==41248== For lists of detected and suppressed errors, rerun with: -s +==41248== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 55 from 38) diff --git a/log-files/2024-09-23_05-40-48/TestBidomainProblem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestBidomainProblem_valgrind.txt new file mode 100644 index 000000000..70b6cb328 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41264== Memcheck, a memory error detector +==41264== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41264== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41264== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainProblem -malloc_debug -malloc_dump -memory_info +==41264== Parent PID: 24048 +==41264== +==41264== +==41264== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41264== Open file descriptor 12: +==41264== at 0xC0E807D: pipe (pipe.c:29) +==41264== by 0x1432407D: ??? +==41264== by 0xFADE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41264== by 0xB9D6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41264== by 0xB96FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41264== by 0xA666D38: PetscInitialize (pinit.c:924) +==41264== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41264== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41264== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41264== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41264== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41264== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41264== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41264== by 0x138285: main (TestBidomainProblem.cpp:19) +==41264== +==41264== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41264== at 0xC0ECA1C: __open_nocancel (open64_nocancel.c:39) +==41264== by 0xC070BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41264== by 0xA511822: ??? +==41264== by 0xA51196F: ??? +==41264== by 0xFB836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41264== by 0xFB83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41264== by 0xFB39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41264== by 0xFADE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41264== by 0xB9D6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41264== by 0xB96FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41264== by 0xA666D38: PetscInitialize (pinit.c:924) +==41264== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41264== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41264== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41264== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41264== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41264== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41264== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41264== by 0x138285: main (TestBidomainProblem.cpp:19) +==41264== +==41264== Open file descriptor 113: +==41264== +==41264== +==41264== Open file descriptor 110: +==41264== +==41264== +==41264== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainProblem_valgrind.txt +==41264== +==41264== +==41264== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41264== +==41264== +==41264== +==41264== HEAP SUMMARY: +==41264== in use at exit: 618,818 bytes in 8,248 blocks +==41264== total heap usage: 584,920 allocs, 576,672 frees, 1,548,984,403 bytes allocated +==41264== +==41264== LEAK SUMMARY: +==41264== definitely lost: 0 bytes in 0 blocks +==41264== indirectly lost: 0 bytes in 0 blocks +==41264== possibly lost: 0 bytes in 0 blocks +==41264== still reachable: 24 bytes in 2 blocks +==41264== suppressed: 618,794 bytes in 8,246 blocks +==41264== Reachable blocks (those to which a pointer was found) are not shown. +==41264== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41264== +==41264== For lists of detected and suppressed errors, rerun with: -s +==41264== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 103 from 38) diff --git a/log-files/2024-09-23_05-40-48/TestBidomainTissue_valgrind.txt b/log-files/2024-09-23_05-40-48/TestBidomainTissue_valgrind.txt new file mode 100644 index 000000000..25fb4b518 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestBidomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==41256== Memcheck, a memory error detector +==41256== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41256== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41256== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainTissue -malloc_debug -malloc_dump -memory_info +==41256== Parent PID: 24048 +==41256== +==41256== +==41256== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41256== Open file descriptor 12: +==41256== at 0xBB9F07D: pipe (pipe.c:29) +==41256== by 0x1432407D: ??? +==41256== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41256== by 0xBF1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41256== by 0xBEB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41256== by 0xA254D38: PetscInitialize (pinit.c:924) +==41256== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41256== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41256== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41256== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41256== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41256== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41256== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41256== by 0x1326C5: main (TestBidomainTissue.cpp:18) +==41256== +==41256== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41256== at 0xBBA3A1C: __open_nocancel (open64_nocancel.c:39) +==41256== by 0xBB27BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41256== by 0xA101822: ??? +==41256== by 0xA10196F: ??? +==41256== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41256== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41256== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41256== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41256== by 0xBF1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41256== by 0xBEB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41256== by 0xA254D38: PetscInitialize (pinit.c:924) +==41256== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41256== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41256== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41256== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41256== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41256== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41256== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41256== by 0x1326C5: main (TestBidomainTissue.cpp:18) +==41256== +==41256== Open file descriptor 113: +==41256== +==41256== +==41256== Open file descriptor 110: +==41256== +==41256== +==41256== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainTissue_valgrind.txt +==41256== +==41256== +==41256== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41256== +==41256== +==41256== +==41256== HEAP SUMMARY: +==41256== in use at exit: 618,338 bytes in 8,238 blocks +==41256== total heap usage: 192,057 allocs, 183,819 frees, 1,381,063,417 bytes allocated +==41256== +==41256== LEAK SUMMARY: +==41256== definitely lost: 0 bytes in 0 blocks +==41256== indirectly lost: 0 bytes in 0 blocks +==41256== possibly lost: 0 bytes in 0 blocks +==41256== still reachable: 24 bytes in 2 blocks +==41256== suppressed: 618,314 bytes in 8,236 blocks +==41256== Reachable blocks (those to which a pointer was found) are not shown. +==41256== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41256== +==41256== For lists of detected and suppressed errors, rerun with: -s +==41256== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestBidomainWithBathProblem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestBidomainWithBathProblem_valgrind.txt new file mode 100644 index 000000000..3b65ae442 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestBidomainWithBathProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41265== Memcheck, a memory error detector +==41265== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41265== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41265== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainWithBathProblem -malloc_debug -malloc_dump -memory_info +==41265== Parent PID: 24048 +==41265== +==41265== +==41265== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41265== Open file descriptor 12: +==41265== at 0xAC6307D: pipe (pipe.c:29) +==41265== by 0x1432407D: ??? +==41265== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41265== by 0xC35E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41265== by 0xC2F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41265== by 0xAFEED38: PetscInitialize (pinit.c:924) +==41265== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41265== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41265== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41265== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41265== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41265== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41265== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41265== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) +==41265== +==41265== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41265== at 0xAC67A1C: __open_nocancel (open64_nocancel.c:39) +==41265== by 0xABEBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41265== by 0xA49E822: ??? +==41265== by 0xA49E96F: ??? +==41265== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41265== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41265== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41265== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41265== by 0xC35E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41265== by 0xC2F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41265== by 0xAFEED38: PetscInitialize (pinit.c:924) +==41265== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41265== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41265== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41265== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41265== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41265== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41265== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41265== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) +==41265== +==41265== Open file descriptor 113: +==41265== +==41265== +==41265== Open file descriptor 110: +==41265== +==41265== +==41265== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainWithBathProblem_valgrind.txt +==41265== +==41265== +==41265== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41265== +==41265== +==41265== +==41265== HEAP SUMMARY: +==41265== in use at exit: 618,745 bytes in 8,244 blocks +==41265== total heap usage: 1,394,262 allocs, 1,386,018 frees, 1,987,570,917 bytes allocated +==41265== +==41265== LEAK SUMMARY: +==41265== definitely lost: 0 bytes in 0 blocks +==41265== indirectly lost: 0 bytes in 0 blocks +==41265== possibly lost: 0 bytes in 0 blocks +==41265== still reachable: 24 bytes in 2 blocks +==41265== suppressed: 618,721 bytes in 8,242 blocks +==41265== Reachable blocks (those to which a pointer was found) are not shown. +==41265== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41265== +==41265== For lists of detected and suppressed errors, rerun with: -s +==41265== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 66 from 31) diff --git a/log-files/2024-09-23_05-40-48/TestBidomainWithSvi_valgrind.txt b/log-files/2024-09-23_05-40-48/TestBidomainWithSvi_valgrind.txt new file mode 100644 index 000000000..8dc4287a8 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestBidomainWithSvi_valgrind.txt @@ -0,0 +1,73 @@ +==41279== Memcheck, a memory error detector +==41279== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41279== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41279== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainWithSvi -malloc_debug -malloc_dump -memory_info +==41279== Parent PID: 24048 +==41279== +==41279== +==41279== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41279== Open file descriptor 12: +==41279== at 0xA7DF07D: pipe (pipe.c:29) +==41279== by 0x1432407D: ??? +==41279== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41279== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41279== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41279== by 0xAB68D38: PetscInitialize (pinit.c:924) +==41279== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41279== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41279== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41279== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41279== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41279== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41279== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41279== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) +==41279== +==41279== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41279== at 0xA7E3A1C: __open_nocancel (open64_nocancel.c:39) +==41279== by 0xA767BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41279== by 0xA101822: ??? +==41279== by 0xA10196F: ??? +==41279== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41279== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41279== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41279== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41279== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41279== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41279== by 0xAB68D38: PetscInitialize (pinit.c:924) +==41279== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41279== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41279== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41279== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41279== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41279== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41279== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41279== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) +==41279== +==41279== Open file descriptor 113: +==41279== +==41279== +==41279== Open file descriptor 110: +==41279== +==41279== +==41279== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainWithSvi_valgrind.txt +==41279== +==41279== +==41279== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41279== +==41279== +==41279== +==41279== HEAP SUMMARY: +==41279== in use at exit: 618,745 bytes in 8,244 blocks +==41279== total heap usage: 3,540,032 allocs, 3,531,788 frees, 2,046,652,345 bytes allocated +==41279== +==41279== LEAK SUMMARY: +==41279== definitely lost: 0 bytes in 0 blocks +==41279== indirectly lost: 0 bytes in 0 blocks +==41279== possibly lost: 0 bytes in 0 blocks +==41279== still reachable: 24 bytes in 2 blocks +==41279== suppressed: 618,721 bytes in 8,242 blocks +==41279== Reachable blocks (those to which a pointer was found) are not shown. +==41279== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41279== +==41279== For lists of detected and suppressed errors, rerun with: -s +==41279== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 72 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestBoundaryConditionsContainer_valgrind.txt b/log-files/2024-09-23_05-40-48/TestBoundaryConditionsContainer_valgrind.txt new file mode 100644 index 000000000..579146ac3 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestBoundaryConditionsContainer_valgrind.txt @@ -0,0 +1,73 @@ +==25194== Memcheck, a memory error detector +==25194== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25194== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25194== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestBoundaryConditionsContainer -malloc_debug -malloc_dump -memory_info +==25194== Parent PID: 24048 +==25194== +==25194== +==25194== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25194== Open file descriptor 12: +==25194== at 0x844207D: pipe (pipe.c:29) +==25194== by 0x104D507D: ??? +==25194== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25194== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25194== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25194== by 0x6B11D38: PetscInitialize (pinit.c:924) +==25194== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25194== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25194== by 0x13D842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25194== by 0x13868F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25194== by 0x13B1AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25194== by 0x13B0A6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25194== by 0x13B6B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25194== by 0x136E85: main (TestBoundaryConditionsContainer.cpp:18) +==25194== +==25194== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25194== at 0x8446A1C: __open_nocancel (open64_nocancel.c:39) +==25194== by 0x83CABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25194== by 0x69BE822: ??? +==25194== by 0x69BE96F: ??? +==25194== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25194== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25194== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25194== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25194== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25194== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25194== by 0x6B11D38: PetscInitialize (pinit.c:924) +==25194== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25194== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25194== by 0x13D842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25194== by 0x13868F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25194== by 0x13B1AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25194== by 0x13B0A6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25194== by 0x13B6B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25194== by 0x136E85: main (TestBoundaryConditionsContainer.cpp:18) +==25194== +==25194== Open file descriptor 113: +==25194== +==25194== +==25194== Open file descriptor 110: +==25194== +==25194== +==25194== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBoundaryConditionsContainer_valgrind.txt +==25194== +==25194== +==25194== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25194== +==25194== +==25194== +==25194== HEAP SUMMARY: +==25194== in use at exit: 618,258 bytes in 8,238 blocks +==25194== total heap usage: 54,303 allocs, 46,065 frees, 1,340,402,834 bytes allocated +==25194== +==25194== LEAK SUMMARY: +==25194== definitely lost: 0 bytes in 0 blocks +==25194== indirectly lost: 0 bytes in 0 blocks +==25194== possibly lost: 0 bytes in 0 blocks +==25194== still reachable: 24 bytes in 2 blocks +==25194== suppressed: 618,234 bytes in 8,236 blocks +==25194== Reachable blocks (those to which a pointer was found) are not shown. +==25194== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25194== +==25194== For lists of detected and suppressed errors, rerun with: -s +==25194== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestBuskeForces_valgrind.txt b/log-files/2024-09-23_05-40-48/TestBuskeForces_valgrind.txt new file mode 100644 index 000000000..6e22b379a --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestBuskeForces_valgrind.txt @@ -0,0 +1,73 @@ +==25906== Memcheck, a memory error detector +==25906== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25906== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25906== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestBuskeForces -malloc_debug -malloc_dump -memory_info +==25906== Parent PID: 24048 +==25906== +==25906== +==25906== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25906== Open file descriptor 12: +==25906== at 0xF92407D: pipe (pipe.c:29) +==25906== by 0x196AD07D: ??? +==25906== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25906== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25906== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25906== by 0x10210D38: PetscInitialize (pinit.c:924) +==25906== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25906== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25906== by 0x1373C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25906== by 0x1302A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25906== by 0x132EDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25906== by 0x132DD7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25906== by 0x1333EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25906== by 0x12EAA5: main (TestBuskeForces.cpp:18) +==25906== +==25906== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25906== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==25906== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25906== by 0xF137822: ??? +==25906== by 0xF13796F: ??? +==25906== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25906== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25906== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25906== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25906== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25906== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25906== by 0x10210D38: PetscInitialize (pinit.c:924) +==25906== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25906== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25906== by 0x1373C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25906== by 0x1302A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25906== by 0x132EDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25906== by 0x132DD7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25906== by 0x1333EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25906== by 0x12EAA5: main (TestBuskeForces.cpp:18) +==25906== +==25906== Open file descriptor 113: +==25906== +==25906== +==25906== Open file descriptor 110: +==25906== +==25906== +==25906== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBuskeForces_valgrind.txt +==25906== +==25906== +==25906== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25906== +==25906== +==25906== +==25906== HEAP SUMMARY: +==25906== in use at exit: 618,354 bytes in 8,239 blocks +==25906== total heap usage: 56,044 allocs, 47,805 frees, 1,339,842,049 bytes allocated +==25906== +==25906== LEAK SUMMARY: +==25906== definitely lost: 0 bytes in 0 blocks +==25906== indirectly lost: 0 bytes in 0 blocks +==25906== possibly lost: 0 bytes in 0 blocks +==25906== still reachable: 56 bytes in 3 blocks +==25906== suppressed: 618,298 bytes in 8,236 blocks +==25906== Reachable blocks (those to which a pointer was found) are not shown. +==25906== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25906== +==25906== For lists of detected and suppressed errors, rerun with: -s +==25906== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCaBasedCellPopulation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCaBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..731616aeb --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCaBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==25907== Memcheck, a memory error detector +==25907== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25907== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25907== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==25907== Parent PID: 24048 +==25907== +==25907== +==25907== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25907== Open file descriptor 12: +==25907== at 0xF83B07D: pipe (pipe.c:29) +==25907== by 0x196AD07D: ??? +==25907== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25907== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25907== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25907== by 0x10127D38: PetscInitialize (pinit.c:924) +==25907== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25907== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25907== by 0x16556C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25907== by 0x15DBC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25907== by 0x160D98: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25907== by 0x160C38: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25907== by 0x1612CF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25907== by 0x15BFE5: main (TestCaBasedCellPopulation.cpp:19) +==25907== +==25907== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25907== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==25907== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25907== by 0xF137822: ??? +==25907== by 0xF13796F: ??? +==25907== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25907== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25907== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25907== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25907== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25907== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25907== by 0x10127D38: PetscInitialize (pinit.c:924) +==25907== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25907== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25907== by 0x16556C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25907== by 0x15DBC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25907== by 0x160D98: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25907== by 0x160C38: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25907== by 0x1612CF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25907== by 0x15BFE5: main (TestCaBasedCellPopulation.cpp:19) +==25907== +==25907== Open file descriptor 113: +==25907== +==25907== +==25907== Open file descriptor 110: +==25907== +==25907== +==25907== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaBasedCellPopulation_valgrind.txt +==25907== +==25907== +==25907== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25907== +==25907== +==25907== +==25907== HEAP SUMMARY: +==25907== in use at exit: 618,354 bytes in 8,239 blocks +==25907== total heap usage: 75,851 allocs, 67,612 frees, 1,347,378,638 bytes allocated +==25907== +==25907== LEAK SUMMARY: +==25907== definitely lost: 0 bytes in 0 blocks +==25907== indirectly lost: 0 bytes in 0 blocks +==25907== possibly lost: 0 bytes in 0 blocks +==25907== still reachable: 56 bytes in 3 blocks +==25907== suppressed: 618,298 bytes in 8,236 blocks +==25907== Reachable blocks (those to which a pointer was found) are not shown. +==25907== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25907== +==25907== For lists of detected and suppressed errors, rerun with: -s +==25907== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-09-23_05-40-48/TestCaBasedDivisionRules_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCaBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..e428db24e --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCaBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==25930== Memcheck, a memory error detector +==25930== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25930== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25930== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==25930== Parent PID: 24048 +==25930== +==25930== +==25930== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25930== Open file descriptor 12: +==25930== at 0xF09707D: pipe (pipe.c:29) +==25930== by 0x196AC07D: ??? +==25930== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25930== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25930== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25930== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25930== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25930== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25930== by 0x12E085: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25930== by 0x128EDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25930== by 0x12B8BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25930== by 0x12B75E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25930== by 0x12BDF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25930== by 0x127305: main (TestCaBasedDivisionRules.cpp:19) +==25930== +==25930== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25930== at 0xF09BA1C: __open_nocancel (open64_nocancel.c:39) +==25930== by 0xF01FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25930== by 0xD4DA822: ??? +==25930== by 0xD4DA96F: ??? +==25930== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25930== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25930== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25930== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25930== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25930== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25930== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25930== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25930== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25930== by 0x12E085: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25930== by 0x128EDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25930== by 0x12B8BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25930== by 0x12B75E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25930== by 0x12BDF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25930== by 0x127305: main (TestCaBasedDivisionRules.cpp:19) +==25930== +==25930== Open file descriptor 113: +==25930== +==25930== +==25930== Open file descriptor 110: +==25930== +==25930== +==25930== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaBasedDivisionRules_valgrind.txt +==25930== +==25930== +==25930== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25930== +==25930== +==25930== +==25930== HEAP SUMMARY: +==25930== in use at exit: 618,370 bytes in 8,240 blocks +==25930== total heap usage: 56,336 allocs, 48,096 frees, 1,339,109,990 bytes allocated +==25930== +==25930== LEAK SUMMARY: +==25930== definitely lost: 0 bytes in 0 blocks +==25930== indirectly lost: 0 bytes in 0 blocks +==25930== possibly lost: 0 bytes in 0 blocks +==25930== still reachable: 72 bytes in 4 blocks +==25930== suppressed: 618,298 bytes in 8,236 blocks +==25930== Reachable blocks (those to which a pointer was found) are not shown. +==25930== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25930== +==25930== For lists of detected and suppressed errors, rerun with: -s +==25930== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCaUpdateRules_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCaUpdateRules_valgrind.txt new file mode 100644 index 000000000..2cfc44e27 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCaUpdateRules_valgrind.txt @@ -0,0 +1,73 @@ +==25938== Memcheck, a memory error detector +==25938== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25938== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25938== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaUpdateRules -malloc_debug -malloc_dump -memory_info +==25938== Parent PID: 24048 +==25938== +==25938== +==25938== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25938== Open file descriptor 12: +==25938== at 0xDBE007D: pipe (pipe.c:29) +==25938== by 0x196AD07D: ??? +==25938== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25938== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25938== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25938== by 0x10129D38: PetscInitialize (pinit.c:924) +==25938== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25938== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25938== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25938== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25938== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25938== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25938== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25938== by 0x12A645: main (TestCaUpdateRules.cpp:18) +==25938== +==25938== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25938== at 0xDBE4A1C: __open_nocancel (open64_nocancel.c:39) +==25938== by 0xDB68BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25938== by 0xD4DA822: ??? +==25938== by 0xD4DA96F: ??? +==25938== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25938== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25938== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25938== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25938== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25938== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25938== by 0x10129D38: PetscInitialize (pinit.c:924) +==25938== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25938== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25938== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25938== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25938== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25938== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25938== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25938== by 0x12A645: main (TestCaUpdateRules.cpp:18) +==25938== +==25938== Open file descriptor 113: +==25938== +==25938== +==25938== Open file descriptor 110: +==25938== +==25938== +==25938== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaUpdateRules_valgrind.txt +==25938== +==25938== +==25938== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25938== +==25938== +==25938== +==25938== HEAP SUMMARY: +==25938== in use at exit: 618,354 bytes in 8,239 blocks +==25938== total heap usage: 55,757 allocs, 47,518 frees, 1,339,202,203 bytes allocated +==25938== +==25938== LEAK SUMMARY: +==25938== definitely lost: 0 bytes in 0 blocks +==25938== indirectly lost: 0 bytes in 0 blocks +==25938== possibly lost: 0 bytes in 0 blocks +==25938== still reachable: 56 bytes in 3 blocks +==25938== suppressed: 618,298 bytes in 8,236 blocks +==25938== Reachable blocks (those to which a pointer was found) are not shown. +==25938== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25938== +==25938== For lists of detected and suppressed errors, rerun with: -s +==25938== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCableTestProblem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCableTestProblem_valgrind.txt new file mode 100644 index 000000000..df7867c61 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCableTestProblem_valgrind.txt @@ -0,0 +1,73 @@ +==25042== Memcheck, a memory error detector +==25042== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25042== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25042== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestCableTestProblem -malloc_debug -malloc_dump -memory_info +==25042== Parent PID: 24048 +==25042== +==25042== +==25042== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25042== Open file descriptor 12: +==25042== at 0x84E707D: pipe (pipe.c:29) +==25042== by 0x104D507D: ??? +==25042== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25042== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25042== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25042== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25042== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25042== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25042== by 0x1419F6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25042== by 0x13CAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25042== by 0x13F69A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25042== by 0x13F595: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25042== by 0x13FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25042== by 0x13B2F5: main (TestCableTestProblem.cpp:18) +==25042== +==25042== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25042== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25042== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25042== by 0x7D3C822: ??? +==25042== by 0x7D3C96F: ??? +==25042== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25042== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25042== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25042== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25042== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25042== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25042== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25042== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25042== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25042== by 0x1419F6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25042== by 0x13CAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25042== by 0x13F69A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25042== by 0x13F595: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25042== by 0x13FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25042== by 0x13B2F5: main (TestCableTestProblem.cpp:18) +==25042== +==25042== Open file descriptor 113: +==25042== +==25042== +==25042== Open file descriptor 110: +==25042== +==25042== +==25042== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCableTestProblem_valgrind.txt +==25042== +==25042== +==25042== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25042== +==25042== +==25042== +==25042== HEAP SUMMARY: +==25042== in use at exit: 618,258 bytes in 8,238 blocks +==25042== total heap usage: 104,257 allocs, 96,019 frees, 1,341,042,913 bytes allocated +==25042== +==25042== LEAK SUMMARY: +==25042== definitely lost: 0 bytes in 0 blocks +==25042== indirectly lost: 0 bytes in 0 blocks +==25042== possibly lost: 0 bytes in 0 blocks +==25042== still reachable: 24 bytes in 2 blocks +==25042== suppressed: 618,234 bytes in 8,236 blocks +==25042== Reachable blocks (those to which a pointer was found) are not shown. +==25042== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25042== +==25042== For lists of detected and suppressed errors, rerun with: -s +==25042== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt new file mode 100644 index 000000000..820d1f7d5 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt @@ -0,0 +1,73 @@ +==43287== Memcheck, a memory error detector +==43287== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43287== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43287== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacElectroMechanicsFurtherFunctionality -malloc_debug -malloc_dump -memory_info +==43287== Parent PID: 24048 +==43287== +==43287== +==43287== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43287== Open file descriptor 12: +==43287== at 0xBDA807D: pipe (pipe.c:29) +==43287== by 0x1432407D: ??? +==43287== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43287== by 0xBFA5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43287== by 0xBF3ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43287== by 0xA353D38: PetscInitialize (pinit.c:924) +==43287== by 0xA22A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43287== by 0xA22A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43287== by 0x123A6C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43287== by 0x11EC6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43287== by 0x1213DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43287== by 0x12127F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43287== by 0x121915: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43287== by 0x11D095: main (TestCardiacElectroMechanicsFurtherFunctionality.cpp:19) +==43287== +==43287== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43287== at 0xBDACA1C: __open_nocancel (open64_nocancel.c:39) +==43287== by 0xBD30BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43287== by 0xB5E3822: ??? +==43287== by 0xB5E396F: ??? +==43287== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43287== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43287== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43287== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43287== by 0xBFA5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43287== by 0xBF3ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43287== by 0xA353D38: PetscInitialize (pinit.c:924) +==43287== by 0xA22A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43287== by 0xA22A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43287== by 0x123A6C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43287== by 0x11EC6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43287== by 0x1213DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43287== by 0x12127F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43287== by 0x121915: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43287== by 0x11D095: main (TestCardiacElectroMechanicsFurtherFunctionality.cpp:19) +==43287== +==43287== Open file descriptor 113: +==43287== +==43287== +==43287== Open file descriptor 110: +==43287== +==43287== +==43287== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt +==43287== +==43287== +==43287== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43287== +==43287== +==43287== +==43287== HEAP SUMMARY: +==43287== in use at exit: 618,745 bytes in 8,244 blocks +==43287== total heap usage: 1,199,844 allocs, 1,191,600 frees, 1,496,534,878 bytes allocated +==43287== +==43287== LEAK SUMMARY: +==43287== definitely lost: 0 bytes in 0 blocks +==43287== indirectly lost: 0 bytes in 0 blocks +==43287== possibly lost: 0 bytes in 0 blocks +==43287== still reachable: 24 bytes in 2 blocks +==43287== suppressed: 618,721 bytes in 8,242 blocks +==43287== Reachable blocks (those to which a pointer was found) are not shown. +==43287== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43287== +==43287== For lists of detected and suppressed errors, rerun with: -s +==43287== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 57 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestCardiacElectroMechanicsProblem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCardiacElectroMechanicsProblem_valgrind.txt new file mode 100644 index 000000000..da79a36e8 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCardiacElectroMechanicsProblem_valgrind.txt @@ -0,0 +1,73 @@ +==43278== Memcheck, a memory error detector +==43278== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43278== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43278== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacElectroMechanicsProblem -malloc_debug -malloc_dump -memory_info +==43278== Parent PID: 24048 +==43278== +==43278== +==43278== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43278== Open file descriptor 12: +==43278== at 0xABF007D: pipe (pipe.c:29) +==43278== by 0x1432407D: ??? +==43278== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43278== by 0xA3F7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43278== by 0xA390D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43278== by 0xADFBD38: PetscInitialize (pinit.c:924) +==43278== by 0xA2B91D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43278== by 0xA2B9227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43278== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43278== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43278== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43278== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43278== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43278== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) +==43278== +==43278== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43278== at 0xABF4A1C: __open_nocancel (open64_nocancel.c:39) +==43278== by 0xAB78BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43278== by 0xA2F4822: ??? +==43278== by 0xA2F496F: ??? +==43278== by 0xDA036DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43278== by 0xDA03938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43278== by 0xD9B9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43278== by 0xD95E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43278== by 0xA3F7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43278== by 0xA390D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43278== by 0xADFBD38: PetscInitialize (pinit.c:924) +==43278== by 0xA2B91D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43278== by 0xA2B9227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43278== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43278== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43278== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43278== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43278== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43278== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) +==43278== +==43278== Open file descriptor 113: +==43278== +==43278== +==43278== Open file descriptor 110: +==43278== +==43278== +==43278== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacElectroMechanicsProblem_valgrind.txt +==43278== +==43278== +==43278== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43278== +==43278== +==43278== +==43278== HEAP SUMMARY: +==43278== in use at exit: 618,818 bytes in 8,248 blocks +==43278== total heap usage: 580,639 allocs, 572,391 frees, 1,482,474,103 bytes allocated +==43278== +==43278== LEAK SUMMARY: +==43278== definitely lost: 0 bytes in 0 blocks +==43278== indirectly lost: 0 bytes in 0 blocks +==43278== possibly lost: 0 bytes in 0 blocks +==43278== still reachable: 24 bytes in 2 blocks +==43278== suppressed: 618,794 bytes in 8,246 blocks +==43278== Reachable blocks (those to which a pointer was found) are not shown. +==43278== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43278== +==43278== For lists of detected and suppressed errors, rerun with: -s +==43278== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 79 from 38) diff --git a/log-files/2024-09-23_05-40-48/TestCardiacSimulationArchiver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCardiacSimulationArchiver_valgrind.txt new file mode 100644 index 000000000..9a7b02be8 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCardiacSimulationArchiver_valgrind.txt @@ -0,0 +1,73 @@ +==43674== Memcheck, a memory error detector +==43674== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43674== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43674== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacSimulationArchiver -malloc_debug -malloc_dump -memory_info +==43674== Parent PID: 24048 +==43674== +==43674== +==43674== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43674== Open file descriptor 12: +==43674== at 0xBFAF07D: pipe (pipe.c:29) +==43674== by 0x1432407D: ??? +==43674== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43674== by 0xC32C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43674== by 0xC2C5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43674== by 0xA666D38: PetscInitialize (pinit.c:924) +==43674== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43674== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43674== by 0x207DA8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43674== by 0x200F5B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43674== by 0x204A44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43674== by 0x2048E4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43674== by 0x204F7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43674== by 0x1FF1D5: main (TestCardiacSimulationArchiver.cpp:19) +==43674== +==43674== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43674== at 0xBFB3A1C: __open_nocancel (open64_nocancel.c:39) +==43674== by 0xBF37BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43674== by 0xA511822: ??? +==43674== by 0xA51196F: ??? +==43674== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43674== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43674== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43674== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43674== by 0xC32C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43674== by 0xC2C5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43674== by 0xA666D38: PetscInitialize (pinit.c:924) +==43674== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43674== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43674== by 0x207DA8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43674== by 0x200F5B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43674== by 0x204A44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43674== by 0x2048E4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43674== by 0x204F7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43674== by 0x1FF1D5: main (TestCardiacSimulationArchiver.cpp:19) +==43674== +==43674== Open file descriptor 113: +==43674== +==43674== +==43674== Open file descriptor 110: +==43674== +==43674== +==43674== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacSimulationArchiver_valgrind.txt +==43674== +==43674== +==43674== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43674== +==43674== +==43674== +==43674== HEAP SUMMARY: +==43674== in use at exit: 618,745 bytes in 8,244 blocks +==43674== total heap usage: 2,894,962 allocs, 2,886,718 frees, 2,307,101,436 bytes allocated +==43674== +==43674== LEAK SUMMARY: +==43674== definitely lost: 0 bytes in 0 blocks +==43674== indirectly lost: 0 bytes in 0 blocks +==43674== possibly lost: 0 bytes in 0 blocks +==43674== still reachable: 24 bytes in 2 blocks +==43674== suppressed: 618,721 bytes in 8,242 blocks +==43674== Reachable blocks (those to which a pointer was found) are not shown. +==43674== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43674== +==43674== For lists of detected and suppressed errors, rerun with: -s +==43674== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 138 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestCardiacSimulation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCardiacSimulation_valgrind.txt new file mode 100644 index 000000000..5a2f2a22d --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCardiacSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==43672== Memcheck, a memory error detector +==43672== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43672== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43672== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacSimulation -malloc_debug -malloc_dump -memory_info +==43672== Parent PID: 24048 +==43672== +==43672== +==43672== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43672== Open file descriptor 12: +==43672== at 0x892407D: pipe (pipe.c:29) +==43672== by 0x1432507D: ??? +==43672== by 0xEE6D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43672== by 0xA01F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43672== by 0x9FB8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43672== by 0x8CAFD38: PetscInitialize (pinit.c:924) +==43672== by 0x820D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43672== by 0x820D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43672== by 0x1202B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43672== by 0x11A98D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43672== by 0x11E13C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43672== by 0x11DFDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43672== by 0x11E673: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43672== by 0x118DB5: main (TestCardiacSimulation.cpp:19) +==43672== +==43672== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43672== at 0x8928A1C: __open_nocancel (open64_nocancel.c:39) +==43672== by 0x88ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43672== by 0x8248822: ??? +==43672== by 0x824896F: ??? +==43672== by 0xEF126DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43672== by 0xEF12938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43672== by 0xEEC8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43672== by 0xEE6D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43672== by 0xA01F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43672== by 0x9FB8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43672== by 0x8CAFD38: PetscInitialize (pinit.c:924) +==43672== by 0x820D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43672== by 0x820D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43672== by 0x1202B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43672== by 0x11A98D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43672== by 0x11E13C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43672== by 0x11DFDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43672== by 0x11E673: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43672== by 0x118DB5: main (TestCardiacSimulation.cpp:19) +==43672== +==43672== Open file descriptor 113: +==43672== +==43672== +==43672== Open file descriptor 110: +==43672== +==43672== +==43672== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacSimulation_valgrind.txt +==43672== +==43672== +==43672== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43672== +==43672== +==43672== +==43672== HEAP SUMMARY: +==43672== in use at exit: 625,877 bytes in 8,260 blocks +==43672== total heap usage: 4,756,898 allocs, 4,748,638 frees, 2,828,621,319 bytes allocated +==43672== +==43672== LEAK SUMMARY: +==43672== definitely lost: 0 bytes in 0 blocks +==43672== indirectly lost: 0 bytes in 0 blocks +==43672== possibly lost: 0 bytes in 0 blocks +==43672== still reachable: 7,156 bytes in 18 blocks +==43672== suppressed: 618,721 bytes in 8,242 blocks +==43672== Reachable blocks (those to which a pointer was found) are not shown. +==43672== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43672== +==43672== For lists of detected and suppressed errors, rerun with: -s +==43672== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 231 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestCellBasedCellProperties_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellBasedCellProperties_valgrind.txt new file mode 100644 index 000000000..2162a1f4b --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellBasedCellProperties_valgrind.txt @@ -0,0 +1,73 @@ +==25452== Memcheck, a memory error detector +==25452== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25452== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25452== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedCellProperties -malloc_debug -malloc_dump -memory_info +==25452== Parent PID: 24048 +==25452== +==25452== +==25452== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25452== Open file descriptor 12: +==25452== at 0xED5007D: pipe (pipe.c:29) +==25452== by 0x196AC07D: ??? +==25452== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25452== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25452== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25452== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25452== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25452== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25452== by 0x12F18B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25452== by 0x129EE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25452== by 0x12CAE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25452== by 0x12C980: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25452== by 0x12D017: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25452== by 0x128305: main (TestCellBasedCellProperties.cpp:19) +==25452== +==25452== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25452== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25452== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25452== by 0xD4DA822: ??? +==25452== by 0xD4DA96F: ??? +==25452== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25452== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25452== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25452== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25452== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25452== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25452== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25452== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25452== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25452== by 0x12F18B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25452== by 0x129EE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25452== by 0x12CAE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25452== by 0x12C980: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25452== by 0x12D017: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25452== by 0x128305: main (TestCellBasedCellProperties.cpp:19) +==25452== +==25452== Open file descriptor 113: +==25452== +==25452== +==25452== Open file descriptor 110: +==25452== +==25452== +==25452== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedCellProperties_valgrind.txt +==25452== +==25452== +==25452== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25452== +==25452== +==25452== +==25452== HEAP SUMMARY: +==25452== in use at exit: 618,354 bytes in 8,239 blocks +==25452== total heap usage: 53,421 allocs, 45,182 frees, 1,338,996,111 bytes allocated +==25452== +==25452== LEAK SUMMARY: +==25452== definitely lost: 0 bytes in 0 blocks +==25452== indirectly lost: 0 bytes in 0 blocks +==25452== possibly lost: 0 bytes in 0 blocks +==25452== still reachable: 56 bytes in 3 blocks +==25452== suppressed: 618,298 bytes in 8,236 blocks +==25452== Reachable blocks (those to which a pointer was found) are not shown. +==25452== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25452== +==25452== For lists of detected and suppressed errors, rerun with: -s +==25452== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCellBasedEllipticPdeSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellBasedEllipticPdeSolver_valgrind.txt new file mode 100644 index 000000000..e3963f1d1 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellBasedEllipticPdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25552== Memcheck, a memory error detector +==25552== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25552== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25552== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedEllipticPdeSolver -malloc_debug -malloc_dump -memory_info +==25552== Parent PID: 24048 +==25552== +==25552== +==25552== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25552== Open file descriptor 12: +==25552== at 0x1108C07D: pipe (pipe.c:29) +==25552== by 0x196AC07D: ??? +==25552== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25552== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25552== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25552== by 0xF651D38: PetscInitialize (pinit.c:924) +==25552== by 0xF5281D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25552== by 0xF528227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25552== by 0x13C922: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25552== by 0x137A33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25552== by 0x13A5DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25552== by 0x13A4D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25552== by 0x13AAE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25552== by 0x136235: main (TestCellBasedEllipticPdeSolver.cpp:18) +==25552== +==25552== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25552== at 0x11090A1C: __open_nocancel (open64_nocancel.c:39) +==25552== by 0x11014BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25552== by 0x108E1822: ??? +==25552== by 0x108E196F: ??? +==25552== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25552== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25552== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25552== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25552== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25552== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25552== by 0xF651D38: PetscInitialize (pinit.c:924) +==25552== by 0xF5281D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25552== by 0xF528227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25552== by 0x13C922: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25552== by 0x137A33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25552== by 0x13A5DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25552== by 0x13A4D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25552== by 0x13AAE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25552== by 0x136235: main (TestCellBasedEllipticPdeSolver.cpp:18) +==25552== +==25552== Open file descriptor 113: +==25552== +==25552== +==25552== Open file descriptor 110: +==25552== +==25552== +==25552== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEllipticPdeSolver_valgrind.txt +==25552== +==25552== +==25552== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25552== +==25552== +==25552== +==25552== HEAP SUMMARY: +==25552== in use at exit: 618,322 bytes in 8,238 blocks +==25552== total heap usage: 55,378 allocs, 47,140 frees, 1,339,445,025 bytes allocated +==25552== +==25552== LEAK SUMMARY: +==25552== definitely lost: 0 bytes in 0 blocks +==25552== indirectly lost: 0 bytes in 0 blocks +==25552== possibly lost: 0 bytes in 0 blocks +==25552== still reachable: 24 bytes in 2 blocks +==25552== suppressed: 618,298 bytes in 8,236 blocks +==25552== Reachable blocks (those to which a pointer was found) are not shown. +==25552== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25552== +==25552== For lists of detected and suppressed errors, rerun with: -s +==25552== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCellBasedEllipticPdes_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellBasedEllipticPdes_valgrind.txt new file mode 100644 index 000000000..1353a08b0 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellBasedEllipticPdes_valgrind.txt @@ -0,0 +1,73 @@ +==25544== Memcheck, a memory error detector +==25544== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25544== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25544== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedEllipticPdes -malloc_debug -malloc_dump -memory_info +==25544== Parent PID: 24048 +==25544== +==25544== +==25544== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25544== Open file descriptor 12: +==25544== at 0x10CF207D: pipe (pipe.c:29) +==25544== by 0x196AD07D: ??? +==25544== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25544== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25544== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25544== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25544== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25544== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25544== by 0x12CAB7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25544== by 0x127CC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25544== by 0x12A3DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25544== by 0x12A2D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25544== by 0x12A8EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25544== by 0x1264C5: main (TestCellBasedEllipticPdes.cpp:18) +==25544== +==25544== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25544== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==25544== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25544== by 0xF137822: ??? +==25544== by 0xF13796F: ??? +==25544== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25544== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25544== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25544== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25544== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25544== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25544== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25544== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25544== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25544== by 0x12CAB7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25544== by 0x127CC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25544== by 0x12A3DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25544== by 0x12A2D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25544== by 0x12A8EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25544== by 0x1264C5: main (TestCellBasedEllipticPdes.cpp:18) +==25544== +==25544== Open file descriptor 113: +==25544== +==25544== +==25544== Open file descriptor 110: +==25544== +==25544== +==25544== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEllipticPdes_valgrind.txt +==25544== +==25544== +==25544== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25544== +==25544== +==25544== +==25544== HEAP SUMMARY: +==25544== in use at exit: 618,354 bytes in 8,239 blocks +==25544== total heap usage: 79,161 allocs, 70,922 frees, 1,343,927,455 bytes allocated +==25544== +==25544== LEAK SUMMARY: +==25544== definitely lost: 0 bytes in 0 blocks +==25544== indirectly lost: 0 bytes in 0 blocks +==25544== possibly lost: 0 bytes in 0 blocks +==25544== still reachable: 56 bytes in 3 blocks +==25544== suppressed: 618,298 bytes in 8,236 blocks +==25544== Reachable blocks (those to which a pointer was found) are not shown. +==25544== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25544== +==25544== For lists of detected and suppressed errors, rerun with: -s +==25544== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCellBasedEventHandler_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellBasedEventHandler_valgrind.txt new file mode 100644 index 000000000..0f6fb4b9a --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellBasedEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24077== Memcheck, a memory error detector +==24077== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24077== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24077== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCellBasedEventHandler -malloc_debug -malloc_dump -memory_info +==24077== Parent PID: 24048 +==24077== +==24077== +==24077== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24077== Open file descriptor 12: +==24077== at 0x4DEB07D: pipe (pipe.c:29) +==24077== by 0xAEA307D: ??? +==24077== by 0x643A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24077== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24077== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24077== by 0x5036D38: PetscInitialize (pinit.c:924) +==24077== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24077== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24077== by 0x114A22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24077== by 0x110173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24077== by 0x112AEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24077== by 0x1129E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24077== by 0x112FFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24077== by 0x10E975: main (TestCellBasedEventHandler.cpp:18) +==24077== +==24077== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24077== at 0x4DEFA1C: __open_nocancel (open64_nocancel.c:39) +==24077== by 0x4D73BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24077== by 0x4935822: ??? +==24077== by 0x493596F: ??? +==24077== by 0x64E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24077== by 0x64E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24077== by 0x6497922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24077== by 0x643A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24077== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24077== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24077== by 0x5036D38: PetscInitialize (pinit.c:924) +==24077== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24077== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24077== by 0x114A22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24077== by 0x110173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24077== by 0x112AEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24077== by 0x1129E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24077== by 0x112FFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24077== by 0x10E975: main (TestCellBasedEventHandler.cpp:18) +==24077== +==24077== Open file descriptor 113: +==24077== +==24077== +==24077== Open file descriptor 110: +==24077== +==24077== +==24077== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEventHandler_valgrind.txt +==24077== +==24077== +==24077== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24077== +==24077== +==24077== +==24077== HEAP SUMMARY: +==24077== in use at exit: 617,842 bytes in 8,238 blocks +==24077== total heap usage: 44,911 allocs, 36,673 frees, 1,338,159,382 bytes allocated +==24077== +==24077== LEAK SUMMARY: +==24077== definitely lost: 0 bytes in 0 blocks +==24077== indirectly lost: 0 bytes in 0 blocks +==24077== possibly lost: 0 bytes in 0 blocks +==24077== still reachable: 24 bytes in 2 blocks +==24077== suppressed: 617,818 bytes in 8,236 blocks +==24077== Reachable blocks (those to which a pointer was found) are not shown. +==24077== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24077== +==24077== For lists of detected and suppressed errors, rerun with: -s +==24077== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestCellBasedParabolicPdes_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellBasedParabolicPdes_valgrind.txt new file mode 100644 index 000000000..8fbe51352 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellBasedParabolicPdes_valgrind.txt @@ -0,0 +1,73 @@ +==25565== Memcheck, a memory error detector +==25565== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25565== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25565== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedParabolicPdes -malloc_debug -malloc_dump -memory_info +==25565== Parent PID: 24048 +==25565== +==25565== +==25565== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25565== Open file descriptor 12: +==25565== at 0x10CF207D: pipe (pipe.c:29) +==25565== by 0x196AD07D: ??? +==25565== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25565== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25565== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25565== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25565== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25565== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25565== by 0x12B8B3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25565== by 0x126B23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25565== by 0x1291D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25565== by 0x1290D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25565== by 0x1296E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25565== by 0x125325: main (TestCellBasedParabolicPdes.cpp:18) +==25565== +==25565== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25565== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==25565== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25565== by 0xF137822: ??? +==25565== by 0xF13796F: ??? +==25565== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25565== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25565== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25565== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25565== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25565== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25565== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25565== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25565== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25565== by 0x12B8B3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25565== by 0x126B23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25565== by 0x1291D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25565== by 0x1290D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25565== by 0x1296E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25565== by 0x125325: main (TestCellBasedParabolicPdes.cpp:18) +==25565== +==25565== Open file descriptor 113: +==25565== +==25565== +==25565== Open file descriptor 110: +==25565== +==25565== +==25565== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedParabolicPdes_valgrind.txt +==25565== +==25565== +==25565== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25565== +==25565== +==25565== +==25565== HEAP SUMMARY: +==25565== in use at exit: 618,354 bytes in 8,239 blocks +==25565== total heap usage: 69,551 allocs, 61,312 frees, 1,342,137,824 bytes allocated +==25565== +==25565== LEAK SUMMARY: +==25565== definitely lost: 0 bytes in 0 blocks +==25565== indirectly lost: 0 bytes in 0 blocks +==25565== possibly lost: 0 bytes in 0 blocks +==25565== still reachable: 56 bytes in 3 blocks +==25565== suppressed: 618,298 bytes in 8,236 blocks +==25565== Reachable blocks (those to which a pointer was found) are not shown. +==25565== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25565== +==25565== For lists of detected and suppressed errors, rerun with: -s +==25565== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCellBetaCateninWriter_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellBetaCateninWriter_valgrind.txt new file mode 100644 index 000000000..d28f5d2ba --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellBetaCateninWriter_valgrind.txt @@ -0,0 +1,73 @@ +==40492== Memcheck, a memory error detector +==40492== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40492== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40492== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellBetaCateninWriter -malloc_debug -malloc_dump -memory_info +==40492== Parent PID: 24048 +==40492== +==40492== +==40492== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40492== Open file descriptor 12: +==40492== at 0x110FD07D: pipe (pipe.c:29) +==40492== by 0x1B36F07D: ??? +==40492== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40492== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40492== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40492== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40492== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40492== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40492== by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40492== by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40492== by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40492== by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40492== by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40492== by 0x12E905: main (TestCellBetaCateninWriter.cpp:18) +==40492== +==40492== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40492== at 0x11101A1C: __open_nocancel (open64_nocancel.c:39) +==40492== by 0x11085BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40492== by 0x109F7822: ??? +==40492== by 0x109F796F: ??? +==40492== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40492== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40492== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40492== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40492== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40492== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40492== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40492== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40492== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40492== by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40492== by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40492== by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40492== by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40492== by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40492== by 0x12E905: main (TestCellBetaCateninWriter.cpp:18) +==40492== +==40492== Open file descriptor 113: +==40492== +==40492== +==40492== Open file descriptor 110: +==40492== +==40492== +==40492== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBetaCateninWriter_valgrind.txt +==40492== +==40492== +==40492== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40492== +==40492== +==40492== +==40492== HEAP SUMMARY: +==40492== in use at exit: 618,450 bytes in 8,240 blocks +==40492== total heap usage: 63,268 allocs, 55,028 frees, 1,341,083,740 bytes allocated +==40492== +==40492== LEAK SUMMARY: +==40492== definitely lost: 0 bytes in 0 blocks +==40492== indirectly lost: 0 bytes in 0 blocks +==40492== possibly lost: 0 bytes in 0 blocks +==40492== still reachable: 136 bytes in 4 blocks +==40492== suppressed: 618,314 bytes in 8,236 blocks +==40492== Reachable blocks (those to which a pointer was found) are not shown. +==40492== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40492== +==40492== For lists of detected and suppressed errors, rerun with: -s +==40492== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCellCycleModelOdeSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellCycleModelOdeSolver_valgrind.txt new file mode 100644 index 000000000..cda1b7438 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellCycleModelOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25454== Memcheck, a memory error detector +==25454== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25454== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25454== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellCycleModelOdeSolver -malloc_debug -malloc_dump -memory_info +==25454== Parent PID: 24048 +==25454== +==25454== +==25454== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25454== Open file descriptor 12: +==25454== at 0xEF9407D: pipe (pipe.c:29) +==25454== by 0x196AC07D: ??? +==25454== by 0x13C514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25454== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25454== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25454== by 0xD871D38: PetscInitialize (pinit.c:924) +==25454== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25454== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25454== by 0x162DFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25454== by 0x15D597: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25454== by 0x1604CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25454== by 0x16036A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25454== by 0x160A01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25454== by 0x15B575: main (TestCellCycleModelOdeSolver.cpp:19) +==25454== +==25454== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25454== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25454== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25454== by 0xD71E822: ??? +==25454== by 0xD71E96F: ??? +==25454== by 0x13CF66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25454== by 0x13CF6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25454== by 0x13CAC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25454== by 0x13C512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25454== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25454== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25454== by 0xD871D38: PetscInitialize (pinit.c:924) +==25454== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25454== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25454== by 0x162DFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25454== by 0x15D597: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25454== by 0x1604CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25454== by 0x16036A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25454== by 0x160A01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25454== by 0x15B575: main (TestCellCycleModelOdeSolver.cpp:19) +==25454== +==25454== Open file descriptor 113: +==25454== +==25454== +==25454== Open file descriptor 110: +==25454== +==25454== +==25454== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellCycleModelOdeSolver_valgrind.txt +==25454== +==25454== +==25454== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25454== +==25454== +==25454== +==25454== HEAP SUMMARY: +==25454== in use at exit: 618,354 bytes in 8,239 blocks +==25454== total heap usage: 547,402 allocs, 539,163 frees, 1,344,758,930 bytes allocated +==25454== +==25454== LEAK SUMMARY: +==25454== definitely lost: 0 bytes in 0 blocks +==25454== indirectly lost: 0 bytes in 0 blocks +==25454== possibly lost: 0 bytes in 0 blocks +==25454== still reachable: 56 bytes in 3 blocks +==25454== suppressed: 618,298 bytes in 8,236 blocks +==25454== Reachable blocks (those to which a pointer was found) are not shown. +==25454== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25454== +==25454== For lists of detected and suppressed errors, rerun with: -s +==25454== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCellDataMaps_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellDataMaps_valgrind.txt new file mode 100644 index 000000000..903a560c3 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellDataMaps_valgrind.txt @@ -0,0 +1,73 @@ +==25457== Memcheck, a memory error detector +==25457== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25457== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25457== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellDataMaps -malloc_debug -malloc_dump -memory_info +==25457== Parent PID: 24048 +==25457== +==25457== +==25457== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25457== Open file descriptor 12: +==25457== at 0xED9D07D: pipe (pipe.c:29) +==25457== by 0x196AC07D: ??? +==25457== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25457== by 0xE9EC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25457== by 0xE985D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25457== by 0xD659D38: PetscInitialize (pinit.c:924) +==25457== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25457== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25457== by 0x11C5E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25457== by 0x11792D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25457== by 0x11A1FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25457== by 0x11A09E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25457== by 0x11A735: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25457== by 0x115D55: main (TestCellDataMaps.cpp:19) +==25457== +==25457== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25457== at 0xEDA1A1C: __open_nocancel (open64_nocancel.c:39) +==25457== by 0xED25BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25457== by 0xE8E9822: ??? +==25457== by 0xE8E996F: ??? +==25457== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25457== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25457== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25457== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25457== by 0xE9EC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25457== by 0xE985D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25457== by 0xD659D38: PetscInitialize (pinit.c:924) +==25457== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25457== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25457== by 0x11C5E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25457== by 0x11792D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25457== by 0x11A1FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25457== by 0x11A09E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25457== by 0x11A735: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25457== by 0x115D55: main (TestCellDataMaps.cpp:19) +==25457== +==25457== Open file descriptor 113: +==25457== +==25457== +==25457== Open file descriptor 110: +==25457== +==25457== +==25457== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellDataMaps_valgrind.txt +==25457== +==25457== +==25457== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25457== +==25457== +==25457== +==25457== HEAP SUMMARY: +==25457== in use at exit: 618,482 bytes in 8,240 blocks +==25457== total heap usage: 53,646 allocs, 45,406 frees, 1,338,978,531 bytes allocated +==25457== +==25457== LEAK SUMMARY: +==25457== definitely lost: 0 bytes in 0 blocks +==25457== indirectly lost: 0 bytes in 0 blocks +==25457== possibly lost: 0 bytes in 0 blocks +==25457== still reachable: 184 bytes in 4 blocks +==25457== suppressed: 618,298 bytes in 8,236 blocks +==25457== Reachable blocks (those to which a pointer was found) are not shown. +==25457== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25457== +==25457== For lists of detected and suppressed errors, rerun with: -s +==25457== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCellForCrypt_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellForCrypt_valgrind.txt new file mode 100644 index 000000000..2160d10a7 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40354== Memcheck, a memory error detector +==40354== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40354== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40354== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellForCrypt -malloc_debug -malloc_dump -memory_info +==40354== Parent PID: 24048 +==40354== +==40354== +==40354== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40354== Open file descriptor 12: +==40354== at 0xF45E07D: pipe (pipe.c:29) +==40354== by 0x1B36E07D: ??? +==40354== by 0x165804CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40354== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40354== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40354== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40354== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40354== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40354== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40354== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40354== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40354== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40354== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40354== by 0x118975: main (TestCellForCrypt.cpp:18) +==40354== +==40354== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40354== at 0xF462A1C: __open_nocancel (open64_nocancel.c:39) +==40354== by 0xF3E6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40354== by 0xED9C822: ??? +==40354== by 0xED9C96F: ??? +==40354== by 0x166256DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40354== by 0x16625938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40354== by 0x165DB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40354== by 0x165802DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40354== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40354== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40354== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40354== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40354== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40354== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40354== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40354== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40354== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40354== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40354== by 0x118975: main (TestCellForCrypt.cpp:18) +==40354== +==40354== Open file descriptor 113: +==40354== +==40354== +==40354== Open file descriptor 110: +==40354== +==40354== +==40354== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellForCrypt_valgrind.txt +==40354== +==40354== +==40354== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40354== +==40354== +==40354== +==40354== HEAP SUMMARY: +==40354== in use at exit: 618,498 bytes in 8,240 blocks +==40354== total heap usage: 55,769 allocs, 47,529 frees, 1,339,199,366 bytes allocated +==40354== +==40354== LEAK SUMMARY: +==40354== definitely lost: 0 bytes in 0 blocks +==40354== indirectly lost: 0 bytes in 0 blocks +==40354== possibly lost: 0 bytes in 0 blocks +==40354== still reachable: 184 bytes in 4 blocks +==40354== suppressed: 618,314 bytes in 8,236 blocks +==40354== Reachable blocks (those to which a pointer was found) are not shown. +==40354== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40354== +==40354== For lists of detected and suppressed errors, rerun with: -s +==40354== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCellKillers_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellKillers_valgrind.txt new file mode 100644 index 000000000..c4d20ae9a --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellKillers_valgrind.txt @@ -0,0 +1,73 @@ +==25942== Memcheck, a memory error detector +==25942== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25942== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25942== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellKillers -malloc_debug -malloc_dump -memory_info +==25942== Parent PID: 24048 +==25942== +==25942== +==25942== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25942== Open file descriptor 12: +==25942== at 0x10DD907D: pipe (pipe.c:29) +==25942== by 0x196AD07D: ??? +==25942== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25942== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25942== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25942== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25942== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25942== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25942== by 0x1A5341: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25942== by 0x19D239: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25942== by 0x1A087C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25942== by 0x1A071C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25942== by 0x1A0DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25942== by 0x19B655: main (TestCellKillers.cpp:19) +==25942== +==25942== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25942== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==25942== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25942== by 0xF137822: ??? +==25942== by 0xF13796F: ??? +==25942== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25942== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25942== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25942== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25942== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25942== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25942== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25942== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25942== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25942== by 0x1A5341: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25942== by 0x19D239: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25942== by 0x1A087C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25942== by 0x1A071C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25942== by 0x1A0DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25942== by 0x19B655: main (TestCellKillers.cpp:19) +==25942== +==25942== Open file descriptor 113: +==25942== +==25942== +==25942== Open file descriptor 110: +==25942== +==25942== +==25942== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellKillers_valgrind.txt +==25942== +==25942== +==25942== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25942== +==25942== +==25942== +==25942== HEAP SUMMARY: +==25942== in use at exit: 618,354 bytes in 8,239 blocks +==25942== total heap usage: 119,758 allocs, 111,519 frees, 1,344,138,474 bytes allocated +==25942== +==25942== LEAK SUMMARY: +==25942== definitely lost: 0 bytes in 0 blocks +==25942== indirectly lost: 0 bytes in 0 blocks +==25942== possibly lost: 0 bytes in 0 blocks +==25942== still reachable: 56 bytes in 3 blocks +==25942== suppressed: 618,298 bytes in 8,236 blocks +==25942== Reachable blocks (those to which a pointer was found) are not shown. +==25942== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25942== +==25942== For lists of detected and suppressed errors, rerun with: -s +==25942== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCellMutationStates_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellMutationStates_valgrind.txt new file mode 100644 index 000000000..2b9fceed0 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellMutationStates_valgrind.txt @@ -0,0 +1,73 @@ +==25464== Memcheck, a memory error detector +==25464== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25464== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25464== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellMutationStates -malloc_debug -malloc_dump -memory_info +==25464== Parent PID: 24048 +==25464== +==25464== +==25464== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25464== Open file descriptor 12: +==25464== at 0xED5007D: pipe (pipe.c:29) +==25464== by 0x196AC07D: ??? +==25464== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25464== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25464== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25464== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25464== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25464== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25464== by 0x12BE69: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25464== by 0x126E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25464== by 0x129792: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25464== by 0x129632: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25464== by 0x129CC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25464== by 0x125225: main (TestCellMutationStates.cpp:19) +==25464== +==25464== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25464== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25464== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25464== by 0xD4DA822: ??? +==25464== by 0xD4DA96F: ??? +==25464== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25464== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25464== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25464== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25464== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25464== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25464== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25464== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25464== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25464== by 0x12BE69: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25464== by 0x126E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25464== by 0x129792: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25464== by 0x129632: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25464== by 0x129CC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25464== by 0x125225: main (TestCellMutationStates.cpp:19) +==25464== +==25464== Open file descriptor 113: +==25464== +==25464== +==25464== Open file descriptor 110: +==25464== +==25464== +==25464== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellMutationStates_valgrind.txt +==25464== +==25464== +==25464== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25464== +==25464== +==25464== +==25464== HEAP SUMMARY: +==25464== in use at exit: 618,354 bytes in 8,239 blocks +==25464== total heap usage: 53,167 allocs, 44,928 frees, 1,338,924,696 bytes allocated +==25464== +==25464== LEAK SUMMARY: +==25464== definitely lost: 0 bytes in 0 blocks +==25464== indirectly lost: 0 bytes in 0 blocks +==25464== possibly lost: 0 bytes in 0 blocks +==25464== still reachable: 56 bytes in 3 blocks +==25464== suppressed: 618,298 bytes in 8,236 blocks +==25464== Reachable blocks (those to which a pointer was found) are not shown. +==25464== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25464== +==25464== For lists of detected and suppressed errors, rerun with: -s +==25464== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-09-23_05-40-48/TestCellPopulationBoundaryConditions_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellPopulationBoundaryConditions_valgrind.txt new file mode 100644 index 000000000..13590912c --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellPopulationBoundaryConditions_valgrind.txt @@ -0,0 +1,73 @@ +==25957== Memcheck, a memory error detector +==25957== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25957== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25957== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationBoundaryConditions -malloc_debug -malloc_dump -memory_info +==25957== Parent PID: 24048 +==25957== +==25957== +==25957== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25957== Open file descriptor 12: +==25957== at 0xF92407D: pipe (pipe.c:29) +==25957== by 0x196AD07D: ??? +==25957== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25957== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25957== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25957== by 0x10210D38: PetscInitialize (pinit.c:924) +==25957== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25957== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25957== by 0x1550EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25957== by 0x14DBDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25957== by 0x150A32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25957== by 0x1508D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25957== by 0x150F69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25957== by 0x14C005: main (TestCellPopulationBoundaryConditions.cpp:19) +==25957== +==25957== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25957== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==25957== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25957== by 0xF137822: ??? +==25957== by 0xF13796F: ??? +==25957== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25957== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25957== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25957== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25957== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25957== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25957== by 0x10210D38: PetscInitialize (pinit.c:924) +==25957== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25957== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25957== by 0x1550EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25957== by 0x14DBDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25957== by 0x150A32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25957== by 0x1508D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25957== by 0x150F69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25957== by 0x14C005: main (TestCellPopulationBoundaryConditions.cpp:19) +==25957== +==25957== Open file descriptor 113: +==25957== +==25957== +==25957== Open file descriptor 110: +==25957== +==25957== +==25957== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationBoundaryConditions_valgrind.txt +==25957== +==25957== +==25957== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25957== +==25957== +==25957== +==25957== HEAP SUMMARY: +==25957== in use at exit: 618,354 bytes in 8,239 blocks +==25957== total heap usage: 70,298 allocs, 62,059 frees, 1,342,462,763 bytes allocated +==25957== +==25957== LEAK SUMMARY: +==25957== definitely lost: 0 bytes in 0 blocks +==25957== indirectly lost: 0 bytes in 0 blocks +==25957== possibly lost: 0 bytes in 0 blocks +==25957== still reachable: 56 bytes in 3 blocks +==25957== suppressed: 618,298 bytes in 8,236 blocks +==25957== Reachable blocks (those to which a pointer was found) are not shown. +==25957== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25957== +==25957== For lists of detected and suppressed errors, rerun with: -s +==25957== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCellPopulationCountWriters_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellPopulationCountWriters_valgrind.txt new file mode 100644 index 000000000..09dff68da --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellPopulationCountWriters_valgrind.txt @@ -0,0 +1,73 @@ +==25964== Memcheck, a memory error detector +==25964== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25964== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25964== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationCountWriters -malloc_debug -malloc_dump -memory_info +==25964== Parent PID: 24048 +==25964== +==25964== +==25964== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25964== Open file descriptor 12: +==25964== at 0xF83B07D: pipe (pipe.c:29) +==25964== by 0x196AD07D: ??? +==25964== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25964== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25964== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25964== by 0x10127D38: PetscInitialize (pinit.c:924) +==25964== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25964== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25964== by 0x137BD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25964== by 0x130FA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25964== by 0x133996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25964== by 0x133891: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25964== by 0x133EA5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25964== by 0x12F7A5: main (TestCellPopulationCountWriters.cpp:18) +==25964== +==25964== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25964== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==25964== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25964== by 0xF137822: ??? +==25964== by 0xF13796F: ??? +==25964== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25964== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25964== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25964== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25964== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25964== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25964== by 0x10127D38: PetscInitialize (pinit.c:924) +==25964== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25964== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25964== by 0x137BD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25964== by 0x130FA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25964== by 0x133996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25964== by 0x133891: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25964== by 0x133EA5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25964== by 0x12F7A5: main (TestCellPopulationCountWriters.cpp:18) +==25964== +==25964== Open file descriptor 113: +==25964== +==25964== +==25964== Open file descriptor 110: +==25964== +==25964== +==25964== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationCountWriters_valgrind.txt +==25964== +==25964== +==25964== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25964== +==25964== +==25964== +==25964== HEAP SUMMARY: +==25964== in use at exit: 618,354 bytes in 8,239 blocks +==25964== total heap usage: 57,820 allocs, 49,581 frees, 1,346,111,424 bytes allocated +==25964== +==25964== LEAK SUMMARY: +==25964== definitely lost: 0 bytes in 0 blocks +==25964== indirectly lost: 0 bytes in 0 blocks +==25964== possibly lost: 0 bytes in 0 blocks +==25964== still reachable: 56 bytes in 3 blocks +==25964== suppressed: 618,298 bytes in 8,236 blocks +==25964== Reachable blocks (those to which a pointer was found) are not shown. +==25964== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25964== +==25964== For lists of detected and suppressed errors, rerun with: -s +==25964== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCellPopulationEventWriters_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellPopulationEventWriters_valgrind.txt new file mode 100644 index 000000000..deec26a31 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellPopulationEventWriters_valgrind.txt @@ -0,0 +1,73 @@ +==25968== Memcheck, a memory error detector +==25968== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25968== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25968== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationEventWriters -malloc_debug -malloc_dump -memory_info +==25968== Parent PID: 24048 +==25968== +==25968== +==25968== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25968== Open file descriptor 12: +==25968== at 0xF83B07D: pipe (pipe.c:29) +==25968== by 0x196AD07D: ??? +==25968== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25968== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25968== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25968== by 0x10127D38: PetscInitialize (pinit.c:924) +==25968== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25968== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25968== by 0x13559C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25968== by 0x12E53D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25968== by 0x130F8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25968== by 0x130E2C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25968== by 0x1314C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25968== by 0x12C965: main (TestCellPopulationEventWriters.cpp:19) +==25968== +==25968== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25968== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==25968== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25968== by 0xF137822: ??? +==25968== by 0xF13796F: ??? +==25968== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25968== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25968== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25968== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25968== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25968== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25968== by 0x10127D38: PetscInitialize (pinit.c:924) +==25968== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25968== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25968== by 0x13559C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25968== by 0x12E53D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25968== by 0x130F8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25968== by 0x130E2C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25968== by 0x1314C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25968== by 0x12C965: main (TestCellPopulationEventWriters.cpp:19) +==25968== +==25968== Open file descriptor 113: +==25968== +==25968== +==25968== Open file descriptor 110: +==25968== +==25968== +==25968== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationEventWriters_valgrind.txt +==25968== +==25968== +==25968== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25968== +==25968== +==25968== +==25968== HEAP SUMMARY: +==25968== in use at exit: 618,354 bytes in 8,239 blocks +==25968== total heap usage: 69,863 allocs, 61,624 frees, 1,350,933,131 bytes allocated +==25968== +==25968== LEAK SUMMARY: +==25968== definitely lost: 0 bytes in 0 blocks +==25968== indirectly lost: 0 bytes in 0 blocks +==25968== possibly lost: 0 bytes in 0 blocks +==25968== still reachable: 56 bytes in 3 blocks +==25968== suppressed: 618,298 bytes in 8,236 blocks +==25968== Reachable blocks (those to which a pointer was found) are not shown. +==25968== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25968== +==25968== For lists of detected and suppressed errors, rerun with: -s +==25968== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCellPopulationWriters_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellPopulationWriters_valgrind.txt new file mode 100644 index 000000000..bfcea709f --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellPopulationWriters_valgrind.txt @@ -0,0 +1,73 @@ +==25982== Memcheck, a memory error detector +==25982== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25982== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25982== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationWriters -malloc_debug -malloc_dump -memory_info +==25982== Parent PID: 24048 +==25982== +==25982== +==25982== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25982== Open file descriptor 12: +==25982== at 0xF83B07D: pipe (pipe.c:29) +==25982== by 0x196AD07D: ??? +==25982== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25982== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25982== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25982== by 0x10127D38: PetscInitialize (pinit.c:924) +==25982== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25982== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25982== by 0x146C30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25982== by 0x13F5FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25982== by 0x14252E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25982== by 0x1423CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25982== by 0x142A65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25982== by 0x13DA25: main (TestCellPopulationWriters.cpp:19) +==25982== +==25982== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25982== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==25982== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25982== by 0xF137822: ??? +==25982== by 0xF13796F: ??? +==25982== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25982== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25982== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25982== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25982== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25982== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25982== by 0x10127D38: PetscInitialize (pinit.c:924) +==25982== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25982== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25982== by 0x146C30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25982== by 0x13F5FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25982== by 0x14252E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25982== by 0x1423CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25982== by 0x142A65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25982== by 0x13DA25: main (TestCellPopulationWriters.cpp:19) +==25982== +==25982== Open file descriptor 113: +==25982== +==25982== +==25982== Open file descriptor 110: +==25982== +==25982== +==25982== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationWriters_valgrind.txt +==25982== +==25982== +==25982== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25982== +==25982== +==25982== +==25982== HEAP SUMMARY: +==25982== in use at exit: 618,354 bytes in 8,239 blocks +==25982== total heap usage: 157,624 allocs, 149,385 frees, 1,399,028,687 bytes allocated +==25982== +==25982== LEAK SUMMARY: +==25982== definitely lost: 0 bytes in 0 blocks +==25982== indirectly lost: 0 bytes in 0 blocks +==25982== possibly lost: 0 bytes in 0 blocks +==25982== still reachable: 56 bytes in 3 blocks +==25982== suppressed: 618,298 bytes in 8,236 blocks +==25982== Reachable blocks (those to which a pointer was found) are not shown. +==25982== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25982== +==25982== For lists of detected and suppressed errors, rerun with: -s +==25982== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCellProliferativeTypes_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellProliferativeTypes_valgrind.txt new file mode 100644 index 000000000..f440fb554 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellProliferativeTypes_valgrind.txt @@ -0,0 +1,73 @@ +==25477== Memcheck, a memory error detector +==25477== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25477== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25477== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellProliferativeTypes -malloc_debug -malloc_dump -memory_info +==25477== Parent PID: 24048 +==25477== +==25477== +==25477== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25477== Open file descriptor 12: +==25477== at 0xED5007D: pipe (pipe.c:29) +==25477== by 0x196AC07D: ??? +==25477== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25477== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25477== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25477== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25477== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25477== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25477== by 0x12CF1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25477== by 0x127E29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25477== by 0x12A848: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25477== by 0x12A6E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25477== by 0x12AD7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25477== by 0x126245: main (TestCellProliferativeTypes.cpp:19) +==25477== +==25477== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25477== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25477== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25477== by 0xD4DA822: ??? +==25477== by 0xD4DA96F: ??? +==25477== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25477== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25477== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25477== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25477== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25477== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25477== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25477== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25477== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25477== by 0x12CF1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25477== by 0x127E29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25477== by 0x12A848: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25477== by 0x12A6E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25477== by 0x12AD7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25477== by 0x126245: main (TestCellProliferativeTypes.cpp:19) +==25477== +==25477== Open file descriptor 113: +==25477== +==25477== +==25477== Open file descriptor 110: +==25477== +==25477== +==25477== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellProliferativeTypes_valgrind.txt +==25477== +==25477== +==25477== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25477== +==25477== +==25477== +==25477== HEAP SUMMARY: +==25477== in use at exit: 618,354 bytes in 8,239 blocks +==25477== total heap usage: 53,389 allocs, 45,150 frees, 1,339,007,141 bytes allocated +==25477== +==25477== LEAK SUMMARY: +==25477== definitely lost: 0 bytes in 0 blocks +==25477== indirectly lost: 0 bytes in 0 blocks +==25477== possibly lost: 0 bytes in 0 blocks +==25477== still reachable: 56 bytes in 3 blocks +==25477== suppressed: 618,298 bytes in 8,236 blocks +==25477== Reachable blocks (those to which a pointer was found) are not shown. +==25477== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25477== +==25477== For lists of detected and suppressed errors, rerun with: -s +==25477== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-09-23_05-40-48/TestCellProperties_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellProperties_valgrind.txt new file mode 100644 index 000000000..e37f152a6 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellProperties_valgrind.txt @@ -0,0 +1,73 @@ +==43487== Memcheck, a memory error detector +==43487== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43487== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43487== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCellProperties -malloc_debug -malloc_dump -memory_info +==43487== Parent PID: 24048 +==43487== +==43487== +==43487== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43487== Open file descriptor 12: +==43487== at 0x882107D: pipe (pipe.c:29) +==43487== by 0x1432407D: ??? +==43487== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43487== by 0x9F1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43487== by 0x9EB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43487== by 0x8BACD38: PetscInitialize (pinit.c:924) +==43487== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43487== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43487== by 0x11C95A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43487== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43487== by 0x11A450: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43487== by 0x11A2F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43487== by 0x11A987: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43487== by 0x115CD5: main (TestCellProperties.cpp:19) +==43487== +==43487== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43487== at 0x8825A1C: __open_nocancel (open64_nocancel.c:39) +==43487== by 0x87A9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43487== by 0x848A822: ??? +==43487== by 0x848A96F: ??? +==43487== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43487== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43487== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43487== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43487== by 0x9F1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43487== by 0x9EB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43487== by 0x8BACD38: PetscInitialize (pinit.c:924) +==43487== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43487== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43487== by 0x11C95A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43487== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43487== by 0x11A450: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43487== by 0x11A2F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43487== by 0x11A987: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43487== by 0x115CD5: main (TestCellProperties.cpp:19) +==43487== +==43487== Open file descriptor 113: +==43487== +==43487== +==43487== Open file descriptor 110: +==43487== +==43487== +==43487== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellProperties_valgrind.txt +==43487== +==43487== +==43487== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43487== +==43487== +==43487== +==43487== HEAP SUMMARY: +==43487== in use at exit: 618,265 bytes in 8,234 blocks +==43487== total heap usage: 1,086,635 allocs, 1,078,401 frees, 1,460,646,053 bytes allocated +==43487== +==43487== LEAK SUMMARY: +==43487== definitely lost: 0 bytes in 0 blocks +==43487== indirectly lost: 0 bytes in 0 blocks +==43487== possibly lost: 0 bytes in 0 blocks +==43487== still reachable: 24 bytes in 2 blocks +==43487== suppressed: 618,241 bytes in 8,232 blocks +==43487== Reachable blocks (those to which a pointer was found) are not shown. +==43487== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43487== +==43487== For lists of detected and suppressed errors, rerun with: -s +==43487== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestCellPropertyCollection_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellPropertyCollection_valgrind.txt new file mode 100644 index 000000000..d997fe4b0 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellPropertyCollection_valgrind.txt @@ -0,0 +1,73 @@ +==25478== Memcheck, a memory error detector +==25478== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25478== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25478== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPropertyCollection -malloc_debug -malloc_dump -memory_info +==25478== Parent PID: 24048 +==25478== +==25478== +==25478== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25478== Open file descriptor 12: +==25478== at 0xED5007D: pipe (pipe.c:29) +==25478== by 0x196AC07D: ??? +==25478== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25478== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25478== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25478== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25478== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25478== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25478== by 0x1546B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25478== by 0x14F129: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25478== by 0x151D20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25478== by 0x151BC0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25478== by 0x152257: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25478== by 0x14D545: main (TestCellPropertyCollection.cpp:19) +==25478== +==25478== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25478== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25478== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25478== by 0xD4DA822: ??? +==25478== by 0xD4DA96F: ??? +==25478== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25478== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25478== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25478== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25478== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25478== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25478== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25478== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25478== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25478== by 0x1546B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25478== by 0x14F129: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25478== by 0x151D20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25478== by 0x151BC0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25478== by 0x152257: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25478== by 0x14D545: main (TestCellPropertyCollection.cpp:19) +==25478== +==25478== Open file descriptor 113: +==25478== +==25478== +==25478== Open file descriptor 110: +==25478== +==25478== +==25478== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPropertyCollection_valgrind.txt +==25478== +==25478== +==25478== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25478== +==25478== +==25478== +==25478== HEAP SUMMARY: +==25478== in use at exit: 618,354 bytes in 8,239 blocks +==25478== total heap usage: 53,257 allocs, 45,018 frees, 1,338,931,852 bytes allocated +==25478== +==25478== LEAK SUMMARY: +==25478== definitely lost: 0 bytes in 0 blocks +==25478== indirectly lost: 0 bytes in 0 blocks +==25478== possibly lost: 0 bytes in 0 blocks +==25478== still reachable: 56 bytes in 3 blocks +==25478== suppressed: 618,298 bytes in 8,236 blocks +==25478== Reachable blocks (those to which a pointer was found) are not shown. +==25478== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25478== +==25478== For lists of detected and suppressed errors, rerun with: -s +==25478== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCellPropertyRegistry_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellPropertyRegistry_valgrind.txt new file mode 100644 index 000000000..8b082967a --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellPropertyRegistry_valgrind.txt @@ -0,0 +1,73 @@ +==25489== Memcheck, a memory error detector +==25489== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25489== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25489== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPropertyRegistry -malloc_debug -malloc_dump -memory_info +==25489== Parent PID: 24048 +==25489== +==25489== +==25489== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25489== Open file descriptor 12: +==25489== at 0xED5007D: pipe (pipe.c:29) +==25489== by 0x196AC07D: ??? +==25489== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25489== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25489== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25489== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25489== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25489== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25489== by 0x15B69D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25489== by 0x156089: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25489== by 0x158D4C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25489== by 0x158BEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25489== by 0x159283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25489== by 0x1544A5: main (TestCellPropertyRegistry.cpp:19) +==25489== +==25489== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25489== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25489== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25489== by 0xD4DA822: ??? +==25489== by 0xD4DA96F: ??? +==25489== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25489== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25489== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25489== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25489== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25489== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25489== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25489== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25489== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25489== by 0x15B69D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25489== by 0x156089: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25489== by 0x158D4C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25489== by 0x158BEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25489== by 0x159283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25489== by 0x1544A5: main (TestCellPropertyRegistry.cpp:19) +==25489== +==25489== Open file descriptor 113: +==25489== +==25489== +==25489== Open file descriptor 110: +==25489== +==25489== +==25489== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPropertyRegistry_valgrind.txt +==25489== +==25489== +==25489== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25489== +==25489== +==25489== +==25489== HEAP SUMMARY: +==25489== in use at exit: 618,354 bytes in 8,239 blocks +==25489== total heap usage: 53,293 allocs, 45,054 frees, 1,338,960,092 bytes allocated +==25489== +==25489== LEAK SUMMARY: +==25489== definitely lost: 0 bytes in 0 blocks +==25489== indirectly lost: 0 bytes in 0 blocks +==25489== possibly lost: 0 bytes in 0 blocks +==25489== still reachable: 56 bytes in 3 blocks +==25489== suppressed: 618,298 bytes in 8,236 blocks +==25489== Reachable blocks (those to which a pointer was found) are not shown. +==25489== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25489== +==25489== For lists of detected and suppressed errors, rerun with: -s +==25489== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCellSrn_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellSrn_valgrind.txt new file mode 100644 index 000000000..281b64433 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellSrn_valgrind.txt @@ -0,0 +1,73 @@ +==25433== Memcheck, a memory error detector +==25433== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25433== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25433== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellSrn -malloc_debug -malloc_dump -memory_info +==25433== Parent PID: 24048 +==25433== +==25433== +==25433== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25433== Open file descriptor 12: +==25433== at 0xED0E07D: pipe (pipe.c:29) +==25433== by 0x196AC07D: ??? +==25433== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25433== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25433== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25433== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25433== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25433== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25433== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25433== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25433== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25433== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25433== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25433== by 0x113935: main (TestCellSrn.cpp:18) +==25433== +==25433== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25433== at 0xED12A1C: __open_nocancel (open64_nocancel.c:39) +==25433== by 0xEC96BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25433== by 0xE85A822: ??? +==25433== by 0xE85A96F: ??? +==25433== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25433== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25433== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25433== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25433== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25433== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25433== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25433== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25433== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25433== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25433== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25433== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25433== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25433== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25433== by 0x113935: main (TestCellSrn.cpp:18) +==25433== +==25433== Open file descriptor 113: +==25433== +==25433== +==25433== Open file descriptor 110: +==25433== +==25433== +==25433== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellSrn_valgrind.txt +==25433== +==25433== +==25433== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25433== +==25433== +==25433== +==25433== HEAP SUMMARY: +==25433== in use at exit: 618,418 bytes in 8,240 blocks +==25433== total heap usage: 63,351 allocs, 55,111 frees, 1,339,390,101 bytes allocated +==25433== +==25433== LEAK SUMMARY: +==25433== definitely lost: 0 bytes in 0 blocks +==25433== indirectly lost: 0 bytes in 0 blocks +==25433== possibly lost: 0 bytes in 0 blocks +==25433== still reachable: 120 bytes in 4 blocks +==25433== suppressed: 618,298 bytes in 8,236 blocks +==25433== Reachable blocks (those to which a pointer was found) are not shown. +==25433== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25433== +==25433== For lists of detected and suppressed errors, rerun with: -s +==25433== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCellWriters_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellWriters_valgrind.txt new file mode 100644 index 000000000..f4bfc9a82 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellWriters_valgrind.txt @@ -0,0 +1,73 @@ +==25991== Memcheck, a memory error detector +==25991== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25991== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25991== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellWriters -malloc_debug -malloc_dump -memory_info +==25991== Parent PID: 24048 +==25991== +==25991== +==25991== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25991== Open file descriptor 12: +==25991== at 0xFB0E07D: pipe (pipe.c:29) +==25991== by 0x196AD07D: ??? +==25991== by 0x14CB94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25991== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25991== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25991== by 0x10127D38: PetscInitialize (pinit.c:924) +==25991== by 0xF3CD1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25991== by 0xF3CD227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25991== by 0x144A2A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25991== by 0x13CE5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25991== by 0x14024C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25991== by 0x1400EC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25991== by 0x140783: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25991== by 0x13B285: main (TestCellWriters.cpp:19) +==25991== +==25991== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25991== at 0xFB12A1C: __open_nocancel (open64_nocancel.c:39) +==25991== by 0xFA96BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25991== by 0xF408822: ??? +==25991== by 0xF40896F: ??? +==25991== by 0x14D5E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25991== by 0x14D5E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25991== by 0x14D14922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25991== by 0x14CB92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25991== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25991== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25991== by 0x10127D38: PetscInitialize (pinit.c:924) +==25991== by 0xF3CD1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25991== by 0xF3CD227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25991== by 0x144A2A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25991== by 0x13CE5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25991== by 0x14024C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25991== by 0x1400EC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25991== by 0x140783: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25991== by 0x13B285: main (TestCellWriters.cpp:19) +==25991== +==25991== Open file descriptor 113: +==25991== +==25991== +==25991== Open file descriptor 110: +==25991== +==25991== +==25991== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellWriters_valgrind.txt +==25991== +==25991== +==25991== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25991== +==25991== +==25991== +==25991== HEAP SUMMARY: +==25991== in use at exit: 618,354 bytes in 8,239 blocks +==25991== total heap usage: 69,780 allocs, 61,541 frees, 1,342,419,767 bytes allocated +==25991== +==25991== LEAK SUMMARY: +==25991== definitely lost: 0 bytes in 0 blocks +==25991== indirectly lost: 0 bytes in 0 blocks +==25991== possibly lost: 0 bytes in 0 blocks +==25991== still reachable: 56 bytes in 3 blocks +==25991== suppressed: 618,298 bytes in 8,236 blocks +==25991== Reachable blocks (those to which a pointer was found) are not shown. +==25991== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25991== +==25991== For lists of detected and suppressed errors, rerun with: -s +==25991== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCell_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCell_valgrind.txt new file mode 100644 index 000000000..58c14f71e --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCell_valgrind.txt @@ -0,0 +1,73 @@ +==25424== Memcheck, a memory error detector +==25424== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25424== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25424== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCell -malloc_debug -malloc_dump -memory_info +==25424== Parent PID: 24048 +==25424== +==25424== +==25424== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25424== Open file descriptor 12: +==25424== at 0xED0E07D: pipe (pipe.c:29) +==25424== by 0x196AC07D: ??? +==25424== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25424== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25424== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25424== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25424== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25424== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25424== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25424== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25424== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25424== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25424== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25424== by 0x1222F5: main (TestCell.cpp:19) +==25424== +==25424== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25424== at 0xED12A1C: __open_nocancel (open64_nocancel.c:39) +==25424== by 0xEC96BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25424== by 0xE85A822: ??? +==25424== by 0xE85A96F: ??? +==25424== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25424== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25424== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25424== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25424== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25424== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25424== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25424== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25424== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25424== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25424== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25424== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25424== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25424== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25424== by 0x1222F5: main (TestCell.cpp:19) +==25424== +==25424== Open file descriptor 113: +==25424== +==25424== +==25424== Open file descriptor 110: +==25424== +==25424== +==25424== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCell_valgrind.txt +==25424== +==25424== +==25424== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25424== +==25424== +==25424== +==25424== HEAP SUMMARY: +==25424== in use at exit: 618,409 bytes in 8,236 blocks +==25424== total heap usage: 5,183,520 allocs, 5,175,284 frees, 1,819,191,852 bytes allocated +==25424== +==25424== LEAK SUMMARY: +==25424== definitely lost: 0 bytes in 0 blocks +==25424== indirectly lost: 0 bytes in 0 blocks +==25424== possibly lost: 0 bytes in 0 blocks +==25424== still reachable: 184 bytes in 4 blocks +==25424== suppressed: 618,225 bytes in 8,232 blocks +==25424== Reachable blocks (those to which a pointer was found) are not shown. +==25424== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25424== +==25424== For lists of detected and suppressed errors, rerun with: -s +==25424== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestCellsGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellsGenerator_valgrind.txt new file mode 100644 index 000000000..e01b8b98a --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==25503== Memcheck, a memory error detector +==25503== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25503== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25503== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellsGenerator -malloc_debug -malloc_dump -memory_info +==25503== Parent PID: 24048 +==25503== +==25503== +==25503== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25503== Open file descriptor 12: +==25503== at 0xF7F907D: pipe (pipe.c:29) +==25503== by 0x196AD07D: ??? +==25503== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25503== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25503== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25503== by 0x10127D38: PetscInitialize (pinit.c:924) +==25503== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25503== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25503== by 0x1248EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25503== by 0x11F90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25503== by 0x122428: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25503== by 0x1222C8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25503== by 0x12295F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25503== by 0x11DD35: main (TestCellsGenerator.cpp:19) +==25503== +==25503== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25503== at 0xF7FDA1C: __open_nocancel (open64_nocancel.c:39) +==25503== by 0xF781BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25503== by 0xF137822: ??? +==25503== by 0xF13796F: ??? +==25503== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25503== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25503== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25503== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25503== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25503== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25503== by 0x10127D38: PetscInitialize (pinit.c:924) +==25503== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25503== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25503== by 0x1248EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25503== by 0x11F90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25503== by 0x122428: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25503== by 0x1222C8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25503== by 0x12295F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25503== by 0x11DD35: main (TestCellsGenerator.cpp:19) +==25503== +==25503== Open file descriptor 113: +==25503== +==25503== +==25503== Open file descriptor 110: +==25503== +==25503== +==25503== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellsGenerator_valgrind.txt +==25503== +==25503== +==25503== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25503== +==25503== +==25503== +==25503== HEAP SUMMARY: +==25503== in use at exit: 618,418 bytes in 8,240 blocks +==25503== total heap usage: 69,418 allocs, 61,178 frees, 1,340,699,229 bytes allocated +==25503== +==25503== LEAK SUMMARY: +==25503== definitely lost: 0 bytes in 0 blocks +==25503== indirectly lost: 0 bytes in 0 blocks +==25503== possibly lost: 0 bytes in 0 blocks +==25503== still reachable: 120 bytes in 4 blocks +==25503== suppressed: 618,298 bytes in 8,236 blocks +==25503== Reachable blocks (those to which a pointer was found) are not shown. +==25503== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25503== +==25503== For lists of detected and suppressed errors, rerun with: -s +==25503== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCellwiseDataGradient_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCellwiseDataGradient_valgrind.txt new file mode 100644 index 000000000..6a6e4ab07 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCellwiseDataGradient_valgrind.txt @@ -0,0 +1,73 @@ +==25983== Memcheck, a memory error detector +==25983== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25983== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25983== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellwiseDataGradient -malloc_debug -malloc_dump -memory_info +==25983== Parent PID: 24048 +==25983== +==25983== +==25983== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25983== Open file descriptor 12: +==25983== at 0xF7F907D: pipe (pipe.c:29) +==25983== by 0x196AD07D: ??? +==25983== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25983== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25983== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25983== by 0x10127D38: PetscInitialize (pinit.c:924) +==25983== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25983== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25983== by 0x11DD52: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25983== by 0x119493: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25983== by 0x11B86C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25983== by 0x11B767: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25983== by 0x11BD7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25983== by 0x117C95: main (TestCellwiseDataGradient.cpp:18) +==25983== +==25983== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25983== at 0xF7FDA1C: __open_nocancel (open64_nocancel.c:39) +==25983== by 0xF781BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25983== by 0xF137822: ??? +==25983== by 0xF13796F: ??? +==25983== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25983== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25983== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25983== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25983== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25983== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25983== by 0x10127D38: PetscInitialize (pinit.c:924) +==25983== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25983== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25983== by 0x11DD52: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25983== by 0x119493: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25983== by 0x11B86C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25983== by 0x11B767: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25983== by 0x11BD7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25983== by 0x117C95: main (TestCellwiseDataGradient.cpp:18) +==25983== +==25983== Open file descriptor 113: +==25983== +==25983== +==25983== Open file descriptor 110: +==25983== +==25983== +==25983== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellwiseDataGradient_valgrind.txt +==25983== +==25983== +==25983== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25983== +==25983== +==25983== +==25983== HEAP SUMMARY: +==25983== in use at exit: 618,354 bytes in 8,239 blocks +==25983== total heap usage: 418,859 allocs, 410,620 frees, 1,353,658,106 bytes allocated +==25983== +==25983== LEAK SUMMARY: +==25983== definitely lost: 0 bytes in 0 blocks +==25983== indirectly lost: 0 bytes in 0 blocks +==25983== possibly lost: 0 bytes in 0 blocks +==25983== still reachable: 56 bytes in 3 blocks +==25983== suppressed: 618,298 bytes in 8,236 blocks +==25983== Reachable blocks (those to which a pointer was found) are not shown. +==25983== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25983== +==25983== For lists of detected and suppressed errors, rerun with: -s +==25983== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCentreBasedDivisionRules_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCentreBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..9b012eb2b --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCentreBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==26017== Memcheck, a memory error detector +==26017== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26017== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26017== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCentreBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==26017== Parent PID: 24048 +==26017== +==26017== +==26017== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26017== Open file descriptor 12: +==26017== at 0x10DD907D: pipe (pipe.c:29) +==26017== by 0x196AD07D: ??? +==26017== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26017== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26017== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26017== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26017== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26017== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26017== by 0x140B79: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26017== by 0x13BAA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26017== by 0x13E124: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26017== by 0x13E020: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26017== by 0x13E633: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26017== by 0x13A2A5: main (TestCentreBasedDivisionRules.cpp:18) +==26017== +==26017== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26017== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==26017== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26017== by 0xF137822: ??? +==26017== by 0xF13796F: ??? +==26017== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26017== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26017== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26017== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26017== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26017== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26017== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26017== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26017== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26017== by 0x140B79: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26017== by 0x13BAA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26017== by 0x13E124: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26017== by 0x13E020: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26017== by 0x13E633: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26017== by 0x13A2A5: main (TestCentreBasedDivisionRules.cpp:18) +==26017== +==26017== Open file descriptor 113: +==26017== +==26017== +==26017== Open file descriptor 110: +==26017== +==26017== +==26017== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCentreBasedDivisionRules_valgrind.txt +==26017== +==26017== +==26017== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26017== +==26017== +==26017== +==26017== HEAP SUMMARY: +==26017== in use at exit: 618,354 bytes in 8,239 blocks +==26017== total heap usage: 58,548 allocs, 50,309 frees, 1,339,873,507 bytes allocated +==26017== +==26017== LEAK SUMMARY: +==26017== definitely lost: 0 bytes in 0 blocks +==26017== indirectly lost: 0 bytes in 0 blocks +==26017== possibly lost: 0 bytes in 0 blocks +==26017== still reachable: 56 bytes in 3 blocks +==26017== suppressed: 618,298 bytes in 8,236 blocks +==26017== Reachable blocks (those to which a pointer was found) are not shown. +==26017== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26017== +==26017== For lists of detected and suppressed errors, rerun with: -s +==26017== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestChasteBuildInfo_valgrind.txt b/log-files/2024-09-23_05-40-48/TestChasteBuildInfo_valgrind.txt new file mode 100644 index 000000000..288218371 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestChasteBuildInfo_valgrind.txt @@ -0,0 +1,73 @@ +==24078== Memcheck, a memory error detector +==24078== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24078== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24078== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestChasteBuildInfo -malloc_debug -malloc_dump -memory_info +==24078== Parent PID: 24048 +==24078== +==24078== +==24078== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24078== Open file descriptor 12: +==24078== at 0x616907D: pipe (pipe.c:29) +==24078== by 0xAEA507D: ??? +==24078== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24078== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24078== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24078== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24078== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24078== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24078== by 0x111D89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24078== by 0x10DC93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24078== by 0x10FE44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24078== by 0x10FD40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24078== by 0x110353: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24078== by 0x10C495: main (TestChasteBuildInfo.cpp:18) +==24078== +==24078== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24078== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24078== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24078== by 0x5CB3822: ??? +==24078== by 0x5CB396F: ??? +==24078== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24078== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24078== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24078== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24078== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24078== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24078== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24078== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24078== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24078== by 0x111D89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24078== by 0x10DC93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24078== by 0x10FE44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24078== by 0x10FD40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24078== by 0x110353: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24078== by 0x10C495: main (TestChasteBuildInfo.cpp:18) +==24078== +==24078== Open file descriptor 113: +==24078== +==24078== +==24078== Open file descriptor 110: +==24078== +==24078== +==24078== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChasteBuildInfo_valgrind.txt +==24078== +==24078== +==24078== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24078== +==24078== +==24078== +==24078== HEAP SUMMARY: +==24078== in use at exit: 617,842 bytes in 8,238 blocks +==24078== total heap usage: 44,924 allocs, 36,686 frees, 1,338,165,487 bytes allocated +==24078== +==24078== LEAK SUMMARY: +==24078== definitely lost: 0 bytes in 0 blocks +==24078== indirectly lost: 0 bytes in 0 blocks +==24078== possibly lost: 0 bytes in 0 blocks +==24078== still reachable: 24 bytes in 2 blocks +==24078== suppressed: 617,818 bytes in 8,236 blocks +==24078== Reachable blocks (those to which a pointer was found) are not shown. +==24078== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24078== +==24078== For lists of detected and suppressed errors, rerun with: -s +==24078== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestChastePoint_valgrind.txt b/log-files/2024-09-23_05-40-48/TestChastePoint_valgrind.txt new file mode 100644 index 000000000..68015f1c6 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestChastePoint_valgrind.txt @@ -0,0 +1,73 @@ +==24424== Memcheck, a memory error detector +==24424== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24424== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24424== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestChastePoint -malloc_debug -malloc_dump -memory_info +==24424== Parent PID: 24048 +==24424== +==24424== +==24424== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24424== Open file descriptor 12: +==24424== at 0x7E0607D: pipe (pipe.c:29) +==24424== by 0x100C307D: ??? +==24424== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24424== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24424== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24424== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24424== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24424== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24424== by 0x1434C7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24424== by 0x13DFC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24424== by 0x140D84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24424== by 0x140C24: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24424== by 0x1412BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24424== by 0x13C3E5: main (TestChastePoint.cpp:19) +==24424== +==24424== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24424== at 0x7E0AA1C: __open_nocancel (open64_nocancel.c:39) +==24424== by 0x7D8EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24424== by 0x6590822: ??? +==24424== by 0x659096F: ??? +==24424== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24424== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24424== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24424== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24424== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24424== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24424== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24424== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24424== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24424== by 0x1434C7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24424== by 0x13DFC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24424== by 0x140D84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24424== by 0x140C24: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24424== by 0x1412BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24424== by 0x13C3E5: main (TestChastePoint.cpp:19) +==24424== +==24424== Open file descriptor 113: +==24424== +==24424== +==24424== Open file descriptor 110: +==24424== +==24424== +==24424== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChastePoint_valgrind.txt +==24424== +==24424== +==24424== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24424== +==24424== +==24424== +==24424== HEAP SUMMARY: +==24424== in use at exit: 618,226 bytes in 8,238 blocks +==24424== total heap usage: 47,414 allocs, 39,176 frees, 1,338,409,010 bytes allocated +==24424== +==24424== LEAK SUMMARY: +==24424== definitely lost: 0 bytes in 0 blocks +==24424== indirectly lost: 0 bytes in 0 blocks +==24424== possibly lost: 0 bytes in 0 blocks +==24424== still reachable: 24 bytes in 2 blocks +==24424== suppressed: 618,202 bytes in 8,236 blocks +==24424== Reachable blocks (those to which a pointer was found) are not shown. +==24424== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24424== +==24424== For lists of detected and suppressed errors, rerun with: -s +==24424== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestChasteRegions_valgrind.txt b/log-files/2024-09-23_05-40-48/TestChasteRegions_valgrind.txt new file mode 100644 index 000000000..7bc1fea25 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestChasteRegions_valgrind.txt @@ -0,0 +1,73 @@ +==24425== Memcheck, a memory error detector +==24425== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24425== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24425== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestChasteRegions -malloc_debug -malloc_dump -memory_info +==24425== Parent PID: 24048 +==24425== +==24425== +==24425== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24425== Open file descriptor 12: +==24425== at 0x6A3807D: pipe (pipe.c:29) +==24425== by 0x100C307D: ??? +==24425== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24425== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24425== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24425== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==24425== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24425== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24425== by 0x127EAE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24425== by 0x122DBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24425== by 0x12589A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24425== by 0x12573A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24425== by 0x125DD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24425== by 0x1211E5: main (TestChasteRegions.cpp:19) +==24425== +==24425== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24425== at 0x6A3CA1C: __open_nocancel (open64_nocancel.c:39) +==24425== by 0x69C0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24425== by 0x6590822: ??? +==24425== by 0x659096F: ??? +==24425== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24425== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24425== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24425== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24425== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24425== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24425== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==24425== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24425== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24425== by 0x127EAE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24425== by 0x122DBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24425== by 0x12589A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24425== by 0x12573A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24425== by 0x125DD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24425== by 0x1211E5: main (TestChasteRegions.cpp:19) +==24425== +==24425== Open file descriptor 113: +==24425== +==24425== +==24425== Open file descriptor 110: +==24425== +==24425== +==24425== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChasteRegions_valgrind.txt +==24425== +==24425== +==24425== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24425== +==24425== +==24425== +==24425== HEAP SUMMARY: +==24425== in use at exit: 618,226 bytes in 8,238 blocks +==24425== total heap usage: 47,508 allocs, 39,270 frees, 1,338,415,593 bytes allocated +==24425== +==24425== LEAK SUMMARY: +==24425== definitely lost: 0 bytes in 0 blocks +==24425== indirectly lost: 0 bytes in 0 blocks +==24425== possibly lost: 0 bytes in 0 blocks +==24425== still reachable: 24 bytes in 2 blocks +==24425== suppressed: 618,202 bytes in 8,236 blocks +==24425== Reachable blocks (those to which a pointer was found) are not shown. +==24425== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24425== +==24425== For lists of detected and suppressed errors, rerun with: -s +==24425== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestChebyshevIteration_valgrind.txt b/log-files/2024-09-23_05-40-48/TestChebyshevIteration_valgrind.txt new file mode 100644 index 000000000..10daad6de --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestChebyshevIteration_valgrind.txt @@ -0,0 +1,73 @@ +==24350== Memcheck, a memory error detector +==24350== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24350== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24350== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestChebyshevIteration -malloc_debug -malloc_dump -memory_info +==24350== Parent PID: 24048 +==24350== +==24350== +==24350== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24350== Open file descriptor 12: +==24350== at 0x60C107D: pipe (pipe.c:29) +==24350== by 0xAF3907D: ??? +==24350== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24350== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24350== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24350== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24350== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24350== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24350== by 0x115156: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24350== by 0x11068D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24350== by 0x112F8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24350== by 0x112E2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24350== by 0x1134C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24350== by 0x10EAB5: main (TestChebyshevIteration.cpp:19) +==24350== +==24350== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24350== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24350== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24350== by 0x5D42822: ??? +==24350== by 0x5D4296F: ??? +==24350== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24350== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24350== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24350== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24350== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24350== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24350== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24350== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24350== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24350== by 0x115156: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24350== by 0x11068D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24350== by 0x112F8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24350== by 0x112E2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24350== by 0x1134C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24350== by 0x10EAB5: main (TestChebyshevIteration.cpp:19) +==24350== +==24350== Open file descriptor 113: +==24350== +==24350== +==24350== Open file descriptor 110: +==24350== +==24350== +==24350== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChebyshevIteration_valgrind.txt +==24350== +==24350== +==24350== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24350== +==24350== +==24350== +==24350== HEAP SUMMARY: +==24350== in use at exit: 617,858 bytes in 8,238 blocks +==24350== total heap usage: 49,164 allocs, 40,926 frees, 1,357,740,202 bytes allocated +==24350== +==24350== LEAK SUMMARY: +==24350== definitely lost: 0 bytes in 0 blocks +==24350== indirectly lost: 0 bytes in 0 blocks +==24350== possibly lost: 0 bytes in 0 blocks +==24350== still reachable: 24 bytes in 2 blocks +==24350== suppressed: 617,834 bytes in 8,236 blocks +==24350== Reachable blocks (those to which a pointer was found) are not shown. +==24350== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24350== +==24350== For lists of detected and suppressed errors, rerun with: -s +==24350== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestCheckpointing_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCheckpointing_valgrind.txt new file mode 100644 index 000000000..faf09884e --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCheckpointing_valgrind.txt @@ -0,0 +1,73 @@ +==43695== Memcheck, a memory error detector +==43695== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43695== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43695== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCheckpointing -malloc_debug -malloc_dump -memory_info +==43695== Parent PID: 24048 +==43695== +==43695== +==43695== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43695== Open file descriptor 12: +==43695== at 0xA7C307D: pipe (pipe.c:29) +==43695== by 0x1432407D: ??? +==43695== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43695== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43695== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43695== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==43695== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43695== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43695== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43695== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43695== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43695== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43695== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43695== by 0x11CCF5: main (TestCheckpointing.cpp:18) +==43695== +==43695== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43695== at 0xA7C7A1C: __open_nocancel (open64_nocancel.c:39) +==43695== by 0xA74BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43695== by 0xA0E5822: ??? +==43695== by 0xA0E596F: ??? +==43695== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43695== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43695== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43695== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43695== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43695== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43695== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==43695== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43695== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43695== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43695== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43695== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43695== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43695== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43695== by 0x11CCF5: main (TestCheckpointing.cpp:18) +==43695== +==43695== Open file descriptor 113: +==43695== +==43695== +==43695== Open file descriptor 110: +==43695== +==43695== +==43695== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCheckpointing_valgrind.txt +==43695== +==43695== +==43695== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43695== +==43695== +==43695== +==43695== HEAP SUMMARY: +==43695== in use at exit: 618,745 bytes in 8,244 blocks +==43695== total heap usage: 834,309 allocs, 826,065 frees, 1,443,022,506 bytes allocated +==43695== +==43695== LEAK SUMMARY: +==43695== definitely lost: 0 bytes in 0 blocks +==43695== indirectly lost: 0 bytes in 0 blocks +==43695== possibly lost: 0 bytes in 0 blocks +==43695== still reachable: 24 bytes in 2 blocks +==43695== suppressed: 618,721 bytes in 8,242 blocks +==43695== Reachable blocks (those to which a pointer was found) are not shown. +==43695== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43695== +==43695== For lists of detected and suppressed errors, rerun with: -s +==43695== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 57 from 31) diff --git a/log-files/2024-09-23_05-40-48/TestCitations_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCitations_valgrind.txt new file mode 100644 index 000000000..131a7f115 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCitations_valgrind.txt @@ -0,0 +1,79 @@ +==24051== Memcheck, a memory error detector +==24051== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24051== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24051== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCitations -malloc_debug -malloc_dump -memory_info +==24051== Parent PID: 24048 +==24051== +==24051== +==24051== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24051== Open file descriptor 12: +==24051== at 0x4CB207D: pipe (pipe.c:29) +==24051== by 0xAEA507D: ??? +==24051== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24051== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24051== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24051== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24051== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24051== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24051== by 0x11862B: TestCitations::TestChasteCitation() (TestCitations.hpp:72) +==24051== by 0x118ED8: TestDescription_TestCitations_TestChasteCitation::runTest() (TestCitations.cpp:30) +==24051== by 0x111C4A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==24051== by 0x114E74: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==24051== by 0x114D59: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==24051== by 0x114BFF: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==24051== by 0x114AC1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24051== by 0x1150D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24051== by 0x110C15: main (TestCitations.cpp:18) +==24051== +==24051== Open file descriptor 8: /dev/shm/open_mpi.0001 +==24051== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24051== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24051== by 0x4935822: ??? +==24051== by 0x493596F: ??? +==24051== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24051== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24051== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24051== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24051== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24051== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24051== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24051== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24051== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24051== by 0x11862B: TestCitations::TestChasteCitation() (TestCitations.hpp:72) +==24051== by 0x118ED8: TestDescription_TestCitations_TestChasteCitation::runTest() (TestCitations.cpp:30) +==24051== by 0x111C4A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==24051== by 0x114E74: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==24051== by 0x114D59: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==24051== by 0x114BFF: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==24051== by 0x114AC1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24051== by 0x1150D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24051== by 0x110C15: main (TestCitations.cpp:18) +==24051== +==24051== Open file descriptor 113: +==24051== +==24051== +==24051== Open file descriptor 110: +==24051== +==24051== +==24051== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCitations_valgrind.txt +==24051== +==24051== +==24051== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24051== +==24051== +==24051== +==24051== HEAP SUMMARY: +==24051== in use at exit: 617,842 bytes in 8,238 blocks +==24051== total heap usage: 45,216 allocs, 36,978 frees, 1,338,328,650 bytes allocated +==24051== +==24051== LEAK SUMMARY: +==24051== definitely lost: 0 bytes in 0 blocks +==24051== indirectly lost: 0 bytes in 0 blocks +==24051== possibly lost: 0 bytes in 0 blocks +==24051== still reachable: 24 bytes in 2 blocks +==24051== suppressed: 617,818 bytes in 8,236 blocks +==24051== Reachable blocks (those to which a pointer was found) are not shown. +==24051== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24051== +==24051== For lists of detected and suppressed errors, rerun with: -s +==24051== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestCodegenPresent_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCodegenPresent_valgrind.txt new file mode 100644 index 000000000..95c79eef3 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCodegenPresent_valgrind.txt @@ -0,0 +1,73 @@ +==42654== Memcheck, a memory error detector +==42654== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42654== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42654== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCodegenPresent -malloc_debug -malloc_dump -memory_info +==42654== Parent PID: 24048 +==42654== +==42654== +==42654== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42654== Open file descriptor 12: +==42654== at 0x616907D: pipe (pipe.c:29) +==42654== by 0xAEA507D: ??? +==42654== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42654== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42654== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42654== by 0x4A23D38: PetscInitialize (pinit.c:924) +==42654== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42654== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42654== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42654== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42654== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42654== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42654== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42654== by 0x10C695: main (TestCodegenPresent.cpp:18) +==42654== +==42654== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42654== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==42654== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42654== by 0x5CB3822: ??? +==42654== by 0x5CB396F: ??? +==42654== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42654== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42654== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42654== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42654== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42654== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42654== by 0x4A23D38: PetscInitialize (pinit.c:924) +==42654== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42654== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42654== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42654== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42654== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42654== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42654== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42654== by 0x10C695: main (TestCodegenPresent.cpp:18) +==42654== +==42654== Open file descriptor 113: +==42654== +==42654== +==42654== Open file descriptor 110: +==42654== +==42654== +==42654== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCodegenPresent_valgrind.txt +==42654== +==42654== +==42654== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42654== +==42654== +==42654== +==42654== HEAP SUMMARY: +==42654== in use at exit: 617,842 bytes in 8,238 blocks +==42654== total heap usage: 44,922 allocs, 36,684 frees, 1,338,160,735 bytes allocated +==42654== +==42654== LEAK SUMMARY: +==42654== definitely lost: 0 bytes in 0 blocks +==42654== indirectly lost: 0 bytes in 0 blocks +==42654== possibly lost: 0 bytes in 0 blocks +==42654== still reachable: 24 bytes in 2 blocks +==42654== suppressed: 617,818 bytes in 8,236 blocks +==42654== Reachable blocks (those to which a pointer was found) are not shown. +==42654== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42654== +==42654== For lists of detected and suppressed errors, rerun with: -s +==42654== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestColumnDataReaderWriter_valgrind.txt b/log-files/2024-09-23_05-40-48/TestColumnDataReaderWriter_valgrind.txt new file mode 100644 index 000000000..6aafdf045 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestColumnDataReaderWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24301== Memcheck, a memory error detector +==24301== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24301== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24301== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestColumnDataReaderWriter -malloc_debug -malloc_dump -memory_info +==24301== Parent PID: 24048 +==24301== +==24301== +==24301== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24301== Open file descriptor 12: +==24301== at 0x61DC07D: pipe (pipe.c:29) +==24301== by 0xAF1807D: ??? +==24301== by 0x8A2F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24301== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24301== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24301== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24301== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24301== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24301== by 0x11A4DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24301== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24301== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24301== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24301== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24301== by 0x113AF5: main (TestColumnDataReaderWriter.cpp:19) +==24301== +==24301== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24301== at 0x61E0A1C: __open_nocancel (open64_nocancel.c:39) +==24301== by 0x6164BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24301== by 0x5D26822: ??? +==24301== by 0x5D2696F: ??? +==24301== by 0x8AD66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24301== by 0x8AD6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24301== by 0x8A8C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24301== by 0x8A2F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24301== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24301== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24301== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24301== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24301== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24301== by 0x11A4DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24301== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24301== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24301== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24301== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24301== by 0x113AF5: main (TestColumnDataReaderWriter.cpp:19) +==24301== +==24301== Open file descriptor 113: +==24301== +==24301== +==24301== Open file descriptor 110: +==24301== +==24301== +==24301== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestColumnDataReaderWriter_valgrind.txt +==24301== +==24301== +==24301== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24301== +==24301== +==24301== +==24301== HEAP SUMMARY: +==24301== in use at exit: 617,858 bytes in 8,238 blocks +==24301== total heap usage: 61,710 allocs, 53,472 frees, 1,341,174,675 bytes allocated +==24301== +==24301== LEAK SUMMARY: +==24301== definitely lost: 0 bytes in 0 blocks +==24301== indirectly lost: 0 bytes in 0 blocks +==24301== possibly lost: 0 bytes in 0 blocks +==24301== still reachable: 24 bytes in 2 blocks +==24301== suppressed: 617,834 bytes in 8,236 blocks +==24301== Reachable blocks (those to which a pointer was found) are not shown. +==24301== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24301== +==24301== For lists of detected and suppressed errors, rerun with: -s +==24301== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestCombinedOdeSystem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCombinedOdeSystem_valgrind.txt new file mode 100644 index 000000000..80230e679 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCombinedOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24961== Memcheck, a memory error detector +==24961== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24961== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24961== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestCombinedOdeSystem -malloc_debug -malloc_dump -memory_info +==24961== Parent PID: 24048 +==24961== +==24961== +==24961== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24961== Open file descriptor 12: +==24961== at 0x4F1007D: pipe (pipe.c:29) +==24961== by 0xB1E607D: ??? +==24961== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24961== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24961== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24961== by 0x5308D38: PetscInitialize (pinit.c:924) +==24961== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24961== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24961== by 0x11FE4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24961== by 0x11AEED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24961== by 0x11DACC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24961== by 0x11D9C7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24961== by 0x11DFDB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24961== by 0x118A75: main (TestCombinedOdeSystem.cpp:18) +==24961== +==24961== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24961== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39) +==24961== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24961== by 0x4B77822: ??? +==24961== by 0x4B7796F: ??? +==24961== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24961== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24961== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24961== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24961== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24961== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24961== by 0x5308D38: PetscInitialize (pinit.c:924) +==24961== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24961== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24961== by 0x11FE4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24961== by 0x11AEED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24961== by 0x11DACC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24961== by 0x11D9C7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24961== by 0x11DFDB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24961== by 0x118A75: main (TestCombinedOdeSystem.cpp:18) +==24961== +==24961== Open file descriptor 113: +==24961== +==24961== +==24961== Open file descriptor 110: +==24961== +==24961== +==24961== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCombinedOdeSystem_valgrind.txt +==24961== +==24961== +==24961== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24961== +==24961== +==24961== +==24961== HEAP SUMMARY: +==24961== in use at exit: 617,906 bytes in 8,238 blocks +==24961== total heap usage: 46,091 allocs, 37,853 frees, 1,338,259,190 bytes allocated +==24961== +==24961== LEAK SUMMARY: +==24961== definitely lost: 0 bytes in 0 blocks +==24961== indirectly lost: 0 bytes in 0 blocks +==24961== possibly lost: 0 bytes in 0 blocks +==24961== still reachable: 24 bytes in 2 blocks +==24961== suppressed: 617,882 bytes in 8,236 blocks +==24961== Reachable blocks (those to which a pointer was found) are not shown. +==24961== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24961== +==24961== For lists of detected and suppressed errors, rerun with: -s +==24961== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestCommandLineArgumentsTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCommandLineArgumentsTutorial_valgrind.txt new file mode 100644 index 000000000..7de9f21e4 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCommandLineArgumentsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==24296== Memcheck, a memory error detector +==24296== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24296== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24296== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCommandLineArgumentsTutorial -malloc_debug -malloc_dump -memory_info +==24296== Parent PID: 24048 +==24296== +==24296== +==24296== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24296== Open file descriptor 12: +==24296== at 0x4CB207D: pipe (pipe.c:29) +==24296== by 0xAEA507D: ??? +==24296== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24296== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24296== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24296== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24296== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24296== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24296== by 0x112FDA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24296== by 0x10EE73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24296== by 0x111094: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24296== by 0x110F90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24296== by 0x1115A3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24296== by 0x10D675: main (TestCommandLineArgumentsTutorial.cpp:18) +==24296== +==24296== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24296== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24296== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24296== by 0x4935822: ??? +==24296== by 0x493596F: ??? +==24296== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24296== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24296== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24296== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24296== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24296== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24296== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24296== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24296== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24296== by 0x112FDA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24296== by 0x10EE73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24296== by 0x111094: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24296== by 0x110F90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24296== by 0x1115A3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24296== by 0x10D675: main (TestCommandLineArgumentsTutorial.cpp:18) +==24296== +==24296== Open file descriptor 113: +==24296== +==24296== +==24296== Open file descriptor 110: +==24296== +==24296== +==24296== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCommandLineArgumentsTutorial_valgrind.txt +==24296== +==24296== +==24296== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24296== +==24296== +==24296== +==24296== HEAP SUMMARY: +==24296== in use at exit: 617,842 bytes in 8,238 blocks +==24296== total heap usage: 44,943 allocs, 36,705 frees, 1,338,163,248 bytes allocated +==24296== +==24296== LEAK SUMMARY: +==24296== definitely lost: 0 bytes in 0 blocks +==24296== indirectly lost: 0 bytes in 0 blocks +==24296== possibly lost: 0 bytes in 0 blocks +==24296== still reachable: 24 bytes in 2 blocks +==24296== suppressed: 617,818 bytes in 8,236 blocks +==24296== Reachable blocks (those to which a pointer was found) are not shown. +==24296== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24296== +==24296== For lists of detected and suppressed errors, rerun with: -s +==24296== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestCommandLineArguments_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCommandLineArguments_valgrind.txt new file mode 100644 index 000000000..80fa772a4 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCommandLineArguments_valgrind.txt @@ -0,0 +1,73 @@ +==24052== Memcheck, a memory error detector +==24052== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24052== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24052== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCommandLineArguments -malloc_debug -malloc_dump -memory_info +==24052== Parent PID: 24048 +==24052== +==24052== +==24052== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24052== Open file descriptor 12: +==24052== at 0x4CB207D: pipe (pipe.c:29) +==24052== by 0xAEA507D: ??? +==24052== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24052== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24052== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24052== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24052== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24052== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24052== by 0x115FD0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24052== by 0x11158D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24052== by 0x114072: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24052== by 0x113F12: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24052== by 0x1145A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24052== by 0x10F9B5: main (TestCommandLineArguments.cpp:19) +==24052== +==24052== Open file descriptor 8: /dev/shm/open_mpi.0001 +==24052== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24052== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24052== by 0x4935822: ??? +==24052== by 0x493596F: ??? +==24052== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24052== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24052== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24052== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24052== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24052== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24052== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24052== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24052== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24052== by 0x115FD0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24052== by 0x11158D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24052== by 0x114072: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24052== by 0x113F12: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24052== by 0x1145A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24052== by 0x10F9B5: main (TestCommandLineArguments.cpp:19) +==24052== +==24052== Open file descriptor 113: +==24052== +==24052== +==24052== Open file descriptor 110: +==24052== +==24052== +==24052== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCommandLineArguments_valgrind.txt +==24052== +==24052== +==24052== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24052== +==24052== +==24052== +==24052== HEAP SUMMARY: +==24052== in use at exit: 617,842 bytes in 8,238 blocks +==24052== total heap usage: 45,101 allocs, 36,863 frees, 1,338,179,283 bytes allocated +==24052== +==24052== LEAK SUMMARY: +==24052== definitely lost: 0 bytes in 0 blocks +==24052== indirectly lost: 0 bytes in 0 blocks +==24052== possibly lost: 0 bytes in 0 blocks +==24052== still reachable: 24 bytes in 2 blocks +==24052== suppressed: 617,818 bytes in 8,236 blocks +==24052== Reachable blocks (those to which a pointer was found) are not shown. +==24052== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24052== +==24052== For lists of detected and suppressed errors, rerun with: -s +==24052== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestCompressibleNonlinearElasticitySolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCompressibleNonlinearElasticitySolver_valgrind.txt new file mode 100644 index 000000000..be4596226 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCompressibleNonlinearElasticitySolver_valgrind.txt @@ -0,0 +1,73 @@ +==25336== Memcheck, a memory error detector +==25336== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25336== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25336== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestCompressibleNonlinearElasticitySolver -malloc_debug -malloc_dump -memory_info +==25336== Parent PID: 24048 +==25336== +==25336== +==25336== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25336== Open file descriptor 12: +==25336== at 0x879E07D: pipe (pipe.c:29) +==25336== by 0x106D807D: ??? +==25336== by 0xBF914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25336== by 0x7FBF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25336== by 0x7F58D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25336== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25336== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25336== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25336== by 0x169A90: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25336== by 0x163FD1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25336== by 0x16757C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25336== by 0x16741C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25336== by 0x167AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25336== by 0x161595: main (TestCompressibleNonlinearElasticitySolver.cpp:19) +==25336== +==25336== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25336== at 0x87A2A1C: __open_nocancel (open64_nocancel.c:39) +==25336== by 0x8726BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25336== by 0x7EBC822: ??? +==25336== by 0x7EBC96F: ??? +==25336== by 0xC0366DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25336== by 0xC036938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25336== by 0xBFEC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25336== by 0xBF912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25336== by 0x7FBF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25336== by 0x7F58D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25336== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25336== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25336== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25336== by 0x169A90: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25336== by 0x163FD1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25336== by 0x16757C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25336== by 0x16741C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25336== by 0x167AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25336== by 0x161595: main (TestCompressibleNonlinearElasticitySolver.cpp:19) +==25336== +==25336== Open file descriptor 113: +==25336== +==25336== +==25336== Open file descriptor 110: +==25336== +==25336== +==25336== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCompressibleNonlinearElasticitySolver_valgrind.txt +==25336== +==25336== +==25336== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25336== +==25336== +==25336== +==25336== HEAP SUMMARY: +==25336== in use at exit: 618,274 bytes in 8,238 blocks +==25336== total heap usage: 309,156 allocs, 300,918 frees, 1,381,169,189 bytes allocated +==25336== +==25336== LEAK SUMMARY: +==25336== definitely lost: 0 bytes in 0 blocks +==25336== indirectly lost: 0 bytes in 0 blocks +==25336== possibly lost: 0 bytes in 0 blocks +==25336== still reachable: 24 bytes in 2 blocks +==25336== suppressed: 618,250 bytes in 8,236 blocks +==25336== Reachable blocks (those to which a pointer was found) are not shown. +==25336== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25336== +==25336== For lists of detected and suppressed errors, rerun with: -s +==25336== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestConductivityTensors_valgrind.txt b/log-files/2024-09-23_05-40-48/TestConductivityTensors_valgrind.txt new file mode 100644 index 000000000..f77250b4c --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestConductivityTensors_valgrind.txt @@ -0,0 +1,73 @@ +==43696== Memcheck, a memory error detector +==43696== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43696== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43696== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestConductivityTensors -malloc_debug -malloc_dump -memory_info +==43696== Parent PID: 24048 +==43696== +==43696== +==43696== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43696== Open file descriptor 12: +==43696== at 0xA68407D: pipe (pipe.c:29) +==43696== by 0x1432407D: ??? +==43696== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43696== by 0xBD7D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43696== by 0xBD16D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43696== by 0xAA0DD38: PetscInitialize (pinit.c:924) +==43696== by 0x9E841D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43696== by 0x9E84227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43696== by 0x1288D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43696== by 0x123B0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43696== by 0x12665E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43696== by 0x1264FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43696== by 0x126B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43696== by 0x121F35: main (TestConductivityTensors.cpp:19) +==43696== +==43696== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43696== at 0xA688A1C: __open_nocancel (open64_nocancel.c:39) +==43696== by 0xA60CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43696== by 0x9EBF822: ??? +==43696== by 0x9EBF96F: ??? +==43696== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43696== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43696== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43696== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43696== by 0xBD7D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43696== by 0xBD16D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43696== by 0xAA0DD38: PetscInitialize (pinit.c:924) +==43696== by 0x9E841D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43696== by 0x9E84227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43696== by 0x1288D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43696== by 0x123B0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43696== by 0x12665E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43696== by 0x1264FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43696== by 0x126B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43696== by 0x121F35: main (TestConductivityTensors.cpp:19) +==43696== +==43696== Open file descriptor 113: +==43696== +==43696== +==43696== Open file descriptor 110: +==43696== +==43696== +==43696== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConductivityTensors_valgrind.txt +==43696== +==43696== +==43696== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43696== +==43696== +==43696== +==43696== HEAP SUMMARY: +==43696== in use at exit: 618,338 bytes in 8,238 blocks +==43696== total heap usage: 58,721 allocs, 50,483 frees, 1,339,525,487 bytes allocated +==43696== +==43696== LEAK SUMMARY: +==43696== definitely lost: 0 bytes in 0 blocks +==43696== indirectly lost: 0 bytes in 0 blocks +==43696== possibly lost: 0 bytes in 0 blocks +==43696== still reachable: 24 bytes in 2 blocks +==43696== suppressed: 618,314 bytes in 8,236 blocks +==43696== Reachable blocks (those to which a pointer was found) are not shown. +==43696== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43696== +==43696== For lists of detected and suppressed errors, rerun with: -s +==43696== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestConstBoundaryCondition_valgrind.txt b/log-files/2024-09-23_05-40-48/TestConstBoundaryCondition_valgrind.txt new file mode 100644 index 000000000..611ee5450 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestConstBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==25207== Memcheck, a memory error detector +==25207== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25207== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25207== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestConstBoundaryCondition -malloc_debug -malloc_dump -memory_info +==25207== Parent PID: 24048 +==25207== +==25207== +==25207== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25207== Open file descriptor 12: +==25207== at 0x6CAC07D: pipe (pipe.c:29) +==25207== by 0x104D507D: ??? +==25207== by 0xC31D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25207== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25207== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25207== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25207== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25207== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25207== by 0x111DEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25207== by 0x10DBB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25207== by 0x10FEA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25207== by 0x10FD9D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25207== by 0x1103B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25207== by 0x10C3B5: main (TestConstBoundaryCondition.cpp:18) +==25207== +==25207== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25207== at 0x6CB0A1C: __open_nocancel (open64_nocancel.c:39) +==25207== by 0x6C34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25207== by 0x692F822: ??? +==25207== by 0x692F96F: ??? +==25207== by 0xC3C26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25207== by 0xC3C2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25207== by 0xC378922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25207== by 0xC31D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25207== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25207== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25207== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25207== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25207== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25207== by 0x111DEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25207== by 0x10DBB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25207== by 0x10FEA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25207== by 0x10FD9D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25207== by 0x1103B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25207== by 0x10C3B5: main (TestConstBoundaryCondition.cpp:18) +==25207== +==25207== Open file descriptor 113: +==25207== +==25207== +==25207== Open file descriptor 110: +==25207== +==25207== +==25207== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConstBoundaryCondition_valgrind.txt +==25207== +==25207== +==25207== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25207== +==25207== +==25207== +==25207== HEAP SUMMARY: +==25207== in use at exit: 618,258 bytes in 8,238 blocks +==25207== total heap usage: 47,334 allocs, 39,096 frees, 1,338,384,947 bytes allocated +==25207== +==25207== LEAK SUMMARY: +==25207== definitely lost: 0 bytes in 0 blocks +==25207== indirectly lost: 0 bytes in 0 blocks +==25207== possibly lost: 0 bytes in 0 blocks +==25207== still reachable: 24 bytes in 2 blocks +==25207== suppressed: 618,234 bytes in 8,236 blocks +==25207== Reachable blocks (those to which a pointer was found) are not shown. +==25207== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25207== +==25207== For lists of detected and suppressed errors, rerun with: -s +==25207== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt b/log-files/2024-09-23_05-40-48/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt new file mode 100644 index 000000000..b1e44632f --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25344== Memcheck, a memory error detector +==25344== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25344== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25344== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestContinuumMechanicsNeumannBcsAssembler -malloc_debug -malloc_dump -memory_info +==25344== Parent PID: 24048 +==25344== +==25344== +==25344== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25344== Open file descriptor 12: +==25344== at 0x866707D: pipe (pipe.c:29) +==25344== by 0x106D807D: ??? +==25344== by 0xC4EC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25344== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25344== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25344== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25344== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25344== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25344== by 0x132A16: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25344== by 0x12DD0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25344== by 0x130686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25344== by 0x130526: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25344== by 0x130BBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25344== by 0x12C135: main (TestContinuumMechanicsNeumannBcsAssembler.cpp:19) +==25344== +==25344== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25344== at 0x866BA1C: __open_nocancel (open64_nocancel.c:39) +==25344== by 0x85EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25344== by 0x7EBC822: ??? +==25344== by 0x7EBC96F: ??? +==25344== by 0xC5916DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25344== by 0xC591938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25344== by 0xC547922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25344== by 0xC4EC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25344== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25344== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25344== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25344== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25344== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25344== by 0x132A16: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25344== by 0x12DD0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25344== by 0x130686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25344== by 0x130526: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25344== by 0x130BBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25344== by 0x12C135: main (TestContinuumMechanicsNeumannBcsAssembler.cpp:19) +==25344== +==25344== Open file descriptor 113: +==25344== +==25344== +==25344== Open file descriptor 110: +==25344== +==25344== +==25344== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt +==25344== +==25344== +==25344== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25344== +==25344== +==25344== +==25344== HEAP SUMMARY: +==25344== in use at exit: 618,274 bytes in 8,238 blocks +==25344== total heap usage: 48,485 allocs, 40,247 frees, 1,338,693,062 bytes allocated +==25344== +==25344== LEAK SUMMARY: +==25344== definitely lost: 0 bytes in 0 blocks +==25344== indirectly lost: 0 bytes in 0 blocks +==25344== possibly lost: 0 bytes in 0 blocks +==25344== still reachable: 24 bytes in 2 blocks +==25344== suppressed: 618,250 bytes in 8,236 blocks +==25344== Reachable blocks (those to which a pointer was found) are not shown. +==25344== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25344== +==25344== For lists of detected and suppressed errors, rerun with: -s +==25344== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestContractionModels_valgrind.txt b/log-files/2024-09-23_05-40-48/TestContractionModels_valgrind.txt new file mode 100644 index 000000000..bbbb99fa5 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestContractionModels_valgrind.txt @@ -0,0 +1,73 @@ +==43297== Memcheck, a memory error detector +==43297== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43297== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43297== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestContractionModels -malloc_debug -malloc_dump -memory_info +==43297== Parent PID: 24048 +==43297== +==43297== +==43297== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43297== Open file descriptor 12: +==43297== at 0x9DBF07D: pipe (pipe.c:29) +==43297== by 0x1432407D: ??? +==43297== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43297== by 0x990B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43297== by 0x98A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43297== by 0x8578D38: PetscInitialize (pinit.c:924) +==43297== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43297== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43297== by 0x12263F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43297== by 0x11CBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43297== by 0x11F788: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43297== by 0x11F628: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43297== by 0x11FCBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43297== by 0x11AE95: main (TestContractionModels.cpp:19) +==43297== +==43297== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43297== at 0x9DC3A1C: __open_nocancel (open64_nocancel.c:39) +==43297== by 0x9D47BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43297== by 0x9808822: ??? +==43297== by 0x980896F: ??? +==43297== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43297== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43297== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43297== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43297== by 0x990B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43297== by 0x98A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43297== by 0x8578D38: PetscInitialize (pinit.c:924) +==43297== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43297== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43297== by 0x12263F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43297== by 0x11CBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43297== by 0x11F788: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43297== by 0x11F628: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43297== by 0x11FCBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43297== by 0x11AE95: main (TestContractionModels.cpp:19) +==43297== +==43297== Open file descriptor 113: +==43297== +==43297== +==43297== Open file descriptor 110: +==43297== +==43297== +==43297== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestContractionModels_valgrind.txt +==43297== +==43297== +==43297== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43297== +==43297== +==43297== +==43297== HEAP SUMMARY: +==43297== in use at exit: 618,265 bytes in 8,234 blocks +==43297== total heap usage: 4,643,675 allocs, 4,635,441 frees, 1,548,568,519 bytes allocated +==43297== +==43297== LEAK SUMMARY: +==43297== definitely lost: 0 bytes in 0 blocks +==43297== indirectly lost: 0 bytes in 0 blocks +==43297== possibly lost: 0 bytes in 0 blocks +==43297== still reachable: 24 bytes in 2 blocks +==43297== suppressed: 618,241 bytes in 8,232 blocks +==43297== Reachable blocks (those to which a pointer was found) are not shown. +==43297== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43297== +==43297== For lists of detected and suppressed errors, rerun with: -s +==43297== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestConvergenceTester_valgrind.txt b/log-files/2024-09-23_05-40-48/TestConvergenceTester_valgrind.txt new file mode 100644 index 000000000..3945e0802 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestConvergenceTester_valgrind.txt @@ -0,0 +1,73 @@ +==41356== Memcheck, a memory error detector +==41356== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41356== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41356== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestConvergenceTester -malloc_debug -malloc_dump -memory_info +==41356== Parent PID: 24048 +==41356== +==41356== +==41356== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41356== Open file descriptor 12: +==41356== at 0xAC4707D: pipe (pipe.c:29) +==41356== by 0x1432407D: ??? +==41356== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41356== by 0xC342418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41356== by 0xC2DBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41356== by 0xAFD2D38: PetscInitialize (pinit.c:924) +==41356== by 0xA4471D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41356== by 0xA447227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41356== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41356== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41356== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41356== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41356== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41356== by 0x11B5F5: main (TestConvergenceTester.cpp:18) +==41356== +==41356== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41356== at 0xAC4BA1C: __open_nocancel (open64_nocancel.c:39) +==41356== by 0xABCFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41356== by 0xA482822: ??? +==41356== by 0xA48296F: ??? +==41356== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41356== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41356== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41356== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41356== by 0xC342418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41356== by 0xC2DBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41356== by 0xAFD2D38: PetscInitialize (pinit.c:924) +==41356== by 0xA4471D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41356== by 0xA447227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41356== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41356== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41356== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41356== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41356== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41356== by 0x11B5F5: main (TestConvergenceTester.cpp:18) +==41356== +==41356== Open file descriptor 113: +==41356== +==41356== +==41356== Open file descriptor 110: +==41356== +==41356== +==41356== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConvergenceTester_valgrind.txt +==41356== +==41356== +==41356== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41356== +==41356== +==41356== +==41356== HEAP SUMMARY: +==41356== in use at exit: 618,818 bytes in 8,248 blocks +==41356== total heap usage: 1,810,242 allocs, 1,801,994 frees, 1,914,182,856 bytes allocated +==41356== +==41356== LEAK SUMMARY: +==41356== definitely lost: 0 bytes in 0 blocks +==41356== indirectly lost: 0 bytes in 0 blocks +==41356== possibly lost: 0 bytes in 0 blocks +==41356== still reachable: 24 bytes in 2 blocks +==41356== suppressed: 618,794 bytes in 8,246 blocks +==41356== Reachable blocks (those to which a pointer was found) are not shown. +==41356== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41356== +==41356== For lists of detected and suppressed errors, rerun with: -s +==41356== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 121 from 38) diff --git a/log-files/2024-09-23_05-40-48/TestCoupledCableTestProblem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCoupledCableTestProblem_valgrind.txt new file mode 100644 index 000000000..3e493e968 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCoupledCableTestProblem_valgrind.txt @@ -0,0 +1,73 @@ +==25049== Memcheck, a memory error detector +==25049== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25049== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25049== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestCoupledCableTestProblem -malloc_debug -malloc_dump -memory_info +==25049== Parent PID: 24048 +==25049== +==25049== +==25049== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25049== Open file descriptor 12: +==25049== at 0x84E707D: pipe (pipe.c:29) +==25049== by 0x104D507D: ??? +==25049== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25049== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25049== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25049== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25049== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25049== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25049== by 0x13CC22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25049== by 0x137D33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25049== by 0x13A8DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25049== by 0x13A7D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25049== by 0x13ADE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25049== by 0x136535: main (TestCoupledCableTestProblem.cpp:18) +==25049== +==25049== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25049== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25049== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25049== by 0x7D3C822: ??? +==25049== by 0x7D3C96F: ??? +==25049== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25049== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25049== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25049== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25049== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25049== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25049== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25049== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25049== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25049== by 0x13CC22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25049== by 0x137D33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25049== by 0x13A8DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25049== by 0x13A7D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25049== by 0x13ADE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25049== by 0x136535: main (TestCoupledCableTestProblem.cpp:18) +==25049== +==25049== Open file descriptor 113: +==25049== +==25049== +==25049== Open file descriptor 110: +==25049== +==25049== +==25049== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCoupledCableTestProblem_valgrind.txt +==25049== +==25049== +==25049== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25049== +==25049== +==25049== +==25049== HEAP SUMMARY: +==25049== in use at exit: 618,258 bytes in 8,238 blocks +==25049== total heap usage: 501,736 allocs, 493,498 frees, 1,359,093,857 bytes allocated +==25049== +==25049== LEAK SUMMARY: +==25049== definitely lost: 0 bytes in 0 blocks +==25049== indirectly lost: 0 bytes in 0 blocks +==25049== possibly lost: 0 bytes in 0 blocks +==25049== still reachable: 24 bytes in 2 blocks +==25049== suppressed: 618,234 bytes in 8,236 blocks +==25049== Reachable blocks (those to which a pointer was found) are not shown. +==25049== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25049== +==25049== For lists of detected and suppressed errors, rerun with: -s +==25049== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt new file mode 100644 index 000000000..27185ec2b --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39791== Memcheck, a memory error detector +==39791== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39791== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39791== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial -malloc_debug -malloc_dump -memory_info +==39791== Parent PID: 24048 +==39791== +==39791== +==39791== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39791== Open file descriptor 12: +==39791== at 0x10CF207D: pipe (pipe.c:29) +==39791== by 0x196AD07D: ??? +==39791== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39791== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39791== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39791== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39791== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39791== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39791== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39791== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39791== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39791== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39791== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39791== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) +==39791== +==39791== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39791== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==39791== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39791== by 0xF137822: ??? +==39791== by 0xF13796F: ??? +==39791== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39791== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39791== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39791== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39791== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39791== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39791== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39791== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39791== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39791== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39791== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39791== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39791== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39791== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39791== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) +==39791== +==39791== Open file descriptor 113: +==39791== +==39791== +==39791== Open file descriptor 110: +==39791== +==39791== +==39791== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt +==39791== +==39791== +==39791== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39791== +==39791== +==39791== +==39791== HEAP SUMMARY: +==39791== in use at exit: 618,354 bytes in 8,239 blocks +==39791== total heap usage: 514,148 allocs, 505,909 frees, 1,651,566,738 bytes allocated +==39791== +==39791== LEAK SUMMARY: +==39791== definitely lost: 0 bytes in 0 blocks +==39791== indirectly lost: 0 bytes in 0 blocks +==39791== possibly lost: 0 bytes in 0 blocks +==39791== still reachable: 56 bytes in 3 blocks +==39791== suppressed: 618,298 bytes in 8,236 blocks +==39791== Reachable blocks (those to which a pointer was found) are not shown. +==39791== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39791== +==39791== For lists of detected and suppressed errors, rerun with: -s +==39791== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt new file mode 100644 index 000000000..40f2c9a88 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39843== Memcheck, a memory error detector +==39843== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39843== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39843== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellCycleModelTutorial -malloc_debug -malloc_dump -memory_info +==39843== Parent PID: 24048 +==39843== +==39843== +==39843== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39843== Open file descriptor 12: +==39843== at 0x10DD907D: pipe (pipe.c:29) +==39843== by 0x196AD07D: ??? +==39843== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39843== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39843== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39843== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39843== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39843== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39843== by 0x2258F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39843== by 0x21F2AB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39843== by 0x222B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39843== by 0x222A01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39843== by 0x223097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39843== by 0x21BBD5: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19) +==39843== +==39843== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39843== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==39843== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39843== by 0xF137822: ??? +==39843== by 0xF13796F: ??? +==39843== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39843== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39843== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39843== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39843== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39843== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39843== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39843== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39843== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39843== by 0x2258F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39843== by 0x21F2AB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39843== by 0x222B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39843== by 0x222A01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39843== by 0x223097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39843== by 0x21BBD5: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19) +==39843== +==39843== Open file descriptor 113: +==39843== +==39843== +==39843== Open file descriptor 110: +==39843== +==39843== +==39843== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt +==39843== +==39843== +==39843== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39843== +==39843== +==39843== +==39843== HEAP SUMMARY: +==39843== in use at exit: 618,281 bytes in 8,235 blocks +==39843== total heap usage: 8,976,909 allocs, 8,968,674 frees, 2,183,736,217 bytes allocated +==39843== +==39843== LEAK SUMMARY: +==39843== definitely lost: 0 bytes in 0 blocks +==39843== indirectly lost: 0 bytes in 0 blocks +==39843== possibly lost: 0 bytes in 0 blocks +==39843== still reachable: 56 bytes in 3 blocks +==39843== suppressed: 618,225 bytes in 8,232 blocks +==39843== Reachable blocks (those to which a pointer was found) are not shown. +==39843== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39843== +==39843== For lists of detected and suppressed errors, rerun with: -s +==39843== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt new file mode 100644 index 000000000..5db76f3c9 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39851== Memcheck, a memory error detector +==39851== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39851== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39851== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellKillerTutorial -malloc_debug -malloc_dump -memory_info +==39851== Parent PID: 24048 +==39851== +==39851== +==39851== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39851== Open file descriptor 12: +==39851== at 0x10DD907D: pipe (pipe.c:29) +==39851== by 0x196AD07D: ??? +==39851== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39851== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39851== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39851== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39851== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39851== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39851== by 0x141179: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39851== by 0x13BF3F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39851== by 0x13E6FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39851== by 0x13E5F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39851== by 0x13EC09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39851== by 0x13A735: main (TestCreatingAndUsingANewCellKillerTutorial.cpp:18) +==39851== +==39851== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39851== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==39851== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39851== by 0xF137822: ??? +==39851== by 0xF13796F: ??? +==39851== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39851== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39851== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39851== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39851== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39851== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39851== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39851== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39851== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39851== by 0x141179: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39851== by 0x13BF3F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39851== by 0x13E6FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39851== by 0x13E5F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39851== by 0x13EC09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39851== by 0x13A735: main (TestCreatingAndUsingANewCellKillerTutorial.cpp:18) +==39851== +==39851== Open file descriptor 113: +==39851== +==39851== +==39851== Open file descriptor 110: +==39851== +==39851== +==39851== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt +==39851== +==39851== +==39851== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39851== +==39851== +==39851== +==39851== HEAP SUMMARY: +==39851== in use at exit: 618,281 bytes in 8,235 blocks +==39851== total heap usage: 2,717,563 allocs, 2,709,328 frees, 1,507,789,487 bytes allocated +==39851== +==39851== LEAK SUMMARY: +==39851== definitely lost: 0 bytes in 0 blocks +==39851== indirectly lost: 0 bytes in 0 blocks +==39851== possibly lost: 0 bytes in 0 blocks +==39851== still reachable: 56 bytes in 3 blocks +==39851== suppressed: 618,225 bytes in 8,232 blocks +==39851== Reachable blocks (those to which a pointer was found) are not shown. +==39851== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39851== +==39851== For lists of detected and suppressed errors, rerun with: -s +==39851== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt new file mode 100644 index 000000000..a460ef687 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39862== Memcheck, a memory error detector +==39862== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39862== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39862== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellMutationStateTutorial -malloc_debug -malloc_dump -memory_info +==39862== Parent PID: 24048 +==39862== +==39862== +==39862== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39862== Open file descriptor 12: +==39862== at 0x10CF207D: pipe (pipe.c:29) +==39862== by 0x196AD07D: ??? +==39862== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39862== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39862== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39862== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39862== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39862== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39862== by 0x149987: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39862== by 0x1442D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39862== by 0x146FD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39862== by 0x146E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39862== by 0x147509: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39862== by 0x1426F5: main (TestCreatingAndUsingANewCellMutationStateTutorial.cpp:19) +==39862== +==39862== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39862== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==39862== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39862== by 0xF137822: ??? +==39862== by 0xF13796F: ??? +==39862== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39862== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39862== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39862== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39862== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39862== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39862== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39862== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39862== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39862== by 0x149987: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39862== by 0x1442D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39862== by 0x146FD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39862== by 0x146E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39862== by 0x147509: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39862== by 0x1426F5: main (TestCreatingAndUsingANewCellMutationStateTutorial.cpp:19) +==39862== +==39862== Open file descriptor 113: +==39862== +==39862== +==39862== Open file descriptor 110: +==39862== +==39862== +==39862== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt +==39862== +==39862== +==39862== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39862== +==39862== +==39862== +==39862== HEAP SUMMARY: +==39862== in use at exit: 618,281 bytes in 8,235 blocks +==39862== total heap usage: 4,262,897 allocs, 4,254,662 frees, 1,898,477,352 bytes allocated +==39862== +==39862== LEAK SUMMARY: +==39862== definitely lost: 0 bytes in 0 blocks +==39862== indirectly lost: 0 bytes in 0 blocks +==39862== possibly lost: 0 bytes in 0 blocks +==39862== still reachable: 56 bytes in 3 blocks +==39862== suppressed: 618,225 bytes in 8,232 blocks +==39862== Reachable blocks (those to which a pointer was found) are not shown. +==39862== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39862== +==39862== For lists of detected and suppressed errors, rerun with: -s +==39862== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt new file mode 100644 index 000000000..f2cb1923e --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39933== Memcheck, a memory error detector +==39933== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39933== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39933== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial -malloc_debug -malloc_dump -memory_info +==39933== Parent PID: 24048 +==39933== +==39933== +==39933== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39933== Open file descriptor 12: +==39933== at 0x10CF207D: pipe (pipe.c:29) +==39933== by 0x196AD07D: ??? +==39933== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39933== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39933== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39933== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39933== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39933== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39933== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39933== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39933== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39933== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39933== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39933== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) +==39933== +==39933== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39933== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==39933== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39933== by 0xF137822: ??? +==39933== by 0xF13796F: ??? +==39933== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39933== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39933== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39933== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39933== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39933== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39933== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39933== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39933== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39933== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39933== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39933== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39933== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39933== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39933== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) +==39933== +==39933== Open file descriptor 113: +==39933== +==39933== +==39933== Open file descriptor 110: +==39933== +==39933== +==39933== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt +==39933== +==39933== +==39933== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39933== +==39933== +==39933== +==39933== HEAP SUMMARY: +==39933== in use at exit: 618,354 bytes in 8,239 blocks +==39933== total heap usage: 426,443 allocs, 418,204 frees, 1,393,460,717 bytes allocated +==39933== +==39933== LEAK SUMMARY: +==39933== definitely lost: 0 bytes in 0 blocks +==39933== indirectly lost: 0 bytes in 0 blocks +==39933== possibly lost: 0 bytes in 0 blocks +==39933== still reachable: 56 bytes in 3 blocks +==39933== suppressed: 618,298 bytes in 8,236 blocks +==39933== Reachable blocks (those to which a pointer was found) are not shown. +==39933== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39933== +==39933== For lists of detected and suppressed errors, rerun with: -s +==39933== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt new file mode 100644 index 000000000..9ed754bb9 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39965== Memcheck, a memory error detector +==39965== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39965== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39965== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellPropertyTutorial -malloc_debug -malloc_dump -memory_info +==39965== Parent PID: 24048 +==39965== +==39965== +==39965== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39965== Open file descriptor 12: +==39965== at 0x10CF207D: pipe (pipe.c:29) +==39965== by 0x196AD07D: ??? +==39965== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39965== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39965== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39965== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39965== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39965== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39965== by 0x1502FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39965== by 0x14A5F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39965== by 0x14D664: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39965== by 0x14D504: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39965== by 0x14DB9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39965== by 0x148A15: main (TestCreatingAndUsingANewCellPropertyTutorial.cpp:19) +==39965== +==39965== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39965== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==39965== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39965== by 0xF137822: ??? +==39965== by 0xF13796F: ??? +==39965== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39965== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39965== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39965== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39965== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39965== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39965== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39965== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39965== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39965== by 0x1502FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39965== by 0x14A5F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39965== by 0x14D664: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39965== by 0x14D504: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39965== by 0x14DB9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39965== by 0x148A15: main (TestCreatingAndUsingANewCellPropertyTutorial.cpp:19) +==39965== +==39965== Open file descriptor 113: +==39965== +==39965== +==39965== Open file descriptor 110: +==39965== +==39965== +==39965== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt +==39965== +==39965== +==39965== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39965== +==39965== +==39965== +==39965== HEAP SUMMARY: +==39965== in use at exit: 618,281 bytes in 8,235 blocks +==39965== total heap usage: 2,410,740 allocs, 2,402,505 frees, 1,556,333,211 bytes allocated +==39965== +==39965== LEAK SUMMARY: +==39965== definitely lost: 0 bytes in 0 blocks +==39965== indirectly lost: 0 bytes in 0 blocks +==39965== possibly lost: 0 bytes in 0 blocks +==39965== still reachable: 56 bytes in 3 blocks +==39965== suppressed: 618,225 bytes in 8,232 blocks +==39965== Reachable blocks (those to which a pointer was found) are not shown. +==39965== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39965== +==39965== For lists of detected and suppressed errors, rerun with: -s +==39965== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewForceTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewForceTutorial_valgrind.txt new file mode 100644 index 000000000..a407c8df2 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewForceTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39982== Memcheck, a memory error detector +==39982== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39982== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39982== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewForceTutorial -malloc_debug -malloc_dump -memory_info +==39982== Parent PID: 24048 +==39982== +==39982== +==39982== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39982== Open file descriptor 12: +==39982== at 0x10DD907D: pipe (pipe.c:29) +==39982== by 0x196AD07D: ??? +==39982== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39982== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39982== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39982== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39982== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39982== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39982== by 0x14368F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39982== by 0x13E09F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39982== by 0x140942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39982== by 0x14083D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39982== by 0x140E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39982== by 0x13C895: main (TestCreatingAndUsingANewForceTutorial.cpp:18) +==39982== +==39982== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39982== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==39982== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39982== by 0xF137822: ??? +==39982== by 0xF13796F: ??? +==39982== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39982== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39982== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39982== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39982== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39982== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39982== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39982== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39982== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39982== by 0x14368F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39982== by 0x13E09F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39982== by 0x140942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39982== by 0x14083D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39982== by 0x140E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39982== by 0x13C895: main (TestCreatingAndUsingANewForceTutorial.cpp:18) +==39982== +==39982== Open file descriptor 113: +==39982== +==39982== +==39982== Open file descriptor 110: +==39982== +==39982== +==39982== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewForceTutorial_valgrind.txt +==39982== +==39982== +==39982== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39982== +==39982== +==39982== +==39982== HEAP SUMMARY: +==39982== in use at exit: 618,354 bytes in 8,239 blocks +==39982== total heap usage: 681,546 allocs, 673,307 frees, 1,549,479,609 bytes allocated +==39982== +==39982== LEAK SUMMARY: +==39982== definitely lost: 0 bytes in 0 blocks +==39982== indirectly lost: 0 bytes in 0 blocks +==39982== possibly lost: 0 bytes in 0 blocks +==39982== still reachable: 56 bytes in 3 blocks +==39982== suppressed: 618,298 bytes in 8,236 blocks +==39982== Reachable blocks (those to which a pointer was found) are not shown. +==39982== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39982== +==39982== For lists of detected and suppressed errors, rerun with: -s +==39982== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt new file mode 100644 index 000000000..dd29807be --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40002== Memcheck, a memory error detector +==40002== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40002== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40002== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewSrnModelTutorial -malloc_debug -malloc_dump -memory_info +==40002== Parent PID: 24048 +==40002== +==40002== +==40002== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40002== Open file descriptor 12: +==40002== at 0x1101B07D: pipe (pipe.c:29) +==40002== by 0x196AB07D: ??? +==40002== by 0x14C6C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40002== by 0x1083C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40002== by 0x107D5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40002== by 0xF4CCD38: PetscInitialize (pinit.c:924) +==40002== by 0xF33E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40002== by 0xF33E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40002== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40002== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40002== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40002== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40002== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40002== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) +==40002== +==40002== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40002== at 0x1101FA1C: __open_nocancel (open64_nocancel.c:39) +==40002== by 0x10FA3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40002== by 0xF379822: ??? +==40002== by 0xF37996F: ??? +==40002== by 0x14D116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40002== by 0x14D11938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40002== by 0x14CC7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40002== by 0x14C6C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40002== by 0x1083C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40002== by 0x107D5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40002== by 0xF4CCD38: PetscInitialize (pinit.c:924) +==40002== by 0xF33E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40002== by 0xF33E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40002== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40002== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40002== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40002== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40002== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40002== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) +==40002== +==40002== Open file descriptor 113: +==40002== +==40002== +==40002== Open file descriptor 110: +==40002== +==40002== +==40002== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt +==40002== +==40002== +==40002== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40002== +==40002== +==40002== +==40002== HEAP SUMMARY: +==40002== in use at exit: 618,281 bytes in 8,235 blocks +==40002== total heap usage: 3,817,498 allocs, 3,809,263 frees, 1,509,499,402 bytes allocated +==40002== +==40002== LEAK SUMMARY: +==40002== definitely lost: 0 bytes in 0 blocks +==40002== indirectly lost: 0 bytes in 0 blocks +==40002== possibly lost: 0 bytes in 0 blocks +==40002== still reachable: 56 bytes in 3 blocks +==40002== suppressed: 618,225 bytes in 8,232 blocks +==40002== Reachable blocks (those to which a pointer was found) are not shown. +==40002== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40002== +==40002== For lists of detected and suppressed errors, rerun with: -s +==40002== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt new file mode 100644 index 000000000..3b4628ce0 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40032== Memcheck, a memory error detector +==40032== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40032== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40032== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingNewCellBasedWritersTutorial -malloc_debug -malloc_dump -memory_info +==40032== Parent PID: 24048 +==40032== +==40032== +==40032== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40032== Open file descriptor 12: +==40032== at 0xF83B07D: pipe (pipe.c:29) +==40032== by 0x196AD07D: ??? +==40032== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40032== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40032== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40032== by 0x10127D38: PetscInitialize (pinit.c:924) +==40032== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40032== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40032== by 0x1B8DC8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40032== by 0x1B2CFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40032== by 0x1B669A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40032== by 0x1B6596: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40032== by 0x1B6BA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40032== by 0x1B14F5: main (TestCreatingAndUsingNewCellBasedWritersTutorial.cpp:18) +==40032== +==40032== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40032== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==40032== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40032== by 0xF137822: ??? +==40032== by 0xF13796F: ??? +==40032== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40032== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40032== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40032== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40032== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40032== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40032== by 0x10127D38: PetscInitialize (pinit.c:924) +==40032== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40032== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40032== by 0x1B8DC8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40032== by 0x1B2CFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40032== by 0x1B669A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40032== by 0x1B6596: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40032== by 0x1B6BA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40032== by 0x1B14F5: main (TestCreatingAndUsingNewCellBasedWritersTutorial.cpp:18) +==40032== +==40032== Open file descriptor 113: +==40032== +==40032== +==40032== Open file descriptor 110: +==40032== +==40032== +==40032== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt +==40032== +==40032== +==40032== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40032== +==40032== +==40032== +==40032== HEAP SUMMARY: +==40032== in use at exit: 618,281 bytes in 8,235 blocks +==40032== total heap usage: 2,243,067 allocs, 2,234,832 frees, 1,577,630,274 bytes allocated +==40032== +==40032== LEAK SUMMARY: +==40032== definitely lost: 0 bytes in 0 blocks +==40032== indirectly lost: 0 bytes in 0 blocks +==40032== possibly lost: 0 bytes in 0 blocks +==40032== still reachable: 56 bytes in 3 blocks +==40032== suppressed: 618,225 bytes in 8,232 blocks +==40032== Reachable blocks (those to which a pointer was found) are not shown. +==40032== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40032== +==40032== For lists of detected and suppressed errors, rerun with: -s +==40032== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestCryptCellsGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCryptCellsGenerator_valgrind.txt new file mode 100644 index 000000000..8c431670e --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCryptCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==40355== Memcheck, a memory error detector +==40355== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40355== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40355== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptCellsGenerator -malloc_debug -malloc_dump -memory_info +==40355== Parent PID: 24048 +==40355== +==40355== +==40355== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40355== Open file descriptor 12: +==40355== at 0x1257007D: pipe (pipe.c:29) +==40355== by 0x1B36D07D: ??? +==40355== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40355== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40355== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40355== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40355== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40355== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40355== by 0x1222A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40355== by 0x11D653: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40355== by 0x11FD06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40355== by 0x11FC01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40355== by 0x120215: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40355== by 0x11BE55: main (TestCryptCellsGenerator.cpp:18) +==40355== +==40355== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40355== at 0x12574A1C: __open_nocancel (open64_nocancel.c:39) +==40355== by 0x124F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40355== by 0x11D75822: ??? +==40355== by 0x11D7596F: ??? +==40355== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40355== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40355== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40355== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40355== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40355== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40355== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40355== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40355== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40355== by 0x1222A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40355== by 0x11D653: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40355== by 0x11FD06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40355== by 0x11FC01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40355== by 0x120215: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40355== by 0x11BE55: main (TestCryptCellsGenerator.cpp:18) +==40355== +==40355== Open file descriptor 113: +==40355== +==40355== +==40355== Open file descriptor 110: +==40355== +==40355== +==40355== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptCellsGenerator_valgrind.txt +==40355== +==40355== +==40355== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40355== +==40355== +==40355== +==40355== HEAP SUMMARY: +==40355== in use at exit: 618,498 bytes in 8,240 blocks +==40355== total heap usage: 87,338 allocs, 79,098 frees, 1,342,272,317 bytes allocated +==40355== +==40355== LEAK SUMMARY: +==40355== definitely lost: 0 bytes in 0 blocks +==40355== indirectly lost: 0 bytes in 0 blocks +==40355== possibly lost: 0 bytes in 0 blocks +==40355== still reachable: 184 bytes in 4 blocks +==40355== suppressed: 618,314 bytes in 8,236 blocks +==40355== Reachable blocks (those to which a pointer was found) are not shown. +==40355== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40355== +==40355== For lists of detected and suppressed errors, rerun with: -s +==40355== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCryptDivisionRules_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCryptDivisionRules_valgrind.txt new file mode 100644 index 000000000..04f7c0977 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCryptDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==40507== Memcheck, a memory error detector +==40507== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40507== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40507== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptDivisionRules -malloc_debug -malloc_dump -memory_info +==40507== Parent PID: 24048 +==40507== +==40507== +==40507== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40507== Open file descriptor 12: +==40507== at 0x125B207D: pipe (pipe.c:29) +==40507== by 0x1B36D07D: ??? +==40507== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40507== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40507== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40507== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40507== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40507== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40507== by 0x15D2DD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40507== by 0x15795D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40507== by 0x15A6A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40507== by 0x15A542: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40507== by 0x15ABD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40507== by 0x155D85: main (TestCryptDivisionRules.cpp:19) +==40507== +==40507== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40507== at 0x125B6A1C: __open_nocancel (open64_nocancel.c:39) +==40507== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40507== by 0x109F7822: ??? +==40507== by 0x109F796F: ??? +==40507== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40507== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40507== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40507== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40507== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40507== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40507== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40507== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40507== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40507== by 0x15D2DD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40507== by 0x15795D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40507== by 0x15A6A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40507== by 0x15A542: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40507== by 0x15ABD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40507== by 0x155D85: main (TestCryptDivisionRules.cpp:19) +==40507== +==40507== Open file descriptor 113: +==40507== +==40507== +==40507== Open file descriptor 110: +==40507== +==40507== +==40507== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptDivisionRules_valgrind.txt +==40507== +==40507== +==40507== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40507== +==40507== +==40507== +==40507== HEAP SUMMARY: +==40507== in use at exit: 618,386 bytes in 8,240 blocks +==40507== total heap usage: 56,685 allocs, 48,445 frees, 1,339,375,735 bytes allocated +==40507== +==40507== LEAK SUMMARY: +==40507== definitely lost: 0 bytes in 0 blocks +==40507== indirectly lost: 0 bytes in 0 blocks +==40507== possibly lost: 0 bytes in 0 blocks +==40507== still reachable: 72 bytes in 4 blocks +==40507== suppressed: 618,314 bytes in 8,236 blocks +==40507== Reachable blocks (those to which a pointer was found) are not shown. +==40507== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40507== +==40507== For lists of detected and suppressed errors, rerun with: -s +==40507== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCryptProjectionForce_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCryptProjectionForce_valgrind.txt new file mode 100644 index 000000000..64f03a3fb --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCryptProjectionForce_valgrind.txt @@ -0,0 +1,73 @@ +==40408== Memcheck, a memory error detector +==40408== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40408== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40408== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptProjectionForce -malloc_debug -malloc_dump -memory_info +==40408== Parent PID: 24048 +==40408== +==40408== +==40408== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40408== Open file descriptor 12: +==40408== at 0x111E407D: pipe (pipe.c:29) +==40408== by 0x1B36F07D: ??? +==40408== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40408== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40408== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40408== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40408== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40408== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40408== by 0x162A3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40408== by 0x15AE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40408== by 0x15DF5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40408== by 0x15DDFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40408== by 0x15E491: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40408== by 0x159295: main (TestCryptProjectionForce.cpp:19) +==40408== +==40408== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40408== at 0x111E8A1C: __open_nocancel (open64_nocancel.c:39) +==40408== by 0x1116CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40408== by 0x109F7822: ??? +==40408== by 0x109F796F: ??? +==40408== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40408== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40408== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40408== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40408== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40408== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40408== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40408== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40408== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40408== by 0x162A3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40408== by 0x15AE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40408== by 0x15DF5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40408== by 0x15DDFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40408== by 0x15E491: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40408== by 0x159295: main (TestCryptProjectionForce.cpp:19) +==40408== +==40408== Open file descriptor 113: +==40408== +==40408== +==40408== Open file descriptor 110: +==40408== +==40408== +==40408== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptProjectionForce_valgrind.txt +==40408== +==40408== +==40408== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40408== +==40408== +==40408== +==40408== HEAP SUMMARY: +==40408== in use at exit: 618,450 bytes in 8,240 blocks +==40408== total heap usage: 88,281 allocs, 80,041 frees, 1,341,616,969 bytes allocated +==40408== +==40408== LEAK SUMMARY: +==40408== definitely lost: 0 bytes in 0 blocks +==40408== indirectly lost: 0 bytes in 0 blocks +==40408== possibly lost: 0 bytes in 0 blocks +==40408== still reachable: 136 bytes in 4 blocks +==40408== suppressed: 618,314 bytes in 8,236 blocks +==40408== Reachable blocks (those to which a pointer was found) are not shown. +==40408== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40408== +==40408== For lists of detected and suppressed errors, rerun with: -s +==40408== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCryptProjectionStatistics_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCryptProjectionStatistics_valgrind.txt new file mode 100644 index 000000000..3d11c0bb2 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCryptProjectionStatistics_valgrind.txt @@ -0,0 +1,73 @@ +==40815== Memcheck, a memory error detector +==40815== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40815== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40815== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptProjectionStatistics -malloc_debug -malloc_dump -memory_info +==40815== Parent PID: 24048 +==40815== +==40815== +==40815== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40815== Open file descriptor 12: +==40815== at 0x1265707D: pipe (pipe.c:29) +==40815== by 0x1B36D07D: ??? +==40815== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40815== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40815== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40815== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40815== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40815== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40815== by 0x128443: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40815== by 0x123753: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40815== by 0x125C6C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40815== by 0x125B67: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40815== by 0x12617B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40815== by 0x121F55: main (TestCryptProjectionStatistics.cpp:18) +==40815== +==40815== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40815== at 0x1265BA1C: __open_nocancel (open64_nocancel.c:39) +==40815== by 0x125DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40815== by 0x11D75822: ??? +==40815== by 0x11D7596F: ??? +==40815== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40815== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40815== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40815== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40815== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40815== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40815== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40815== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40815== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40815== by 0x128443: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40815== by 0x123753: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40815== by 0x125C6C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40815== by 0x125B67: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40815== by 0x12617B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40815== by 0x121F55: main (TestCryptProjectionStatistics.cpp:18) +==40815== +==40815== Open file descriptor 113: +==40815== +==40815== +==40815== Open file descriptor 110: +==40815== +==40815== +==40815== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptProjectionStatistics_valgrind.txt +==40815== +==40815== +==40815== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40815== +==40815== +==40815== +==40815== HEAP SUMMARY: +==40815== in use at exit: 618,370 bytes in 8,239 blocks +==40815== total heap usage: 1,083,853 allocs, 1,075,614 frees, 1,401,239,845 bytes allocated +==40815== +==40815== LEAK SUMMARY: +==40815== definitely lost: 0 bytes in 0 blocks +==40815== indirectly lost: 0 bytes in 0 blocks +==40815== possibly lost: 0 bytes in 0 blocks +==40815== still reachable: 56 bytes in 3 blocks +==40815== suppressed: 618,314 bytes in 8,236 blocks +==40815== Reachable blocks (those to which a pointer was found) are not shown. +==40815== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40815== +==40815== For lists of detected and suppressed errors, rerun with: -s +==40815== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCryptSimulation1d_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCryptSimulation1d_valgrind.txt new file mode 100644 index 000000000..9ada44d49 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCryptSimulation1d_valgrind.txt @@ -0,0 +1,73 @@ +==40558== Memcheck, a memory error detector +==40558== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40558== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40558== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation1d -malloc_debug -malloc_dump -memory_info +==40558== Parent PID: 24048 +==40558== +==40558== +==40558== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40558== Open file descriptor 12: +==40558== at 0x125B207D: pipe (pipe.c:29) +==40558== by 0x1B36D07D: ??? +==40558== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40558== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40558== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40558== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40558== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40558== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40558== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40558== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40558== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40558== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40558== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40558== by 0x21B395: main (TestCryptSimulation1d.cpp:18) +==40558== +==40558== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40558== at 0x125B6A1C: __open_nocancel (open64_nocancel.c:39) +==40558== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40558== by 0x109F7822: ??? +==40558== by 0x109F796F: ??? +==40558== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40558== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40558== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40558== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40558== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40558== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40558== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40558== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40558== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40558== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40558== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40558== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40558== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40558== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40558== by 0x21B395: main (TestCryptSimulation1d.cpp:18) +==40558== +==40558== Open file descriptor 113: +==40558== +==40558== +==40558== Open file descriptor 110: +==40558== +==40558== +==40558== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation1d_valgrind.txt +==40558== +==40558== +==40558== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40558== +==40558== +==40558== +==40558== HEAP SUMMARY: +==40558== in use at exit: 618,297 bytes in 8,235 blocks +==40558== total heap usage: 4,119,325 allocs, 4,111,090 frees, 1,972,574,237 bytes allocated +==40558== +==40558== LEAK SUMMARY: +==40558== definitely lost: 0 bytes in 0 blocks +==40558== indirectly lost: 0 bytes in 0 blocks +==40558== possibly lost: 0 bytes in 0 blocks +==40558== still reachable: 56 bytes in 3 blocks +==40558== suppressed: 618,241 bytes in 8,232 blocks +==40558== Reachable blocks (those to which a pointer was found) are not shown. +==40558== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40558== +==40558== For lists of detected and suppressed errors, rerun with: -s +==40558== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..63dd98345 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==40604== Memcheck, a memory error detector +==40604== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40604== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40604== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==40604== Parent PID: 24048 +==40604== +==40604== +==40604== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40604== Open file descriptor 12: +==40604== at 0x111E407D: pipe (pipe.c:29) +==40604== by 0x1B36F07D: ??? +==40604== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40604== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40604== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40604== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40604== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40604== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40604== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40604== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40604== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40604== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40604== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40604== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) +==40604== +==40604== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40604== at 0x111E8A1C: __open_nocancel (open64_nocancel.c:39) +==40604== by 0x1116CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40604== by 0x109F7822: ??? +==40604== by 0x109F796F: ??? +==40604== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40604== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40604== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40604== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40604== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40604== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40604== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40604== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40604== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40604== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40604== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40604== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40604== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40604== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40604== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) +==40604== +==40604== Open file descriptor 113: +==40604== +==40604== +==40604== Open file descriptor 110: +==40604== +==40604== +==40604== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt +==40604== +==40604== +==40604== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40604== +==40604== +==40604== +==40604== HEAP SUMMARY: +==40604== in use at exit: 618,297 bytes in 8,235 blocks +==40604== total heap usage: 6,308,303 allocs, 6,300,068 frees, 2,056,531,333 bytes allocated +==40604== +==40604== LEAK SUMMARY: +==40604== definitely lost: 0 bytes in 0 blocks +==40604== indirectly lost: 0 bytes in 0 blocks +==40604== possibly lost: 0 bytes in 0 blocks +==40604== still reachable: 56 bytes in 3 blocks +==40604== suppressed: 618,241 bytes in 8,232 blocks +==40604== Reachable blocks (those to which a pointer was found) are not shown. +==40604== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40604== +==40604== For lists of detected and suppressed errors, rerun with: -s +==40604== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..65260a489 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==40611== Memcheck, a memory error detector +==40611== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40611== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40611== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==40611== Parent PID: 24048 +==40611== +==40611== +==40611== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40611== Open file descriptor 12: +==40611== at 0x125B207D: pipe (pipe.c:29) +==40611== by 0x1B36D07D: ??? +==40611== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40611== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40611== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40611== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40611== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40611== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40611== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40611== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40611== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40611== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40611== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40611== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) +==40611== +==40611== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40611== at 0x125B6A1C: __open_nocancel (open64_nocancel.c:39) +==40611== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40611== by 0x109F7822: ??? +==40611== by 0x109F796F: ??? +==40611== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40611== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40611== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40611== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40611== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40611== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40611== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40611== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40611== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40611== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40611== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40611== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40611== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40611== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40611== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) +==40611== +==40611== Open file descriptor 113: +==40611== +==40611== +==40611== Open file descriptor 110: +==40611== +==40611== +==40611== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt +==40611== +==40611== +==40611== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40611== +==40611== +==40611== +==40611== HEAP SUMMARY: +==40611== in use at exit: 618,297 bytes in 8,235 blocks +==40611== total heap usage: 3,713,951 allocs, 3,705,716 frees, 1,620,332,486 bytes allocated +==40611== +==40611== LEAK SUMMARY: +==40611== definitely lost: 0 bytes in 0 blocks +==40611== indirectly lost: 0 bytes in 0 blocks +==40611== possibly lost: 0 bytes in 0 blocks +==40611== still reachable: 56 bytes in 3 blocks +==40611== suppressed: 618,241 bytes in 8,232 blocks +==40611== Reachable blocks (those to which a pointer was found) are not shown. +==40611== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40611== +==40611== For lists of detected and suppressed errors, rerun with: -s +==40611== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestCryptSimulationBoundaryCondition_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCryptSimulationBoundaryCondition_valgrind.txt new file mode 100644 index 000000000..e8d7fb974 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCryptSimulationBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==40508== Memcheck, a memory error detector +==40508== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40508== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40508== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulationBoundaryCondition -malloc_debug -malloc_dump -memory_info +==40508== Parent PID: 24048 +==40508== +==40508== +==40508== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40508== Open file descriptor 12: +==40508== at 0x125B207D: pipe (pipe.c:29) +==40508== by 0x1B36D07D: ??? +==40508== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40508== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40508== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40508== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40508== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40508== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40508== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40508== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40508== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40508== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40508== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40508== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) +==40508== +==40508== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40508== at 0x125B6A1C: __open_nocancel (open64_nocancel.c:39) +==40508== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40508== by 0x109F7822: ??? +==40508== by 0x109F796F: ??? +==40508== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40508== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40508== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40508== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40508== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40508== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40508== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40508== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40508== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40508== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40508== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40508== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40508== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40508== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40508== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) +==40508== +==40508== Open file descriptor 113: +==40508== +==40508== +==40508== Open file descriptor 110: +==40508== +==40508== +==40508== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulationBoundaryCondition_valgrind.txt +==40508== +==40508== +==40508== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40508== +==40508== +==40508== +==40508== HEAP SUMMARY: +==40508== in use at exit: 618,450 bytes in 8,240 blocks +==40508== total heap usage: 70,032 allocs, 61,792 frees, 1,343,021,458 bytes allocated +==40508== +==40508== LEAK SUMMARY: +==40508== definitely lost: 0 bytes in 0 blocks +==40508== indirectly lost: 0 bytes in 0 blocks +==40508== possibly lost: 0 bytes in 0 blocks +==40508== still reachable: 136 bytes in 4 blocks +==40508== suppressed: 618,314 bytes in 8,236 blocks +==40508== Reachable blocks (those to which a pointer was found) are not shown. +==40508== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40508== +==40508== For lists of detected and suppressed errors, rerun with: -s +==40508== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCryptStatistics_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCryptStatistics_valgrind.txt new file mode 100644 index 000000000..deff3e369 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCryptStatistics_valgrind.txt @@ -0,0 +1,73 @@ +==40881== Memcheck, a memory error detector +==40881== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40881== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40881== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info +==40881== Parent PID: 24048 +==40881== +==40881== +==40881== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40881== Open file descriptor 12: +==40881== at 0x1270C07D: pipe (pipe.c:29) +==40881== by 0x1B36F07D: ??? +==40881== by 0x164D44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40881== by 0x11F2D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40881== by 0x11EC6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40881== by 0x10BBDD38: PetscInitialize (pinit.c:924) +==40881== by 0x10A2F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40881== by 0x10A2F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40881== by 0x1BB797: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40881== by 0x1B35DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40881== by 0x1B6DC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40881== by 0x1B6CBD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40881== by 0x1B72D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40881== by 0x1B1DD5: main (TestCryptStatistics.cpp:18) +==40881== +==40881== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40881== at 0x12710A1C: __open_nocancel (open64_nocancel.c:39) +==40881== by 0x12694BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40881== by 0x10A6A822: ??? +==40881== by 0x10A6A96F: ??? +==40881== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40881== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40881== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40881== by 0x164D42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40881== by 0x11F2D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40881== by 0x11EC6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40881== by 0x10BBDD38: PetscInitialize (pinit.c:924) +==40881== by 0x10A2F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40881== by 0x10A2F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40881== by 0x1BB797: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40881== by 0x1B35DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40881== by 0x1B6DC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40881== by 0x1B6CBD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40881== by 0x1B72D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40881== by 0x1B1DD5: main (TestCryptStatistics.cpp:18) +==40881== +==40881== Open file descriptor 113: +==40881== +==40881== +==40881== Open file descriptor 110: +==40881== +==40881== +==40881== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptStatistics_valgrind.txt +==40881== +==40881== +==40881== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40881== +==40881== +==40881== +==40881== HEAP SUMMARY: +==40881== in use at exit: 618,265 bytes in 8,234 blocks +==40881== total heap usage: 1,798,659 allocs, 1,790,425 frees, 1,443,890,802 bytes allocated +==40881== +==40881== LEAK SUMMARY: +==40881== definitely lost: 0 bytes in 0 blocks +==40881== indirectly lost: 0 bytes in 0 blocks +==40881== possibly lost: 0 bytes in 0 blocks +==40881== still reachable: 24 bytes in 2 blocks +==40881== suppressed: 618,241 bytes in 8,232 blocks +==40881== Reachable blocks (those to which a pointer was found) are not shown. +==40881== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40881== +==40881== For lists of detected and suppressed errors, rerun with: -s +==40881== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestCvodeAdaptor_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCvodeAdaptor_valgrind.txt new file mode 100644 index 000000000..bdb5509dc --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCvodeAdaptor_valgrind.txt @@ -0,0 +1,73 @@ +==24968== Memcheck, a memory error detector +==24968== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24968== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24968== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestCvodeAdaptor -malloc_debug -malloc_dump -memory_info +==24968== Parent PID: 24048 +==24968== +==24968== +==24968== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24968== Open file descriptor 12: +==24968== at 0x4F5207D: pipe (pipe.c:29) +==24968== by 0xB1E607D: ??? +==24968== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24968== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24968== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24968== by 0x5308D38: PetscInitialize (pinit.c:924) +==24968== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24968== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24968== by 0x126E96: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24968== by 0x1215DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24968== by 0x1243B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24968== by 0x124254: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24968== by 0x1248EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24968== by 0x11F185: main (TestCvodeAdaptor.cpp:19) +==24968== +==24968== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24968== at 0x4F56A1C: __open_nocancel (open64_nocancel.c:39) +==24968== by 0x4EDABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24968== by 0x4B77822: ??? +==24968== by 0x4B7796F: ??? +==24968== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24968== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24968== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24968== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24968== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24968== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24968== by 0x5308D38: PetscInitialize (pinit.c:924) +==24968== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24968== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24968== by 0x126E96: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24968== by 0x1215DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24968== by 0x1243B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24968== by 0x124254: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24968== by 0x1248EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24968== by 0x11F185: main (TestCvodeAdaptor.cpp:19) +==24968== +==24968== Open file descriptor 113: +==24968== +==24968== +==24968== Open file descriptor 110: +==24968== +==24968== +==24968== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeAdaptor_valgrind.txt +==24968== +==24968== +==24968== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24968== +==24968== +==24968== +==24968== HEAP SUMMARY: +==24968== in use at exit: 617,906 bytes in 8,238 blocks +==24968== total heap usage: 49,833 allocs, 41,595 frees, 1,338,663,687 bytes allocated +==24968== +==24968== LEAK SUMMARY: +==24968== definitely lost: 0 bytes in 0 blocks +==24968== indirectly lost: 0 bytes in 0 blocks +==24968== possibly lost: 0 bytes in 0 blocks +==24968== still reachable: 24 bytes in 2 blocks +==24968== suppressed: 617,882 bytes in 8,236 blocks +==24968== Reachable blocks (those to which a pointer was found) are not shown. +==24968== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24968== +==24968== For lists of detected and suppressed errors, rerun with: -s +==24968== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestCvodeCellsWithDataClamp_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCvodeCellsWithDataClamp_valgrind.txt new file mode 100644 index 000000000..5577e3bf2 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCvodeCellsWithDataClamp_valgrind.txt @@ -0,0 +1,73 @@ +==41385== Memcheck, a memory error detector +==41385== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41385== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41385== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeCellsWithDataClamp -malloc_debug -malloc_dump -memory_info +==41385== Parent PID: 24048 +==41385== +==41385== +==41385== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41385== Open file descriptor 12: +==41385== at 0x9D8E07D: pipe (pipe.c:29) +==41385== by 0x1432407D: ??? +==41385== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41385== by 0x98DA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41385== by 0x9873D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41385== by 0x856AD38: PetscInitialize (pinit.c:924) +==41385== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41385== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41385== by 0x12948D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41385== by 0x124351: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41385== by 0x126E16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41385== by 0x126CB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41385== by 0x12734D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41385== by 0x1222A5: main (TestCvodeCellsWithDataClamp.cpp:19) +==41385== +==41385== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41385== at 0x9D92A1C: __open_nocancel (open64_nocancel.c:39) +==41385== by 0x9D16BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41385== by 0x8417822: ??? +==41385== by 0x841796F: ??? +==41385== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41385== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41385== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41385== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41385== by 0x98DA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41385== by 0x9873D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41385== by 0x856AD38: PetscInitialize (pinit.c:924) +==41385== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41385== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41385== by 0x12948D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41385== by 0x124351: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41385== by 0x126E16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41385== by 0x126CB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41385== by 0x12734D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41385== by 0x1222A5: main (TestCvodeCellsWithDataClamp.cpp:19) +==41385== +==41385== Open file descriptor 113: +==41385== +==41385== +==41385== Open file descriptor 110: +==41385== +==41385== +==41385== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeCellsWithDataClamp_valgrind.txt +==41385== +==41385== +==41385== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41385== +==41385== +==41385== +==41385== HEAP SUMMARY: +==41385== in use at exit: 624,620 bytes in 8,243 blocks +==41385== total heap usage: 102,617 allocs, 94,374 frees, 1,481,816,597 bytes allocated +==41385== +==41385== LEAK SUMMARY: +==41385== definitely lost: 0 bytes in 0 blocks +==41385== indirectly lost: 0 bytes in 0 blocks +==41385== possibly lost: 0 bytes in 0 blocks +==41385== still reachable: 6,379 bytes in 11 blocks +==41385== suppressed: 618,241 bytes in 8,232 blocks +==41385== Reachable blocks (those to which a pointer was found) are not shown. +==41385== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41385== +==41385== For lists of detected and suppressed errors, rerun with: -s +==41385== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestCvodeCells_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCvodeCells_valgrind.txt new file mode 100644 index 000000000..be6719579 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCvodeCells_valgrind.txt @@ -0,0 +1,73 @@ +==41384== Memcheck, a memory error detector +==41384== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41384== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41384== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeCells -malloc_debug -malloc_dump -memory_info +==41384== Parent PID: 24048 +==41384== +==41384== +==41384== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41384== Open file descriptor 12: +==41384== at 0x9D1A07D: pipe (pipe.c:29) +==41384== by 0x1432407D: ??? +==41384== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41384== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41384== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41384== by 0x85DDD38: PetscInitialize (pinit.c:924) +==41384== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41384== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41384== by 0x1353CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41384== by 0x12FB8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41384== by 0x132882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41384== by 0x132722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41384== by 0x132DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41384== by 0x12AB65: main (TestCvodeCells.cpp:19) +==41384== +==41384== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41384== at 0x9D1EA1C: __open_nocancel (open64_nocancel.c:39) +==41384== by 0x9CA2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41384== by 0x848A822: ??? +==41384== by 0x848A96F: ??? +==41384== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41384== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41384== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41384== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41384== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41384== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41384== by 0x85DDD38: PetscInitialize (pinit.c:924) +==41384== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41384== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41384== by 0x1353CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41384== by 0x12FB8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41384== by 0x132882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41384== by 0x132722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41384== by 0x132DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41384== by 0x12AB65: main (TestCvodeCells.cpp:19) +==41384== +==41384== Open file descriptor 113: +==41384== +==41384== +==41384== Open file descriptor 110: +==41384== +==41384== +==41384== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeCells_valgrind.txt +==41384== +==41384== +==41384== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41384== +==41384== +==41384== +==41384== HEAP SUMMARY: +==41384== in use at exit: 620,036 bytes in 8,238 blocks +==41384== total heap usage: 231,022 allocs, 222,784 frees, 1,363,913,852 bytes allocated +==41384== +==41384== LEAK SUMMARY: +==41384== definitely lost: 0 bytes in 0 blocks +==41384== indirectly lost: 0 bytes in 0 blocks +==41384== possibly lost: 0 bytes in 0 blocks +==41384== still reachable: 1,795 bytes in 6 blocks +==41384== suppressed: 618,241 bytes in 8,232 blocks +==41384== Reachable blocks (those to which a pointer was found) are not shown. +==41384== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41384== +==41384== For lists of detected and suppressed errors, rerun with: -s +==41384== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestCvodeWithJacobian_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCvodeWithJacobian_valgrind.txt new file mode 100644 index 000000000..03fe34f31 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCvodeWithJacobian_valgrind.txt @@ -0,0 +1,73 @@ +==41599== Memcheck, a memory error detector +==41599== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41599== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41599== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeWithJacobian -malloc_debug -malloc_dump -memory_info +==41599== Parent PID: 24048 +==41599== +==41599== +==41599== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41599== Open file descriptor 12: +==41599== at 0x9C6507D: pipe (pipe.c:29) +==41599== by 0x1432407D: ??? +==41599== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41599== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41599== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41599== by 0x8505D38: PetscInitialize (pinit.c:924) +==41599== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41599== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41599== by 0x117769: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41599== by 0x1133B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41599== by 0x1155A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41599== by 0x11549E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41599== by 0x115AB1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41599== by 0x111BB5: main (TestCvodeWithJacobian.cpp:18) +==41599== +==41599== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41599== at 0x9C69A1C: __open_nocancel (open64_nocancel.c:39) +==41599== by 0x9BEDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41599== by 0x9795822: ??? +==41599== by 0x979596F: ??? +==41599== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41599== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41599== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41599== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41599== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41599== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41599== by 0x8505D38: PetscInitialize (pinit.c:924) +==41599== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41599== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41599== by 0x117769: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41599== by 0x1133B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41599== by 0x1155A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41599== by 0x11549E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41599== by 0x115AB1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41599== by 0x111BB5: main (TestCvodeWithJacobian.cpp:18) +==41599== +==41599== Open file descriptor 113: +==41599== +==41599== +==41599== Open file descriptor 110: +==41599== +==41599== +==41599== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeWithJacobian_valgrind.txt +==41599== +==41599== +==41599== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41599== +==41599== +==41599== +==41599== HEAP SUMMARY: +==41599== in use at exit: 618,265 bytes in 8,234 blocks +==41599== total heap usage: 74,027 allocs, 65,793 frees, 1,342,640,017 bytes allocated +==41599== +==41599== LEAK SUMMARY: +==41599== definitely lost: 0 bytes in 0 blocks +==41599== indirectly lost: 0 bytes in 0 blocks +==41599== possibly lost: 0 bytes in 0 blocks +==41599== still reachable: 24 bytes in 2 blocks +==41599== suppressed: 618,241 bytes in 8,232 blocks +==41599== Reachable blocks (those to which a pointer was found) are not shown. +==41599== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41599== +==41599== For lists of detected and suppressed errors, rerun with: -s +==41599== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestCwd_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCwd_valgrind.txt new file mode 100644 index 000000000..354a411bc --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCwd_valgrind.txt @@ -0,0 +1,73 @@ +==24080== Memcheck, a memory error detector +==24080== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24080== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24080== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCwd -malloc_debug -malloc_dump -memory_info +==24080== Parent PID: 24048 +==24080== +==24080== +==24080== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24080== Open file descriptor 12: +==24080== at 0x616907D: pipe (pipe.c:29) +==24080== by 0xAEA507D: ??? +==24080== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24080== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24080== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24080== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24080== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24080== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24080== by 0x1130E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24080== by 0x10EFB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24080== by 0x1111A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24080== by 0x11109E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24080== by 0x1116B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24080== by 0x10D7B5: main (TestCwd.cpp:18) +==24080== +==24080== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24080== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24080== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24080== by 0x5CB3822: ??? +==24080== by 0x5CB396F: ??? +==24080== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24080== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24080== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24080== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24080== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24080== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24080== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24080== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24080== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24080== by 0x1130E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24080== by 0x10EFB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24080== by 0x1111A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24080== by 0x11109E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24080== by 0x1116B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24080== by 0x10D7B5: main (TestCwd.cpp:18) +==24080== +==24080== Open file descriptor 113: +==24080== +==24080== +==24080== Open file descriptor 110: +==24080== +==24080== +==24080== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCwd_valgrind.txt +==24080== +==24080== +==24080== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24080== +==24080== +==24080== +==24080== HEAP SUMMARY: +==24080== in use at exit: 617,842 bytes in 8,238 blocks +==24080== total heap usage: 44,921 allocs, 36,683 frees, 1,338,165,262 bytes allocated +==24080== +==24080== LEAK SUMMARY: +==24080== definitely lost: 0 bytes in 0 blocks +==24080== indirectly lost: 0 bytes in 0 blocks +==24080== possibly lost: 0 bytes in 0 blocks +==24080== still reachable: 24 bytes in 2 blocks +==24080== suppressed: 617,818 bytes in 8,236 blocks +==24080== Reachable blocks (those to which a pointer was found) are not shown. +==24080== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24080== +==24080== For lists of detected and suppressed errors, rerun with: -s +==24080== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestCylindrical2dMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCylindrical2dMesh_valgrind.txt new file mode 100644 index 000000000..2ee262e3e --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCylindrical2dMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24558== Memcheck, a memory error detector +==24558== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24558== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24558== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dMesh -malloc_debug -malloc_dump -memory_info +==24558== Parent PID: 24048 +==24558== +==24558== +==24558== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24558== Open file descriptor 12: +==24558== at 0x823407D: pipe (pipe.c:29) +==24558== by 0x100C507D: ??? +==24558== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24558== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24558== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24558== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24558== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24558== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24558== by 0x12A575: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24558== by 0x124FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24558== by 0x127D3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24558== by 0x127BDF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24558== by 0x128275: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24558== by 0x123425: main (TestCylindrical2dMesh.cpp:19) +==24558== +==24558== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24558== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24558== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24558== by 0x6590822: ??? +==24558== by 0x659096F: ??? +==24558== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24558== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24558== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24558== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24558== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24558== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24558== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24558== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24558== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24558== by 0x12A575: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24558== by 0x124FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24558== by 0x127D3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24558== by 0x127BDF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24558== by 0x128275: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24558== by 0x123425: main (TestCylindrical2dMesh.cpp:19) +==24558== +==24558== Open file descriptor 113: +==24558== +==24558== +==24558== Open file descriptor 110: +==24558== +==24558== +==24558== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dMesh_valgrind.txt +==24558== +==24558== +==24558== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24558== +==24558== +==24558== +==24558== HEAP SUMMARY: +==24558== in use at exit: 618,226 bytes in 8,238 blocks +==24558== total heap usage: 165,000 allocs, 156,762 frees, 1,356,836,211 bytes allocated +==24558== +==24558== LEAK SUMMARY: +==24558== definitely lost: 0 bytes in 0 blocks +==24558== indirectly lost: 0 bytes in 0 blocks +==24558== possibly lost: 0 bytes in 0 blocks +==24558== still reachable: 24 bytes in 2 blocks +==24558== suppressed: 618,202 bytes in 8,236 blocks +==24558== Reachable blocks (those to which a pointer was found) are not shown. +==24558== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24558== +==24558== For lists of detected and suppressed errors, rerun with: -s +==24558== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestCylindrical2dNodesOnlyMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCylindrical2dNodesOnlyMesh_valgrind.txt new file mode 100644 index 000000000..595161b1a --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCylindrical2dNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24572== Memcheck, a memory error detector +==24572== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24572== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24572== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==24572== Parent PID: 24048 +==24572== +==24572== +==24572== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24572== Open file descriptor 12: +==24572== at 0x6D7D07D: pipe (pipe.c:29) +==24572== by 0x100C507D: ??? +==24572== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24572== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24572== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24572== by 0x7017D38: PetscInitialize (pinit.c:924) +==24572== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24572== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24572== by 0x126F1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24572== by 0x121B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24572== by 0x1248C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24572== by 0x124768: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24572== by 0x124DFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24572== by 0x11FFC5: main (TestCylindrical2dNodesOnlyMesh.cpp:19) +==24572== +==24572== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24572== at 0x6D81A1C: __open_nocancel (open64_nocancel.c:39) +==24572== by 0x6D05BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24572== by 0x6590822: ??? +==24572== by 0x659096F: ??? +==24572== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24572== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24572== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24572== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24572== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24572== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24572== by 0x7017D38: PetscInitialize (pinit.c:924) +==24572== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24572== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24572== by 0x126F1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24572== by 0x121B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24572== by 0x1248C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24572== by 0x124768: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24572== by 0x124DFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24572== by 0x11FFC5: main (TestCylindrical2dNodesOnlyMesh.cpp:19) +==24572== +==24572== Open file descriptor 113: +==24572== +==24572== +==24572== Open file descriptor 110: +==24572== +==24572== +==24572== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dNodesOnlyMesh_valgrind.txt +==24572== +==24572== +==24572== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24572== +==24572== +==24572== +==24572== HEAP SUMMARY: +==24572== in use at exit: 618,226 bytes in 8,238 blocks +==24572== total heap usage: 58,516 allocs, 50,278 frees, 1,341,296,381 bytes allocated +==24572== +==24572== LEAK SUMMARY: +==24572== definitely lost: 0 bytes in 0 blocks +==24572== indirectly lost: 0 bytes in 0 blocks +==24572== possibly lost: 0 bytes in 0 blocks +==24572== still reachable: 24 bytes in 2 blocks +==24572== suppressed: 618,202 bytes in 8,236 blocks +==24572== Reachable blocks (those to which a pointer was found) are not shown. +==24572== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24572== +==24572== For lists of detected and suppressed errors, rerun with: -s +==24572== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestCylindrical2dVertexMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCylindrical2dVertexMesh_valgrind.txt new file mode 100644 index 000000000..f975839a8 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCylindrical2dVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24724== Memcheck, a memory error detector +==24724== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24724== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24724== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dVertexMesh -malloc_debug -malloc_dump -memory_info +==24724== Parent PID: 24048 +==24724== +==24724== +==24724== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24724== Open file descriptor 12: +==24724== at 0x823407D: pipe (pipe.c:29) +==24724== by 0x100C507D: ??? +==24724== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24724== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24724== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24724== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24724== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24724== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24724== by 0x129413: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24724== by 0x123FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24724== by 0x126C38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24724== by 0x126AD9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24724== by 0x12716F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24724== by 0x1223E5: main (TestCylindrical2dVertexMesh.cpp:19) +==24724== +==24724== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24724== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24724== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24724== by 0x6590822: ??? +==24724== by 0x659096F: ??? +==24724== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24724== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24724== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24724== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24724== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24724== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24724== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24724== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24724== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24724== by 0x129413: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24724== by 0x123FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24724== by 0x126C38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24724== by 0x126AD9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24724== by 0x12716F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24724== by 0x1223E5: main (TestCylindrical2dVertexMesh.cpp:19) +==24724== +==24724== Open file descriptor 113: +==24724== +==24724== +==24724== Open file descriptor 110: +==24724== +==24724== +==24724== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dVertexMesh_valgrind.txt +==24724== +==24724== +==24724== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24724== +==24724== +==24724== +==24724== HEAP SUMMARY: +==24724== in use at exit: 618,226 bytes in 8,238 blocks +==24724== total heap usage: 152,183 allocs, 143,945 frees, 1,348,598,652 bytes allocated +==24724== +==24724== LEAK SUMMARY: +==24724== definitely lost: 0 bytes in 0 blocks +==24724== indirectly lost: 0 bytes in 0 blocks +==24724== possibly lost: 0 bytes in 0 blocks +==24724== still reachable: 24 bytes in 2 blocks +==24724== suppressed: 618,202 bytes in 8,236 blocks +==24724== Reachable blocks (those to which a pointer was found) are not shown. +==24724== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24724== +==24724== For lists of detected and suppressed errors, rerun with: -s +==24724== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestCylindricalHoneycombMeshGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCylindricalHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..2c133e07c --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCylindricalHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24573== Memcheck, a memory error detector +==24573== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24573== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24573== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindricalHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24573== Parent PID: 24048 +==24573== +==24573== +==24573== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24573== Open file descriptor 12: +==24573== at 0x810907D: pipe (pipe.c:29) +==24573== by 0x100C307D: ??? +==24573== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24573== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24573== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24573== by 0x667ED38: PetscInitialize (pinit.c:924) +==24573== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24573== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24573== by 0x11A3C5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24573== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24573== by 0x1181AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24573== by 0x11804C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24573== by 0x1186E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24573== by 0x113AF5: main (TestCylindricalHoneycombMeshGenerator.cpp:19) +==24573== +==24573== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24573== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24573== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24573== by 0x790E822: ??? +==24573== by 0x790E96F: ??? +==24573== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24573== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24573== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24573== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24573== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24573== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24573== by 0x667ED38: PetscInitialize (pinit.c:924) +==24573== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24573== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24573== by 0x11A3C5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24573== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24573== by 0x1181AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24573== by 0x11804C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24573== by 0x1186E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24573== by 0x113AF5: main (TestCylindricalHoneycombMeshGenerator.cpp:19) +==24573== +==24573== Open file descriptor 113: +==24573== +==24573== +==24573== Open file descriptor 110: +==24573== +==24573== +==24573== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindricalHoneycombMeshGenerator_valgrind.txt +==24573== +==24573== +==24573== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24573== +==24573== +==24573== +==24573== HEAP SUMMARY: +==24573== in use at exit: 618,226 bytes in 8,238 blocks +==24573== total heap usage: 92,043 allocs, 83,805 frees, 1,341,718,149 bytes allocated +==24573== +==24573== LEAK SUMMARY: +==24573== definitely lost: 0 bytes in 0 blocks +==24573== indirectly lost: 0 bytes in 0 blocks +==24573== possibly lost: 0 bytes in 0 blocks +==24573== still reachable: 24 bytes in 2 blocks +==24573== suppressed: 618,202 bytes in 8,236 blocks +==24573== Reachable blocks (those to which a pointer was found) are not shown. +==24573== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24573== +==24573== For lists of detected and suppressed errors, rerun with: -s +==24573== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..82f0cedb4 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24732== Memcheck, a memory error detector +==24732== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24732== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24732== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindricalHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24732== Parent PID: 24048 +==24732== +==24732== +==24732== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24732== Open file descriptor 12: +==24732== at 0x810907D: pipe (pipe.c:29) +==24732== by 0x100C307D: ??? +==24732== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24732== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24732== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24732== by 0x667ED38: PetscInitialize (pinit.c:924) +==24732== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24732== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24732== by 0x11A15D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24732== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24732== by 0x1162D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24732== by 0x116176: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24732== by 0x11680D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24732== by 0x111D75: main (TestCylindricalHoneycombVertexMeshGenerator.cpp:19) +==24732== +==24732== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24732== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24732== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24732== by 0x790E822: ??? +==24732== by 0x790E96F: ??? +==24732== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24732== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24732== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24732== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24732== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24732== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24732== by 0x667ED38: PetscInitialize (pinit.c:924) +==24732== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24732== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24732== by 0x11A15D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24732== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24732== by 0x1162D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24732== by 0x116176: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24732== by 0x11680D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24732== by 0x111D75: main (TestCylindricalHoneycombVertexMeshGenerator.cpp:19) +==24732== +==24732== Open file descriptor 113: +==24732== +==24732== +==24732== Open file descriptor 110: +==24732== +==24732== +==24732== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt +==24732== +==24732== +==24732== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24732== +==24732== +==24732== +==24732== HEAP SUMMARY: +==24732== in use at exit: 618,226 bytes in 8,238 blocks +==24732== total heap usage: 50,609 allocs, 42,371 frees, 1,338,862,641 bytes allocated +==24732== +==24732== LEAK SUMMARY: +==24732== definitely lost: 0 bytes in 0 blocks +==24732== indirectly lost: 0 bytes in 0 blocks +==24732== possibly lost: 0 bytes in 0 blocks +==24732== still reachable: 24 bytes in 2 blocks +==24732== suppressed: 618,202 bytes in 8,236 blocks +==24732== Reachable blocks (those to which a pointer was found) are not shown. +==24732== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24732== +==24732== For lists of detected and suppressed errors, rerun with: -s +==24732== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestDebug_valgrind.txt b/log-files/2024-09-23_05-40-48/TestDebug_valgrind.txt new file mode 100644 index 000000000..03d679b28 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestDebug_valgrind.txt @@ -0,0 +1,73 @@ +==24105== Memcheck, a memory error detector +==24105== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24105== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24105== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestDebug -malloc_debug -malloc_dump -memory_info +==24105== Parent PID: 24048 +==24105== +==24105== +==24105== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24105== Open file descriptor 12: +==24105== at 0x4CB207D: pipe (pipe.c:29) +==24105== by 0xAEA507D: ??? +==24105== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24105== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24105== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24105== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24105== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24105== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24105== by 0x112F42: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24105== by 0x10EE33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24105== by 0x11100C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24105== by 0x110F08: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24105== by 0x11151B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24105== by 0x10D635: main (TestDebug.cpp:18) +==24105== +==24105== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24105== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24105== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24105== by 0x4935822: ??? +==24105== by 0x493596F: ??? +==24105== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24105== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24105== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24105== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24105== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24105== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24105== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24105== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24105== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24105== by 0x112F42: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24105== by 0x10EE33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24105== by 0x11100C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24105== by 0x110F08: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24105== by 0x11151B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24105== by 0x10D635: main (TestDebug.cpp:18) +==24105== +==24105== Open file descriptor 113: +==24105== +==24105== +==24105== Open file descriptor 110: +==24105== +==24105== +==24105== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDebug_valgrind.txt +==24105== +==24105== +==24105== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24105== +==24105== +==24105== +==24105== HEAP SUMMARY: +==24105== in use at exit: 617,842 bytes in 8,238 blocks +==24105== total heap usage: 44,920 allocs, 36,682 frees, 1,340,566,819 bytes allocated +==24105== +==24105== LEAK SUMMARY: +==24105== definitely lost: 0 bytes in 0 blocks +==24105== indirectly lost: 0 bytes in 0 blocks +==24105== possibly lost: 0 bytes in 0 blocks +==24105== still reachable: 24 bytes in 2 blocks +==24105== suppressed: 617,818 bytes in 8,236 blocks +==24105== Reachable blocks (those to which a pointer was found) are not shown. +==24105== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24105== +==24105== For lists of detected and suppressed errors, rerun with: -s +==24105== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestDeltaNotchModifier_valgrind.txt b/log-files/2024-09-23_05-40-48/TestDeltaNotchModifier_valgrind.txt new file mode 100644 index 000000000..700eab585 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestDeltaNotchModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26289== Memcheck, a memory error detector +==26289== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26289== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26289== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDeltaNotchModifier -malloc_debug -malloc_dump -memory_info +==26289== Parent PID: 24048 +==26289== +==26289== +==26289== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26289== Open file descriptor 12: +==26289== at 0xF83B07D: pipe (pipe.c:29) +==26289== by 0x196AD07D: ??? +==26289== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26289== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26289== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26289== by 0x10127D38: PetscInitialize (pinit.c:924) +==26289== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26289== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26289== by 0x208508: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26289== by 0x1FFF99: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26289== by 0x203992: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26289== by 0x203832: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26289== by 0x203EC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26289== by 0x1FE3B5: main (TestDeltaNotchModifier.cpp:19) +==26289== +==26289== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26289== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==26289== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26289== by 0xF137822: ??? +==26289== by 0xF13796F: ??? +==26289== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26289== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26289== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26289== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26289== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26289== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26289== by 0x10127D38: PetscInitialize (pinit.c:924) +==26289== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26289== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26289== by 0x208508: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26289== by 0x1FFF99: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26289== by 0x203992: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26289== by 0x203832: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26289== by 0x203EC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26289== by 0x1FE3B5: main (TestDeltaNotchModifier.cpp:19) +==26289== +==26289== Open file descriptor 113: +==26289== +==26289== +==26289== Open file descriptor 110: +==26289== +==26289== +==26289== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDeltaNotchModifier_valgrind.txt +==26289== +==26289== +==26289== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26289== +==26289== +==26289== +==26289== HEAP SUMMARY: +==26289== in use at exit: 618,281 bytes in 8,235 blocks +==26289== total heap usage: 5,565,411 allocs, 5,557,176 frees, 8,883,972,681 bytes allocated +==26289== +==26289== LEAK SUMMARY: +==26289== definitely lost: 0 bytes in 0 blocks +==26289== indirectly lost: 0 bytes in 0 blocks +==26289== possibly lost: 0 bytes in 0 blocks +==26289== still reachable: 56 bytes in 3 blocks +==26289== suppressed: 618,225 bytes in 8,232 blocks +==26289== Reachable blocks (those to which a pointer was found) are not shown. +==26289== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26289== +==26289== For lists of detected and suppressed errors, rerun with: -s +==26289== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestDeltaNotchOdeSystem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestDeltaNotchOdeSystem_valgrind.txt new file mode 100644 index 000000000..8f6f536ae --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestDeltaNotchOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25877== Memcheck, a memory error detector +==25877== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25877== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25877== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDeltaNotchOdeSystem -malloc_debug -malloc_dump -memory_info +==25877== Parent PID: 24048 +==25877== +==25877== +==25877== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25877== Open file descriptor 12: +==25877== at 0xEF9407D: pipe (pipe.c:29) +==25877== by 0x196AC07D: ??? +==25877== by 0x13C514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25877== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25877== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25877== by 0xD871D38: PetscInitialize (pinit.c:924) +==25877== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25877== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25877== by 0x123193: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25877== by 0x11E6C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25877== by 0x120CDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25877== by 0x120BD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25877== by 0x1211EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25877== by 0x11CEC5: main (TestDeltaNotchOdeSystem.cpp:18) +==25877== +==25877== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25877== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25877== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25877== by 0xD71E822: ??? +==25877== by 0xD71E96F: ??? +==25877== by 0x13CF66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25877== by 0x13CF6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25877== by 0x13CAC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25877== by 0x13C512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25877== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25877== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25877== by 0xD871D38: PetscInitialize (pinit.c:924) +==25877== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25877== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25877== by 0x123193: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25877== by 0x11E6C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25877== by 0x120CDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25877== by 0x120BD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25877== by 0x1211EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25877== by 0x11CEC5: main (TestDeltaNotchOdeSystem.cpp:18) +==25877== +==25877== Open file descriptor 113: +==25877== +==25877== +==25877== Open file descriptor 110: +==25877== +==25877== +==25877== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDeltaNotchOdeSystem_valgrind.txt +==25877== +==25877== +==25877== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25877== +==25877== +==25877== +==25877== HEAP SUMMARY: +==25877== in use at exit: 618,322 bytes in 8,238 blocks +==25877== total heap usage: 53,415 allocs, 45,177 frees, 1,338,942,557 bytes allocated +==25877== +==25877== LEAK SUMMARY: +==25877== definitely lost: 0 bytes in 0 blocks +==25877== indirectly lost: 0 bytes in 0 blocks +==25877== possibly lost: 0 bytes in 0 blocks +==25877== still reachable: 24 bytes in 2 blocks +==25877== suppressed: 618,298 bytes in 8,236 blocks +==25877== Reachable blocks (those to which a pointer was found) are not shown. +==25877== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25877== +==25877== For lists of detected and suppressed errors, rerun with: -s +==25877== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestDiscreteSystemForceCalculator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestDiscreteSystemForceCalculator_valgrind.txt new file mode 100644 index 000000000..7127dd903 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestDiscreteSystemForceCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==26018== Memcheck, a memory error detector +==26018== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26018== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26018== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDiscreteSystemForceCalculator -malloc_debug -malloc_dump -memory_info +==26018== Parent PID: 24048 +==26018== +==26018== +==26018== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26018== Open file descriptor 12: +==26018== at 0x10CB007D: pipe (pipe.c:29) +==26018== by 0x196AD07D: ??? +==26018== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26018== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26018== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26018== by 0xF225D38: PetscInitialize (pinit.c:924) +==26018== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26018== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26018== by 0x12A32F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26018== by 0x123F2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26018== by 0x1269BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26018== by 0x12685E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26018== by 0x126EF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26018== by 0x122355: main (TestDiscreteSystemForceCalculator.cpp:19) +==26018== +==26018== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26018== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==26018== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26018== by 0x104B5822: ??? +==26018== by 0x104B596F: ??? +==26018== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26018== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26018== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26018== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26018== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26018== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26018== by 0xF225D38: PetscInitialize (pinit.c:924) +==26018== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26018== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26018== by 0x12A32F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26018== by 0x123F2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26018== by 0x1269BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26018== by 0x12685E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26018== by 0x126EF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26018== by 0x122355: main (TestDiscreteSystemForceCalculator.cpp:19) +==26018== +==26018== Open file descriptor 113: +==26018== +==26018== +==26018== Open file descriptor 110: +==26018== +==26018== +==26018== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDiscreteSystemForceCalculator_valgrind.txt +==26018== +==26018== +==26018== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26018== +==26018== +==26018== +==26018== HEAP SUMMARY: +==26018== in use at exit: 618,354 bytes in 8,239 blocks +==26018== total heap usage: 123,058 allocs, 114,819 frees, 1,345,486,216 bytes allocated +==26018== +==26018== LEAK SUMMARY: +==26018== definitely lost: 0 bytes in 0 blocks +==26018== indirectly lost: 0 bytes in 0 blocks +==26018== possibly lost: 0 bytes in 0 blocks +==26018== still reachable: 56 bytes in 3 blocks +==26018== suppressed: 618,298 bytes in 8,236 blocks +==26018== Reachable blocks (those to which a pointer was found) are not shown. +==26018== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26018== +==26018== For lists of detected and suppressed errors, rerun with: -s +==26018== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestDistanceMapCalculator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestDistanceMapCalculator_valgrind.txt new file mode 100644 index 000000000..2fe08b24b --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestDistanceMapCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==24686== Memcheck, a memory error detector +==24686== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24686== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24686== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistanceMapCalculator -malloc_debug -malloc_dump -memory_info +==24686== Parent PID: 24048 +==24686== +==24686== +==24686== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24686== Open file descriptor 12: +==24686== at 0x6D3B07D: pipe (pipe.c:29) +==24686== by 0x100C507D: ??? +==24686== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24686== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24686== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24686== by 0x7017D38: PetscInitialize (pinit.c:924) +==24686== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24686== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24686== by 0x121308: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24686== by 0x11C90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24686== by 0x11F030: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24686== by 0x11EED0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24686== by 0x11F567: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24686== by 0x11AD35: main (TestDistanceMapCalculator.cpp:19) +==24686== +==24686== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24686== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24686== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24686== by 0x6590822: ??? +==24686== by 0x659096F: ??? +==24686== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24686== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24686== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24686== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24686== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24686== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24686== by 0x7017D38: PetscInitialize (pinit.c:924) +==24686== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24686== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24686== by 0x121308: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24686== by 0x11C90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24686== by 0x11F030: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24686== by 0x11EED0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24686== by 0x11F567: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24686== by 0x11AD35: main (TestDistanceMapCalculator.cpp:19) +==24686== +==24686== Open file descriptor 113: +==24686== +==24686== +==24686== Open file descriptor 110: +==24686== +==24686== +==24686== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistanceMapCalculator_valgrind.txt +==24686== +==24686== +==24686== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24686== +==24686== +==24686== +==24686== HEAP SUMMARY: +==24686== in use at exit: 620,705 bytes in 8,235 blocks +==24686== total heap usage: 7,651,834 allocs, 7,643,599 frees, 1,604,363,651 bytes allocated +==24686== +==24686== LEAK SUMMARY: +==24686== definitely lost: 0 bytes in 0 blocks +==24686== indirectly lost: 0 bytes in 0 blocks +==24686== possibly lost: 0 bytes in 0 blocks +==24686== still reachable: 2,576 bytes in 3 blocks +==24686== suppressed: 618,129 bytes in 8,232 blocks +==24686== Reachable blocks (those to which a pointer was found) are not shown. +==24686== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24686== +==24686== For lists of detected and suppressed errors, rerun with: -s +==24686== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-23_05-40-48/TestDistributedBoxCollection_valgrind.txt b/log-files/2024-09-23_05-40-48/TestDistributedBoxCollection_valgrind.txt new file mode 100644 index 000000000..5035436ab --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestDistributedBoxCollection_valgrind.txt @@ -0,0 +1,73 @@ +==24665== Memcheck, a memory error detector +==24665== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24665== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24665== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedBoxCollection -malloc_debug -malloc_dump -memory_info +==24665== Parent PID: 24048 +==24665== +==24665== +==24665== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24665== Open file descriptor 12: +==24665== at 0x823407D: pipe (pipe.c:29) +==24665== by 0x100C507D: ??? +==24665== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24665== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24665== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24665== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24665== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24665== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24665== by 0x161C60: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24665== by 0x15BFE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24665== by 0x15F37A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24665== by 0x15F21A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24665== by 0x15F8B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24665== by 0x15A405: main (TestDistributedBoxCollection.cpp:19) +==24665== +==24665== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24665== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24665== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24665== by 0x6590822: ??? +==24665== by 0x659096F: ??? +==24665== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24665== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24665== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24665== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24665== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24665== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24665== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24665== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24665== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24665== by 0x161C60: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24665== by 0x15BFE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24665== by 0x15F37A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24665== by 0x15F21A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24665== by 0x15F8B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24665== by 0x15A405: main (TestDistributedBoxCollection.cpp:19) +==24665== +==24665== Open file descriptor 113: +==24665== +==24665== +==24665== Open file descriptor 110: +==24665== +==24665== +==24665== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedBoxCollection_valgrind.txt +==24665== +==24665== +==24665== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24665== +==24665== +==24665== +==24665== HEAP SUMMARY: +==24665== in use at exit: 618,226 bytes in 8,238 blocks +==24665== total heap usage: 179,699 allocs, 171,461 frees, 1,440,799,712 bytes allocated +==24665== +==24665== LEAK SUMMARY: +==24665== definitely lost: 0 bytes in 0 blocks +==24665== indirectly lost: 0 bytes in 0 blocks +==24665== possibly lost: 0 bytes in 0 blocks +==24665== still reachable: 24 bytes in 2 blocks +==24665== suppressed: 618,202 bytes in 8,236 blocks +==24665== Reachable blocks (those to which a pointer was found) are not shown. +==24665== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24665== +==24665== For lists of detected and suppressed errors, rerun with: -s +==24665== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestDistributedQuadraticMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestDistributedQuadraticMesh_valgrind.txt new file mode 100644 index 000000000..dcdbc43fa --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestDistributedQuadraticMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24426== Memcheck, a memory error detector +==24426== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24426== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24426== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedQuadraticMesh -malloc_debug -malloc_dump -memory_info +==24426== Parent PID: 24048 +==24426== +==24426== +==24426== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24426== Open file descriptor 12: +==24426== at 0x6D7D07D: pipe (pipe.c:29) +==24426== by 0x100C507D: ??? +==24426== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24426== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24426== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24426== by 0x7017D38: PetscInitialize (pinit.c:924) +==24426== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24426== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24426== by 0x12A04E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24426== by 0x124E9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24426== by 0x127B7A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24426== by 0x127A1A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24426== by 0x1280B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24426== by 0x1232C5: main (TestDistributedQuadraticMesh.cpp:19) +==24426== +==24426== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24426== at 0x6D81A1C: __open_nocancel (open64_nocancel.c:39) +==24426== by 0x6D05BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24426== by 0x6590822: ??? +==24426== by 0x659096F: ??? +==24426== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24426== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24426== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24426== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24426== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24426== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24426== by 0x7017D38: PetscInitialize (pinit.c:924) +==24426== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24426== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24426== by 0x12A04E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24426== by 0x124E9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24426== by 0x127B7A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24426== by 0x127A1A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24426== by 0x1280B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24426== by 0x1232C5: main (TestDistributedQuadraticMesh.cpp:19) +==24426== +==24426== Open file descriptor 113: +==24426== +==24426== +==24426== Open file descriptor 110: +==24426== +==24426== +==24426== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedQuadraticMesh_valgrind.txt +==24426== +==24426== +==24426== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24426== +==24426== +==24426== +==24426== HEAP SUMMARY: +==24426== in use at exit: 618,226 bytes in 8,238 blocks +==24426== total heap usage: 204,142 allocs, 195,904 frees, 1,346,746,862 bytes allocated +==24426== +==24426== LEAK SUMMARY: +==24426== definitely lost: 0 bytes in 0 blocks +==24426== indirectly lost: 0 bytes in 0 blocks +==24426== possibly lost: 0 bytes in 0 blocks +==24426== still reachable: 24 bytes in 2 blocks +==24426== suppressed: 618,202 bytes in 8,236 blocks +==24426== Reachable blocks (those to which a pointer was found) are not shown. +==24426== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24426== +==24426== For lists of detected and suppressed errors, rerun with: -s +==24426== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestDistributedTetrahedralMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestDistributedTetrahedralMesh_valgrind.txt new file mode 100644 index 000000000..5dac69e4d --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestDistributedTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24428== Memcheck, a memory error detector +==24428== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24428== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24428== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==24428== Parent PID: 24048 +==24428== +==24428== +==24428== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24428== Open file descriptor 12: +==24428== at 0x823407D: pipe (pipe.c:29) +==24428== by 0x100C507D: ??? +==24428== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24428== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24428== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24428== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24428== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24428== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24428== by 0x1464DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24428== by 0x13EB23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24428== by 0x141FCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24428== by 0x141E6E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24428== by 0x142505: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24428== by 0x13CE05: main (TestDistributedTetrahedralMesh.cpp:19) +==24428== +==24428== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24428== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24428== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24428== by 0x6590822: ??? +==24428== by 0x659096F: ??? +==24428== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24428== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24428== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24428== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24428== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24428== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24428== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24428== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24428== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24428== by 0x1464DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24428== by 0x13EB23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24428== by 0x141FCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24428== by 0x141E6E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24428== by 0x142505: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24428== by 0x13CE05: main (TestDistributedTetrahedralMesh.cpp:19) +==24428== +==24428== Open file descriptor 113: +==24428== +==24428== +==24428== Open file descriptor 110: +==24428== +==24428== +==24428== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedTetrahedralMesh_valgrind.txt +==24428== +==24428== +==24428== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24428== +==24428== +==24428== +==24428== HEAP SUMMARY: +==24428== in use at exit: 620,778 bytes in 8,239 blocks +==24428== total heap usage: 3,378,449 allocs, 3,370,210 frees, 1,457,879,651 bytes allocated +==24428== +==24428== LEAK SUMMARY: +==24428== definitely lost: 0 bytes in 0 blocks +==24428== indirectly lost: 0 bytes in 0 blocks +==24428== possibly lost: 0 bytes in 0 blocks +==24428== still reachable: 2,576 bytes in 3 blocks +==24428== suppressed: 618,202 bytes in 8,236 blocks +==24428== Reachable blocks (those to which a pointer was found) are not shown. +==24428== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24428== +==24428== For lists of detected and suppressed errors, rerun with: -s +==24428== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestDistributedVector_valgrind.txt b/log-files/2024-09-23_05-40-48/TestDistributedVector_valgrind.txt new file mode 100644 index 000000000..9aff59d1a --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestDistributedVector_valgrind.txt @@ -0,0 +1,73 @@ +==24106== Memcheck, a memory error detector +==24106== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24106== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24106== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestDistributedVector -malloc_debug -malloc_dump -memory_info +==24106== Parent PID: 24048 +==24106== +==24106== +==24106== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24106== Open file descriptor 12: +==24106== at 0x607407D: pipe (pipe.c:29) +==24106== by 0xAEA507D: ??? +==24106== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24106== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24106== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24106== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24106== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24106== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24106== by 0x129F94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24106== by 0x124F49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24106== by 0x127BA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24106== by 0x127A48: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24106== by 0x1280DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24106== by 0x123365: main (TestDistributedVector.cpp:19) +==24106== +==24106== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24106== at 0x6078A1C: __open_nocancel (open64_nocancel.c:39) +==24106== by 0x5FFCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24106== by 0x4935822: ??? +==24106== by 0x493596F: ??? +==24106== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24106== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24106== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24106== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24106== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24106== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24106== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24106== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24106== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24106== by 0x129F94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24106== by 0x124F49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24106== by 0x127BA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24106== by 0x127A48: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24106== by 0x1280DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24106== by 0x123365: main (TestDistributedVector.cpp:19) +==24106== +==24106== Open file descriptor 113: +==24106== +==24106== +==24106== Open file descriptor 110: +==24106== +==24106== +==24106== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedVector_valgrind.txt +==24106== +==24106== +==24106== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24106== +==24106== +==24106== +==24106== HEAP SUMMARY: +==24106== in use at exit: 617,842 bytes in 8,238 blocks +==24106== total heap usage: 46,123 allocs, 37,885 frees, 1,338,418,439 bytes allocated +==24106== +==24106== LEAK SUMMARY: +==24106== definitely lost: 0 bytes in 0 blocks +==24106== indirectly lost: 0 bytes in 0 blocks +==24106== possibly lost: 0 bytes in 0 blocks +==24106== still reachable: 24 bytes in 2 blocks +==24106== suppressed: 617,818 bytes in 8,236 blocks +==24106== Reachable blocks (those to which a pointer was found) are not shown. +==24106== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24106== +==24106== For lists of detected and suppressed errors, rerun with: -s +==24106== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestDivisionBiasTrackingModifier_valgrind.txt b/log-files/2024-09-23_05-40-48/TestDivisionBiasTrackingModifier_valgrind.txt new file mode 100644 index 000000000..9eff38051 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestDivisionBiasTrackingModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26290== Memcheck, a memory error detector +==26290== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26290== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26290== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDivisionBiasTrackingModifier -malloc_debug -malloc_dump -memory_info +==26290== Parent PID: 24048 +==26290== +==26290== +==26290== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26290== Open file descriptor 12: +==26290== at 0xF83B07D: pipe (pipe.c:29) +==26290== by 0x196AD07D: ??? +==26290== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26290== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26290== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26290== by 0x10127D38: PetscInitialize (pinit.c:924) +==26290== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26290== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26290== by 0x1FE694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26290== by 0x1F67DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26290== by 0x1F9F72: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26290== by 0x1F9E6D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26290== by 0x1FA481: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26290== by 0x1F4FD5: main (TestDivisionBiasTrackingModifier.cpp:18) +==26290== +==26290== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26290== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==26290== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26290== by 0xF137822: ??? +==26290== by 0xF13796F: ??? +==26290== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26290== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26290== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26290== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26290== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26290== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26290== by 0x10127D38: PetscInitialize (pinit.c:924) +==26290== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26290== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26290== by 0x1FE694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26290== by 0x1F67DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26290== by 0x1F9F72: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26290== by 0x1F9E6D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26290== by 0x1FA481: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26290== by 0x1F4FD5: main (TestDivisionBiasTrackingModifier.cpp:18) +==26290== +==26290== Open file descriptor 113: +==26290== +==26290== +==26290== Open file descriptor 110: +==26290== +==26290== +==26290== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDivisionBiasTrackingModifier_valgrind.txt +==26290== +==26290== +==26290== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26290== +==26290== +==26290== +==26290== HEAP SUMMARY: +==26290== in use at exit: 618,281 bytes in 8,235 blocks +==26290== total heap usage: 7,541,912 allocs, 7,533,677 frees, 2,725,541,322 bytes allocated +==26290== +==26290== LEAK SUMMARY: +==26290== definitely lost: 0 bytes in 0 blocks +==26290== indirectly lost: 0 bytes in 0 blocks +==26290== possibly lost: 0 bytes in 0 blocks +==26290== still reachable: 56 bytes in 3 blocks +==26290== suppressed: 618,225 bytes in 8,232 blocks +==26290== Reachable blocks (those to which a pointer was found) are not shown. +==26290== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26290== +==26290== For lists of detected and suppressed errors, rerun with: -s +==26290== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestDynamicVentilation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestDynamicVentilation_valgrind.txt new file mode 100644 index 000000000..758512b4d --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestDynamicVentilation_valgrind.txt @@ -0,0 +1,73 @@ +==41200== Memcheck, a memory error detector +==41200== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41200== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41200== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestDynamicVentilation -malloc_debug -malloc_dump -memory_info +==41200== Parent PID: 24048 +==41200== +==41200== +==41200== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41200== Open file descriptor 12: +==41200== at 0x51FE07D: pipe (pipe.c:29) +==41200== by 0x107A507D: ??? +==41200== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41200== by 0x6779418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41200== by 0x6712D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41200== by 0x5409D38: PetscInitialize (pinit.c:924) +==41200== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41200== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41200== by 0x11807E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41200== by 0x11378D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41200== by 0x1160AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41200== by 0x115F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41200== by 0x1165E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41200== by 0x111BB5: main (TestDynamicVentilation.cpp:19) +==41200== +==41200== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41200== at 0x5202A1C: __open_nocancel (open64_nocancel.c:39) +==41200== by 0x5186BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41200== by 0x4A53822: ??? +==41200== by 0x4A5396F: ??? +==41200== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41200== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41200== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41200== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41200== by 0x6779418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41200== by 0x6712D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41200== by 0x5409D38: PetscInitialize (pinit.c:924) +==41200== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41200== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41200== by 0x11807E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41200== by 0x11378D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41200== by 0x1160AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41200== by 0x115F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41200== by 0x1165E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41200== by 0x111BB5: main (TestDynamicVentilation.cpp:19) +==41200== +==41200== Open file descriptor 113: +==41200== +==41200== +==41200== Open file descriptor 110: +==41200== +==41200== +==41200== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDynamicVentilation_valgrind.txt +==41200== +==41200== +==41200== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41200== +==41200== +==41200== +==41200== HEAP SUMMARY: +==41200== in use at exit: 618,322 bytes in 8,238 blocks +==41200== total heap usage: 74,110 allocs, 65,872 frees, 1,350,507,319 bytes allocated +==41200== +==41200== LEAK SUMMARY: +==41200== definitely lost: 0 bytes in 0 blocks +==41200== indirectly lost: 0 bytes in 0 blocks +==41200== possibly lost: 0 bytes in 0 blocks +==41200== still reachable: 24 bytes in 2 blocks +==41200== suppressed: 618,298 bytes in 8,236 blocks +==41200== Reachable blocks (those to which a pointer was found) are not shown. +==41200== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41200== +==41200== For lists of detected and suppressed errors, rerun with: -s +==41200== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestDynamicallyLoadedCellModels_valgrind.txt b/log-files/2024-09-23_05-40-48/TestDynamicallyLoadedCellModels_valgrind.txt new file mode 100644 index 000000000..44282a261 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestDynamicallyLoadedCellModels_valgrind.txt @@ -0,0 +1,73 @@ +==41770== Memcheck, a memory error detector +==41770== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41770== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41770== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestDynamicallyLoadedCellModels -malloc_debug -malloc_dump -memory_info +==41770== Parent PID: 24048 +==41770== +==41770== +==41770== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41770== Open file descriptor 12: +==41770== at 0x882107D: pipe (pipe.c:29) +==41770== by 0x1432407D: ??? +==41770== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41770== by 0x9F1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41770== by 0x9EB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41770== by 0x8BACD38: PetscInitialize (pinit.c:924) +==41770== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41770== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41770== by 0x123164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41770== by 0x11E28F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41770== by 0x120CE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41770== by 0x120B88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41770== by 0x12121F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41770== by 0x119055: main (TestDynamicallyLoadedCellModels.cpp:19) +==41770== +==41770== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41770== at 0x8825A1C: __open_nocancel (open64_nocancel.c:39) +==41770== by 0x87A9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41770== by 0x848A822: ??? +==41770== by 0x848A96F: ??? +==41770== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41770== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41770== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41770== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41770== by 0x9F1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41770== by 0x9EB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41770== by 0x8BACD38: PetscInitialize (pinit.c:924) +==41770== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41770== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41770== by 0x123164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41770== by 0x11E28F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41770== by 0x120CE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41770== by 0x120B88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41770== by 0x12121F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41770== by 0x119055: main (TestDynamicallyLoadedCellModels.cpp:19) +==41770== +==41770== Open file descriptor 113: +==41770== +==41770== +==41770== Open file descriptor 110: +==41770== +==41770== +==41770== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDynamicallyLoadedCellModels_valgrind.txt +==41770== +==41770== +==41770== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41770== +==41770== +==41770== +==41770== HEAP SUMMARY: +==41770== in use at exit: 632,406 bytes in 8,265 blocks +==41770== total heap usage: 958,940 allocs, 950,675 frees, 1,914,137,854 bytes allocated +==41770== +==41770== LEAK SUMMARY: +==41770== definitely lost: 0 bytes in 0 blocks +==41770== indirectly lost: 0 bytes in 0 blocks +==41770== possibly lost: 0 bytes in 0 blocks +==41770== still reachable: 14,165 bytes in 33 blocks +==41770== suppressed: 618,241 bytes in 8,232 blocks +==41770== Reachable blocks (those to which a pointer was found) are not shown. +==41770== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41770== +==41770== For lists of detected and suppressed errors, rerun with: -s +==41770== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestEdgeInteriorSrn_valgrind.txt b/log-files/2024-09-23_05-40-48/TestEdgeInteriorSrn_valgrind.txt new file mode 100644 index 000000000..e25a4583a --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestEdgeInteriorSrn_valgrind.txt @@ -0,0 +1,73 @@ +==25543== Memcheck, a memory error detector +==25543== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25543== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25543== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEdgeInteriorSrn -malloc_debug -malloc_dump -memory_info +==25543== Parent PID: 24048 +==25543== +==25543== +==25543== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25543== Open file descriptor 12: +==25543== at 0xF83B07D: pipe (pipe.c:29) +==25543== by 0x196AD07D: ??? +==25543== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25543== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25543== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25543== by 0x10127D38: PetscInitialize (pinit.c:924) +==25543== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25543== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25543== by 0x130B3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25543== by 0x12B59D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25543== by 0x12E2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25543== by 0x12E14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25543== by 0x12E7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25543== by 0x1299C5: main (TestEdgeInteriorSrn.cpp:19) +==25543== +==25543== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25543== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==25543== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25543== by 0xF137822: ??? +==25543== by 0xF13796F: ??? +==25543== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25543== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25543== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25543== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25543== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25543== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25543== by 0x10127D38: PetscInitialize (pinit.c:924) +==25543== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25543== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25543== by 0x130B3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25543== by 0x12B59D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25543== by 0x12E2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25543== by 0x12E14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25543== by 0x12E7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25543== by 0x1299C5: main (TestEdgeInteriorSrn.cpp:19) +==25543== +==25543== Open file descriptor 113: +==25543== +==25543== +==25543== Open file descriptor 110: +==25543== +==25543== +==25543== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEdgeInteriorSrn_valgrind.txt +==25543== +==25543== +==25543== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25543== +==25543== +==25543== +==25543== HEAP SUMMARY: +==25543== in use at exit: 618,370 bytes in 8,240 blocks +==25543== total heap usage: 90,088 allocs, 81,848 frees, 1,342,348,797 bytes allocated +==25543== +==25543== LEAK SUMMARY: +==25543== definitely lost: 0 bytes in 0 blocks +==25543== indirectly lost: 0 bytes in 0 blocks +==25543== possibly lost: 0 bytes in 0 blocks +==25543== still reachable: 72 bytes in 4 blocks +==25543== suppressed: 618,298 bytes in 8,236 blocks +==25543== Reachable blocks (those to which a pointer was found) are not shown. +==25543== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25543== +==25543== For lists of detected and suppressed errors, rerun with: -s +==25543== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestEdge_valgrind.txt b/log-files/2024-09-23_05-40-48/TestEdge_valgrind.txt new file mode 100644 index 000000000..d581644e5 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestEdge_valgrind.txt @@ -0,0 +1,73 @@ +==24557== Memcheck, a memory error detector +==24557== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24557== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24557== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestEdge -malloc_debug -malloc_dump -memory_info +==24557== Parent PID: 24048 +==24557== +==24557== +==24557== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24557== Open file descriptor 12: +==24557== at 0x814B07D: pipe (pipe.c:29) +==24557== by 0x100C507D: ??? +==24557== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24557== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24557== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24557== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24557== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24557== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24557== by 0x15EC55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24557== by 0x15930F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24557== by 0x15C29A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24557== by 0x15C196: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24557== by 0x15C7A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24557== by 0x157B05: main (TestEdge.cpp:18) +==24557== +==24557== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24557== at 0x814FA1C: __open_nocancel (open64_nocancel.c:39) +==24557== by 0x80D3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24557== by 0x6590822: ??? +==24557== by 0x659096F: ??? +==24557== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24557== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24557== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24557== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24557== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24557== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24557== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24557== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24557== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24557== by 0x15EC55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24557== by 0x15930F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24557== by 0x15C29A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24557== by 0x15C196: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24557== by 0x15C7A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24557== by 0x157B05: main (TestEdge.cpp:18) +==24557== +==24557== Open file descriptor 113: +==24557== +==24557== +==24557== Open file descriptor 110: +==24557== +==24557== +==24557== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEdge_valgrind.txt +==24557== +==24557== +==24557== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24557== +==24557== +==24557== +==24557== HEAP SUMMARY: +==24557== in use at exit: 618,226 bytes in 8,238 blocks +==24557== total heap usage: 48,027 allocs, 39,789 frees, 1,338,476,228 bytes allocated +==24557== +==24557== LEAK SUMMARY: +==24557== definitely lost: 0 bytes in 0 blocks +==24557== indirectly lost: 0 bytes in 0 blocks +==24557== possibly lost: 0 bytes in 0 blocks +==24557== still reachable: 24 bytes in 2 blocks +==24557== suppressed: 618,202 bytes in 8,236 blocks +==24557== Reachable blocks (those to which a pointer was found) are not shown. +==24557== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24557== +==24557== For lists of detected and suppressed errors, rerun with: -s +==24557== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestElectroMechanicsExactSolution_valgrind.txt b/log-files/2024-09-23_05-40-48/TestElectroMechanicsExactSolution_valgrind.txt new file mode 100644 index 000000000..7858f5afa --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestElectroMechanicsExactSolution_valgrind.txt @@ -0,0 +1,73 @@ +==43305== Memcheck, a memory error detector +==43305== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43305== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43305== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectroMechanicsExactSolution -malloc_debug -malloc_dump -memory_info +==43305== Parent PID: 24048 +==43305== +==43305== +==43305== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43305== Open file descriptor 12: +==43305== at 0xAAEE07D: pipe (pipe.c:29) +==43305== by 0x1432407D: ??? +==43305== by 0xD5A94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43305== by 0xA2F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43305== by 0xA28ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43305== by 0xACF7D38: PetscInitialize (pinit.c:924) +==43305== by 0xA1B71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43305== by 0xA1B7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43305== by 0x12D4D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43305== by 0x12824F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43305== by 0x12ADF6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43305== by 0x12ACF1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43305== by 0x12B305: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43305== by 0x126095: main (TestElectroMechanicsExactSolution.cpp:18) +==43305== +==43305== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43305== at 0xAAF2A1C: __open_nocancel (open64_nocancel.c:39) +==43305== by 0xAA76BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43305== by 0xA1F2822: ??? +==43305== by 0xA1F296F: ??? +==43305== by 0xD64E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43305== by 0xD64E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43305== by 0xD604922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43305== by 0xD5A92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43305== by 0xA2F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43305== by 0xA28ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43305== by 0xACF7D38: PetscInitialize (pinit.c:924) +==43305== by 0xA1B71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43305== by 0xA1B7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43305== by 0x12D4D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43305== by 0x12824F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43305== by 0x12ADF6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43305== by 0x12ACF1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43305== by 0x12B305: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43305== by 0x126095: main (TestElectroMechanicsExactSolution.cpp:18) +==43305== +==43305== Open file descriptor 113: +==43305== +==43305== +==43305== Open file descriptor 110: +==43305== +==43305== +==43305== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectroMechanicsExactSolution_valgrind.txt +==43305== +==43305== +==43305== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43305== +==43305== +==43305== +==43305== HEAP SUMMARY: +==43305== in use at exit: 618,745 bytes in 8,244 blocks +==43305== total heap usage: 1,257,385 allocs, 1,249,141 frees, 1,488,137,886 bytes allocated +==43305== +==43305== LEAK SUMMARY: +==43305== definitely lost: 0 bytes in 0 blocks +==43305== indirectly lost: 0 bytes in 0 blocks +==43305== possibly lost: 0 bytes in 0 blocks +==43305== still reachable: 24 bytes in 2 blocks +==43305== suppressed: 618,721 bytes in 8,242 blocks +==43305== Reachable blocks (those to which a pointer was found) are not shown. +==43305== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43305== +==43305== For lists of detected and suppressed errors, rerun with: -s +==43305== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestElectroMechanicsProblemDefinition_valgrind.txt b/log-files/2024-09-23_05-40-48/TestElectroMechanicsProblemDefinition_valgrind.txt new file mode 100644 index 000000000..843ecea6a --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestElectroMechanicsProblemDefinition_valgrind.txt @@ -0,0 +1,36 @@ +==43298== Memcheck, a memory error detector +==43298== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43298== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43298== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectroMechanicsProblemDefinition -malloc_debug -malloc_dump -memory_info +==43298== Parent PID: 24048 +==43298== +==43298== +==43298== FILE DESCRIPTORS: 7 open (3 std) at exit. +==43298== Open file descriptor 113: +==43298== +==43298== +==43298== Open file descriptor 110: +==43298== +==43298== +==43298== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectroMechanicsProblemDefinition_valgrind.txt +==43298== +==43298== +==43298== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43298== +==43298== +==43298== +==43298== HEAP SUMMARY: +==43298== in use at exit: 24 bytes in 2 blocks +==43298== total heap usage: 13,908 allocs, 13,906 frees, 1,516,403 bytes allocated +==43298== +==43298== LEAK SUMMARY: +==43298== definitely lost: 0 bytes in 0 blocks +==43298== indirectly lost: 0 bytes in 0 blocks +==43298== possibly lost: 0 bytes in 0 blocks +==43298== still reachable: 24 bytes in 2 blocks +==43298== suppressed: 0 bytes in 0 blocks +==43298== Reachable blocks (those to which a pointer was found) are not shown. +==43298== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43298== +==43298== For lists of detected and suppressed errors, rerun with: -s +==43298== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-23_05-40-48/TestElectrodes_valgrind.txt b/log-files/2024-09-23_05-40-48/TestElectrodes_valgrind.txt new file mode 100644 index 000000000..c38d51ec0 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestElectrodes_valgrind.txt @@ -0,0 +1,73 @@ +==43716== Memcheck, a memory error detector +==43716== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43716== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43716== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectrodes -malloc_debug -malloc_dump -memory_info +==43716== Parent PID: 24048 +==43716== +==43716== +==43716== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43716== Open file descriptor 12: +==43716== at 0xBD6007D: pipe (pipe.c:29) +==43716== by 0x1432407D: ??? +==43716== by 0xFADE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43716== by 0xB64E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43716== by 0xB5E7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43716== by 0xA2BBD38: PetscInitialize (pinit.c:924) +==43716== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43716== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43716== by 0x11B15C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43716== by 0x1167ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43716== by 0x118FC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43716== by 0x118E66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43716== by 0x1194FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43716== by 0x114C15: main (TestElectrodes.cpp:19) +==43716== +==43716== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43716== at 0xBD64A1C: __open_nocancel (open64_nocancel.c:39) +==43716== by 0xBCE8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43716== by 0xB54B822: ??? +==43716== by 0xB54B96F: ??? +==43716== by 0xFB836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43716== by 0xFB83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43716== by 0xFB39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43716== by 0xFADE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43716== by 0xB64E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43716== by 0xB5E7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43716== by 0xA2BBD38: PetscInitialize (pinit.c:924) +==43716== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43716== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43716== by 0x11B15C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43716== by 0x1167ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43716== by 0x118FC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43716== by 0x118E66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43716== by 0x1194FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43716== by 0x114C15: main (TestElectrodes.cpp:19) +==43716== +==43716== Open file descriptor 113: +==43716== +==43716== +==43716== Open file descriptor 110: +==43716== +==43716== +==43716== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectrodes_valgrind.txt +==43716== +==43716== +==43716== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43716== +==43716== +==43716== +==43716== HEAP SUMMARY: +==43716== in use at exit: 618,338 bytes in 8,238 blocks +==43716== total heap usage: 264,937 allocs, 256,699 frees, 1,364,214,534 bytes allocated +==43716== +==43716== LEAK SUMMARY: +==43716== definitely lost: 0 bytes in 0 blocks +==43716== indirectly lost: 0 bytes in 0 blocks +==43716== possibly lost: 0 bytes in 0 blocks +==43716== still reachable: 24 bytes in 2 blocks +==43716== suppressed: 618,314 bytes in 8,236 blocks +==43716== Reachable blocks (those to which a pointer was found) are not shown. +==43716== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43716== +==43716== For lists of detected and suppressed errors, rerun with: -s +==43716== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestElementAttributes_valgrind.txt b/log-files/2024-09-23_05-40-48/TestElementAttributes_valgrind.txt new file mode 100644 index 000000000..f8e70307d --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestElementAttributes_valgrind.txt @@ -0,0 +1,73 @@ +==24454== Memcheck, a memory error detector +==24454== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24454== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24454== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestElementAttributes -malloc_debug -malloc_dump -memory_info +==24454== Parent PID: 24048 +==24454== +==24454== +==24454== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24454== Open file descriptor 12: +==24454== at 0x695107D: pipe (pipe.c:29) +==24454== by 0x100C307D: ??? +==24454== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24454== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24454== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24454== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24454== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24454== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24454== by 0x12CF3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24454== by 0x127D29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24454== by 0x12A996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24454== by 0x12A836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24454== by 0x12AECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24454== by 0x126145: main (TestElementAttributes.cpp:19) +==24454== +==24454== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24454== at 0x6955A1C: __open_nocancel (open64_nocancel.c:39) +==24454== by 0x68D9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24454== by 0x6590822: ??? +==24454== by 0x659096F: ??? +==24454== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24454== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24454== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24454== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24454== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24454== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24454== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24454== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24454== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24454== by 0x12CF3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24454== by 0x127D29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24454== by 0x12A996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24454== by 0x12A836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24454== by 0x12AECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24454== by 0x126145: main (TestElementAttributes.cpp:19) +==24454== +==24454== Open file descriptor 113: +==24454== +==24454== +==24454== Open file descriptor 110: +==24454== +==24454== +==24454== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElementAttributes_valgrind.txt +==24454== +==24454== +==24454== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24454== +==24454== +==24454== +==24454== HEAP SUMMARY: +==24454== in use at exit: 618,226 bytes in 8,238 blocks +==24454== total heap usage: 47,474 allocs, 39,236 frees, 1,338,442,822 bytes allocated +==24454== +==24454== LEAK SUMMARY: +==24454== definitely lost: 0 bytes in 0 blocks +==24454== indirectly lost: 0 bytes in 0 blocks +==24454== possibly lost: 0 bytes in 0 blocks +==24454== still reachable: 24 bytes in 2 blocks +==24454== suppressed: 618,202 bytes in 8,236 blocks +==24454== Reachable blocks (those to which a pointer was found) are not shown. +==24454== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24454== +==24454== For lists of detected and suppressed errors, rerun with: -s +==24454== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestElement_valgrind.txt b/log-files/2024-09-23_05-40-48/TestElement_valgrind.txt new file mode 100644 index 000000000..6810e29c3 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestElement_valgrind.txt @@ -0,0 +1,73 @@ +==24453== Memcheck, a memory error detector +==24453== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24453== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24453== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestElement -malloc_debug -malloc_dump -memory_info +==24453== Parent PID: 24048 +==24453== +==24453== +==24453== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24453== Open file descriptor 12: +==24453== at 0x6D3B07D: pipe (pipe.c:29) +==24453== by 0x100C507D: ??? +==24453== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24453== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24453== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24453== by 0x7017D38: PetscInitialize (pinit.c:924) +==24453== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24453== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24453== by 0x12B5A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24453== by 0x12642D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24453== by 0x12932C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24453== by 0x1291CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24453== by 0x129863: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24453== by 0x124855: main (TestElement.cpp:19) +==24453== +==24453== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24453== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24453== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24453== by 0x6590822: ??? +==24453== by 0x659096F: ??? +==24453== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24453== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24453== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24453== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24453== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24453== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24453== by 0x7017D38: PetscInitialize (pinit.c:924) +==24453== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24453== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24453== by 0x12B5A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24453== by 0x12642D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24453== by 0x12932C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24453== by 0x1291CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24453== by 0x129863: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24453== by 0x124855: main (TestElement.cpp:19) +==24453== +==24453== Open file descriptor 113: +==24453== +==24453== +==24453== Open file descriptor 110: +==24453== +==24453== +==24453== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElement_valgrind.txt +==24453== +==24453== +==24453== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24453== +==24453== +==24453== +==24453== HEAP SUMMARY: +==24453== in use at exit: 618,226 bytes in 8,238 blocks +==24453== total heap usage: 65,854 allocs, 57,616 frees, 1,340,508,577 bytes allocated +==24453== +==24453== LEAK SUMMARY: +==24453== definitely lost: 0 bytes in 0 blocks +==24453== indirectly lost: 0 bytes in 0 blocks +==24453== possibly lost: 0 bytes in 0 blocks +==24453== still reachable: 24 bytes in 2 blocks +==24453== suppressed: 618,202 bytes in 8,236 blocks +==24453== Reachable blocks (those to which a pointer was found) are not shown. +==24453== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24453== +==24453== For lists of detected and suppressed errors, rerun with: -s +==24453== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestEllipticBoxDomainPdeModifier_valgrind.txt b/log-files/2024-09-23_05-40-48/TestEllipticBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..c03ca265e --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestEllipticBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25571== Memcheck, a memory error detector +==25571== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25571== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25571== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEllipticBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25571== Parent PID: 24048 +==25571== +==25571== +==25571== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25571== Open file descriptor 12: +==25571== at 0x1108F07D: pipe (pipe.c:29) +==25571== by 0x196AC07D: ??? +==25571== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25571== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25571== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25571== by 0xF627D38: PetscInitialize (pinit.c:924) +==25571== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25571== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25571== by 0x13AB97: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25571== by 0x135563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25571== by 0x138174: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25571== by 0x13806F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25571== by 0x138683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25571== by 0x133D65: main (TestEllipticBoxDomainPdeModifier.cpp:18) +==25571== +==25571== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25571== at 0x11093A1C: __open_nocancel (open64_nocancel.c:39) +==25571== by 0x11017BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25571== by 0xF4D4822: ??? +==25571== by 0xF4D496F: ??? +==25571== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25571== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25571== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25571== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25571== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25571== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25571== by 0xF627D38: PetscInitialize (pinit.c:924) +==25571== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25571== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25571== by 0x13AB97: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25571== by 0x135563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25571== by 0x138174: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25571== by 0x13806F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25571== by 0x138683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25571== by 0x133D65: main (TestEllipticBoxDomainPdeModifier.cpp:18) +==25571== +==25571== Open file descriptor 113: +==25571== +==25571== +==25571== Open file descriptor 110: +==25571== +==25571== +==25571== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEllipticBoxDomainPdeModifier_valgrind.txt +==25571== +==25571== +==25571== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25571== +==25571== +==25571== +==25571== HEAP SUMMARY: +==25571== in use at exit: 618,281 bytes in 8,235 blocks +==25571== total heap usage: 4,550,113 allocs, 4,541,878 frees, 1,904,492,775 bytes allocated +==25571== +==25571== LEAK SUMMARY: +==25571== definitely lost: 0 bytes in 0 blocks +==25571== indirectly lost: 0 bytes in 0 blocks +==25571== possibly lost: 0 bytes in 0 blocks +==25571== still reachable: 56 bytes in 3 blocks +==25571== suppressed: 618,225 bytes in 8,232 blocks +==25571== Reachable blocks (those to which a pointer was found) are not shown. +==25571== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25571== +==25571== For lists of detected and suppressed errors, rerun with: -s +==25571== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestEllipticGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-09-23_05-40-48/TestEllipticGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..d7de5ac15 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestEllipticGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25581== Memcheck, a memory error detector +==25581== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25581== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25581== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEllipticGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25581== Parent PID: 24048 +==25581== +==25581== +==25581== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25581== Open file descriptor 12: +==25581== at 0x1117607D: pipe (pipe.c:29) +==25581== by 0x196AC07D: ??? +==25581== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25581== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25581== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25581== by 0xF627D38: PetscInitialize (pinit.c:924) +==25581== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25581== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25581== by 0x13FC51: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25581== by 0x139D3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25581== by 0x13CDD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25581== by 0x13CC74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25581== by 0x13D30B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25581== by 0x138165: main (TestEllipticGrowingDomainPdeModifier.cpp:19) +==25581== +==25581== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25581== at 0x1117AA1C: __open_nocancel (open64_nocancel.c:39) +==25581== by 0x110FEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25581== by 0xF4D4822: ??? +==25581== by 0xF4D496F: ??? +==25581== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25581== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25581== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25581== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25581== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25581== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25581== by 0xF627D38: PetscInitialize (pinit.c:924) +==25581== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25581== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25581== by 0x13FC51: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25581== by 0x139D3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25581== by 0x13CDD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25581== by 0x13CC74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25581== by 0x13D30B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25581== by 0x138165: main (TestEllipticGrowingDomainPdeModifier.cpp:19) +==25581== +==25581== Open file descriptor 113: +==25581== +==25581== +==25581== Open file descriptor 110: +==25581== +==25581== +==25581== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEllipticGrowingDomainPdeModifier_valgrind.txt +==25581== +==25581== +==25581== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25581== +==25581== +==25581== +==25581== HEAP SUMMARY: +==25581== in use at exit: 618,354 bytes in 8,239 blocks +==25581== total heap usage: 1,610,262 allocs, 1,602,023 frees, 1,438,380,743 bytes allocated +==25581== +==25581== LEAK SUMMARY: +==25581== definitely lost: 0 bytes in 0 blocks +==25581== indirectly lost: 0 bytes in 0 blocks +==25581== possibly lost: 0 bytes in 0 blocks +==25581== still reachable: 56 bytes in 3 blocks +==25581== suppressed: 618,298 bytes in 8,236 blocks +==25581== Reachable blocks (those to which a pointer was found) are not shown. +==25581== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25581== +==25581== For lists of detected and suppressed errors, rerun with: -s +==25581== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestException_valgrind.txt b/log-files/2024-09-23_05-40-48/TestException_valgrind.txt new file mode 100644 index 000000000..c363fb628 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestException_valgrind.txt @@ -0,0 +1,73 @@ +==24107== Memcheck, a memory error detector +==24107== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24107== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24107== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestException -malloc_debug -malloc_dump -memory_info +==24107== Parent PID: 24048 +==24107== +==24107== +==24107== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24107== Open file descriptor 12: +==24107== at 0x4CB207D: pipe (pipe.c:29) +==24107== by 0xAEA507D: ??? +==24107== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24107== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24107== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24107== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24107== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24107== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24107== by 0x114E36: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24107== by 0x1105AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24107== by 0x112ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24107== by 0x112D78: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24107== by 0x11340F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24107== by 0x10E9D5: main (TestException.cpp:19) +==24107== +==24107== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24107== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24107== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24107== by 0x4935822: ??? +==24107== by 0x493596F: ??? +==24107== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24107== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24107== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24107== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24107== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24107== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24107== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24107== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24107== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24107== by 0x114E36: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24107== by 0x1105AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24107== by 0x112ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24107== by 0x112D78: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24107== by 0x11340F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24107== by 0x10E9D5: main (TestException.cpp:19) +==24107== +==24107== Open file descriptor 113: +==24107== +==24107== +==24107== Open file descriptor 110: +==24107== +==24107== +==24107== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestException_valgrind.txt +==24107== +==24107== +==24107== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24107== +==24107== +==24107== +==24107== HEAP SUMMARY: +==24107== in use at exit: 617,842 bytes in 8,238 blocks +==24107== total heap usage: 45,183 allocs, 36,945 frees, 1,338,187,273 bytes allocated +==24107== +==24107== LEAK SUMMARY: +==24107== definitely lost: 0 bytes in 0 blocks +==24107== indirectly lost: 0 bytes in 0 blocks +==24107== possibly lost: 0 bytes in 0 blocks +==24107== still reachable: 24 bytes in 2 blocks +==24107== suppressed: 617,818 bytes in 8,236 blocks +==24107== Reachable blocks (those to which a pointer was found) are not shown. +==24107== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24107== +==24107== For lists of detected and suppressed errors, rerun with: -s +==24107== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestExecutableSupport_valgrind.txt b/log-files/2024-09-23_05-40-48/TestExecutableSupport_valgrind.txt new file mode 100644 index 000000000..b9eb61425 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestExecutableSupport_valgrind.txt @@ -0,0 +1,79 @@ +==24108== Memcheck, a memory error detector +==24108== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24108== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24108== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestExecutableSupport -malloc_debug -malloc_dump -memory_info +==24108== Parent PID: 24048 +==24108== +==24108== +==24108== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24108== Open file descriptor 12: +==24108== at 0x4CB207D: pipe (pipe.c:29) +==24108== by 0xAEA507D: ??? +==24108== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24108== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24108== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24108== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24108== by 0x48D632C: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) +==24108== by 0x48D7EC0: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:455) +==24108== by 0x1120FD: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) +==24108== by 0x1124BC: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) +==24108== by 0x10D6CA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==24108== by 0x1103DA: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==24108== by 0x1102BF: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==24108== by 0x110165: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==24108== by 0x110027: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24108== by 0x11063B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24108== by 0x10C695: main (TestExecutableSupport.cpp:18) +==24108== +==24108== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24108== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24108== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24108== by 0x4935822: ??? +==24108== by 0x493596F: ??? +==24108== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24108== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24108== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24108== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24108== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24108== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24108== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24108== by 0x48D632C: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) +==24108== by 0x48D7EC0: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:455) +==24108== by 0x1120FD: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) +==24108== by 0x1124BC: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) +==24108== by 0x10D6CA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==24108== by 0x1103DA: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==24108== by 0x1102BF: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==24108== by 0x110165: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==24108== by 0x110027: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24108== by 0x11063B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24108== by 0x10C695: main (TestExecutableSupport.cpp:18) +==24108== +==24108== Open file descriptor 113: +==24108== +==24108== +==24108== Open file descriptor 110: +==24108== +==24108== +==24108== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExecutableSupport_valgrind.txt +==24108== +==24108== +==24108== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24108== +==24108== +==24108== +==24108== HEAP SUMMARY: +==24108== in use at exit: 617,842 bytes in 8,238 blocks +==24108== total heap usage: 45,223 allocs, 36,985 frees, 1,338,262,380 bytes allocated +==24108== +==24108== LEAK SUMMARY: +==24108== definitely lost: 0 bytes in 0 blocks +==24108== indirectly lost: 0 bytes in 0 blocks +==24108== possibly lost: 0 bytes in 0 blocks +==24108== still reachable: 24 bytes in 2 blocks +==24108== suppressed: 617,818 bytes in 8,236 blocks +==24108== Reachable blocks (those to which a pointer was found) are not shown. +==24108== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24108== +==24108== For lists of detected and suppressed errors, rerun with: -s +==24108== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestExplicitCardiacMechanicsSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestExplicitCardiacMechanicsSolver_valgrind.txt new file mode 100644 index 000000000..22493d5e3 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestExplicitCardiacMechanicsSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43325== Memcheck, a memory error detector +==43325== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43325== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43325== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExplicitCardiacMechanicsSolver -malloc_debug -malloc_dump -memory_info +==43325== Parent PID: 24048 +==43325== +==43325== +==43325== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43325== Open file descriptor 12: +==43325== at 0xAB1207D: pipe (pipe.c:29) +==43325== by 0x1432607D: ??? +==43325== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43325== by 0xC08B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43325== by 0xC024D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43325== by 0xAD1BD38: PetscInitialize (pinit.c:924) +==43325== by 0xA3121D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43325== by 0xA312227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43325== by 0x12399A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43325== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43325== by 0x1218A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43325== by 0x121746: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43325== by 0x121DDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43325== by 0x11D175: main (TestExplicitCardiacMechanicsSolver.cpp:19) +==43325== +==43325== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43325== at 0xAB16A1C: __open_nocancel (open64_nocancel.c:39) +==43325== by 0xAA9ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43325== by 0xA34D822: ??? +==43325== by 0xA34D96F: ??? +==43325== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43325== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43325== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43325== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43325== by 0xC08B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43325== by 0xC024D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43325== by 0xAD1BD38: PetscInitialize (pinit.c:924) +==43325== by 0xA3121D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43325== by 0xA312227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43325== by 0x12399A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43325== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43325== by 0x1218A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43325== by 0x121746: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43325== by 0x121DDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43325== by 0x11D175: main (TestExplicitCardiacMechanicsSolver.cpp:19) +==43325== +==43325== Open file descriptor 113: +==43325== +==43325== +==43325== Open file descriptor 110: +==43325== +==43325== +==43325== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExplicitCardiacMechanicsSolver_valgrind.txt +==43325== +==43325== +==43325== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43325== +==43325== +==43325== +==43325== HEAP SUMMARY: +==43325== in use at exit: 618,265 bytes in 8,234 blocks +==43325== total heap usage: 1,587,802 allocs, 1,579,568 frees, 1,535,127,471 bytes allocated +==43325== +==43325== LEAK SUMMARY: +==43325== definitely lost: 0 bytes in 0 blocks +==43325== indirectly lost: 0 bytes in 0 blocks +==43325== possibly lost: 0 bytes in 0 blocks +==43325== still reachable: 24 bytes in 2 blocks +==43325== suppressed: 618,241 bytes in 8,232 blocks +==43325== Reachable blocks (those to which a pointer was found) are not shown. +==43325== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43325== +==43325== For lists of detected and suppressed errors, rerun with: -s +==43325== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestExtendedBidomainProblem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestExtendedBidomainProblem_valgrind.txt new file mode 100644 index 000000000..5411ed1c7 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestExtendedBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41323== Memcheck, a memory error detector +==41323== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41323== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41323== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainProblem -malloc_debug -malloc_dump -memory_info +==41323== Parent PID: 24048 +==41323== +==41323== +==41323== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41323== Open file descriptor 12: +==41323== at 0xA98907D: pipe (pipe.c:29) +==41323== by 0x1432407D: ??? +==41323== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41323== by 0xA277418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41323== by 0xA210D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41323== by 0xAD14D38: PetscInitialize (pinit.c:924) +==41323== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41323== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41323== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41323== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41323== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41323== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41323== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41323== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) +==41323== +==41323== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41323== at 0xA98DA1C: __open_nocancel (open64_nocancel.c:39) +==41323== by 0xA911BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41323== by 0xA174822: ??? +==41323== by 0xA17496F: ??? +==41323== by 0xDA036DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41323== by 0xDA03938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41323== by 0xD9B9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41323== by 0xD95E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41323== by 0xA277418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41323== by 0xA210D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41323== by 0xAD14D38: PetscInitialize (pinit.c:924) +==41323== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41323== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41323== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41323== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41323== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41323== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41323== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41323== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) +==41323== +==41323== Open file descriptor 113: +==41323== +==41323== +==41323== Open file descriptor 110: +==41323== +==41323== +==41323== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainProblem_valgrind.txt +==41323== +==41323== +==41323== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41323== +==41323== +==41323== +==41323== HEAP SUMMARY: +==41323== in use at exit: 618,745 bytes in 8,244 blocks +==41323== total heap usage: 2,372,929 allocs, 2,364,685 frees, 2,468,286,098 bytes allocated +==41323== +==41323== LEAK SUMMARY: +==41323== definitely lost: 0 bytes in 0 blocks +==41323== indirectly lost: 0 bytes in 0 blocks +==41323== possibly lost: 0 bytes in 0 blocks +==41323== still reachable: 24 bytes in 2 blocks +==41323== suppressed: 618,721 bytes in 8,242 blocks +==41323== Reachable blocks (those to which a pointer was found) are not shown. +==41323== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41323== +==41323== For lists of detected and suppressed errors, rerun with: -s +==41323== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestExtendedBidomainTissue_valgrind.txt b/log-files/2024-09-23_05-40-48/TestExtendedBidomainTissue_valgrind.txt new file mode 100644 index 000000000..416af368d --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestExtendedBidomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==41315== Memcheck, a memory error detector +==41315== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41315== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41315== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainTissue -malloc_debug -malloc_dump -memory_info +==41315== Parent PID: 24048 +==41315== +==41315== +==41315== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41315== Open file descriptor 12: +==41315== at 0xBB9F07D: pipe (pipe.c:29) +==41315== by 0x1432407D: ??? +==41315== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41315== by 0xBF1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41315== by 0xBEB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41315== by 0xA254D38: PetscInitialize (pinit.c:924) +==41315== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41315== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41315== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41315== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41315== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41315== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41315== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41315== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) +==41315== +==41315== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41315== at 0xBBA3A1C: __open_nocancel (open64_nocancel.c:39) +==41315== by 0xBB27BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41315== by 0xA101822: ??? +==41315== by 0xA10196F: ??? +==41315== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41315== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41315== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41315== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41315== by 0xBF1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41315== by 0xBEB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41315== by 0xA254D38: PetscInitialize (pinit.c:924) +==41315== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41315== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41315== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41315== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41315== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41315== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41315== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41315== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) +==41315== +==41315== Open file descriptor 113: +==41315== +==41315== +==41315== Open file descriptor 110: +==41315== +==41315== +==41315== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainTissue_valgrind.txt +==41315== +==41315== +==41315== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41315== +==41315== +==41315== +==41315== HEAP SUMMARY: +==41315== in use at exit: 618,338 bytes in 8,238 blocks +==41315== total heap usage: 120,935 allocs, 112,697 frees, 1,354,349,615 bytes allocated +==41315== +==41315== LEAK SUMMARY: +==41315== definitely lost: 0 bytes in 0 blocks +==41315== indirectly lost: 0 bytes in 0 blocks +==41315== possibly lost: 0 bytes in 0 blocks +==41315== still reachable: 24 bytes in 2 blocks +==41315== suppressed: 618,314 bytes in 8,236 blocks +==41315== Reachable blocks (those to which a pointer was found) are not shown. +==41315== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41315== +==41315== For lists of detected and suppressed errors, rerun with: -s +==41315== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestExtendedVsBidomainProblem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestExtendedVsBidomainProblem_valgrind.txt new file mode 100644 index 000000000..7b5c950c3 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestExtendedVsBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41306== Memcheck, a memory error detector +==41306== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41306== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41306== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedVsBidomainProblem -malloc_debug -malloc_dump -memory_info +==41306== Parent PID: 24048 +==41306== +==41306== +==41306== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41306== Open file descriptor 12: +==41306== at 0xABEF07D: pipe (pipe.c:29) +==41306== by 0x1432407D: ??? +==41306== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41306== by 0xC2EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41306== by 0xC283D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41306== by 0xAF7AD38: PetscInitialize (pinit.c:924) +==41306== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41306== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41306== by 0x12E254: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41306== by 0x128EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41306== by 0x12C1D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41306== by 0x12C076: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41306== by 0x12C70D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41306== by 0x1272D5: main (TestExtendedVsBidomainProblem.cpp:19) +==41306== +==41306== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41306== at 0xABF3A1C: __open_nocancel (open64_nocancel.c:39) +==41306== by 0xAB77BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41306== by 0xA511822: ??? +==41306== by 0xA51196F: ??? +==41306== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41306== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41306== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41306== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41306== by 0xC2EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41306== by 0xC283D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41306== by 0xAF7AD38: PetscInitialize (pinit.c:924) +==41306== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41306== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41306== by 0x12E254: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41306== by 0x128EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41306== by 0x12C1D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41306== by 0x12C076: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41306== by 0x12C70D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41306== by 0x1272D5: main (TestExtendedVsBidomainProblem.cpp:19) +==41306== +==41306== Open file descriptor 113: +==41306== +==41306== +==41306== Open file descriptor 110: +==41306== +==41306== +==41306== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedVsBidomainProblem_valgrind.txt +==41306== +==41306== +==41306== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41306== +==41306== +==41306== +==41306== HEAP SUMMARY: +==41306== in use at exit: 618,818 bytes in 8,248 blocks +==41306== total heap usage: 466,061 allocs, 457,813 frees, 1,446,178,401 bytes allocated +==41306== +==41306== LEAK SUMMARY: +==41306== definitely lost: 0 bytes in 0 blocks +==41306== indirectly lost: 0 bytes in 0 blocks +==41306== possibly lost: 0 bytes in 0 blocks +==41306== still reachable: 24 bytes in 2 blocks +==41306== suppressed: 618,794 bytes in 8,246 blocks +==41306== Reachable blocks (those to which a pointer was found) are not shown. +==41306== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41306== +==41306== For lists of detected and suppressed errors, rerun with: -s +==41306== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 64 from 38) diff --git a/log-files/2024-09-23_05-40-48/TestExtrinsicPullModifier_valgrind.txt b/log-files/2024-09-23_05-40-48/TestExtrinsicPullModifier_valgrind.txt new file mode 100644 index 000000000..6a5fe626b --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestExtrinsicPullModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26380== Memcheck, a memory error detector +==26380== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26380== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26380== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestExtrinsicPullModifier -malloc_debug -malloc_dump -memory_info +==26380== Parent PID: 24048 +==26380== +==26380== +==26380== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26380== Open file descriptor 12: +==26380== at 0xF83B07D: pipe (pipe.c:29) +==26380== by 0x196AD07D: ??? +==26380== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26380== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26380== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26380== by 0x10127D38: PetscInitialize (pinit.c:924) +==26380== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26380== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26380== by 0x1FC280: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26380== by 0x1F453F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26380== by 0x1F7DA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26380== by 0x1F7CA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26380== by 0x1F82B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26380== by 0x1F2D35: main (TestExtrinsicPullModifier.cpp:18) +==26380== +==26380== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26380== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==26380== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26380== by 0xF137822: ??? +==26380== by 0xF13796F: ??? +==26380== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26380== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26380== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26380== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26380== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26380== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26380== by 0x10127D38: PetscInitialize (pinit.c:924) +==26380== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26380== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26380== by 0x1FC280: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26380== by 0x1F453F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26380== by 0x1F7DA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26380== by 0x1F7CA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26380== by 0x1F82B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26380== by 0x1F2D35: main (TestExtrinsicPullModifier.cpp:18) +==26380== +==26380== Open file descriptor 113: +==26380== +==26380== +==26380== Open file descriptor 110: +==26380== +==26380== +==26380== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtrinsicPullModifier_valgrind.txt +==26380== +==26380== +==26380== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26380== +==26380== +==26380== +==26380== HEAP SUMMARY: +==26380== in use at exit: 618,354 bytes in 8,239 blocks +==26380== total heap usage: 223,368 allocs, 215,129 frees, 1,365,674,327 bytes allocated +==26380== +==26380== LEAK SUMMARY: +==26380== definitely lost: 0 bytes in 0 blocks +==26380== indirectly lost: 0 bytes in 0 blocks +==26380== possibly lost: 0 bytes in 0 blocks +==26380== still reachable: 56 bytes in 3 blocks +==26380== suppressed: 618,298 bytes in 8,236 blocks +==26380== Reachable blocks (those to which a pointer was found) are not shown. +==26380== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26380== +==26380== For lists of detected and suppressed errors, rerun with: -s +==26380== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestFemlabMeshReader_valgrind.txt b/log-files/2024-09-23_05-40-48/TestFemlabMeshReader_valgrind.txt new file mode 100644 index 000000000..19e24f544 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestFemlabMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24642== Memcheck, a memory error detector +==24642== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24642== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24642== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestFemlabMeshReader -malloc_debug -malloc_dump -memory_info +==24642== Parent PID: 24048 +==24642== +==24642== +==24642== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24642== Open file descriptor 12: +==24642== at 0x690F07D: pipe (pipe.c:29) +==24642== by 0x100C307D: ??? +==24642== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24642== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24642== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24642== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24642== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24642== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24642== by 0x116D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24642== by 0x11236D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24642== by 0x114DBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24642== by 0x114C5E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24642== by 0x1152F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24642== by 0x110795: main (TestFemlabMeshReader.cpp:19) +==24642== +==24642== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24642== at 0x6913A1C: __open_nocancel (open64_nocancel.c:39) +==24642== by 0x6897BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24642== by 0x6590822: ??? +==24642== by 0x659096F: ??? +==24642== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24642== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24642== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24642== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24642== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24642== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24642== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24642== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24642== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24642== by 0x116D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24642== by 0x11236D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24642== by 0x114DBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24642== by 0x114C5E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24642== by 0x1152F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24642== by 0x110795: main (TestFemlabMeshReader.cpp:19) +==24642== +==24642== Open file descriptor 113: +==24642== +==24642== +==24642== Open file descriptor 110: +==24642== +==24642== +==24642== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFemlabMeshReader_valgrind.txt +==24642== +==24642== +==24642== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24642== +==24642== +==24642== +==24642== HEAP SUMMARY: +==24642== in use at exit: 618,226 bytes in 8,238 blocks +==24642== total heap usage: 68,512 allocs, 60,274 frees, 1,339,840,727 bytes allocated +==24642== +==24642== LEAK SUMMARY: +==24642== definitely lost: 0 bytes in 0 blocks +==24642== indirectly lost: 0 bytes in 0 blocks +==24642== possibly lost: 0 bytes in 0 blocks +==24642== still reachable: 24 bytes in 2 blocks +==24642== suppressed: 618,202 bytes in 8,236 blocks +==24642== Reachable blocks (those to which a pointer was found) are not shown. +==24642== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24642== +==24642== For lists of detected and suppressed errors, rerun with: -s +==24642== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt new file mode 100644 index 000000000..2ec3d252c --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41325== Memcheck, a memory error detector +==41325== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41325== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41325== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreReaderAbilityExtendedBidomainProblem -malloc_debug -malloc_dump -memory_info +==41325== Parent PID: 24048 +==41325== +==41325== +==41325== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41325== Open file descriptor 12: +==41325== at 0xA7DF07D: pipe (pipe.c:29) +==41325== by 0x1432407D: ??? +==41325== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41325== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41325== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41325== by 0xAB68D38: PetscInitialize (pinit.c:924) +==41325== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41325== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41325== by 0x128E4C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41325== by 0x123553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41325== by 0x126214: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41325== by 0x12610F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41325== by 0x126723: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41325== by 0x121D55: main (TestFibreReaderAbilityExtendedBidomainProblem.cpp:18) +==41325== +==41325== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41325== at 0xA7E3A1C: __open_nocancel (open64_nocancel.c:39) +==41325== by 0xA767BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41325== by 0xA101822: ??? +==41325== by 0xA10196F: ??? +==41325== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41325== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41325== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41325== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41325== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41325== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41325== by 0xAB68D38: PetscInitialize (pinit.c:924) +==41325== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41325== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41325== by 0x128E4C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41325== by 0x123553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41325== by 0x126214: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41325== by 0x12610F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41325== by 0x126723: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41325== by 0x121D55: main (TestFibreReaderAbilityExtendedBidomainProblem.cpp:18) +==41325== +==41325== Open file descriptor 113: +==41325== +==41325== +==41325== Open file descriptor 110: +==41325== +==41325== +==41325== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt +==41325== +==41325== +==41325== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41325== +==41325== +==41325== +==41325== HEAP SUMMARY: +==41325== in use at exit: 618,338 bytes in 8,238 blocks +==41325== total heap usage: 115,878 allocs, 107,640 frees, 1,342,959,849 bytes allocated +==41325== +==41325== LEAK SUMMARY: +==41325== definitely lost: 0 bytes in 0 blocks +==41325== indirectly lost: 0 bytes in 0 blocks +==41325== possibly lost: 0 bytes in 0 blocks +==41325== still reachable: 24 bytes in 2 blocks +==41325== suppressed: 618,314 bytes in 8,236 blocks +==41325== Reachable blocks (those to which a pointer was found) are not shown. +==41325== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41325== +==41325== For lists of detected and suppressed errors, rerun with: -s +==41325== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestFibreReader_valgrind.txt b/log-files/2024-09-23_05-40-48/TestFibreReader_valgrind.txt new file mode 100644 index 000000000..035e521b2 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestFibreReader_valgrind.txt @@ -0,0 +1,36 @@ +==41366== Memcheck, a memory error detector +==41366== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41366== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41366== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreReader -malloc_debug -malloc_dump -memory_info +==41366== Parent PID: 24048 +==41366== +==41366== +==41366== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41366== Open file descriptor 113: +==41366== +==41366== +==41366== Open file descriptor 110: +==41366== +==41366== +==41366== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreReader_valgrind.txt +==41366== +==41366== +==41366== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41366== +==41366== +==41366== +==41366== HEAP SUMMARY: +==41366== in use at exit: 24 bytes in 2 blocks +==41366== total heap usage: 9,356 allocs, 9,354 frees, 3,309,578 bytes allocated +==41366== +==41366== LEAK SUMMARY: +==41366== definitely lost: 0 bytes in 0 blocks +==41366== indirectly lost: 0 bytes in 0 blocks +==41366== possibly lost: 0 bytes in 0 blocks +==41366== still reachable: 24 bytes in 2 blocks +==41366== suppressed: 0 bytes in 0 blocks +==41366== Reachable blocks (those to which a pointer was found) are not shown. +==41366== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41366== +==41366== For lists of detected and suppressed errors, rerun with: -s +==41366== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-23_05-40-48/TestFibreWriter_valgrind.txt b/log-files/2024-09-23_05-40-48/TestFibreWriter_valgrind.txt new file mode 100644 index 000000000..b143267c0 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestFibreWriter_valgrind.txt @@ -0,0 +1,73 @@ +==41372== Memcheck, a memory error detector +==41372== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41372== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41372== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreWriter -malloc_debug -malloc_dump -memory_info +==41372== Parent PID: 24048 +==41372== +==41372== +==41372== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41372== Open file descriptor 12: +==41372== at 0x9A2107D: pipe (pipe.c:29) +==41372== by 0x1432607D: ??? +==41372== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41372== by 0x9656418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41372== by 0x95EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41372== by 0x82C3D38: PetscInitialize (pinit.c:924) +==41372== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41372== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41372== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41372== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41372== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41372== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41372== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41372== by 0x113DD5: main (TestFibreWriter.cpp:18) +==41372== +==41372== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41372== at 0x9A25A1C: __open_nocancel (open64_nocancel.c:39) +==41372== by 0x99A9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41372== by 0x9553822: ??? +==41372== by 0x955396F: ??? +==41372== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41372== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41372== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41372== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41372== by 0x9656418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41372== by 0x95EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41372== by 0x82C3D38: PetscInitialize (pinit.c:924) +==41372== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41372== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41372== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41372== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41372== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41372== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41372== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41372== by 0x113DD5: main (TestFibreWriter.cpp:18) +==41372== +==41372== Open file descriptor 113: +==41372== +==41372== +==41372== Open file descriptor 110: +==41372== +==41372== +==41372== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreWriter_valgrind.txt +==41372== +==41372== +==41372== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41372== +==41372== +==41372== +==41372== HEAP SUMMARY: +==41372== in use at exit: 618,338 bytes in 8,238 blocks +==41372== total heap usage: 57,352 allocs, 49,114 frees, 1,339,751,738 bytes allocated +==41372== +==41372== LEAK SUMMARY: +==41372== definitely lost: 0 bytes in 0 blocks +==41372== indirectly lost: 0 bytes in 0 blocks +==41372== possibly lost: 0 bytes in 0 blocks +==41372== still reachable: 24 bytes in 2 blocks +==41372== suppressed: 618,314 bytes in 8,236 blocks +==41372== Reachable blocks (those to which a pointer was found) are not shown. +==41372== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41372== +==41372== For lists of detected and suppressed errors, rerun with: -s +==41372== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestFileComparison_valgrind.txt b/log-files/2024-09-23_05-40-48/TestFileComparison_valgrind.txt new file mode 100644 index 000000000..98c649b44 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestFileComparison_valgrind.txt @@ -0,0 +1,73 @@ +==24140== Memcheck, a memory error detector +==24140== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24140== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24140== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFileComparison -malloc_debug -malloc_dump -memory_info +==24140== Parent PID: 24048 +==24140== +==24140== +==24140== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24140== Open file descriptor 12: +==24140== at 0x4CB207D: pipe (pipe.c:29) +==24140== by 0xAEA507D: ??? +==24140== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24140== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24140== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24140== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24140== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24140== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24140== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24140== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24140== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24140== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24140== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24140== by 0x110B35: main (TestFileComparison.cpp:18) +==24140== +==24140== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24140== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24140== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24140== by 0x4935822: ??? +==24140== by 0x493596F: ??? +==24140== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24140== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24140== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24140== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24140== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24140== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24140== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24140== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24140== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24140== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24140== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24140== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24140== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24140== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24140== by 0x110B35: main (TestFileComparison.cpp:18) +==24140== +==24140== Open file descriptor 113: +==24140== +==24140== +==24140== Open file descriptor 110: +==24140== +==24140== +==24140== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFileComparison_valgrind.txt +==24140== +==24140== +==24140== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24140== +==24140== +==24140== +==24140== HEAP SUMMARY: +==24140== in use at exit: 617,842 bytes in 8,238 blocks +==24140== total heap usage: 45,390 allocs, 37,152 frees, 1,338,618,167 bytes allocated +==24140== +==24140== LEAK SUMMARY: +==24140== definitely lost: 0 bytes in 0 blocks +==24140== indirectly lost: 0 bytes in 0 blocks +==24140== possibly lost: 0 bytes in 0 blocks +==24140== still reachable: 24 bytes in 2 blocks +==24140== suppressed: 617,818 bytes in 8,236 blocks +==24140== Reachable blocks (those to which a pointer was found) are not shown. +==24140== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24140== +==24140== For lists of detected and suppressed errors, rerun with: -s +==24140== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestFileFinder_valgrind.txt b/log-files/2024-09-23_05-40-48/TestFileFinder_valgrind.txt new file mode 100644 index 000000000..5b8786e89 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestFileFinder_valgrind.txt @@ -0,0 +1,73 @@ +==24139== Memcheck, a memory error detector +==24139== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24139== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24139== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFileFinder -malloc_debug -malloc_dump -memory_info +==24139== Parent PID: 24048 +==24139== +==24139== +==24139== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24139== Open file descriptor 12: +==24139== at 0x616907D: pipe (pipe.c:29) +==24139== by 0xAEA507D: ??? +==24139== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24139== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24139== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24139== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24139== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24139== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24139== by 0x118727: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24139== by 0x113B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24139== by 0x1166DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24139== by 0x11657A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24139== by 0x116C11: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24139== by 0x111FB5: main (TestFileFinder.cpp:19) +==24139== +==24139== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24139== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24139== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24139== by 0x5CB3822: ??? +==24139== by 0x5CB396F: ??? +==24139== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24139== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24139== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24139== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24139== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24139== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24139== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24139== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24139== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24139== by 0x118727: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24139== by 0x113B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24139== by 0x1166DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24139== by 0x11657A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24139== by 0x116C11: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24139== by 0x111FB5: main (TestFileFinder.cpp:19) +==24139== +==24139== Open file descriptor 113: +==24139== +==24139== +==24139== Open file descriptor 110: +==24139== +==24139== +==24139== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFileFinder_valgrind.txt +==24139== +==24139== +==24139== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24139== +==24139== +==24139== +==24139== HEAP SUMMARY: +==24139== in use at exit: 617,842 bytes in 8,238 blocks +==24139== total heap usage: 48,409 allocs, 40,171 frees, 1,339,904,355 bytes allocated +==24139== +==24139== LEAK SUMMARY: +==24139== definitely lost: 0 bytes in 0 blocks +==24139== indirectly lost: 0 bytes in 0 blocks +==24139== possibly lost: 0 bytes in 0 blocks +==24139== still reachable: 24 bytes in 2 blocks +==24139== suppressed: 617,818 bytes in 8,236 blocks +==24139== Reachable blocks (those to which a pointer was found) are not shown. +==24139== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24139== +==24139== For lists of detected and suppressed errors, rerun with: -s +==24139== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestFineCoarseMeshPair_valgrind.txt b/log-files/2024-09-23_05-40-48/TestFineCoarseMeshPair_valgrind.txt new file mode 100644 index 000000000..0028a0857 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestFineCoarseMeshPair_valgrind.txt @@ -0,0 +1,73 @@ +==25208== Memcheck, a memory error detector +==25208== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25208== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25208== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestFineCoarseMeshPair -malloc_debug -malloc_dump -memory_info +==25208== Parent PID: 24048 +==25208== +==25208== +==25208== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25208== Open file descriptor 12: +==25208== at 0x6FF107D: pipe (pipe.c:29) +==25208== by 0x104D507D: ??? +==25208== by 0xC36A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25208== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25208== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25208== by 0x7340D38: PetscInitialize (pinit.c:924) +==25208== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25208== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25208== by 0x1229DA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25208== by 0x11DBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25208== by 0x120762: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25208== by 0x120602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25208== by 0x120C99: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25208== by 0x11C015: main (TestFineCoarseMeshPair.cpp:19) +==25208== +==25208== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25208== at 0x6FF5A1C: __open_nocancel (open64_nocancel.c:39) +==25208== by 0x6F79BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25208== by 0x692F822: ??? +==25208== by 0x692F96F: ??? +==25208== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25208== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25208== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25208== by 0xC36A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25208== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25208== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25208== by 0x7340D38: PetscInitialize (pinit.c:924) +==25208== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25208== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25208== by 0x1229DA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25208== by 0x11DBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25208== by 0x120762: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25208== by 0x120602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25208== by 0x120C99: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25208== by 0x11C015: main (TestFineCoarseMeshPair.cpp:19) +==25208== +==25208== Open file descriptor 113: +==25208== +==25208== +==25208== Open file descriptor 110: +==25208== +==25208== +==25208== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFineCoarseMeshPair_valgrind.txt +==25208== +==25208== +==25208== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25208== +==25208== +==25208== +==25208== HEAP SUMMARY: +==25208== in use at exit: 618,258 bytes in 8,238 blocks +==25208== total heap usage: 1,511,422 allocs, 1,503,184 frees, 1,478,950,891 bytes allocated +==25208== +==25208== LEAK SUMMARY: +==25208== definitely lost: 0 bytes in 0 blocks +==25208== indirectly lost: 0 bytes in 0 blocks +==25208== possibly lost: 0 bytes in 0 blocks +==25208== still reachable: 24 bytes in 2 blocks +==25208== suppressed: 618,234 bytes in 8,236 blocks +==25208== Reachable blocks (those to which a pointer was found) are not shown. +==25208== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25208== +==25208== For lists of detected and suppressed errors, rerun with: -s +==25208== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestFloatingPointDivisionByZeroPetsc_valgrind.txt b/log-files/2024-09-23_05-40-48/TestFloatingPointDivisionByZeroPetsc_valgrind.txt new file mode 100644 index 000000000..0a7714347 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestFloatingPointDivisionByZeroPetsc_valgrind.txt @@ -0,0 +1,73 @@ +==24142== Memcheck, a memory error detector +==24142== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24142== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24142== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFloatingPointDivisionByZeroPetsc -malloc_debug -malloc_dump -memory_info +==24142== Parent PID: 24048 +==24142== +==24142== +==24142== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24142== Open file descriptor 12: +==24142== at 0x4CB207D: pipe (pipe.c:29) +==24142== by 0xAEA507D: ??? +==24142== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24142== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24142== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24142== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24142== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24142== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24142== by 0x1123B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24142== by 0x10DFCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24142== by 0x110452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24142== by 0x1102F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24142== by 0x110989: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24142== by 0x10C3F5: main (TestFloatingPointDivisionByZeroPetsc.cpp:19) +==24142== +==24142== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24142== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24142== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24142== by 0x4935822: ??? +==24142== by 0x493596F: ??? +==24142== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24142== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24142== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24142== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24142== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24142== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24142== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24142== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24142== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24142== by 0x1123B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24142== by 0x10DFCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24142== by 0x110452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24142== by 0x1102F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24142== by 0x110989: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24142== by 0x10C3F5: main (TestFloatingPointDivisionByZeroPetsc.cpp:19) +==24142== +==24142== Open file descriptor 113: +==24142== +==24142== +==24142== Open file descriptor 110: +==24142== +==24142== +==24142== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFloatingPointDivisionByZeroPetsc_valgrind.txt +==24142== +==24142== +==24142== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24142== +==24142== +==24142== +==24142== HEAP SUMMARY: +==24142== in use at exit: 617,842 bytes in 8,238 blocks +==24142== total heap usage: 44,910 allocs, 36,672 frees, 1,338,160,094 bytes allocated +==24142== +==24142== LEAK SUMMARY: +==24142== definitely lost: 0 bytes in 0 blocks +==24142== indirectly lost: 0 bytes in 0 blocks +==24142== possibly lost: 0 bytes in 0 blocks +==24142== still reachable: 24 bytes in 2 blocks +==24142== suppressed: 617,818 bytes in 8,236 blocks +==24142== Reachable blocks (those to which a pointer was found) are not shown. +==24142== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24142== +==24142== For lists of detected and suppressed errors, rerun with: -s +==24142== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestFloatingPointDivisionByZero_valgrind.txt b/log-files/2024-09-23_05-40-48/TestFloatingPointDivisionByZero_valgrind.txt new file mode 100644 index 000000000..ace615500 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestFloatingPointDivisionByZero_valgrind.txt @@ -0,0 +1,73 @@ +==24141== Memcheck, a memory error detector +==24141== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24141== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24141== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFloatingPointDivisionByZero -malloc_debug -malloc_dump -memory_info +==24141== Parent PID: 24048 +==24141== +==24141== +==24141== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24141== Open file descriptor 12: +==24141== at 0x616907D: pipe (pipe.c:29) +==24141== by 0xAEA507D: ??? +==24141== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24141== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24141== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24141== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24141== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24141== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24141== by 0x11245F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24141== by 0x10E06D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24141== by 0x1104F2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24141== by 0x110392: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24141== by 0x110A29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24141== by 0x10C495: main (TestFloatingPointDivisionByZero.cpp:19) +==24141== +==24141== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24141== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24141== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24141== by 0x5CB3822: ??? +==24141== by 0x5CB396F: ??? +==24141== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24141== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24141== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24141== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24141== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24141== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24141== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24141== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24141== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24141== by 0x11245F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24141== by 0x10E06D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24141== by 0x1104F2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24141== by 0x110392: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24141== by 0x110A29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24141== by 0x10C495: main (TestFloatingPointDivisionByZero.cpp:19) +==24141== +==24141== Open file descriptor 113: +==24141== +==24141== +==24141== Open file descriptor 110: +==24141== +==24141== +==24141== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFloatingPointDivisionByZero_valgrind.txt +==24141== +==24141== +==24141== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24141== +==24141== +==24141== +==24141== HEAP SUMMARY: +==24141== in use at exit: 617,842 bytes in 8,238 blocks +==24141== total heap usage: 44,912 allocs, 36,674 frees, 1,338,160,289 bytes allocated +==24141== +==24141== LEAK SUMMARY: +==24141== definitely lost: 0 bytes in 0 blocks +==24141== indirectly lost: 0 bytes in 0 blocks +==24141== possibly lost: 0 bytes in 0 blocks +==24141== still reachable: 24 bytes in 2 blocks +==24141== suppressed: 617,818 bytes in 8,236 blocks +==24141== Reachable blocks (those to which a pointer was found) are not shown. +==24141== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24141== +==24141== For lists of detected and suppressed errors, rerun with: -s +==24141== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestFluidSource_valgrind.txt b/log-files/2024-09-23_05-40-48/TestFluidSource_valgrind.txt new file mode 100644 index 000000000..a8091969f --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestFluidSource_valgrind.txt @@ -0,0 +1,73 @@ +==24846== Memcheck, a memory error detector +==24846== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24846== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24846== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestFluidSource -malloc_debug -malloc_dump -memory_info +==24846== Parent PID: 24048 +==24846== +==24846== +==24846== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24846== Open file descriptor 12: +==24846== at 0x7DC407D: pipe (pipe.c:29) +==24846== by 0x100C307D: ??? +==24846== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24846== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24846== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24846== by 0x667ED38: PetscInitialize (pinit.c:924) +==24846== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24846== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24846== by 0x11576F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24846== by 0x110FF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24846== by 0x113510: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24846== by 0x11340B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24846== by 0x113A1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24846== by 0x10F7F5: main (TestFluidSource.cpp:18) +==24846== +==24846== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24846== at 0x7DC8A1C: __open_nocancel (open64_nocancel.c:39) +==24846== by 0x7D4CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24846== by 0x790E822: ??? +==24846== by 0x790E96F: ??? +==24846== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24846== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24846== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24846== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24846== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24846== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24846== by 0x667ED38: PetscInitialize (pinit.c:924) +==24846== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24846== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24846== by 0x11576F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24846== by 0x110FF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24846== by 0x113510: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24846== by 0x11340B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24846== by 0x113A1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24846== by 0x10F7F5: main (TestFluidSource.cpp:18) +==24846== +==24846== Open file descriptor 113: +==24846== +==24846== +==24846== Open file descriptor 110: +==24846== +==24846== +==24846== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFluidSource_valgrind.txt +==24846== +==24846== +==24846== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24846== +==24846== +==24846== +==24846== HEAP SUMMARY: +==24846== in use at exit: 618,226 bytes in 8,238 blocks +==24846== total heap usage: 47,306 allocs, 39,068 frees, 1,338,381,169 bytes allocated +==24846== +==24846== LEAK SUMMARY: +==24846== definitely lost: 0 bytes in 0 blocks +==24846== indirectly lost: 0 bytes in 0 blocks +==24846== possibly lost: 0 bytes in 0 blocks +==24846== still reachable: 24 bytes in 2 blocks +==24846== suppressed: 618,202 bytes in 8,236 blocks +==24846== Reachable blocks (those to which a pointer was found) are not shown. +==24846== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24846== +==24846== For lists of detected and suppressed errors, rerun with: -s +==24846== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestForces_valgrind.txt b/log-files/2024-09-23_05-40-48/TestForces_valgrind.txt new file mode 100644 index 000000000..401646c49 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestForces_valgrind.txt @@ -0,0 +1,73 @@ +==26019== Memcheck, a memory error detector +==26019== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26019== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26019== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestForces -malloc_debug -malloc_dump -memory_info +==26019== Parent PID: 24048 +==26019== +==26019== +==26019== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26019== Open file descriptor 12: +==26019== at 0xF92407D: pipe (pipe.c:29) +==26019== by 0x196AD07D: ??? +==26019== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26019== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26019== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26019== by 0x10210D38: PetscInitialize (pinit.c:924) +==26019== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26019== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26019== by 0x14FA72: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26019== by 0x147FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26019== by 0x14B1C0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26019== by 0x14B060: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26019== by 0x14B6F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26019== by 0x1463E5: main (TestForces.cpp:19) +==26019== +==26019== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26019== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==26019== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26019== by 0xF137822: ??? +==26019== by 0xF13796F: ??? +==26019== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26019== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26019== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26019== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26019== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26019== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26019== by 0x10210D38: PetscInitialize (pinit.c:924) +==26019== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26019== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26019== by 0x14FA72: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26019== by 0x147FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26019== by 0x14B1C0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26019== by 0x14B060: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26019== by 0x14B6F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26019== by 0x1463E5: main (TestForces.cpp:19) +==26019== +==26019== Open file descriptor 113: +==26019== +==26019== +==26019== Open file descriptor 110: +==26019== +==26019== +==26019== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestForces_valgrind.txt +==26019== +==26019== +==26019== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26019== +==26019== +==26019== +==26019== HEAP SUMMARY: +==26019== in use at exit: 618,354 bytes in 8,239 blocks +==26019== total heap usage: 100,085 allocs, 91,846 frees, 1,344,049,269 bytes allocated +==26019== +==26019== LEAK SUMMARY: +==26019== definitely lost: 0 bytes in 0 blocks +==26019== indirectly lost: 0 bytes in 0 blocks +==26019== possibly lost: 0 bytes in 0 blocks +==26019== still reachable: 56 bytes in 3 blocks +==26019== suppressed: 618,298 bytes in 8,236 blocks +==26019== Reachable blocks (those to which a pointer was found) are not shown. +==26019== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26019== +==26019== For lists of detected and suppressed errors, rerun with: -s +==26019== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestFourthOrderTensor_valgrind.txt b/log-files/2024-09-23_05-40-48/TestFourthOrderTensor_valgrind.txt new file mode 100644 index 000000000..05fd6ddbc --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestFourthOrderTensor_valgrind.txt @@ -0,0 +1,73 @@ +==24353== Memcheck, a memory error detector +==24353== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24353== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24353== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestFourthOrderTensor -malloc_debug -malloc_dump -memory_info +==24353== Parent PID: 24048 +==24353== +==24353== +==24353== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24353== Open file descriptor 12: +==24353== at 0x4CB407D: pipe (pipe.c:29) +==24353== by 0xAEA507D: ??? +==24353== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24353== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24353== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24353== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24353== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24353== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24353== by 0x114306: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24353== by 0x10FD33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24353== by 0x1122B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24353== by 0x1121AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24353== by 0x1127BF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24353== by 0x10E535: main (TestFourthOrderTensor.cpp:18) +==24353== +==24353== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24353== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==24353== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24353== by 0x4935822: ??? +==24353== by 0x493596F: ??? +==24353== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24353== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24353== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24353== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24353== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24353== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24353== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24353== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24353== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24353== by 0x114306: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24353== by 0x10FD33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24353== by 0x1122B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24353== by 0x1121AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24353== by 0x1127BF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24353== by 0x10E535: main (TestFourthOrderTensor.cpp:18) +==24353== +==24353== Open file descriptor 113: +==24353== +==24353== +==24353== Open file descriptor 110: +==24353== +==24353== +==24353== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFourthOrderTensor_valgrind.txt +==24353== +==24353== +==24353== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24353== +==24353== +==24353== +==24353== HEAP SUMMARY: +==24353== in use at exit: 617,842 bytes in 8,238 blocks +==24353== total heap usage: 44,931 allocs, 36,693 frees, 1,338,167,395 bytes allocated +==24353== +==24353== LEAK SUMMARY: +==24353== definitely lost: 0 bytes in 0 blocks +==24353== indirectly lost: 0 bytes in 0 blocks +==24353== possibly lost: 0 bytes in 0 blocks +==24353== still reachable: 24 bytes in 2 blocks +==24353== suppressed: 617,818 bytes in 8,236 blocks +==24353== Reachable blocks (those to which a pointer was found) are not shown. +==24353== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24353== +==24353== For lists of detected and suppressed errors, rerun with: -s +==24353== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestGIModifiedModels_valgrind.txt b/log-files/2024-09-23_05-40-48/TestGIModifiedModels_valgrind.txt new file mode 100644 index 000000000..70dc77cfd --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestGIModifiedModels_valgrind.txt @@ -0,0 +1,73 @@ +==41349== Memcheck, a memory error detector +==41349== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41349== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41349== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestGIModifiedModels -malloc_debug -malloc_dump -memory_info +==41349== Parent PID: 24048 +==41349== +==41349== +==41349== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41349== Open file descriptor 12: +==41349== at 0x886507D: pipe (pipe.c:29) +==41349== by 0x1432407D: ??? +==41349== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41349== by 0x9F5E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41349== by 0x9EF7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41349== by 0x8BEED38: PetscInitialize (pinit.c:924) +==41349== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41349== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41349== by 0x12C2F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41349== by 0x126ECB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41349== by 0x129968: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41349== by 0x129808: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41349== by 0x129E9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41349== by 0x122165: main (TestGIModifiedModels.cpp:19) +==41349== +==41349== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41349== at 0x8869A1C: __open_nocancel (open64_nocancel.c:39) +==41349== by 0x87EDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41349== by 0x848A822: ??? +==41349== by 0x848A96F: ??? +==41349== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41349== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41349== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41349== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41349== by 0x9F5E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41349== by 0x9EF7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41349== by 0x8BEED38: PetscInitialize (pinit.c:924) +==41349== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41349== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41349== by 0x12C2F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41349== by 0x126ECB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41349== by 0x129968: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41349== by 0x129808: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41349== by 0x129E9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41349== by 0x122165: main (TestGIModifiedModels.cpp:19) +==41349== +==41349== Open file descriptor 113: +==41349== +==41349== +==41349== Open file descriptor 110: +==41349== +==41349== +==41349== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGIModifiedModels_valgrind.txt +==41349== +==41349== +==41349== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41349== +==41349== +==41349== +==41349== HEAP SUMMARY: +==41349== in use at exit: 618,265 bytes in 8,234 blocks +==41349== total heap usage: 1,453,373 allocs, 1,445,139 frees, 1,614,518,586 bytes allocated +==41349== +==41349== LEAK SUMMARY: +==41349== definitely lost: 0 bytes in 0 blocks +==41349== indirectly lost: 0 bytes in 0 blocks +==41349== possibly lost: 0 bytes in 0 blocks +==41349== still reachable: 24 bytes in 2 blocks +==41349== suppressed: 618,241 bytes in 8,232 blocks +==41349== Reachable blocks (those to which a pointer was found) are not shown. +==41349== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41349== +==41349== For lists of detected and suppressed errors, rerun with: -s +==41349== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestGRL1IvpOdeSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestGRL1IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..3dd97a8e7 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestGRL1IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24981== Memcheck, a memory error detector +==24981== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24981== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24981== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestGRL1IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24981== Parent PID: 24048 +==24981== +==24981== +==24981== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24981== Open file descriptor 12: +==24981== at 0x503907D: pipe (pipe.c:29) +==24981== by 0xB1E607D: ??? +==24981== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24981== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24981== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24981== by 0x5308D38: PetscInitialize (pinit.c:924) +==24981== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24981== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24981== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24981== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24981== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24981== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24981== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24981== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) +==24981== +==24981== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24981== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24981== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24981== by 0x4B77822: ??? +==24981== by 0x4B7796F: ??? +==24981== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24981== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24981== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24981== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24981== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24981== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24981== by 0x5308D38: PetscInitialize (pinit.c:924) +==24981== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24981== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24981== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24981== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24981== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24981== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24981== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24981== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) +==24981== +==24981== Open file descriptor 113: +==24981== +==24981== +==24981== Open file descriptor 110: +==24981== +==24981== +==24981== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGRL1IvpOdeSolver_valgrind.txt +==24981== +==24981== +==24981== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24981== +==24981== +==24981== +==24981== HEAP SUMMARY: +==24981== in use at exit: 617,906 bytes in 8,238 blocks +==24981== total heap usage: 50,996 allocs, 42,758 frees, 1,338,665,216 bytes allocated +==24981== +==24981== LEAK SUMMARY: +==24981== definitely lost: 0 bytes in 0 blocks +==24981== indirectly lost: 0 bytes in 0 blocks +==24981== possibly lost: 0 bytes in 0 blocks +==24981== still reachable: 24 bytes in 2 blocks +==24981== suppressed: 617,882 bytes in 8,236 blocks +==24981== Reachable blocks (those to which a pointer was found) are not shown. +==24981== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24981== +==24981== For lists of detected and suppressed errors, rerun with: -s +==24981== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestGRL2IvpOdeSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestGRL2IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..ed765f5e6 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestGRL2IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24982== Memcheck, a memory error detector +==24982== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24982== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24982== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestGRL2IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24982== Parent PID: 24048 +==24982== +==24982== +==24982== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24982== Open file descriptor 12: +==24982== at 0x503907D: pipe (pipe.c:29) +==24982== by 0xB1E607D: ??? +==24982== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24982== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24982== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24982== by 0x5308D38: PetscInitialize (pinit.c:924) +==24982== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24982== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24982== by 0x127082: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24982== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24982== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24982== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24982== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24982== by 0x11EEA5: main (TestGRL2IvpOdeSolver.cpp:19) +==24982== +==24982== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24982== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24982== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24982== by 0x4B77822: ??? +==24982== by 0x4B7796F: ??? +==24982== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24982== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24982== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24982== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24982== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24982== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24982== by 0x5308D38: PetscInitialize (pinit.c:924) +==24982== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24982== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24982== by 0x127082: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24982== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24982== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24982== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24982== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24982== by 0x11EEA5: main (TestGRL2IvpOdeSolver.cpp:19) +==24982== +==24982== Open file descriptor 113: +==24982== +==24982== +==24982== Open file descriptor 110: +==24982== +==24982== +==24982== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGRL2IvpOdeSolver_valgrind.txt +==24982== +==24982== +==24982== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24982== +==24982== +==24982== +==24982== HEAP SUMMARY: +==24982== in use at exit: 617,906 bytes in 8,238 blocks +==24982== total heap usage: 51,373 allocs, 43,135 frees, 1,338,714,521 bytes allocated +==24982== +==24982== LEAK SUMMARY: +==24982== definitely lost: 0 bytes in 0 blocks +==24982== indirectly lost: 0 bytes in 0 blocks +==24982== possibly lost: 0 bytes in 0 blocks +==24982== still reachable: 24 bytes in 2 blocks +==24982== suppressed: 617,882 bytes in 8,236 blocks +==24982== Reachable blocks (those to which a pointer was found) are not shown. +==24982== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24982== +==24982== For lists of detected and suppressed errors, rerun with: -s +==24982== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestGaussianQuadratureRule_valgrind.txt b/log-files/2024-09-23_05-40-48/TestGaussianQuadratureRule_valgrind.txt new file mode 100644 index 000000000..cf4d311ab --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestGaussianQuadratureRule_valgrind.txt @@ -0,0 +1,73 @@ +==25223== Memcheck, a memory error detector +==25223== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25223== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25223== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestGaussianQuadratureRule -malloc_debug -malloc_dump -memory_info +==25223== Parent PID: 24048 +==25223== +==25223== +==25223== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25223== Open file descriptor 12: +==25223== at 0x6D9307D: pipe (pipe.c:29) +==25223== by 0x104D507D: ??? +==25223== by 0xC31D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25223== by 0x8807418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25223== by 0x87A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25223== by 0x70E2D38: PetscInitialize (pinit.c:924) +==25223== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25223== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25223== by 0x11A084: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25223== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25223== by 0x1180E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25223== by 0x117F82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25223== by 0x118619: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25223== by 0x113AB5: main (TestGaussianQuadratureRule.cpp:19) +==25223== +==25223== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25223== at 0x6D97A1C: __open_nocancel (open64_nocancel.c:39) +==25223== by 0x6D1BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25223== by 0x692F822: ??? +==25223== by 0x692F96F: ??? +==25223== by 0xC3C26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25223== by 0xC3C2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25223== by 0xC378922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25223== by 0xC31D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25223== by 0x8807418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25223== by 0x87A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25223== by 0x70E2D38: PetscInitialize (pinit.c:924) +==25223== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25223== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25223== by 0x11A084: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25223== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25223== by 0x1180E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25223== by 0x117F82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25223== by 0x118619: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25223== by 0x113AB5: main (TestGaussianQuadratureRule.cpp:19) +==25223== +==25223== Open file descriptor 113: +==25223== +==25223== +==25223== Open file descriptor 110: +==25223== +==25223== +==25223== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGaussianQuadratureRule_valgrind.txt +==25223== +==25223== +==25223== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25223== +==25223== +==25223== +==25223== HEAP SUMMARY: +==25223== in use at exit: 618,258 bytes in 8,238 blocks +==25223== total heap usage: 47,635 allocs, 39,397 frees, 1,338,403,012 bytes allocated +==25223== +==25223== LEAK SUMMARY: +==25223== definitely lost: 0 bytes in 0 blocks +==25223== indirectly lost: 0 bytes in 0 blocks +==25223== possibly lost: 0 bytes in 0 blocks +==25223== still reachable: 24 bytes in 2 blocks +==25223== suppressed: 618,234 bytes in 8,236 blocks +==25223== Reachable blocks (those to which a pointer was found) are not shown. +==25223== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25223== +==25223== For lists of detected and suppressed errors, rerun with: -s +==25223== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestGeneralizedRushLarsen_valgrind.txt b/log-files/2024-09-23_05-40-48/TestGeneralizedRushLarsen_valgrind.txt new file mode 100644 index 000000000..fb1e7c2d5 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestGeneralizedRushLarsen_valgrind.txt @@ -0,0 +1,73 @@ +==41772== Memcheck, a memory error detector +==41772== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41772== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41772== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestGeneralizedRushLarsen -malloc_debug -malloc_dump -memory_info +==41772== Parent PID: 24048 +==41772== +==41772== +==41772== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41772== Open file descriptor 12: +==41772== at 0x87AE07D: pipe (pipe.c:29) +==41772== by 0x1432407D: ??? +==41772== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41772== by 0x9EA9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41772== by 0x9E42D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41772== by 0x8B39D38: PetscInitialize (pinit.c:924) +==41772== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41772== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41772== by 0x11C6A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41772== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41772== by 0x11A2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41772== by 0x11A14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41772== by 0x11A7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41772== by 0x115CD5: main (TestGeneralizedRushLarsen.cpp:19) +==41772== +==41772== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41772== at 0x87B2A1C: __open_nocancel (open64_nocancel.c:39) +==41772== by 0x8736BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41772== by 0x8417822: ??? +==41772== by 0x841796F: ??? +==41772== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41772== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41772== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41772== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41772== by 0x9EA9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41772== by 0x9E42D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41772== by 0x8B39D38: PetscInitialize (pinit.c:924) +==41772== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41772== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41772== by 0x11C6A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41772== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41772== by 0x11A2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41772== by 0x11A14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41772== by 0x11A7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41772== by 0x115CD5: main (TestGeneralizedRushLarsen.cpp:19) +==41772== +==41772== Open file descriptor 113: +==41772== +==41772== +==41772== Open file descriptor 110: +==41772== +==41772== +==41772== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGeneralizedRushLarsen_valgrind.txt +==41772== +==41772== +==41772== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41772== +==41772== +==41772== +==41772== HEAP SUMMARY: +==41772== in use at exit: 621,870 bytes in 8,242 blocks +==41772== total heap usage: 3,054,221 allocs, 3,045,979 frees, 1,612,720,258 bytes allocated +==41772== +==41772== LEAK SUMMARY: +==41772== definitely lost: 0 bytes in 0 blocks +==41772== indirectly lost: 0 bytes in 0 blocks +==41772== possibly lost: 0 bytes in 0 blocks +==41772== still reachable: 3,629 bytes in 10 blocks +==41772== suppressed: 618,241 bytes in 8,232 blocks +==41772== Reachable blocks (those to which a pointer was found) are not shown. +==41772== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41772== +==41772== For lists of detected and suppressed errors, rerun with: -s +==41772== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2024-09-23_05-40-48/TestGenericEventHandler_valgrind.txt b/log-files/2024-09-23_05-40-48/TestGenericEventHandler_valgrind.txt new file mode 100644 index 000000000..53fe16e78 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestGenericEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24169== Memcheck, a memory error detector +==24169== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24169== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24169== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestGenericEventHandler -malloc_debug -malloc_dump -memory_info +==24169== Parent PID: 24048 +==24169== +==24169== +==24169== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24169== Open file descriptor 12: +==24169== at 0x4DEB07D: pipe (pipe.c:29) +==24169== by 0xAEA307D: ??? +==24169== by 0x643A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24169== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24169== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24169== by 0x5036D38: PetscInitialize (pinit.c:924) +==24169== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24169== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24169== by 0x1166EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24169== by 0x11164D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24169== by 0x11478C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24169== by 0x11462C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24169== by 0x114CC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24169== by 0x10FA75: main (TestGenericEventHandler.cpp:19) +==24169== +==24169== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24169== at 0x4DEFA1C: __open_nocancel (open64_nocancel.c:39) +==24169== by 0x4D73BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24169== by 0x4935822: ??? +==24169== by 0x493596F: ??? +==24169== by 0x64E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24169== by 0x64E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24169== by 0x6497922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24169== by 0x643A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24169== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24169== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24169== by 0x5036D38: PetscInitialize (pinit.c:924) +==24169== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24169== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24169== by 0x1166EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24169== by 0x11164D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24169== by 0x11478C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24169== by 0x11462C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24169== by 0x114CC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24169== by 0x10FA75: main (TestGenericEventHandler.cpp:19) +==24169== +==24169== Open file descriptor 113: +==24169== +==24169== +==24169== Open file descriptor 110: +==24169== +==24169== +==24169== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGenericEventHandler_valgrind.txt +==24169== +==24169== +==24169== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24169== +==24169== +==24169== +==24169== HEAP SUMMARY: +==24169== in use at exit: 617,842 bytes in 8,238 blocks +==24169== total heap usage: 44,984 allocs, 36,746 frees, 1,338,169,060 bytes allocated +==24169== +==24169== LEAK SUMMARY: +==24169== definitely lost: 0 bytes in 0 blocks +==24169== indirectly lost: 0 bytes in 0 blocks +==24169== possibly lost: 0 bytes in 0 blocks +==24169== still reachable: 24 bytes in 2 blocks +==24169== suppressed: 617,818 bytes in 8,236 blocks +==24169== Reachable blocks (those to which a pointer was found) are not shown. +==24169== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24169== +==24169== For lists of detected and suppressed errors, rerun with: -s +==24169== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestGmshMeshReader_valgrind.txt b/log-files/2024-09-23_05-40-48/TestGmshMeshReader_valgrind.txt new file mode 100644 index 000000000..971c997f7 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestGmshMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24643== Memcheck, a memory error detector +==24643== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24643== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24643== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestGmshMeshReader -malloc_debug -malloc_dump -memory_info +==24643== Parent PID: 24048 +==24643== +==24643== +==24643== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24643== Open file descriptor 12: +==24643== at 0x6D3B07D: pipe (pipe.c:29) +==24643== by 0x100C507D: ??? +==24643== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24643== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24643== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24643== by 0x7017D38: PetscInitialize (pinit.c:924) +==24643== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24643== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24643== by 0x1235DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24643== by 0x11EA0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24643== by 0x12152A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24643== by 0x1213CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24643== by 0x121A61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24643== by 0x11CE35: main (TestGmshMeshReader.cpp:19) +==24643== +==24643== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24643== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24643== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24643== by 0x6590822: ??? +==24643== by 0x659096F: ??? +==24643== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24643== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24643== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24643== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24643== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24643== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24643== by 0x7017D38: PetscInitialize (pinit.c:924) +==24643== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24643== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24643== by 0x1235DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24643== by 0x11EA0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24643== by 0x12152A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24643== by 0x1213CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24643== by 0x121A61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24643== by 0x11CE35: main (TestGmshMeshReader.cpp:19) +==24643== +==24643== Open file descriptor 113: +==24643== +==24643== +==24643== Open file descriptor 110: +==24643== +==24643== +==24643== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGmshMeshReader_valgrind.txt +==24643== +==24643== +==24643== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24643== +==24643== +==24643== +==24643== HEAP SUMMARY: +==24643== in use at exit: 618,226 bytes in 8,238 blocks +==24643== total heap usage: 50,716 allocs, 42,478 frees, 1,339,359,091 bytes allocated +==24643== +==24643== LEAK SUMMARY: +==24643== definitely lost: 0 bytes in 0 blocks +==24643== indirectly lost: 0 bytes in 0 blocks +==24643== possibly lost: 0 bytes in 0 blocks +==24643== still reachable: 24 bytes in 2 blocks +==24643== suppressed: 618,202 bytes in 8,236 blocks +==24643== Reachable blocks (those to which a pointer was found) are not shown. +==24643== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24643== +==24643== For lists of detected and suppressed errors, rerun with: -s +==24643== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestGoldbeter1991OdeSystem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestGoldbeter1991OdeSystem_valgrind.txt new file mode 100644 index 000000000..49e53a4d3 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestGoldbeter1991OdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25884== Memcheck, a memory error detector +==25884== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25884== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25884== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestGoldbeter1991OdeSystem -malloc_debug -malloc_dump -memory_info +==25884== Parent PID: 24048 +==25884== +==25884== +==25884== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25884== Open file descriptor 12: +==25884== at 0xEF9407D: pipe (pipe.c:29) +==25884== by 0x196AC07D: ??? +==25884== by 0x13C514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25884== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25884== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25884== by 0xD871D38: PetscInitialize (pinit.c:924) +==25884== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25884== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25884== by 0x124157: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25884== by 0x11F6A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25884== by 0x121BF4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25884== by 0x121AF0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25884== by 0x122103: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25884== by 0x11DEA5: main (TestGoldbeter1991OdeSystem.cpp:18) +==25884== +==25884== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25884== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25884== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25884== by 0xD71E822: ??? +==25884== by 0xD71E96F: ??? +==25884== by 0x13CF66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25884== by 0x13CF6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25884== by 0x13CAC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25884== by 0x13C512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25884== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25884== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25884== by 0xD871D38: PetscInitialize (pinit.c:924) +==25884== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25884== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25884== by 0x124157: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25884== by 0x11F6A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25884== by 0x121BF4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25884== by 0x121AF0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25884== by 0x122103: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25884== by 0x11DEA5: main (TestGoldbeter1991OdeSystem.cpp:18) +==25884== +==25884== Open file descriptor 113: +==25884== +==25884== +==25884== Open file descriptor 110: +==25884== +==25884== +==25884== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGoldbeter1991OdeSystem_valgrind.txt +==25884== +==25884== +==25884== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25884== +==25884== +==25884== +==25884== HEAP SUMMARY: +==25884== in use at exit: 618,322 bytes in 8,238 blocks +==25884== total heap usage: 63,219 allocs, 54,981 frees, 1,339,961,732 bytes allocated +==25884== +==25884== LEAK SUMMARY: +==25884== definitely lost: 0 bytes in 0 blocks +==25884== indirectly lost: 0 bytes in 0 blocks +==25884== possibly lost: 0 bytes in 0 blocks +==25884== still reachable: 24 bytes in 2 blocks +==25884== suppressed: 618,298 bytes in 8,236 blocks +==25884== Reachable blocks (those to which a pointer was found) are not shown. +==25884== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25884== +==25884== For lists of detected and suppressed errors, rerun with: -s +==25884== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestHdf5Converters_valgrind.txt b/log-files/2024-09-23_05-40-48/TestHdf5Converters_valgrind.txt new file mode 100644 index 000000000..68ffd3949 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestHdf5Converters_valgrind.txt @@ -0,0 +1,73 @@ +==25224== Memcheck, a memory error detector +==25224== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25224== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25224== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestHdf5Converters -malloc_debug -malloc_dump -memory_info +==25224== Parent PID: 24048 +==25224== +==25224== +==25224== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25224== Open file descriptor 12: +==25224== at 0x734507D: pipe (pipe.c:29) +==25224== by 0x104D507D: ??? +==25224== by 0xC6094CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25224== by 0x8DB9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25224== by 0x8D52D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25224== by 0x7694D38: PetscInitialize (pinit.c:924) +==25224== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25224== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25224== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25224== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25224== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25224== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25224== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25224== by 0x11B235: main (TestHdf5Converters.cpp:18) +==25224== +==25224== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25224== at 0x7349A1C: __open_nocancel (open64_nocancel.c:39) +==25224== by 0x72CDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25224== by 0x692F822: ??? +==25224== by 0x692F96F: ??? +==25224== by 0xC6AE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25224== by 0xC6AE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25224== by 0xC664922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25224== by 0xC6092DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25224== by 0x8DB9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25224== by 0x8D52D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25224== by 0x7694D38: PetscInitialize (pinit.c:924) +==25224== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25224== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25224== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25224== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25224== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25224== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25224== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25224== by 0x11B235: main (TestHdf5Converters.cpp:18) +==25224== +==25224== Open file descriptor 113: +==25224== +==25224== +==25224== Open file descriptor 110: +==25224== +==25224== +==25224== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5Converters_valgrind.txt +==25224== +==25224== +==25224== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25224== +==25224== +==25224== +==25224== HEAP SUMMARY: +==25224== in use at exit: 618,258 bytes in 8,238 blocks +==25224== total heap usage: 206,016 allocs, 197,778 frees, 1,394,472,308 bytes allocated +==25224== +==25224== LEAK SUMMARY: +==25224== definitely lost: 0 bytes in 0 blocks +==25224== indirectly lost: 0 bytes in 0 blocks +==25224== possibly lost: 0 bytes in 0 blocks +==25224== still reachable: 24 bytes in 2 blocks +==25224== suppressed: 618,234 bytes in 8,236 blocks +==25224== Reachable blocks (those to which a pointer was found) are not shown. +==25224== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25224== +==25224== For lists of detected and suppressed errors, rerun with: -s +==25224== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestHdf5DataReader_valgrind.txt b/log-files/2024-09-23_05-40-48/TestHdf5DataReader_valgrind.txt new file mode 100644 index 000000000..e43c7be73 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestHdf5DataReader_valgrind.txt @@ -0,0 +1,73 @@ +==24304== Memcheck, a memory error detector +==24304== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24304== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24304== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info +==24304== Parent PID: 24048 +==24304== +==24304== +==24304== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24304== Open file descriptor 12: +==24304== at 0x645A07D: pipe (pipe.c:29) +==24304== by 0xAF1807D: ??? +==24304== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24304== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24304== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24304== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24304== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24304== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24304== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24304== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24304== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24304== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24304== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24304== by 0x1151B5: main (TestHdf5DataReader.cpp:19) +==24304== +==24304== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24304== at 0x645EA1C: __open_nocancel (open64_nocancel.c:39) +==24304== by 0x63E2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24304== by 0x5D26822: ??? +==24304== by 0x5D2696F: ??? +==24304== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24304== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24304== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24304== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24304== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24304== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24304== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24304== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24304== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24304== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24304== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24304== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24304== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24304== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24304== by 0x1151B5: main (TestHdf5DataReader.cpp:19) +==24304== +==24304== Open file descriptor 113: +==24304== +==24304== +==24304== Open file descriptor 110: +==24304== +==24304== +==24304== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt +==24304== +==24304== +==24304== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24304== +==24304== +==24304== +==24304== HEAP SUMMARY: +==24304== in use at exit: 618,338 bytes in 8,248 blocks +==24304== total heap usage: 58,547 allocs, 50,299 frees, 1,348,774,911 bytes allocated +==24304== +==24304== LEAK SUMMARY: +==24304== definitely lost: 0 bytes in 0 blocks +==24304== indirectly lost: 0 bytes in 0 blocks +==24304== possibly lost: 0 bytes in 0 blocks +==24304== still reachable: 24 bytes in 2 blocks +==24304== suppressed: 618,314 bytes in 8,246 blocks +==24304== Reachable blocks (those to which a pointer was found) are not shown. +==24304== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24304== +==24304== For lists of detected and suppressed errors, rerun with: -s +==24304== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestHdf5DataWriter_valgrind.txt b/log-files/2024-09-23_05-40-48/TestHdf5DataWriter_valgrind.txt new file mode 100644 index 000000000..89628371a --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestHdf5DataWriter_valgrind.txt @@ -0,0 +1,74 @@ +==24323== Memcheck, a memory error detector +==24323== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24323== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24323== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info +==24323== Parent PID: 24048 +==24323== +==24323== Warning: invalid file descriptor -1 in syscall close() +==24323== +==24323== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24323== Open file descriptor 12: +==24323== at 0x659107D: pipe (pipe.c:29) +==24323== by 0xAF1807D: ??? +==24323== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24323== by 0x61E0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24323== by 0x6179D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24323== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24323== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24323== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24323== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24323== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24323== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24323== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24323== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24323== by 0x115255: main (TestHdf5DataWriter.cpp:19) +==24323== +==24323== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24323== at 0x6595A1C: __open_nocancel (open64_nocancel.c:39) +==24323== by 0x6519BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24323== by 0x5D26822: ??? +==24323== by 0x5D2696F: ??? +==24323== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24323== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24323== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24323== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24323== by 0x61E0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24323== by 0x6179D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24323== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24323== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24323== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24323== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24323== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24323== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24323== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24323== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24323== by 0x115255: main (TestHdf5DataWriter.cpp:19) +==24323== +==24323== Open file descriptor 113: +==24323== +==24323== +==24323== Open file descriptor 110: +==24323== +==24323== +==24323== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt +==24323== +==24323== +==24323== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24323== +==24323== +==24323== +==24323== HEAP SUMMARY: +==24323== in use at exit: 618,338 bytes in 8,248 blocks +==24323== total heap usage: 114,802 allocs, 106,554 frees, 1,412,665,446 bytes allocated +==24323== +==24323== LEAK SUMMARY: +==24323== definitely lost: 0 bytes in 0 blocks +==24323== indirectly lost: 0 bytes in 0 blocks +==24323== possibly lost: 0 bytes in 0 blocks +==24323== still reachable: 24 bytes in 2 blocks +==24323== suppressed: 618,314 bytes in 8,246 blocks +==24323== Reachable blocks (those to which a pointer was found) are not shown. +==24323== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24323== +==24323== For lists of detected and suppressed errors, rerun with: -s +==24323== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestHdf5ToVisualizerConverters_valgrind.txt b/log-files/2024-09-23_05-40-48/TestHdf5ToVisualizerConverters_valgrind.txt new file mode 100644 index 000000000..9bea2bc4c --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestHdf5ToVisualizerConverters_valgrind.txt @@ -0,0 +1,73 @@ +==43490== Memcheck, a memory error detector +==43490== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43490== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43490== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHdf5ToVisualizerConverters -malloc_debug -malloc_dump -memory_info +==43490== Parent PID: 24048 +==43490== +==43490== +==43490== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43490== Open file descriptor 12: +==43490== at 0xA8AB07D: pipe (pipe.c:29) +==43490== by 0x1432407D: ??? +==43490== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43490== by 0xBFA4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43490== by 0xBF3DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43490== by 0xAC34D38: PetscInitialize (pinit.c:924) +==43490== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43490== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43490== by 0x124324: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43490== by 0x11DB0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43490== by 0x120564: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43490== by 0x120404: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43490== by 0x120A9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43490== by 0x11BF35: main (TestHdf5ToVisualizerConverters.cpp:19) +==43490== +==43490== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43490== at 0xA8AFA1C: __open_nocancel (open64_nocancel.c:39) +==43490== by 0xA833BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43490== by 0xA1CD822: ??? +==43490== by 0xA1CD96F: ??? +==43490== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43490== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43490== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43490== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43490== by 0xBFA4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43490== by 0xBF3DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43490== by 0xAC34D38: PetscInitialize (pinit.c:924) +==43490== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43490== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43490== by 0x124324: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43490== by 0x11DB0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43490== by 0x120564: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43490== by 0x120404: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43490== by 0x120A9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43490== by 0x11BF35: main (TestHdf5ToVisualizerConverters.cpp:19) +==43490== +==43490== Open file descriptor 113: +==43490== +==43490== +==43490== Open file descriptor 110: +==43490== +==43490== +==43490== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5ToVisualizerConverters_valgrind.txt +==43490== +==43490== +==43490== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43490== +==43490== +==43490== +==43490== HEAP SUMMARY: +==43490== in use at exit: 618,338 bytes in 8,238 blocks +==43490== total heap usage: 120,271 allocs, 112,033 frees, 1,366,198,066 bytes allocated +==43490== +==43490== LEAK SUMMARY: +==43490== definitely lost: 0 bytes in 0 blocks +==43490== indirectly lost: 0 bytes in 0 blocks +==43490== possibly lost: 0 bytes in 0 blocks +==43490== still reachable: 24 bytes in 2 blocks +==43490== suppressed: 618,314 bytes in 8,236 blocks +==43490== Reachable blocks (those to which a pointer was found) are not shown. +==43490== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43490== +==43490== For lists of detected and suppressed errors, rerun with: -s +==43490== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestHeartConfig_valgrind.txt b/log-files/2024-09-23_05-40-48/TestHeartConfig_valgrind.txt new file mode 100644 index 000000000..b50431b41 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestHeartConfig_valgrind.txt @@ -0,0 +1,73 @@ +==43824== Memcheck, a memory error detector +==43824== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43824== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43824== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartConfig -malloc_debug -malloc_dump -memory_info +==43824== Parent PID: 24048 +==43824== +==43824== +==43824== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43824== Open file descriptor 12: +==43824== at 0xBA9407D: pipe (pipe.c:29) +==43824== by 0x1432407D: ??? +==43824== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43824== by 0xB382418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43824== by 0xB31BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43824== by 0xA012D38: PetscInitialize (pinit.c:924) +==43824== by 0x9E841D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43824== by 0x9E84227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43824== by 0x17E1E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43824== by 0x175CFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43824== by 0x179100: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43824== by 0x178FA0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43824== by 0x179637: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43824== by 0x174125: main (TestHeartConfig.cpp:19) +==43824== +==43824== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43824== at 0xBA98A1C: __open_nocancel (open64_nocancel.c:39) +==43824== by 0xBA1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43824== by 0x9EBF822: ??? +==43824== by 0x9EBF96F: ??? +==43824== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43824== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43824== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43824== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43824== by 0xB382418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43824== by 0xB31BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43824== by 0xA012D38: PetscInitialize (pinit.c:924) +==43824== by 0x9E841D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43824== by 0x9E84227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43824== by 0x17E1E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43824== by 0x175CFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43824== by 0x179100: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43824== by 0x178FA0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43824== by 0x179637: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43824== by 0x174125: main (TestHeartConfig.cpp:19) +==43824== +==43824== Open file descriptor 113: +==43824== +==43824== +==43824== Open file descriptor 110: +==43824== +==43824== +==43824== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartConfig_valgrind.txt +==43824== +==43824== +==43824== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43824== +==43824== +==43824== +==43824== HEAP SUMMARY: +==43824== in use at exit: 618,338 bytes in 8,238 blocks +==43824== total heap usage: 2,320,355 allocs, 2,312,117 frees, 2,008,576,823 bytes allocated +==43824== +==43824== LEAK SUMMARY: +==43824== definitely lost: 0 bytes in 0 blocks +==43824== indirectly lost: 0 bytes in 0 blocks +==43824== possibly lost: 0 bytes in 0 blocks +==43824== still reachable: 24 bytes in 2 blocks +==43824== suppressed: 618,314 bytes in 8,236 blocks +==43824== Reachable blocks (those to which a pointer was found) are not shown. +==43824== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43824== +==43824== For lists of detected and suppressed errors, rerun with: -s +==43824== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestHeartEventHandler_valgrind.txt b/log-files/2024-09-23_05-40-48/TestHeartEventHandler_valgrind.txt new file mode 100644 index 000000000..6fee62fae --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestHeartEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24170== Memcheck, a memory error detector +==24170== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24170== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24170== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestHeartEventHandler -malloc_debug -malloc_dump -memory_info +==24170== Parent PID: 24048 +==24170== +==24170== +==24170== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24170== Open file descriptor 12: +==24170== at 0x4DEB07D: pipe (pipe.c:29) +==24170== by 0xAEA307D: ??? +==24170== by 0x643A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24170== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24170== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24170== by 0x5036D38: PetscInitialize (pinit.c:924) +==24170== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24170== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24170== by 0x115454: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24170== by 0x11064D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24170== by 0x1134F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24170== by 0x113396: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24170== by 0x113A2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24170== by 0x10EA75: main (TestHeartEventHandler.cpp:19) +==24170== +==24170== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24170== at 0x4DEFA1C: __open_nocancel (open64_nocancel.c:39) +==24170== by 0x4D73BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24170== by 0x4935822: ??? +==24170== by 0x493596F: ??? +==24170== by 0x64E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24170== by 0x64E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24170== by 0x6497922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24170== by 0x643A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24170== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24170== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24170== by 0x5036D38: PetscInitialize (pinit.c:924) +==24170== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24170== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24170== by 0x115454: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24170== by 0x11064D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24170== by 0x1134F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24170== by 0x113396: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24170== by 0x113A2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24170== by 0x10EA75: main (TestHeartEventHandler.cpp:19) +==24170== +==24170== Open file descriptor 113: +==24170== +==24170== +==24170== Open file descriptor 110: +==24170== +==24170== +==24170== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartEventHandler_valgrind.txt +==24170== +==24170== +==24170== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24170== +==24170== +==24170== +==24170== HEAP SUMMARY: +==24170== in use at exit: 617,842 bytes in 8,238 blocks +==24170== total heap usage: 44,953 allocs, 36,715 frees, 1,338,164,304 bytes allocated +==24170== +==24170== LEAK SUMMARY: +==24170== definitely lost: 0 bytes in 0 blocks +==24170== indirectly lost: 0 bytes in 0 blocks +==24170== possibly lost: 0 bytes in 0 blocks +==24170== still reachable: 24 bytes in 2 blocks +==24170== suppressed: 617,818 bytes in 8,236 blocks +==24170== Reachable blocks (those to which a pointer was found) are not shown. +==24170== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24170== +==24170== For lists of detected and suppressed errors, rerun with: -s +==24170== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestHeartFileFinder_valgrind.txt b/log-files/2024-09-23_05-40-48/TestHeartFileFinder_valgrind.txt new file mode 100644 index 000000000..ac94d885e --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestHeartFileFinder_valgrind.txt @@ -0,0 +1,73 @@ +==43849== Memcheck, a memory error detector +==43849== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43849== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43849== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartFileFinder -malloc_debug -malloc_dump -memory_info +==43849== Parent PID: 24048 +==43849== +==43849== +==43849== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43849== Open file descriptor 12: +==43849== at 0x856C07D: pipe (pipe.c:29) +==43849== by 0x1432407D: ??? +==43849== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43849== by 0x9C67418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43849== by 0x9C00D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43849== by 0x88F7D38: PetscInitialize (pinit.c:924) +==43849== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43849== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43849== by 0x11F18E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43849== by 0x11A2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43849== by 0x11C9B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43849== by 0x11C8AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43849== by 0x11CEBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43849== by 0x118AB5: main (TestHeartFileFinder.cpp:18) +==43849== +==43849== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43849== at 0x8570A1C: __open_nocancel (open64_nocancel.c:39) +==43849== by 0x84F4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43849== by 0x81D3822: ??? +==43849== by 0x81D396F: ??? +==43849== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43849== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43849== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43849== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43849== by 0x9C67418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43849== by 0x9C00D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43849== by 0x88F7D38: PetscInitialize (pinit.c:924) +==43849== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43849== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43849== by 0x11F18E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43849== by 0x11A2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43849== by 0x11C9B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43849== by 0x11C8AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43849== by 0x11CEBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43849== by 0x118AB5: main (TestHeartFileFinder.cpp:18) +==43849== +==43849== Open file descriptor 113: +==43849== +==43849== +==43849== Open file descriptor 110: +==43849== +==43849== +==43849== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartFileFinder_valgrind.txt +==43849== +==43849== +==43849== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43849== +==43849== +==43849== +==43849== HEAP SUMMARY: +==43849== in use at exit: 618,338 bytes in 8,238 blocks +==43849== total heap usage: 48,970 allocs, 40,732 frees, 1,338,596,103 bytes allocated +==43849== +==43849== LEAK SUMMARY: +==43849== definitely lost: 0 bytes in 0 blocks +==43849== indirectly lost: 0 bytes in 0 blocks +==43849== possibly lost: 0 bytes in 0 blocks +==43849== still reachable: 24 bytes in 2 blocks +==43849== suppressed: 618,314 bytes in 8,236 blocks +==43849== Reachable blocks (those to which a pointer was found) are not shown. +==43849== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43849== +==43849== For lists of detected and suppressed errors, rerun with: -s +==43849== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestHeartGeometryInformation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestHeartGeometryInformation_valgrind.txt new file mode 100644 index 000000000..a5a9c5a56 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestHeartGeometryInformation_valgrind.txt @@ -0,0 +1,73 @@ +==43851== Memcheck, a memory error detector +==43851== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43851== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43851== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartGeometryInformation -malloc_debug -malloc_dump -memory_info +==43851== Parent PID: 24048 +==43851== +==43851== +==43851== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43851== Open file descriptor 12: +==43851== at 0xA50C07D: pipe (pipe.c:29) +==43851== by 0x1432407D: ??? +==43851== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43851== by 0xBC07418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43851== by 0xBBA0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43851== by 0xA897D38: PetscInitialize (pinit.c:924) +==43851== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43851== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43851== by 0x11C60C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43851== by 0x117A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43851== by 0x11A4EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43851== by 0x11A38E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43851== by 0x11AA25: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43851== by 0x115E75: main (TestHeartGeometryInformation.cpp:19) +==43851== +==43851== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43851== at 0xA510A1C: __open_nocancel (open64_nocancel.c:39) +==43851== by 0xA494BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43851== by 0x9E30822: ??? +==43851== by 0x9E3096F: ??? +==43851== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43851== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43851== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43851== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43851== by 0xBC07418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43851== by 0xBBA0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43851== by 0xA897D38: PetscInitialize (pinit.c:924) +==43851== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43851== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43851== by 0x11C60C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43851== by 0x117A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43851== by 0x11A4EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43851== by 0x11A38E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43851== by 0x11AA25: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43851== by 0x115E75: main (TestHeartGeometryInformation.cpp:19) +==43851== +==43851== Open file descriptor 113: +==43851== +==43851== +==43851== Open file descriptor 110: +==43851== +==43851== +==43851== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartGeometryInformation_valgrind.txt +==43851== +==43851== +==43851== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43851== +==43851== +==43851== +==43851== HEAP SUMMARY: +==43851== in use at exit: 618,265 bytes in 8,234 blocks +==43851== total heap usage: 2,705,973 allocs, 2,697,739 frees, 1,653,759,749 bytes allocated +==43851== +==43851== LEAK SUMMARY: +==43851== definitely lost: 0 bytes in 0 blocks +==43851== indirectly lost: 0 bytes in 0 blocks +==43851== possibly lost: 0 bytes in 0 blocks +==43851== still reachable: 24 bytes in 2 blocks +==43851== suppressed: 618,241 bytes in 8,232 blocks +==43851== Reachable blocks (those to which a pointer was found) are not shown. +==43851== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43851== +==43851== For lists of detected and suppressed errors, rerun with: -s +==43851== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestHeartRegionCodes_valgrind.txt b/log-files/2024-09-23_05-40-48/TestHeartRegionCodes_valgrind.txt new file mode 100644 index 000000000..a7b409686 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestHeartRegionCodes_valgrind.txt @@ -0,0 +1,36 @@ +==43866== Memcheck, a memory error detector +==43866== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43866== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43866== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartRegionCodes -malloc_debug -malloc_dump -memory_info +==43866== Parent PID: 24048 +==43866== +==43866== +==43866== FILE DESCRIPTORS: 7 open (3 std) at exit. +==43866== Open file descriptor 113: +==43866== +==43866== +==43866== Open file descriptor 110: +==43866== +==43866== +==43866== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartRegionCodes_valgrind.txt +==43866== +==43866== +==43866== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43866== +==43866== +==43866== +==43866== HEAP SUMMARY: +==43866== in use at exit: 24 bytes in 2 blocks +==43866== total heap usage: 7,159 allocs, 7,157 frees, 732,289 bytes allocated +==43866== +==43866== LEAK SUMMARY: +==43866== definitely lost: 0 bytes in 0 blocks +==43866== indirectly lost: 0 bytes in 0 blocks +==43866== possibly lost: 0 bytes in 0 blocks +==43866== still reachable: 24 bytes in 2 blocks +==43866== suppressed: 0 bytes in 0 blocks +==43866== Reachable blocks (those to which a pointer was found) are not shown. +==43866== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43866== +==43866== For lists of detected and suppressed errors, rerun with: -s +==43866== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-23_05-40-48/TestHelloWorld_valgrind.txt b/log-files/2024-09-23_05-40-48/TestHelloWorld_valgrind.txt new file mode 100644 index 000000000..d51c55e8e --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestHelloWorld_valgrind.txt @@ -0,0 +1,73 @@ +==24171== Memcheck, a memory error detector +==24171== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24171== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24171== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestHelloWorld -malloc_debug -malloc_dump -memory_info +==24171== Parent PID: 24048 +==24171== +==24171== +==24171== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24171== Open file descriptor 12: +==24171== at 0x4CB207D: pipe (pipe.c:29) +==24171== by 0xAEA507D: ??? +==24171== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24171== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24171== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24171== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24171== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24171== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24171== by 0x110C3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24171== by 0x10CB53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24171== by 0x10ED04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24171== by 0x10EC00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24171== by 0x10F213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24171== by 0x10B355: main (TestHelloWorld.cpp:18) +==24171== +==24171== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24171== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24171== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24171== by 0x4935822: ??? +==24171== by 0x493596F: ??? +==24171== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24171== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24171== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24171== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24171== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24171== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24171== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24171== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24171== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24171== by 0x110C3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24171== by 0x10CB53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24171== by 0x10ED04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24171== by 0x10EC00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24171== by 0x10F213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24171== by 0x10B355: main (TestHelloWorld.cpp:18) +==24171== +==24171== Open file descriptor 113: +==24171== +==24171== +==24171== Open file descriptor 110: +==24171== +==24171== +==24171== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHelloWorld_valgrind.txt +==24171== +==24171== +==24171== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24171== +==24171== +==24171== +==24171== HEAP SUMMARY: +==24171== in use at exit: 617,842 bytes in 8,238 blocks +==24171== total heap usage: 44,909 allocs, 36,671 frees, 1,338,158,964 bytes allocated +==24171== +==24171== LEAK SUMMARY: +==24171== definitely lost: 0 bytes in 0 blocks +==24171== indirectly lost: 0 bytes in 0 blocks +==24171== possibly lost: 0 bytes in 0 blocks +==24171== still reachable: 24 bytes in 2 blocks +==24171== suppressed: 617,818 bytes in 8,236 blocks +==24171== Reachable blocks (those to which a pointer was found) are not shown. +==24171== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24171== +==24171== For lists of detected and suppressed errors, rerun with: -s +==24171== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestHeterogeneousConductivities_valgrind.txt b/log-files/2024-09-23_05-40-48/TestHeterogeneousConductivities_valgrind.txt new file mode 100644 index 000000000..bdb9900a6 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestHeterogeneousConductivities_valgrind.txt @@ -0,0 +1,73 @@ +==43869== Memcheck, a memory error detector +==43869== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43869== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43869== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeterogeneousConductivities -malloc_debug -malloc_dump -memory_info +==43869== Parent PID: 24048 +==43869== +==43869== +==43869== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43869== Open file descriptor 12: +==43869== at 0xA7DF07D: pipe (pipe.c:29) +==43869== by 0x1432407D: ??? +==43869== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43869== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43869== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43869== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43869== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43869== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43869== by 0x11BF54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43869== by 0x1174B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43869== by 0x119942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43869== by 0x11983E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43869== by 0x119E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43869== by 0x115CB5: main (TestHeterogeneousConductivities.cpp:18) +==43869== +==43869== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43869== at 0xA7E3A1C: __open_nocancel (open64_nocancel.c:39) +==43869== by 0xA767BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43869== by 0xA101822: ??? +==43869== by 0xA10196F: ??? +==43869== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43869== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43869== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43869== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43869== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43869== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43869== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43869== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43869== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43869== by 0x11BF54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43869== by 0x1174B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43869== by 0x119942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43869== by 0x11983E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43869== by 0x119E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43869== by 0x115CB5: main (TestHeterogeneousConductivities.cpp:18) +==43869== +==43869== Open file descriptor 113: +==43869== +==43869== +==43869== Open file descriptor 110: +==43869== +==43869== +==43869== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeterogeneousConductivities_valgrind.txt +==43869== +==43869== +==43869== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43869== +==43869== +==43869== +==43869== HEAP SUMMARY: +==43869== in use at exit: 618,818 bytes in 8,248 blocks +==43869== total heap usage: 201,472 allocs, 193,224 frees, 1,372,226,219 bytes allocated +==43869== +==43869== LEAK SUMMARY: +==43869== definitely lost: 0 bytes in 0 blocks +==43869== indirectly lost: 0 bytes in 0 blocks +==43869== possibly lost: 0 bytes in 0 blocks +==43869== still reachable: 24 bytes in 2 blocks +==43869== suppressed: 618,794 bytes in 8,246 blocks +==43869== Reachable blocks (those to which a pointer was found) are not shown. +==43869== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43869== +==43869== For lists of detected and suppressed errors, rerun with: -s +==43869== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 38) diff --git a/log-files/2024-09-23_05-40-48/TestHeun2IvpOdeSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestHeun2IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..588647a4b --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestHeun2IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25028== Memcheck, a memory error detector +==25028== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25028== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25028== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestHeun2IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==25028== Parent PID: 24048 +==25028== +==25028== +==25028== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25028== Open file descriptor 12: +==25028== at 0x503907D: pipe (pipe.c:29) +==25028== by 0xB1E607D: ??? +==25028== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25028== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25028== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25028== by 0x5308D38: PetscInitialize (pinit.c:924) +==25028== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25028== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25028== by 0x127368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25028== by 0x1218FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25028== by 0x1243AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25028== by 0x12424F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25028== by 0x1248E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25028== by 0x11EEC5: main (TestHeun2IvpOdeSolver.cpp:19) +==25028== +==25028== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25028== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==25028== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25028== by 0x4B77822: ??? +==25028== by 0x4B7796F: ??? +==25028== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25028== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25028== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25028== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25028== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25028== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25028== by 0x5308D38: PetscInitialize (pinit.c:924) +==25028== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25028== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25028== by 0x127368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25028== by 0x1218FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25028== by 0x1243AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25028== by 0x12424F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25028== by 0x1248E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25028== by 0x11EEC5: main (TestHeun2IvpOdeSolver.cpp:19) +==25028== +==25028== Open file descriptor 113: +==25028== +==25028== +==25028== Open file descriptor 110: +==25028== +==25028== +==25028== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeun2IvpOdeSolver_valgrind.txt +==25028== +==25028== +==25028== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25028== +==25028== +==25028== +==25028== HEAP SUMMARY: +==25028== in use at exit: 617,906 bytes in 8,238 blocks +==25028== total heap usage: 93,032 allocs, 84,794 frees, 1,339,246,186 bytes allocated +==25028== +==25028== LEAK SUMMARY: +==25028== definitely lost: 0 bytes in 0 blocks +==25028== indirectly lost: 0 bytes in 0 blocks +==25028== possibly lost: 0 bytes in 0 blocks +==25028== still reachable: 24 bytes in 2 blocks +==25028== suppressed: 617,882 bytes in 8,236 blocks +==25028== Reachable blocks (those to which a pointer was found) are not shown. +==25028== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25028== +==25028== For lists of detected and suppressed errors, rerun with: -s +==25028== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt new file mode 100644 index 000000000..4b1068aaf --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==41947== Memcheck, a memory error detector +==41947== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41947== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41947== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem -malloc_debug -malloc_dump -memory_info +==41947== Parent PID: 24048 +==41947== +==41947== +==41947== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41947== Open file descriptor 12: +==41947== at 0x856C07D: pipe (pipe.c:29) +==41947== by 0x1432407D: ??? +==41947== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41947== by 0x9C67418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41947== by 0x9C00D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41947== by 0x88F7D38: PetscInitialize (pinit.c:924) +==41947== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41947== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41947== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41947== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41947== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41947== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41947== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41947== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) +==41947== +==41947== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41947== at 0x8570A1C: __open_nocancel (open64_nocancel.c:39) +==41947== by 0x84F4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41947== by 0x81D3822: ??? +==41947== by 0x81D396F: ??? +==41947== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41947== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41947== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41947== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41947== by 0x9C67418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41947== by 0x9C00D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41947== by 0x88F7D38: PetscInitialize (pinit.c:924) +==41947== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41947== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41947== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41947== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41947== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41947== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41947== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41947== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) +==41947== +==41947== Open file descriptor 113: +==41947== +==41947== +==41947== Open file descriptor 110: +==41947== +==41947== +==41947== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt +==41947== +==41947== +==41947== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41947== +==41947== +==41947== +==41947== HEAP SUMMARY: +==41947== in use at exit: 618,338 bytes in 8,238 blocks +==41947== total heap usage: 49,004 allocs, 40,766 frees, 1,338,535,490 bytes allocated +==41947== +==41947== LEAK SUMMARY: +==41947== definitely lost: 0 bytes in 0 blocks +==41947== indirectly lost: 0 bytes in 0 blocks +==41947== possibly lost: 0 bytes in 0 blocks +==41947== still reachable: 24 bytes in 2 blocks +==41947== suppressed: 618,314 bytes in 8,236 blocks +==41947== Reachable blocks (those to which a pointer was found) are not shown. +==41947== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41947== +==41947== For lists of detected and suppressed errors, rerun with: -s +==41947== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestHoneycombMeshGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..e28852c2f --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24580== Memcheck, a memory error detector +==24580== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24580== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24580== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24580== Parent PID: 24048 +==24580== +==24580== +==24580== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24580== Open file descriptor 12: +==24580== at 0x81F007D: pipe (pipe.c:29) +==24580== by 0x100C307D: ??? +==24580== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24580== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24580== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24580== by 0x667ED38: PetscInitialize (pinit.c:924) +==24580== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24580== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24580== by 0x11C6C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24580== by 0x11776D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24580== by 0x11A4A8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24580== by 0x11A348: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24580== by 0x11A9DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24580== by 0x115B95: main (TestHoneycombMeshGenerator.cpp:19) +==24580== +==24580== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24580== at 0x81F4A1C: __open_nocancel (open64_nocancel.c:39) +==24580== by 0x8178BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24580== by 0x790E822: ??? +==24580== by 0x790E96F: ??? +==24580== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24580== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24580== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24580== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24580== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24580== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24580== by 0x667ED38: PetscInitialize (pinit.c:924) +==24580== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24580== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24580== by 0x11C6C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24580== by 0x11776D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24580== by 0x11A4A8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24580== by 0x11A348: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24580== by 0x11A9DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24580== by 0x115B95: main (TestHoneycombMeshGenerator.cpp:19) +==24580== +==24580== Open file descriptor 113: +==24580== +==24580== +==24580== Open file descriptor 110: +==24580== +==24580== +==24580== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHoneycombMeshGenerator_valgrind.txt +==24580== +==24580== +==24580== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24580== +==24580== +==24580== +==24580== HEAP SUMMARY: +==24580== in use at exit: 620,778 bytes in 8,239 blocks +==24580== total heap usage: 1,200,539 allocs, 1,192,300 frees, 1,378,997,837 bytes allocated +==24580== +==24580== LEAK SUMMARY: +==24580== definitely lost: 0 bytes in 0 blocks +==24580== indirectly lost: 0 bytes in 0 blocks +==24580== possibly lost: 0 bytes in 0 blocks +==24580== still reachable: 2,576 bytes in 3 blocks +==24580== suppressed: 618,202 bytes in 8,236 blocks +==24580== Reachable blocks (those to which a pointer was found) are not shown. +==24580== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24580== +==24580== For lists of detected and suppressed errors, rerun with: -s +==24580== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..bd4f0e145 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24739== Memcheck, a memory error detector +==24739== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24739== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24739== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24739== Parent PID: 24048 +==24739== +==24739== +==24739== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24739== Open file descriptor 12: +==24739== at 0x6C5407D: pipe (pipe.c:29) +==24739== by 0x100C507D: ??? +==24739== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24739== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24739== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24739== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24739== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24739== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24739== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24739== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24739== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24739== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24739== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24739== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) +==24739== +==24739== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24739== at 0x6C58A1C: __open_nocancel (open64_nocancel.c:39) +==24739== by 0x6BDCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24739== by 0x6590822: ??? +==24739== by 0x659096F: ??? +==24739== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24739== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24739== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24739== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24739== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24739== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24739== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24739== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24739== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24739== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24739== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24739== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24739== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24739== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24739== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) +==24739== +==24739== Open file descriptor 113: +==24739== +==24739== +==24739== Open file descriptor 110: +==24739== +==24739== +==24739== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHoneycombVertexMeshGenerator_valgrind.txt +==24739== +==24739== +==24739== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24739== +==24739== +==24739== +==24739== HEAP SUMMARY: +==24739== in use at exit: 618,226 bytes in 8,238 blocks +==24739== total heap usage: 412,635 allocs, 404,397 frees, 1,357,653,655 bytes allocated +==24739== +==24739== LEAK SUMMARY: +==24739== definitely lost: 0 bytes in 0 blocks +==24739== indirectly lost: 0 bytes in 0 blocks +==24739== possibly lost: 0 bytes in 0 blocks +==24739== still reachable: 24 bytes in 2 blocks +==24739== suppressed: 618,202 bytes in 8,236 blocks +==24739== Reachable blocks (those to which a pointer was found) are not shown. +==24739== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24739== +==24739== For lists of detected and suppressed errors, rerun with: -s +==24739== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestImmersedBoundary2dArrays_valgrind.txt b/log-files/2024-09-23_05-40-48/TestImmersedBoundary2dArrays_valgrind.txt new file mode 100644 index 000000000..909d4bc0a --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestImmersedBoundary2dArrays_valgrind.txt @@ -0,0 +1,73 @@ +==24855== Memcheck, a memory error detector +==24855== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24855== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24855== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundary2dArrays -malloc_debug -malloc_dump -memory_info +==24855== Parent PID: 24048 +==24855== +==24855== +==24855== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24855== Open file descriptor 12: +==24855== at 0x81F007D: pipe (pipe.c:29) +==24855== by 0x100C307D: ??? +==24855== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24855== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24855== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24855== by 0x667ED38: PetscInitialize (pinit.c:924) +==24855== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24855== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24855== by 0x12E481: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24855== by 0x129F13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24855== by 0x12C4B2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24855== by 0x12C3AD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24855== by 0x12C9C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24855== by 0x128715: main (TestImmersedBoundary2dArrays.cpp:18) +==24855== +==24855== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24855== at 0x81F4A1C: __open_nocancel (open64_nocancel.c:39) +==24855== by 0x8178BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24855== by 0x790E822: ??? +==24855== by 0x790E96F: ??? +==24855== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24855== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24855== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24855== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24855== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24855== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24855== by 0x667ED38: PetscInitialize (pinit.c:924) +==24855== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24855== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24855== by 0x12E481: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24855== by 0x129F13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24855== by 0x12C4B2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24855== by 0x12C3AD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24855== by 0x12C9C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24855== by 0x128715: main (TestImmersedBoundary2dArrays.cpp:18) +==24855== +==24855== Open file descriptor 113: +==24855== +==24855== +==24855== Open file descriptor 110: +==24855== +==24855== +==24855== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundary2dArrays_valgrind.txt +==24855== +==24855== +==24855== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24855== +==24855== +==24855== +==24855== HEAP SUMMARY: +==24855== in use at exit: 620,778 bytes in 8,239 blocks +==24855== total heap usage: 49,873 allocs, 41,634 frees, 1,345,273,670 bytes allocated +==24855== +==24855== LEAK SUMMARY: +==24855== definitely lost: 0 bytes in 0 blocks +==24855== indirectly lost: 0 bytes in 0 blocks +==24855== possibly lost: 0 bytes in 0 blocks +==24855== still reachable: 2,576 bytes in 3 blocks +==24855== suppressed: 618,202 bytes in 8,236 blocks +==24855== Reachable blocks (those to which a pointer was found) are not shown. +==24855== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24855== +==24855== For lists of detected and suppressed errors, rerun with: -s +==24855== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestImmersedBoundaryCellPopulation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryCellPopulation_valgrind.txt new file mode 100644 index 000000000..5c7304166 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26100== Memcheck, a memory error detector +==26100== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26100== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26100== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundaryCellPopulation -malloc_debug -malloc_dump -memory_info +==26100== Parent PID: 24048 +==26100== +==26100== +==26100== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26100== Open file descriptor 12: +==26100== at 0x10CF207D: pipe (pipe.c:29) +==26100== by 0x196AD07D: ??? +==26100== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26100== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26100== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26100== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26100== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26100== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26100== by 0x17AFD3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26100== by 0x1732C9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26100== by 0x1765FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26100== by 0x17649C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26100== by 0x176B33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26100== by 0x1716E5: main (TestImmersedBoundaryCellPopulation.cpp:19) +==26100== +==26100== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26100== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26100== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26100== by 0xF137822: ??? +==26100== by 0xF13796F: ??? +==26100== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26100== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26100== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26100== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26100== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26100== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26100== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26100== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26100== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26100== by 0x17AFD3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26100== by 0x1732C9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26100== by 0x1765FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26100== by 0x17649C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26100== by 0x176B33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26100== by 0x1716E5: main (TestImmersedBoundaryCellPopulation.cpp:19) +==26100== +==26100== Open file descriptor 113: +==26100== +==26100== +==26100== Open file descriptor 110: +==26100== +==26100== +==26100== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryCellPopulation_valgrind.txt +==26100== +==26100== +==26100== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26100== +==26100== +==26100== +==26100== HEAP SUMMARY: +==26100== in use at exit: 618,354 bytes in 8,239 blocks +==26100== total heap usage: 114,142 allocs, 105,903 frees, 1,385,784,329 bytes allocated +==26100== +==26100== LEAK SUMMARY: +==26100== definitely lost: 0 bytes in 0 blocks +==26100== indirectly lost: 0 bytes in 0 blocks +==26100== possibly lost: 0 bytes in 0 blocks +==26100== still reachable: 56 bytes in 3 blocks +==26100== suppressed: 618,298 bytes in 8,236 blocks +==26100== Reachable blocks (those to which a pointer was found) are not shown. +==26100== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26100== +==26100== For lists of detected and suppressed errors, rerun with: -s +==26100== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestImmersedBoundaryDivisionRules_valgrind.txt b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryDivisionRules_valgrind.txt new file mode 100644 index 000000000..29cfd1375 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==26107== Memcheck, a memory error detector +==26107== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26107== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26107== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundaryDivisionRules -malloc_debug -malloc_dump -memory_info +==26107== Parent PID: 24048 +==26107== +==26107== +==26107== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26107== Open file descriptor 12: +==26107== at 0x10CF207D: pipe (pipe.c:29) +==26107== by 0x196AD07D: ??? +==26107== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26107== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26107== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26107== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26107== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26107== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26107== by 0x13B60B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26107== by 0x136903: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26107== by 0x138ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26107== by 0x138DD4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26107== by 0x1393E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26107== by 0x135105: main (TestImmersedBoundaryDivisionRules.cpp:18) +==26107== +==26107== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26107== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26107== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26107== by 0xF137822: ??? +==26107== by 0xF13796F: ??? +==26107== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26107== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26107== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26107== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26107== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26107== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26107== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26107== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26107== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26107== by 0x13B60B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26107== by 0x136903: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26107== by 0x138ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26107== by 0x138DD4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26107== by 0x1393E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26107== by 0x135105: main (TestImmersedBoundaryDivisionRules.cpp:18) +==26107== +==26107== Open file descriptor 113: +==26107== +==26107== +==26107== Open file descriptor 110: +==26107== +==26107== +==26107== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryDivisionRules_valgrind.txt +==26107== +==26107== +==26107== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26107== +==26107== +==26107== +==26107== HEAP SUMMARY: +==26107== in use at exit: 618,354 bytes in 8,239 blocks +==26107== total heap usage: 53,311 allocs, 45,072 frees, 1,339,216,847 bytes allocated +==26107== +==26107== LEAK SUMMARY: +==26107== definitely lost: 0 bytes in 0 blocks +==26107== indirectly lost: 0 bytes in 0 blocks +==26107== possibly lost: 0 bytes in 0 blocks +==26107== still reachable: 56 bytes in 3 blocks +==26107== suppressed: 618,298 bytes in 8,236 blocks +==26107== Reachable blocks (those to which a pointer was found) are not shown. +==26107== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26107== +==26107== For lists of detected and suppressed errors, rerun with: -s +==26107== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestImmersedBoundaryElement_valgrind.txt b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryElement_valgrind.txt new file mode 100644 index 000000000..4529e4d25 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryElement_valgrind.txt @@ -0,0 +1,73 @@ +==24862== Memcheck, a memory error detector +==24862== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24862== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24862== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryElement -malloc_debug -malloc_dump -memory_info +==24862== Parent PID: 24048 +==24862== +==24862== +==24862== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24862== Open file descriptor 12: +==24862== at 0x7DC407D: pipe (pipe.c:29) +==24862== by 0x100C307D: ??? +==24862== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24862== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24862== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24862== by 0x667ED38: PetscInitialize (pinit.c:924) +==24862== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24862== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24862== by 0x119A65: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24862== by 0x11544D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24862== by 0x117AA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24862== by 0x117942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24862== by 0x117FD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24862== by 0x113875: main (TestImmersedBoundaryElement.cpp:19) +==24862== +==24862== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24862== at 0x7DC8A1C: __open_nocancel (open64_nocancel.c:39) +==24862== by 0x7D4CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24862== by 0x790E822: ??? +==24862== by 0x790E96F: ??? +==24862== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24862== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24862== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24862== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24862== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24862== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24862== by 0x667ED38: PetscInitialize (pinit.c:924) +==24862== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24862== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24862== by 0x119A65: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24862== by 0x11544D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24862== by 0x117AA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24862== by 0x117942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24862== by 0x117FD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24862== by 0x113875: main (TestImmersedBoundaryElement.cpp:19) +==24862== +==24862== Open file descriptor 113: +==24862== +==24862== +==24862== Open file descriptor 110: +==24862== +==24862== +==24862== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryElement_valgrind.txt +==24862== +==24862== +==24862== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24862== +==24862== +==24862== +==24862== HEAP SUMMARY: +==24862== in use at exit: 618,226 bytes in 8,238 blocks +==24862== total heap usage: 47,352 allocs, 39,114 frees, 1,338,385,749 bytes allocated +==24862== +==24862== LEAK SUMMARY: +==24862== definitely lost: 0 bytes in 0 blocks +==24862== indirectly lost: 0 bytes in 0 blocks +==24862== possibly lost: 0 bytes in 0 blocks +==24862== still reachable: 24 bytes in 2 blocks +==24862== suppressed: 618,202 bytes in 8,236 blocks +==24862== Reachable blocks (those to which a pointer was found) are not shown. +==24862== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24862== +==24862== For lists of detected and suppressed errors, rerun with: -s +==24862== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestImmersedBoundaryFftInterface_valgrind.txt b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryFftInterface_valgrind.txt new file mode 100644 index 000000000..49d7ac983 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryFftInterface_valgrind.txt @@ -0,0 +1,73 @@ +==24870== Memcheck, a memory error detector +==24870== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24870== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24870== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryFftInterface -malloc_debug -malloc_dump -memory_info +==24870== Parent PID: 24048 +==24870== +==24870== +==24870== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24870== Open file descriptor 12: +==24870== at 0x810907D: pipe (pipe.c:29) +==24870== by 0x100C307D: ??? +==24870== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24870== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24870== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24870== by 0x667ED38: PetscInitialize (pinit.c:924) +==24870== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24870== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24870== by 0x11A441: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24870== by 0x115DD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24870== by 0x1184B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24870== by 0x1183B3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24870== by 0x1189C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24870== by 0x1145D5: main (TestImmersedBoundaryFftInterface.cpp:18) +==24870== +==24870== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24870== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24870== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24870== by 0x790E822: ??? +==24870== by 0x790E96F: ??? +==24870== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24870== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24870== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24870== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24870== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24870== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24870== by 0x667ED38: PetscInitialize (pinit.c:924) +==24870== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24870== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24870== by 0x11A441: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24870== by 0x115DD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24870== by 0x1184B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24870== by 0x1183B3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24870== by 0x1189C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24870== by 0x1145D5: main (TestImmersedBoundaryFftInterface.cpp:18) +==24870== +==24870== Open file descriptor 113: +==24870== +==24870== +==24870== Open file descriptor 110: +==24870== +==24870== +==24870== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryFftInterface_valgrind.txt +==24870== +==24870== +==24870== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24870== +==24870== +==24870== +==24870== HEAP SUMMARY: +==24870== in use at exit: 618,226 bytes in 8,238 blocks +==24870== total heap usage: 48,770 allocs, 40,532 frees, 1,346,895,844 bytes allocated +==24870== +==24870== LEAK SUMMARY: +==24870== definitely lost: 0 bytes in 0 blocks +==24870== indirectly lost: 0 bytes in 0 blocks +==24870== possibly lost: 0 bytes in 0 blocks +==24870== still reachable: 24 bytes in 2 blocks +==24870== suppressed: 618,202 bytes in 8,236 blocks +==24870== Reachable blocks (those to which a pointer was found) are not shown. +==24870== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24870== +==24870== For lists of detected and suppressed errors, rerun with: -s +==24870== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestImmersedBoundaryForces_valgrind.txt b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryForces_valgrind.txt new file mode 100644 index 000000000..3f2358ed8 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryForces_valgrind.txt @@ -0,0 +1,73 @@ +==26114== Memcheck, a memory error detector +==26114== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26114== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26114== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundaryForces -malloc_debug -malloc_dump -memory_info +==26114== Parent PID: 24048 +==26114== +==26114== +==26114== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26114== Open file descriptor 12: +==26114== at 0x10D8107D: pipe (pipe.c:29) +==26114== by 0x196AD07D: ??? +==26114== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26114== by 0x10689418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26114== by 0x10622D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26114== by 0xF319D38: PetscInitialize (pinit.c:924) +==26114== by 0xF18B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26114== by 0xF18B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26114== by 0x14A869: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26114== by 0x1430BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26114== by 0x145F70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26114== by 0x145E10: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26114== by 0x1464A7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26114== by 0x1414E5: main (TestImmersedBoundaryForces.cpp:19) +==26114== +==26114== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26114== at 0x10D85A1C: __open_nocancel (open64_nocancel.c:39) +==26114== by 0x10D09BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26114== by 0xF1C6822: ??? +==26114== by 0xF1C696F: ??? +==26114== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26114== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26114== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26114== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26114== by 0x10689418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26114== by 0x10622D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26114== by 0xF319D38: PetscInitialize (pinit.c:924) +==26114== by 0xF18B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26114== by 0xF18B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26114== by 0x14A869: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26114== by 0x1430BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26114== by 0x145F70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26114== by 0x145E10: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26114== by 0x1464A7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26114== by 0x1414E5: main (TestImmersedBoundaryForces.cpp:19) +==26114== +==26114== Open file descriptor 113: +==26114== +==26114== +==26114== Open file descriptor 110: +==26114== +==26114== +==26114== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryForces_valgrind.txt +==26114== +==26114== +==26114== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26114== +==26114== +==26114== +==26114== HEAP SUMMARY: +==26114== in use at exit: 618,354 bytes in 8,239 blocks +==26114== total heap usage: 63,281 allocs, 55,042 frees, 1,343,086,362 bytes allocated +==26114== +==26114== LEAK SUMMARY: +==26114== definitely lost: 0 bytes in 0 blocks +==26114== indirectly lost: 0 bytes in 0 blocks +==26114== possibly lost: 0 bytes in 0 blocks +==26114== still reachable: 56 bytes in 3 blocks +==26114== suppressed: 618,298 bytes in 8,236 blocks +==26114== Reachable blocks (those to which a pointer was found) are not shown. +==26114== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26114== +==26114== For lists of detected and suppressed errors, rerun with: -s +==26114== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..95d2bc777 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24879== Memcheck, a memory error detector +==24879== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24879== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24879== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24879== Parent PID: 24048 +==24879== +==24879== +==24879== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24879== Open file descriptor 12: +==24879== at 0x810907D: pipe (pipe.c:29) +==24879== by 0x100C307D: ??? +==24879== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24879== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24879== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24879== by 0x667ED38: PetscInitialize (pinit.c:924) +==24879== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24879== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24879== by 0x11345D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24879== by 0x10EDD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24879== by 0x111410: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24879== by 0x11130B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24879== by 0x11191F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24879== by 0x10D5D5: main (TestImmersedBoundaryHoneycombMeshGenerator.cpp:18) +==24879== +==24879== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24879== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24879== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24879== by 0x790E822: ??? +==24879== by 0x790E96F: ??? +==24879== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24879== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24879== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24879== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24879== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24879== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24879== by 0x667ED38: PetscInitialize (pinit.c:924) +==24879== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24879== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24879== by 0x11345D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24879== by 0x10EDD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24879== by 0x111410: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24879== by 0x11130B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24879== by 0x11191F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24879== by 0x10D5D5: main (TestImmersedBoundaryHoneycombMeshGenerator.cpp:18) +==24879== +==24879== Open file descriptor 113: +==24879== +==24879== +==24879== Open file descriptor 110: +==24879== +==24879== +==24879== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt +==24879== +==24879== +==24879== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24879== +==24879== +==24879== +==24879== HEAP SUMMARY: +==24879== in use at exit: 618,226 bytes in 8,238 blocks +==24879== total heap usage: 51,861 allocs, 43,623 frees, 1,340,453,209 bytes allocated +==24879== +==24879== LEAK SUMMARY: +==24879== definitely lost: 0 bytes in 0 blocks +==24879== indirectly lost: 0 bytes in 0 blocks +==24879== possibly lost: 0 bytes in 0 blocks +==24879== still reachable: 24 bytes in 2 blocks +==24879== suppressed: 618,202 bytes in 8,236 blocks +==24879== Reachable blocks (those to which a pointer was found) are not shown. +==24879== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24879== +==24879== For lists of detected and suppressed errors, rerun with: -s +==24879== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestImmersedBoundaryMeshReader_valgrind.txt b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryMeshReader_valgrind.txt new file mode 100644 index 000000000..dfa1cc563 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24887== Memcheck, a memory error detector +==24887== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24887== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24887== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMeshReader -malloc_debug -malloc_dump -memory_info +==24887== Parent PID: 24048 +==24887== +==24887== +==24887== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24887== Open file descriptor 12: +==24887== at 0x810907D: pipe (pipe.c:29) +==24887== by 0x100C307D: ??? +==24887== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24887== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24887== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24887== by 0x667ED38: PetscInitialize (pinit.c:924) +==24887== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24887== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24887== by 0x119F95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24887== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24887== by 0x117F84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24887== by 0x117E25: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24887== by 0x1184BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24887== by 0x113AB5: main (TestImmersedBoundaryMeshReader.cpp:19) +==24887== +==24887== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24887== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24887== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24887== by 0x790E822: ??? +==24887== by 0x790E96F: ??? +==24887== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24887== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24887== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24887== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24887== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24887== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24887== by 0x667ED38: PetscInitialize (pinit.c:924) +==24887== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24887== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24887== by 0x119F95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24887== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24887== by 0x117F84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24887== by 0x117E25: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24887== by 0x1184BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24887== by 0x113AB5: main (TestImmersedBoundaryMeshReader.cpp:19) +==24887== +==24887== Open file descriptor 113: +==24887== +==24887== +==24887== Open file descriptor 110: +==24887== +==24887== +==24887== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMeshReader_valgrind.txt +==24887== +==24887== +==24887== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24887== +==24887== +==24887== +==24887== HEAP SUMMARY: +==24887== in use at exit: 618,226 bytes in 8,238 blocks +==24887== total heap usage: 49,718 allocs, 41,480 frees, 1,339,666,426 bytes allocated +==24887== +==24887== LEAK SUMMARY: +==24887== definitely lost: 0 bytes in 0 blocks +==24887== indirectly lost: 0 bytes in 0 blocks +==24887== possibly lost: 0 bytes in 0 blocks +==24887== still reachable: 24 bytes in 2 blocks +==24887== suppressed: 618,202 bytes in 8,236 blocks +==24887== Reachable blocks (those to which a pointer was found) are not shown. +==24887== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24887== +==24887== For lists of detected and suppressed errors, rerun with: -s +==24887== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestImmersedBoundaryMeshWriter_valgrind.txt b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryMeshWriter_valgrind.txt new file mode 100644 index 000000000..b44e27be3 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryMeshWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24900== Memcheck, a memory error detector +==24900== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24900== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24900== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMeshWriter -malloc_debug -malloc_dump -memory_info +==24900== Parent PID: 24048 +==24900== +==24900== +==24900== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24900== Open file descriptor 12: +==24900== at 0x81F007D: pipe (pipe.c:29) +==24900== by 0x100C307D: ??? +==24900== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24900== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24900== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24900== by 0x667ED38: PetscInitialize (pinit.c:924) +==24900== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24900== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24900== by 0x12285F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24900== by 0x11C5F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24900== by 0x11EE24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24900== by 0x11ED1F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24900== by 0x11F333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24900== by 0x11ADF5: main (TestImmersedBoundaryMeshWriter.cpp:18) +==24900== +==24900== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24900== at 0x81F4A1C: __open_nocancel (open64_nocancel.c:39) +==24900== by 0x8178BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24900== by 0x790E822: ??? +==24900== by 0x790E96F: ??? +==24900== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24900== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24900== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24900== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24900== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24900== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24900== by 0x667ED38: PetscInitialize (pinit.c:924) +==24900== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24900== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24900== by 0x12285F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24900== by 0x11C5F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24900== by 0x11EE24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24900== by 0x11ED1F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24900== by 0x11F333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24900== by 0x11ADF5: main (TestImmersedBoundaryMeshWriter.cpp:18) +==24900== +==24900== Open file descriptor 113: +==24900== +==24900== +==24900== Open file descriptor 110: +==24900== +==24900== +==24900== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMeshWriter_valgrind.txt +==24900== +==24900== +==24900== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24900== +==24900== +==24900== +==24900== HEAP SUMMARY: +==24900== in use at exit: 618,226 bytes in 8,238 blocks +==24900== total heap usage: 49,813 allocs, 41,575 frees, 1,339,464,148 bytes allocated +==24900== +==24900== LEAK SUMMARY: +==24900== definitely lost: 0 bytes in 0 blocks +==24900== indirectly lost: 0 bytes in 0 blocks +==24900== possibly lost: 0 bytes in 0 blocks +==24900== still reachable: 24 bytes in 2 blocks +==24900== suppressed: 618,202 bytes in 8,236 blocks +==24900== Reachable blocks (those to which a pointer was found) are not shown. +==24900== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24900== +==24900== For lists of detected and suppressed errors, rerun with: -s +==24900== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestImmersedBoundaryMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryMesh_valgrind.txt new file mode 100644 index 000000000..777af1d26 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24886== Memcheck, a memory error detector +==24886== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24886== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24886== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMesh -malloc_debug -malloc_dump -memory_info +==24886== Parent PID: 24048 +==24886== +==24886== +==24886== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24886== Open file descriptor 12: +==24886== at 0x82C307D: pipe (pipe.c:29) +==24886== by 0x100C507D: ??? +==24886== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24886== by 0x7AE4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24886== by 0x7A7DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24886== by 0x6774D38: PetscInitialize (pinit.c:924) +==24886== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24886== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24886== by 0x161451: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24886== by 0x15BC59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24886== by 0x15EDDE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24886== by 0x15EC7F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24886== by 0x15F315: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24886== by 0x15A075: main (TestImmersedBoundaryMesh.cpp:19) +==24886== +==24886== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24886== at 0x82C7A1C: __open_nocancel (open64_nocancel.c:39) +==24886== by 0x824BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24886== by 0x661F822: ??? +==24886== by 0x661F96F: ??? +==24886== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24886== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24886== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24886== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24886== by 0x7AE4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24886== by 0x7A7DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24886== by 0x6774D38: PetscInitialize (pinit.c:924) +==24886== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24886== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24886== by 0x161451: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24886== by 0x15BC59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24886== by 0x15EDDE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24886== by 0x15EC7F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24886== by 0x15F315: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24886== by 0x15A075: main (TestImmersedBoundaryMesh.cpp:19) +==24886== +==24886== Open file descriptor 113: +==24886== +==24886== +==24886== Open file descriptor 110: +==24886== +==24886== +==24886== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMesh_valgrind.txt +==24886== +==24886== +==24886== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24886== +==24886== +==24886== +==24886== HEAP SUMMARY: +==24886== in use at exit: 620,778 bytes in 8,239 blocks +==24886== total heap usage: 94,788 allocs, 86,549 frees, 1,370,840,518 bytes allocated +==24886== +==24886== LEAK SUMMARY: +==24886== definitely lost: 0 bytes in 0 blocks +==24886== indirectly lost: 0 bytes in 0 blocks +==24886== possibly lost: 0 bytes in 0 blocks +==24886== still reachable: 2,576 bytes in 3 blocks +==24886== suppressed: 618,202 bytes in 8,236 blocks +==24886== Reachable blocks (those to which a pointer was found) are not shown. +==24886== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24886== +==24886== For lists of detected and suppressed errors, rerun with: -s +==24886== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt new file mode 100644 index 000000000..22c704926 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24902== Memcheck, a memory error detector +==24902== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24902== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24902== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryPalisadeMeshGenerator -malloc_debug -malloc_dump -memory_info +==24902== Parent PID: 24048 +==24902== +==24902== +==24902== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24902== Open file descriptor 12: +==24902== at 0x810907D: pipe (pipe.c:29) +==24902== by 0x100C307D: ??? +==24902== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24902== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24902== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24902== by 0x667ED38: PetscInitialize (pinit.c:924) +==24902== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24902== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24902== by 0x114D1D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24902== by 0x1103ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24902== by 0x112D9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24902== by 0x112C3A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24902== by 0x1132D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24902== by 0x10E815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) +==24902== +==24902== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24902== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24902== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24902== by 0x790E822: ??? +==24902== by 0x790E96F: ??? +==24902== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24902== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24902== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24902== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24902== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24902== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24902== by 0x667ED38: PetscInitialize (pinit.c:924) +==24902== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24902== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24902== by 0x114D1D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24902== by 0x1103ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24902== by 0x112D9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24902== by 0x112C3A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24902== by 0x1132D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24902== by 0x10E815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) +==24902== +==24902== Open file descriptor 113: +==24902== +==24902== +==24902== Open file descriptor 110: +==24902== +==24902== +==24902== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt +==24902== +==24902== +==24902== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24902== +==24902== +==24902== +==24902== HEAP SUMMARY: +==24902== in use at exit: 620,778 bytes in 8,239 blocks +==24902== total heap usage: 57,742 allocs, 49,503 frees, 1,359,243,608 bytes allocated +==24902== +==24902== LEAK SUMMARY: +==24902== definitely lost: 0 bytes in 0 blocks +==24902== indirectly lost: 0 bytes in 0 blocks +==24902== possibly lost: 0 bytes in 0 blocks +==24902== still reachable: 2,576 bytes in 3 blocks +==24902== suppressed: 618,202 bytes in 8,236 blocks +==24902== Reachable blocks (those to which a pointer was found) are not shown. +==24902== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24902== +==24902== For lists of detected and suppressed errors, rerun with: -s +==24902== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestImmersedBoundarySimulationModifier_valgrind.txt b/log-files/2024-09-23_05-40-48/TestImmersedBoundarySimulationModifier_valgrind.txt new file mode 100644 index 000000000..f3fbdf6b7 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestImmersedBoundarySimulationModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26500== Memcheck, a memory error detector +==26500== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26500== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26500== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundarySimulationModifier -malloc_debug -malloc_dump -memory_info +==26500== Parent PID: 24048 +==26500== +==26500== +==26500== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26500== Open file descriptor 12: +==26500== at 0x10CF207D: pipe (pipe.c:29) +==26500== by 0x196AD07D: ??? +==26500== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26500== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26500== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26500== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26500== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26500== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26500== by 0x15313B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26500== by 0x14B9ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26500== by 0x14EA8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26500== by 0x14E92E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26500== by 0x14EFC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26500== by 0x149E15: main (TestImmersedBoundarySimulationModifier.cpp:19) +==26500== +==26500== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26500== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26500== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26500== by 0xF137822: ??? +==26500== by 0xF13796F: ??? +==26500== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26500== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26500== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26500== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26500== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26500== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26500== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26500== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26500== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26500== by 0x15313B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26500== by 0x14B9ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26500== by 0x14EA8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26500== by 0x14E92E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26500== by 0x14EFC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26500== by 0x149E15: main (TestImmersedBoundarySimulationModifier.cpp:19) +==26500== +==26500== Open file descriptor 113: +==26500== +==26500== +==26500== Open file descriptor 110: +==26500== +==26500== +==26500== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundarySimulationModifier_valgrind.txt +==26500== +==26500== +==26500== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26500== +==26500== +==26500== +==26500== HEAP SUMMARY: +==26500== in use at exit: 618,281 bytes in 8,235 blocks +==26500== total heap usage: 3,405,972 allocs, 3,397,737 frees, 1,588,212,044 bytes allocated +==26500== +==26500== LEAK SUMMARY: +==26500== definitely lost: 0 bytes in 0 blocks +==26500== indirectly lost: 0 bytes in 0 blocks +==26500== possibly lost: 0 bytes in 0 blocks +==26500== still reachable: 56 bytes in 3 blocks +==26500== suppressed: 618,225 bytes in 8,232 blocks +==26500== Reachable blocks (those to which a pointer was found) are not shown. +==26500== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26500== +==26500== For lists of detected and suppressed errors, rerun with: -s +==26500== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestImmersedBoundarySvgWriter_valgrind.txt b/log-files/2024-09-23_05-40-48/TestImmersedBoundarySvgWriter_valgrind.txt new file mode 100644 index 000000000..86011e810 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestImmersedBoundarySvgWriter_valgrind.txt @@ -0,0 +1,73 @@ +==26513== Memcheck, a memory error detector +==26513== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26513== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26513== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundarySvgWriter -malloc_debug -malloc_dump -memory_info +==26513== Parent PID: 24048 +==26513== +==26513== +==26513== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26513== Open file descriptor 12: +==26513== at 0x10CF207D: pipe (pipe.c:29) +==26513== by 0x196AD07D: ??? +==26513== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26513== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26513== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26513== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26513== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26513== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26513== by 0x1430FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26513== by 0x13BF73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26513== by 0x13ECEA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26513== by 0x13EBE5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26513== by 0x13F1F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26513== by 0x13A775: main (TestImmersedBoundarySvgWriter.cpp:18) +==26513== +==26513== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26513== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26513== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26513== by 0xF137822: ??? +==26513== by 0xF13796F: ??? +==26513== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26513== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26513== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26513== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26513== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26513== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26513== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26513== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26513== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26513== by 0x1430FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26513== by 0x13BF73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26513== by 0x13ECEA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26513== by 0x13EBE5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26513== by 0x13F1F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26513== by 0x13A775: main (TestImmersedBoundarySvgWriter.cpp:18) +==26513== +==26513== Open file descriptor 113: +==26513== +==26513== +==26513== Open file descriptor 110: +==26513== +==26513== +==26513== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundarySvgWriter_valgrind.txt +==26513== +==26513== +==26513== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26513== +==26513== +==26513== +==26513== HEAP SUMMARY: +==26513== in use at exit: 620,874 bytes in 8,239 blocks +==26513== total heap usage: 53,574 allocs, 45,335 frees, 1,339,070,884 bytes allocated +==26513== +==26513== LEAK SUMMARY: +==26513== definitely lost: 0 bytes in 0 blocks +==26513== indirectly lost: 0 bytes in 0 blocks +==26513== possibly lost: 0 bytes in 0 blocks +==26513== still reachable: 2,576 bytes in 3 blocks +==26513== suppressed: 618,298 bytes in 8,236 blocks +==26513== Reachable blocks (those to which a pointer was found) are not shown. +==26513== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26513== +==26513== For lists of detected and suppressed errors, rerun with: -s +==26513== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestImpedancePostProcessor_valgrind.txt b/log-files/2024-09-23_05-40-48/TestImpedancePostProcessor_valgrind.txt new file mode 100644 index 000000000..18a878436 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestImpedancePostProcessor_valgrind.txt @@ -0,0 +1,36 @@ +==41116== Memcheck, a memory error detector +==41116== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41116== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41116== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestImpedancePostProcessor -malloc_debug -malloc_dump -memory_info +==41116== Parent PID: 24048 +==41116== +==41116== +==41116== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41116== Open file descriptor 113: +==41116== +==41116== +==41116== Open file descriptor 110: +==41116== +==41116== +==41116== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImpedancePostProcessor_valgrind.txt +==41116== +==41116== +==41116== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41116== +==41116== +==41116== +==41116== HEAP SUMMARY: +==41116== in use at exit: 24 bytes in 2 blocks +==41116== total heap usage: 5,749 allocs, 5,747 frees, 616,797 bytes allocated +==41116== +==41116== LEAK SUMMARY: +==41116== definitely lost: 0 bytes in 0 blocks +==41116== indirectly lost: 0 bytes in 0 blocks +==41116== possibly lost: 0 bytes in 0 blocks +==41116== still reachable: 24 bytes in 2 blocks +==41116== suppressed: 0 bytes in 0 blocks +==41116== Reachable blocks (those to which a pointer was found) are not shown. +==41116== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41116== +==41116== For lists of detected and suppressed errors, rerun with: -s +==41116== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-23_05-40-48/TestImplicitCardiacMechanicsSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestImplicitCardiacMechanicsSolver_valgrind.txt new file mode 100644 index 000000000..1c1b9e9a3 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestImplicitCardiacMechanicsSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43324== Memcheck, a memory error detector +==43324== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43324== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43324== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestImplicitCardiacMechanicsSolver -malloc_debug -malloc_dump -memory_info +==43324== Parent PID: 24048 +==43324== +==43324== +==43324== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43324== Open file descriptor 12: +==43324== at 0xBF1F07D: pipe (pipe.c:29) +==43324== by 0x1432607D: ??? +==43324== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43324== by 0xC11C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43324== by 0xC0B5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43324== by 0xA4CAD38: PetscInitialize (pinit.c:924) +==43324== by 0xA3A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43324== by 0xA3A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43324== by 0x12D058: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43324== by 0x127F95: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43324== by 0x12ABEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43324== by 0x12AA8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43324== by 0x12B123: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43324== by 0x126275: main (TestImplicitCardiacMechanicsSolver.cpp:19) +==43324== +==43324== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43324== at 0xBF23A1C: __open_nocancel (open64_nocancel.c:39) +==43324== by 0xBEA7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43324== by 0xB75A822: ??? +==43324== by 0xB75A96F: ??? +==43324== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43324== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43324== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43324== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43324== by 0xC11C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43324== by 0xC0B5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43324== by 0xA4CAD38: PetscInitialize (pinit.c:924) +==43324== by 0xA3A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43324== by 0xA3A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43324== by 0x12D058: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43324== by 0x127F95: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43324== by 0x12ABEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43324== by 0x12AA8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43324== by 0x12B123: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43324== by 0x126275: main (TestImplicitCardiacMechanicsSolver.cpp:19) +==43324== +==43324== Open file descriptor 113: +==43324== +==43324== +==43324== Open file descriptor 110: +==43324== +==43324== +==43324== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImplicitCardiacMechanicsSolver_valgrind.txt +==43324== +==43324== +==43324== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43324== +==43324== +==43324== +==43324== HEAP SUMMARY: +==43324== in use at exit: 618,265 bytes in 8,234 blocks +==43324== total heap usage: 1,348,935 allocs, 1,340,701 frees, 1,479,981,650 bytes allocated +==43324== +==43324== LEAK SUMMARY: +==43324== definitely lost: 0 bytes in 0 blocks +==43324== indirectly lost: 0 bytes in 0 blocks +==43324== possibly lost: 0 bytes in 0 blocks +==43324== still reachable: 24 bytes in 2 blocks +==43324== suppressed: 618,241 bytes in 8,232 blocks +==43324== Reachable blocks (those to which a pointer was found) are not shown. +==43324== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43324== +==43324== For lists of detected and suppressed errors, rerun with: -s +==43324== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestIncompressibleNonlinearElasticitySolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestIncompressibleNonlinearElasticitySolver_valgrind.txt new file mode 100644 index 000000000..0fabba584 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestIncompressibleNonlinearElasticitySolver_valgrind.txt @@ -0,0 +1,73 @@ +==25351== Memcheck, a memory error detector +==25351== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25351== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25351== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestIncompressibleNonlinearElasticitySolver -malloc_debug -malloc_dump -memory_info +==25351== Parent PID: 24048 +==25351== +==25351== +==25351== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25351== Open file descriptor 12: +==25351== at 0x840107D: pipe (pipe.c:29) +==25351== by 0x106D707D: ??? +==25351== by 0xBF1F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25351== by 0x7C22418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25351== by 0x7BBBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25351== by 0x688FD38: PetscInitialize (pinit.c:924) +==25351== by 0x67661D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25351== by 0x6766227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25351== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25351== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25351== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25351== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25351== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25351== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) +==25351== +==25351== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25351== at 0x8405A1C: __open_nocancel (open64_nocancel.c:39) +==25351== by 0x8389BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25351== by 0x7B1F822: ??? +==25351== by 0x7B1F96F: ??? +==25351== by 0xBFC46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25351== by 0xBFC4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25351== by 0xBF7A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25351== by 0xBF1F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25351== by 0x7C22418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25351== by 0x7BBBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25351== by 0x688FD38: PetscInitialize (pinit.c:924) +==25351== by 0x67661D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25351== by 0x6766227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25351== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25351== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25351== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25351== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25351== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25351== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) +==25351== +==25351== Open file descriptor 113: +==25351== +==25351== +==25351== Open file descriptor 110: +==25351== +==25351== +==25351== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIncompressibleNonlinearElasticitySolver_valgrind.txt +==25351== +==25351== +==25351== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25351== +==25351== +==25351== +==25351== HEAP SUMMARY: +==25351== in use at exit: 618,201 bytes in 8,234 blocks +==25351== total heap usage: 638,258 allocs, 630,024 frees, 1,498,243,278 bytes allocated +==25351== +==25351== LEAK SUMMARY: +==25351== definitely lost: 0 bytes in 0 blocks +==25351== indirectly lost: 0 bytes in 0 blocks +==25351== possibly lost: 0 bytes in 0 blocks +==25351== still reachable: 24 bytes in 2 blocks +==25351== suppressed: 618,177 bytes in 8,232 blocks +==25351== Reachable blocks (those to which a pointer was found) are not shown. +==25351== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25351== +==25351== For lists of detected and suppressed errors, rerun with: -s +==25351== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestIonicModelsWithSacs_valgrind.txt b/log-files/2024-09-23_05-40-48/TestIonicModelsWithSacs_valgrind.txt new file mode 100644 index 000000000..865a6eb55 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestIonicModelsWithSacs_valgrind.txt @@ -0,0 +1,73 @@ +==42545== Memcheck, a memory error detector +==42545== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42545== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42545== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestIonicModelsWithSacs -malloc_debug -malloc_dump -memory_info +==42545== Parent PID: 24048 +==42545== +==42545== +==42545== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42545== Open file descriptor 12: +==42545== at 0x9C6507D: pipe (pipe.c:29) +==42545== by 0x1432407D: ??? +==42545== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42545== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42545== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42545== by 0x8505D38: PetscInitialize (pinit.c:924) +==42545== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42545== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42545== by 0x11A0FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42545== by 0x1145B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42545== by 0x116CB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42545== by 0x116BAD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42545== by 0x1171C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42545== by 0x112DB5: main (TestIonicModelsWithSacs.cpp:18) +==42545== +==42545== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42545== at 0x9C69A1C: __open_nocancel (open64_nocancel.c:39) +==42545== by 0x9BEDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42545== by 0x9795822: ??? +==42545== by 0x979596F: ??? +==42545== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42545== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42545== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42545== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42545== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42545== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42545== by 0x8505D38: PetscInitialize (pinit.c:924) +==42545== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42545== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42545== by 0x11A0FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42545== by 0x1145B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42545== by 0x116CB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42545== by 0x116BAD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42545== by 0x1171C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42545== by 0x112DB5: main (TestIonicModelsWithSacs.cpp:18) +==42545== +==42545== Open file descriptor 113: +==42545== +==42545== +==42545== Open file descriptor 110: +==42545== +==42545== +==42545== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIonicModelsWithSacs_valgrind.txt +==42545== +==42545== +==42545== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42545== +==42545== +==42545== +==42545== HEAP SUMMARY: +==42545== in use at exit: 618,338 bytes in 8,238 blocks +==42545== total heap usage: 481,199 allocs, 472,961 frees, 1,442,367,174 bytes allocated +==42545== +==42545== LEAK SUMMARY: +==42545== definitely lost: 0 bytes in 0 blocks +==42545== indirectly lost: 0 bytes in 0 blocks +==42545== possibly lost: 0 bytes in 0 blocks +==42545== still reachable: 24 bytes in 2 blocks +==42545== suppressed: 618,314 bytes in 8,236 blocks +==42545== Reachable blocks (those to which a pointer was found) are not shown. +==42545== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42545== +==42545== For lists of detected and suppressed errors, rerun with: -s +==42545== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestIonicModels_valgrind.txt b/log-files/2024-09-23_05-40-48/TestIonicModels_valgrind.txt new file mode 100644 index 000000000..ff0f973b5 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestIonicModels_valgrind.txt @@ -0,0 +1,73 @@ +==42077== Memcheck, a memory error detector +==42077== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42077== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42077== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestIonicModels -malloc_debug -malloc_dump -memory_info +==42077== Parent PID: 24048 +==42077== +==42077== +==42077== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42077== Open file descriptor 12: +==42077== at 0x9D1A07D: pipe (pipe.c:29) +==42077== by 0x1432407D: ??? +==42077== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42077== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42077== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42077== by 0x85DDD38: PetscInitialize (pinit.c:924) +==42077== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42077== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42077== by 0x1365FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42077== by 0x130B0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42077== by 0x133AAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42077== by 0x13394E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42077== by 0x133FE5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42077== by 0x12BDA5: main (TestIonicModels.cpp:19) +==42077== +==42077== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42077== at 0x9D1EA1C: __open_nocancel (open64_nocancel.c:39) +==42077== by 0x9CA2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42077== by 0x848A822: ??? +==42077== by 0x848A96F: ??? +==42077== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42077== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42077== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42077== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42077== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42077== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42077== by 0x85DDD38: PetscInitialize (pinit.c:924) +==42077== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42077== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42077== by 0x1365FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42077== by 0x130B0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42077== by 0x133AAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42077== by 0x13394E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42077== by 0x133FE5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42077== by 0x12BDA5: main (TestIonicModels.cpp:19) +==42077== +==42077== Open file descriptor 113: +==42077== +==42077== +==42077== Open file descriptor 110: +==42077== +==42077== +==42077== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIonicModels_valgrind.txt +==42077== +==42077== +==42077== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42077== +==42077== +==42077== +==42077== HEAP SUMMARY: +==42077== in use at exit: 620,045 bytes in 8,238 blocks +==42077== total heap usage: 1,892,201 allocs, 1,883,963 frees, 3,069,793,512 bytes allocated +==42077== +==42077== LEAK SUMMARY: +==42077== definitely lost: 0 bytes in 0 blocks +==42077== indirectly lost: 0 bytes in 0 blocks +==42077== possibly lost: 0 bytes in 0 blocks +==42077== still reachable: 1,804 bytes in 6 blocks +==42077== suppressed: 618,241 bytes in 8,232 blocks +==42077== Reachable blocks (those to which a pointer was found) are not shown. +==42077== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42077== +==42077== For lists of detected and suppressed errors, rerun with: -s +==42077== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestLinearBasisFunction_valgrind.txt b/log-files/2024-09-23_05-40-48/TestLinearBasisFunction_valgrind.txt new file mode 100644 index 000000000..8110267d2 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestLinearBasisFunction_valgrind.txt @@ -0,0 +1,73 @@ +==25225== Memcheck, a memory error detector +==25225== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25225== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25225== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearBasisFunction -malloc_debug -malloc_dump -memory_info +==25225== Parent PID: 24048 +==25225== +==25225== +==25225== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25225== Open file descriptor 12: +==25225== at 0x6CAC07D: pipe (pipe.c:29) +==25225== by 0x104D507D: ??? +==25225== by 0xC31D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25225== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25225== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25225== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25225== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25225== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25225== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25225== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25225== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25225== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25225== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25225== by 0x11B875: main (TestLinearBasisFunction.cpp:18) +==25225== +==25225== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25225== at 0x6CB0A1C: __open_nocancel (open64_nocancel.c:39) +==25225== by 0x6C34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25225== by 0x692F822: ??? +==25225== by 0x692F96F: ??? +==25225== by 0xC3C26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25225== by 0xC3C2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25225== by 0xC378922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25225== by 0xC31D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25225== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25225== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25225== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25225== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25225== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25225== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25225== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25225== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25225== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25225== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25225== by 0x11B875: main (TestLinearBasisFunction.cpp:18) +==25225== +==25225== Open file descriptor 113: +==25225== +==25225== +==25225== Open file descriptor 110: +==25225== +==25225== +==25225== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearBasisFunction_valgrind.txt +==25225== +==25225== +==25225== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25225== +==25225== +==25225== +==25225== HEAP SUMMARY: +==25225== in use at exit: 618,258 bytes in 8,238 blocks +==25225== total heap usage: 47,356 allocs, 39,118 frees, 1,338,386,974 bytes allocated +==25225== +==25225== LEAK SUMMARY: +==25225== definitely lost: 0 bytes in 0 blocks +==25225== indirectly lost: 0 bytes in 0 blocks +==25225== possibly lost: 0 bytes in 0 blocks +==25225== still reachable: 24 bytes in 2 blocks +==25225== suppressed: 618,234 bytes in 8,236 blocks +==25225== Reachable blocks (those to which a pointer was found) are not shown. +==25225== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25225== +==25225== For lists of detected and suppressed errors, rerun with: -s +==25225== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt new file mode 100644 index 000000000..37ca487b7 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25057== Memcheck, a memory error detector +==25057== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25057== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25057== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearParabolicPdeSystemForCoupledOdeSystem -malloc_debug -malloc_dump -memory_info +==25057== Parent PID: 24048 +==25057== +==25057== +==25057== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25057== Open file descriptor 12: +==25057== at 0x7DC407D: pipe (pipe.c:29) +==25057== by 0x100C307D: ??? +==25057== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25057== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25057== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25057== by 0x6680D38: PetscInitialize (pinit.c:924) +==25057== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25057== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25057== by 0x1173E3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25057== by 0x112E53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25057== by 0x11519C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25057== by 0x115097: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25057== by 0x1156AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25057== by 0x111655: main (TestLinearParabolicPdeSystemForCoupledOdeSystem.cpp:18) +==25057== +==25057== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25057== at 0x7DC8A1C: __open_nocancel (open64_nocancel.c:39) +==25057== by 0x7D4CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25057== by 0x7910822: ??? +==25057== by 0x791096F: ??? +==25057== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25057== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25057== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25057== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25057== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25057== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25057== by 0x6680D38: PetscInitialize (pinit.c:924) +==25057== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25057== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25057== by 0x1173E3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25057== by 0x112E53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25057== by 0x11519C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25057== by 0x115097: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25057== by 0x1156AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25057== by 0x111655: main (TestLinearParabolicPdeSystemForCoupledOdeSystem.cpp:18) +==25057== +==25057== Open file descriptor 113: +==25057== +==25057== +==25057== Open file descriptor 110: +==25057== +==25057== +==25057== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt +==25057== +==25057== +==25057== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25057== +==25057== +==25057== +==25057== HEAP SUMMARY: +==25057== in use at exit: 618,226 bytes in 8,238 blocks +==25057== total heap usage: 47,305 allocs, 39,067 frees, 1,338,381,253 bytes allocated +==25057== +==25057== LEAK SUMMARY: +==25057== definitely lost: 0 bytes in 0 blocks +==25057== indirectly lost: 0 bytes in 0 blocks +==25057== possibly lost: 0 bytes in 0 blocks +==25057== still reachable: 24 bytes in 2 blocks +==25057== suppressed: 618,202 bytes in 8,236 blocks +==25057== Reachable blocks (those to which a pointer was found) are not shown. +==25057== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25057== +==25057== For lists of detected and suppressed errors, rerun with: -s +==25057== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt new file mode 100644 index 000000000..47fb609a1 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25071== Memcheck, a memory error detector +==25071== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25071== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25071== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver -malloc_debug -malloc_dump -memory_info +==25071== Parent PID: 24048 +==25071== +==25071== +==25071== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25071== Open file descriptor 12: +==25071== at 0x87B607D: pipe (pipe.c:29) +==25071== by 0x1080507D: ??? +==25071== by 0xC6194CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25071== by 0x8DAA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25071== by 0x8D43D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25071== by 0x6D61D38: PetscInitialize (pinit.c:924) +==25071== by 0x6C381D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25071== by 0x6C38227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25071== by 0x199CB4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25071== by 0x191511: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25071== by 0x1949B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25071== by 0x194858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25071== by 0x194EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25071== by 0x18F635: main (TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver.cpp:19) +==25071== +==25071== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25071== at 0x87BAA1C: __open_nocancel (open64_nocancel.c:39) +==25071== by 0x873EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25071== by 0x7FF1822: ??? +==25071== by 0x7FF196F: ??? +==25071== by 0xC6BE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25071== by 0xC6BE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25071== by 0xC674922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25071== by 0xC6192DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25071== by 0x8DAA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25071== by 0x8D43D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25071== by 0x6D61D38: PetscInitialize (pinit.c:924) +==25071== by 0x6C381D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25071== by 0x6C38227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25071== by 0x199CB4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25071== by 0x191511: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25071== by 0x1949B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25071== by 0x194858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25071== by 0x194EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25071== by 0x18F635: main (TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver.cpp:19) +==25071== +==25071== Open file descriptor 113: +==25071== +==25071== +==25071== Open file descriptor 110: +==25071== +==25071== +==25071== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt +==25071== +==25071== +==25071== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25071== +==25071== +==25071== +==25071== HEAP SUMMARY: +==25071== in use at exit: 620,785 bytes in 8,235 blocks +==25071== total heap usage: 2,554,387 allocs, 2,546,152 frees, 1,577,429,648 bytes allocated +==25071== +==25071== LEAK SUMMARY: +==25071== definitely lost: 0 bytes in 0 blocks +==25071== indirectly lost: 0 bytes in 0 blocks +==25071== possibly lost: 0 bytes in 0 blocks +==25071== still reachable: 2,576 bytes in 3 blocks +==25071== suppressed: 618,209 bytes in 8,232 blocks +==25071== Reachable blocks (those to which a pointer was found) are not shown. +==25071== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25071== +==25071== For lists of detected and suppressed errors, rerun with: -s +==25071== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2024-09-23_05-40-48/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt b/log-files/2024-09-23_05-40-48/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt new file mode 100644 index 000000000..7abb733f0 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt @@ -0,0 +1,73 @@ +==40417== Memcheck, a memory error detector +==40417== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40417== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40417== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestLinearSpringWithVariableSpringConstantsForce -malloc_debug -malloc_dump -memory_info +==40417== Parent PID: 24048 +==40417== +==40417== +==40417== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40417== Open file descriptor 12: +==40417== at 0x111E407D: pipe (pipe.c:29) +==40417== by 0x1B36F07D: ??? +==40417== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40417== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40417== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40417== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40417== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40417== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40417== by 0x165A7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40417== by 0x15DE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40417== by 0x160FB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40417== by 0x160E58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40417== by 0x1614EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40417== by 0x15C295: main (TestLinearSpringWithVariableSpringConstantsForce.cpp:19) +==40417== +==40417== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40417== at 0x111E8A1C: __open_nocancel (open64_nocancel.c:39) +==40417== by 0x1116CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40417== by 0x109F7822: ??? +==40417== by 0x109F796F: ??? +==40417== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40417== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40417== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40417== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40417== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40417== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40417== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40417== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40417== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40417== by 0x165A7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40417== by 0x15DE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40417== by 0x160FB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40417== by 0x160E58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40417== by 0x1614EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40417== by 0x15C295: main (TestLinearSpringWithVariableSpringConstantsForce.cpp:19) +==40417== +==40417== Open file descriptor 113: +==40417== +==40417== +==40417== Open file descriptor 110: +==40417== +==40417== +==40417== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt +==40417== +==40417== +==40417== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40417== +==40417== +==40417== +==40417== HEAP SUMMARY: +==40417== in use at exit: 618,370 bytes in 8,239 blocks +==40417== total heap usage: 555,644 allocs, 547,405 frees, 1,383,865,698 bytes allocated +==40417== +==40417== LEAK SUMMARY: +==40417== definitely lost: 0 bytes in 0 blocks +==40417== indirectly lost: 0 bytes in 0 blocks +==40417== possibly lost: 0 bytes in 0 blocks +==40417== still reachable: 56 bytes in 3 blocks +==40417== suppressed: 618,314 bytes in 8,236 blocks +==40417== Reachable blocks (those to which a pointer was found) are not shown. +==40417== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40417== +==40417== For lists of detected and suppressed errors, rerun with: -s +==40417== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestLinearSystem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestLinearSystem_valgrind.txt new file mode 100644 index 000000000..596ef5268 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestLinearSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24354== Memcheck, a memory error detector +==24354== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24354== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24354== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestLinearSystem -malloc_debug -malloc_dump -memory_info +==24354== Parent PID: 24048 +==24354== +==24354== +==24354== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24354== Open file descriptor 12: +==24354== at 0x610307D: pipe (pipe.c:29) +==24354== by 0xAF3907D: ??? +==24354== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24354== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24354== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24354== by 0x4B19D38: PetscInitialize (pinit.c:924) +==24354== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24354== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24354== by 0x135370: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24354== by 0x12FAC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24354== by 0x132BF0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24354== by 0x132A90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24354== by 0x133127: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24354== by 0x12DEE5: main (TestLinearSystem.cpp:19) +==24354== +==24354== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24354== at 0x6107A1C: __open_nocancel (open64_nocancel.c:39) +==24354== by 0x608BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24354== by 0x49C4822: ??? +==24354== by 0x49C496F: ??? +==24354== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24354== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24354== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24354== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24354== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24354== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24354== by 0x4B19D38: PetscInitialize (pinit.c:924) +==24354== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24354== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24354== by 0x135370: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24354== by 0x12FAC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24354== by 0x132BF0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24354== by 0x132A90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24354== by 0x133127: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24354== by 0x12DEE5: main (TestLinearSystem.cpp:19) +==24354== +==24354== Open file descriptor 113: +==24354== +==24354== +==24354== Open file descriptor 110: +==24354== +==24354== +==24354== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearSystem_valgrind.txt +==24354== +==24354== +==24354== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24354== +==24354== +==24354== +==24354== HEAP SUMMARY: +==24354== in use at exit: 617,874 bytes in 8,239 blocks +==24354== total heap usage: 59,954 allocs, 51,715 frees, 1,374,857,574 bytes allocated +==24354== +==24354== LEAK SUMMARY: +==24354== definitely lost: 0 bytes in 0 blocks +==24354== indirectly lost: 0 bytes in 0 blocks +==24354== possibly lost: 0 bytes in 0 blocks +==24354== still reachable: 40 bytes in 3 blocks +==24354== suppressed: 617,834 bytes in 8,236 blocks +==24354== Reachable blocks (those to which a pointer was found) are not shown. +==24354== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24354== +==24354== For lists of detected and suppressed errors, rerun with: -s +==24354== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestLobePropertiesCalculator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestLobePropertiesCalculator_valgrind.txt new file mode 100644 index 000000000..00d72ebfa --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestLobePropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==41152== Memcheck, a memory error detector +==41152== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41152== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41152== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestLobePropertiesCalculator -malloc_debug -malloc_dump -memory_info +==41152== Parent PID: 24048 +==41152== +==41152== +==41152== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41152== Open file descriptor 113: +==41152== +==41152== +==41152== Open file descriptor 110: +==41152== +==41152== +==41152== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLobePropertiesCalculator_valgrind.txt +==41152== +==41152== +==41152== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41152== +==41152== +==41152== +==41152== HEAP SUMMARY: +==41152== in use at exit: 24 bytes in 2 blocks +==41152== total heap usage: 134,423 allocs, 134,421 frees, 48,976,308 bytes allocated +==41152== +==41152== LEAK SUMMARY: +==41152== definitely lost: 0 bytes in 0 blocks +==41152== indirectly lost: 0 bytes in 0 blocks +==41152== possibly lost: 0 bytes in 0 blocks +==41152== still reachable: 24 bytes in 2 blocks +==41152== suppressed: 0 bytes in 0 blocks +==41152== Reachable blocks (those to which a pointer was found) are not shown. +==41152== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41152== +==41152== For lists of detected and suppressed errors, rerun with: -s +==41152== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-23_05-40-48/TestLogFile_valgrind.txt b/log-files/2024-09-23_05-40-48/TestLogFile_valgrind.txt new file mode 100644 index 000000000..4756dd729 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestLogFile_valgrind.txt @@ -0,0 +1,73 @@ +==24172== Memcheck, a memory error detector +==24172== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24172== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24172== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestLogFile -malloc_debug -malloc_dump -memory_info +==24172== Parent PID: 24048 +==24172== +==24172== +==24172== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24172== Open file descriptor 12: +==24172== at 0x616907D: pipe (pipe.c:29) +==24172== by 0xAEA507D: ??? +==24172== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24172== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24172== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24172== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24172== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24172== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24172== by 0x11A18F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24172== by 0x11398D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24172== by 0x116442: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24172== by 0x1162E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24172== by 0x116979: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24172== by 0x111DB5: main (TestLogFile.cpp:19) +==24172== +==24172== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24172== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24172== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24172== by 0x5CB3822: ??? +==24172== by 0x5CB396F: ??? +==24172== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24172== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24172== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24172== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24172== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24172== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24172== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24172== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24172== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24172== by 0x11A18F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24172== by 0x11398D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24172== by 0x116442: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24172== by 0x1162E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24172== by 0x116979: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24172== by 0x111DB5: main (TestLogFile.cpp:19) +==24172== +==24172== Open file descriptor 113: +==24172== +==24172== +==24172== Open file descriptor 110: +==24172== +==24172== +==24172== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLogFile_valgrind.txt +==24172== +==24172== +==24172== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24172== +==24172== +==24172== +==24172== HEAP SUMMARY: +==24172== in use at exit: 617,842 bytes in 8,238 blocks +==24172== total heap usage: 45,249 allocs, 37,011 frees, 1,338,411,699 bytes allocated +==24172== +==24172== LEAK SUMMARY: +==24172== definitely lost: 0 bytes in 0 blocks +==24172== indirectly lost: 0 bytes in 0 blocks +==24172== possibly lost: 0 bytes in 0 blocks +==24172== still reachable: 24 bytes in 2 blocks +==24172== suppressed: 617,818 bytes in 8,236 blocks +==24172== Reachable blocks (those to which a pointer was found) are not shown. +==24172== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24172== +==24172== For lists of detected and suppressed errors, rerun with: -s +==24172== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestMajorAirwaysCentreLinesCleaner_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMajorAirwaysCentreLinesCleaner_valgrind.txt new file mode 100644 index 000000000..fd2543a12 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMajorAirwaysCentreLinesCleaner_valgrind.txt @@ -0,0 +1,73 @@ +==41178== Memcheck, a memory error detector +==41178== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41178== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41178== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMajorAirwaysCentreLinesCleaner -malloc_debug -malloc_dump -memory_info +==41178== Parent PID: 24048 +==41178== +==41178== +==41178== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41178== Open file descriptor 12: +==41178== at 0x822907D: pipe (pipe.c:29) +==41178== by 0x107A407D: ??? +==41178== by 0xBFCD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41178== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41178== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41178== by 0x679ED38: PetscInitialize (pinit.c:924) +==41178== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41178== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41178== by 0x11675D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41178== by 0x1121F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41178== by 0x1146F0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41178== by 0x1145EB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41178== by 0x114BFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41178== by 0x1109F5: main (TestMajorAirwaysCentreLinesCleaner.cpp:18) +==41178== +==41178== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41178== at 0x822DA1C: __open_nocancel (open64_nocancel.c:39) +==41178== by 0x81B1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41178== by 0x7A2E822: ??? +==41178== by 0x7A2E96F: ??? +==41178== by 0xC0726DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41178== by 0xC072938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41178== by 0xC028922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41178== by 0xBFCD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41178== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41178== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41178== by 0x679ED38: PetscInitialize (pinit.c:924) +==41178== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41178== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41178== by 0x11675D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41178== by 0x1121F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41178== by 0x1146F0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41178== by 0x1145EB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41178== by 0x114BFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41178== by 0x1109F5: main (TestMajorAirwaysCentreLinesCleaner.cpp:18) +==41178== +==41178== Open file descriptor 113: +==41178== +==41178== +==41178== Open file descriptor 110: +==41178== +==41178== +==41178== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMajorAirwaysCentreLinesCleaner_valgrind.txt +==41178== +==41178== +==41178== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41178== +==41178== +==41178== +==41178== HEAP SUMMARY: +==41178== in use at exit: 618,322 bytes in 8,238 blocks +==41178== total heap usage: 493,346 allocs, 485,108 frees, 1,357,249,696 bytes allocated +==41178== +==41178== LEAK SUMMARY: +==41178== definitely lost: 0 bytes in 0 blocks +==41178== indirectly lost: 0 bytes in 0 blocks +==41178== possibly lost: 0 bytes in 0 blocks +==41178== still reachable: 24 bytes in 2 blocks +==41178== suppressed: 618,298 bytes in 8,236 blocks +==41178== Reachable blocks (those to which a pointer was found) are not shown. +==41178== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41178== +==41178== For lists of detected and suppressed errors, rerun with: -s +==41178== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestMaterialLaws_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMaterialLaws_valgrind.txt new file mode 100644 index 000000000..02025deab --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMaterialLaws_valgrind.txt @@ -0,0 +1,73 @@ +==25359== Memcheck, a memory error detector +==25359== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25359== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25359== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMaterialLaws -malloc_debug -malloc_dump -memory_info +==25359== Parent PID: 24048 +==25359== +==25359== +==25359== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25359== Open file descriptor 12: +==25359== at 0x4F1B07D: pipe (pipe.c:29) +==25359== by 0x106D807D: ??? +==25359== by 0xBFDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25359== by 0x88A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25359== by 0x883FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25359== by 0x71ADD38: PetscInitialize (pinit.c:924) +==25359== by 0x4A7A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25359== by 0x4A7A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25359== by 0x12ADEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25359== by 0x125E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25359== by 0x128AB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25359== by 0x128952: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25359== by 0x128FE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25359== by 0x124255: main (TestMaterialLaws.cpp:19) +==25359== +==25359== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25359== at 0x4F1FA1C: __open_nocancel (open64_nocancel.c:39) +==25359== by 0x4EA3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25359== by 0x4AB5822: ??? +==25359== by 0x4AB596F: ??? +==25359== by 0xC0856DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25359== by 0xC085938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25359== by 0xC03B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25359== by 0xBFDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25359== by 0x88A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25359== by 0x883FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25359== by 0x71ADD38: PetscInitialize (pinit.c:924) +==25359== by 0x4A7A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25359== by 0x4A7A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25359== by 0x12ADEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25359== by 0x125E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25359== by 0x128AB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25359== by 0x128952: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25359== by 0x128FE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25359== by 0x124255: main (TestMaterialLaws.cpp:19) +==25359== +==25359== Open file descriptor 113: +==25359== +==25359== +==25359== Open file descriptor 110: +==25359== +==25359== +==25359== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMaterialLaws_valgrind.txt +==25359== +==25359== +==25359== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25359== +==25359== +==25359== +==25359== HEAP SUMMARY: +==25359== in use at exit: 618,274 bytes in 8,238 blocks +==25359== total heap usage: 47,753 allocs, 39,515 frees, 1,338,429,383 bytes allocated +==25359== +==25359== LEAK SUMMARY: +==25359== definitely lost: 0 bytes in 0 blocks +==25359== indirectly lost: 0 bytes in 0 blocks +==25359== possibly lost: 0 bytes in 0 blocks +==25359== still reachable: 24 bytes in 2 blocks +==25359== suppressed: 618,250 bytes in 8,236 blocks +==25359== Reachable blocks (those to which a pointer was found) are not shown. +==25359== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25359== +==25359== For lists of detected and suppressed errors, rerun with: -s +==25359== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestMathsCustomFunctions_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMathsCustomFunctions_valgrind.txt new file mode 100644 index 000000000..74d593baf --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMathsCustomFunctions_valgrind.txt @@ -0,0 +1,73 @@ +==24198== Memcheck, a memory error detector +==24198== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24198== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24198== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestMathsCustomFunctions -malloc_debug -malloc_dump -memory_info +==24198== Parent PID: 24048 +==24198== +==24198== +==24198== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24198== Open file descriptor 12: +==24198== at 0x4D9B07D: pipe (pipe.c:29) +==24198== by 0xAEA507D: ??? +==24198== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24198== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24198== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24198== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24198== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24198== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24198== by 0x112348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24198== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24198== by 0x110412: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24198== by 0x11030D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24198== by 0x110921: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24198== by 0x10C555: main (TestMathsCustomFunctions.cpp:18) +==24198== +==24198== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24198== at 0x4D9FA1C: __open_nocancel (open64_nocancel.c:39) +==24198== by 0x4D23BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24198== by 0x4935822: ??? +==24198== by 0x493596F: ??? +==24198== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24198== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24198== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24198== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24198== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24198== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24198== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24198== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24198== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24198== by 0x112348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24198== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24198== by 0x110412: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24198== by 0x11030D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24198== by 0x110921: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24198== by 0x10C555: main (TestMathsCustomFunctions.cpp:18) +==24198== +==24198== Open file descriptor 113: +==24198== +==24198== +==24198== Open file descriptor 110: +==24198== +==24198== +==24198== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMathsCustomFunctions_valgrind.txt +==24198== +==24198== +==24198== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24198== +==24198== +==24198== +==24198== HEAP SUMMARY: +==24198== in use at exit: 617,842 bytes in 8,238 blocks +==24198== total heap usage: 44,912 allocs, 36,674 frees, 1,338,160,592 bytes allocated +==24198== +==24198== LEAK SUMMARY: +==24198== definitely lost: 0 bytes in 0 blocks +==24198== indirectly lost: 0 bytes in 0 blocks +==24198== possibly lost: 0 bytes in 0 blocks +==24198== still reachable: 24 bytes in 2 blocks +==24198== suppressed: 617,818 bytes in 8,236 blocks +==24198== Reachable blocks (those to which a pointer was found) are not shown. +==24198== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24198== +==24198== For lists of detected and suppressed errors, rerun with: -s +==24198== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestMatrixVentilationProblem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMatrixVentilationProblem_valgrind.txt new file mode 100644 index 000000000..15c5b449d --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMatrixVentilationProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41207== Memcheck, a memory error detector +==41207== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41207== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41207== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMatrixVentilationProblem -malloc_debug -malloc_dump -memory_info +==41207== Parent PID: 24048 +==41207== +==41207== +==41207== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41207== Open file descriptor 12: +==41207== at 0x81D907D: pipe (pipe.c:29) +==41207== by 0x107A407D: ??? +==41207== by 0xC01A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41207== by 0x83D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41207== by 0x836DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41207== by 0x679ED38: PetscInitialize (pinit.c:924) +==41207== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41207== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41207== by 0x117742: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41207== by 0x1128B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41207== by 0x1155E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41207== by 0x115486: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41207== by 0x115B1D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41207== by 0x110B35: main (TestMatrixVentilationProblem.cpp:19) +==41207== +==41207== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41207== at 0x81DDA1C: __open_nocancel (open64_nocancel.c:39) +==41207== by 0x8161BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41207== by 0x7A2E822: ??? +==41207== by 0x7A2E96F: ??? +==41207== by 0xC0BF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41207== by 0xC0BF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41207== by 0xC075922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41207== by 0xC01A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41207== by 0x83D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41207== by 0x836DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41207== by 0x679ED38: PetscInitialize (pinit.c:924) +==41207== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41207== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41207== by 0x117742: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41207== by 0x1128B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41207== by 0x1155E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41207== by 0x115486: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41207== by 0x115B1D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41207== by 0x110B35: main (TestMatrixVentilationProblem.cpp:19) +==41207== +==41207== Open file descriptor 113: +==41207== +==41207== +==41207== Open file descriptor 110: +==41207== +==41207== +==41207== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMatrixVentilationProblem_valgrind.txt +==41207== +==41207== +==41207== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41207== +==41207== +==41207== +==41207== HEAP SUMMARY: +==41207== in use at exit: 618,322 bytes in 8,238 blocks +==41207== total heap usage: 137,448 allocs, 129,210 frees, 1,515,200,917 bytes allocated +==41207== +==41207== LEAK SUMMARY: +==41207== definitely lost: 0 bytes in 0 blocks +==41207== indirectly lost: 0 bytes in 0 blocks +==41207== possibly lost: 0 bytes in 0 blocks +==41207== still reachable: 24 bytes in 2 blocks +==41207== suppressed: 618,298 bytes in 8,236 blocks +==41207== Reachable blocks (those to which a pointer was found) are not shown. +==41207== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41207== +==41207== For lists of detected and suppressed errors, rerun with: -s +==41207== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestMemfemMeshReader_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMemfemMeshReader_valgrind.txt new file mode 100644 index 000000000..a47d1b52c --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMemfemMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24644== Memcheck, a memory error detector +==24644== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24644== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24644== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMemfemMeshReader -malloc_debug -malloc_dump -memory_info +==24644== Parent PID: 24048 +==24644== +==24644== +==24644== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24644== Open file descriptor 12: +==24644== at 0x6C5407D: pipe (pipe.c:29) +==24644== by 0x100C507D: ??? +==24644== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24644== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24644== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24644== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24644== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24644== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24644== by 0x118FB6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24644== by 0x11470D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24644== by 0x116FF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24644== by 0x116E98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24644== by 0x11752F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24644== by 0x112B35: main (TestMemfemMeshReader.cpp:19) +==24644== +==24644== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24644== at 0x6C58A1C: __open_nocancel (open64_nocancel.c:39) +==24644== by 0x6BDCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24644== by 0x6590822: ??? +==24644== by 0x659096F: ??? +==24644== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24644== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24644== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24644== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24644== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24644== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24644== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24644== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24644== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24644== by 0x118FB6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24644== by 0x11470D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24644== by 0x116FF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24644== by 0x116E98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24644== by 0x11752F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24644== by 0x112B35: main (TestMemfemMeshReader.cpp:19) +==24644== +==24644== Open file descriptor 113: +==24644== +==24644== +==24644== Open file descriptor 110: +==24644== +==24644== +==24644== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMemfemMeshReader_valgrind.txt +==24644== +==24644== +==24644== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24644== +==24644== +==24644== +==24644== HEAP SUMMARY: +==24644== in use at exit: 618,226 bytes in 8,238 blocks +==24644== total heap usage: 87,582 allocs, 79,344 frees, 1,340,445,346 bytes allocated +==24644== +==24644== LEAK SUMMARY: +==24644== definitely lost: 0 bytes in 0 blocks +==24644== indirectly lost: 0 bytes in 0 blocks +==24644== possibly lost: 0 bytes in 0 blocks +==24644== still reachable: 24 bytes in 2 blocks +==24644== suppressed: 618,202 bytes in 8,236 blocks +==24644== Reachable blocks (those to which a pointer was found) are not shown. +==24644== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24644== +==24644== For lists of detected and suppressed errors, rerun with: -s +==24644== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt new file mode 100644 index 000000000..f119a18d6 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt @@ -0,0 +1,73 @@ +==26143== Memcheck, a memory error detector +==26143== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26143== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26143== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMeshBasedCellPopulationWithGhostNodes -malloc_debug -malloc_dump -memory_info +==26143== Parent PID: 24048 +==26143== +==26143== +==26143== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26143== Open file descriptor 12: +==26143== at 0x10D9707D: pipe (pipe.c:29) +==26143== by 0x196AD07D: ??? +==26143== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26143== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26143== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26143== by 0xF225D38: PetscInitialize (pinit.c:924) +==26143== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26143== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26143== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26143== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26143== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26143== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26143== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26143== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) +==26143== +==26143== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26143== at 0x10D9BA1C: __open_nocancel (open64_nocancel.c:39) +==26143== by 0x10D1FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26143== by 0x104B5822: ??? +==26143== by 0x104B596F: ??? +==26143== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26143== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26143== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26143== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26143== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26143== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26143== by 0xF225D38: PetscInitialize (pinit.c:924) +==26143== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26143== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26143== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26143== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26143== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26143== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26143== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26143== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) +==26143== +==26143== Open file descriptor 113: +==26143== +==26143== +==26143== Open file descriptor 110: +==26143== +==26143== +==26143== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt +==26143== +==26143== +==26143== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26143== +==26143== +==26143== +==26143== HEAP SUMMARY: +==26143== in use at exit: 618,354 bytes in 8,239 blocks +==26143== total heap usage: 221,707 allocs, 213,468 frees, 1,363,645,471 bytes allocated +==26143== +==26143== LEAK SUMMARY: +==26143== definitely lost: 0 bytes in 0 blocks +==26143== indirectly lost: 0 bytes in 0 blocks +==26143== possibly lost: 0 bytes in 0 blocks +==26143== still reachable: 56 bytes in 3 blocks +==26143== suppressed: 618,298 bytes in 8,236 blocks +==26143== Reachable blocks (those to which a pointer was found) are not shown. +==26143== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26143== +==26143== For lists of detected and suppressed errors, rerun with: -s +==26143== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestMeshBasedCellPopulation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMeshBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..579276ce2 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMeshBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26142== Memcheck, a memory error detector +==26142== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26142== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26142== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26142== Parent PID: 24048 +==26142== +==26142== +==26142== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26142== Open file descriptor 12: +==26142== at 0xF92407D: pipe (pipe.c:29) +==26142== by 0x196AD07D: ??? +==26142== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26142== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26142== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26142== by 0x10210D38: PetscInitialize (pinit.c:924) +==26142== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26142== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26142== by 0x2EFB7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26142== by 0x2E6539: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26142== by 0x2EAE3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26142== by 0x2EACDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26142== by 0x2EB375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26142== by 0x2E4955: main (TestMeshBasedCellPopulation.cpp:19) +==26142== +==26142== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26142== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==26142== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26142== by 0xF137822: ??? +==26142== by 0xF13796F: ??? +==26142== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26142== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26142== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26142== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26142== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26142== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26142== by 0x10210D38: PetscInitialize (pinit.c:924) +==26142== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26142== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26142== by 0x2EFB7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26142== by 0x2E6539: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26142== by 0x2EAE3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26142== by 0x2EACDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26142== by 0x2EB375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26142== by 0x2E4955: main (TestMeshBasedCellPopulation.cpp:19) +==26142== +==26142== Open file descriptor 113: +==26142== +==26142== +==26142== Open file descriptor 110: +==26142== +==26142== +==26142== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshBasedCellPopulation_valgrind.txt +==26142== +==26142== +==26142== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26142== +==26142== +==26142== +==26142== HEAP SUMMARY: +==26142== in use at exit: 618,354 bytes in 8,239 blocks +==26142== total heap usage: 145,278 allocs, 137,039 frees, 1,366,615,055 bytes allocated +==26142== +==26142== LEAK SUMMARY: +==26142== definitely lost: 0 bytes in 0 blocks +==26142== indirectly lost: 0 bytes in 0 blocks +==26142== possibly lost: 0 bytes in 0 blocks +==26142== still reachable: 56 bytes in 3 blocks +==26142== suppressed: 618,298 bytes in 8,236 blocks +==26142== Reachable blocks (those to which a pointer was found) are not shown. +==26142== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26142== +==26142== For lists of detected and suppressed errors, rerun with: -s +==26142== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestMeshUtilityFunctions_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMeshUtilityFunctions_valgrind.txt new file mode 100644 index 000000000..a0e2542af --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMeshUtilityFunctions_valgrind.txt @@ -0,0 +1,73 @@ +==24687== Memcheck, a memory error detector +==24687== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24687== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24687== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMeshUtilityFunctions -malloc_debug -malloc_dump -memory_info +==24687== Parent PID: 24048 +==24687== +==24687== +==24687== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24687== Open file descriptor 12: +==24687== at 0x699E07D: pipe (pipe.c:29) +==24687== by 0x100C307D: ??? +==24687== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24687== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24687== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24687== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24687== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24687== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24687== by 0x11E530: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24687== by 0x119E33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24687== by 0x11C2F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24687== by 0x11C1F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24687== by 0x11C805: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24687== by 0x118635: main (TestMeshUtilityFunctions.cpp:18) +==24687== +==24687== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24687== at 0x69A2A1C: __open_nocancel (open64_nocancel.c:39) +==24687== by 0x6926BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24687== by 0x661F822: ??? +==24687== by 0x661F96F: ??? +==24687== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24687== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24687== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24687== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24687== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24687== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24687== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24687== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24687== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24687== by 0x11E530: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24687== by 0x119E33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24687== by 0x11C2F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24687== by 0x11C1F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24687== by 0x11C805: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24687== by 0x118635: main (TestMeshUtilityFunctions.cpp:18) +==24687== +==24687== Open file descriptor 113: +==24687== +==24687== +==24687== Open file descriptor 110: +==24687== +==24687== +==24687== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshUtilityFunctions_valgrind.txt +==24687== +==24687== +==24687== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24687== +==24687== +==24687== +==24687== HEAP SUMMARY: +==24687== in use at exit: 620,778 bytes in 8,239 blocks +==24687== total heap usage: 47,348 allocs, 39,109 frees, 1,338,387,288 bytes allocated +==24687== +==24687== LEAK SUMMARY: +==24687== definitely lost: 0 bytes in 0 blocks +==24687== indirectly lost: 0 bytes in 0 blocks +==24687== possibly lost: 0 bytes in 0 blocks +==24687== still reachable: 2,576 bytes in 3 blocks +==24687== suppressed: 618,202 bytes in 8,236 blocks +==24687== Reachable blocks (those to which a pointer was found) are not shown. +==24687== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24687== +==24687== For lists of detected and suppressed errors, rerun with: -s +==24687== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestMeshWriters_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMeshWriters_valgrind.txt new file mode 100644 index 000000000..b78136fb5 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMeshWriters_valgrind.txt @@ -0,0 +1,73 @@ +==24823== Memcheck, a memory error detector +==24823== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24823== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24823== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMeshWriters -malloc_debug -malloc_dump -memory_info +==24823== Parent PID: 24048 +==24823== +==24823== +==24823== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24823== Open file descriptor 12: +==24823== at 0x81F007D: pipe (pipe.c:29) +==24823== by 0x100C307D: ??? +==24823== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24823== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24823== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24823== by 0x667ED38: PetscInitialize (pinit.c:924) +==24823== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24823== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24823== by 0x1482F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24823== by 0x140E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24823== by 0x143F06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24823== by 0x143DA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24823== by 0x14443D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24823== by 0x13F235: main (TestMeshWriters.cpp:19) +==24823== +==24823== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24823== at 0x81F4A1C: __open_nocancel (open64_nocancel.c:39) +==24823== by 0x8178BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24823== by 0x790E822: ??? +==24823== by 0x790E96F: ??? +==24823== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24823== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24823== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24823== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24823== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24823== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24823== by 0x667ED38: PetscInitialize (pinit.c:924) +==24823== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24823== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24823== by 0x1482F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24823== by 0x140E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24823== by 0x143F06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24823== by 0x143DA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24823== by 0x14443D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24823== by 0x13F235: main (TestMeshWriters.cpp:19) +==24823== +==24823== Open file descriptor 113: +==24823== +==24823== +==24823== Open file descriptor 110: +==24823== +==24823== +==24823== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshWriters_valgrind.txt +==24823== +==24823== +==24823== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24823== +==24823== +==24823== +==24823== HEAP SUMMARY: +==24823== in use at exit: 618,226 bytes in 8,238 blocks +==24823== total heap usage: 187,274 allocs, 179,036 frees, 1,352,174,666 bytes allocated +==24823== +==24823== LEAK SUMMARY: +==24823== definitely lost: 0 bytes in 0 blocks +==24823== indirectly lost: 0 bytes in 0 blocks +==24823== possibly lost: 0 bytes in 0 blocks +==24823== still reachable: 24 bytes in 2 blocks +==24823== suppressed: 618,202 bytes in 8,236 blocks +==24823== Reachable blocks (those to which a pointer was found) are not shown. +==24823== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24823== +==24823== For lists of detected and suppressed errors, rerun with: -s +==24823== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestMirams2010WntOdeSystem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMirams2010WntOdeSystem_valgrind.txt new file mode 100644 index 000000000..6d4ec9782 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMirams2010WntOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==40455== Memcheck, a memory error detector +==40455== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40455== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40455== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestMirams2010WntOdeSystem -malloc_debug -malloc_dump -memory_info +==40455== Parent PID: 24048 +==40455== +==40455== +==40455== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40455== Open file descriptor 12: +==40455== at 0xF39D07D: pipe (pipe.c:29) +==40455== by 0x1B36D07D: ??? +==40455== by 0x165814CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40455== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40455== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40455== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40455== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40455== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40455== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40455== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40455== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40455== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40455== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40455== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) +==40455== +==40455== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40455== at 0xF3A1A1C: __open_nocancel (open64_nocancel.c:39) +==40455== by 0xF325BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40455== by 0xEFDE822: ??? +==40455== by 0xEFDE96F: ??? +==40455== by 0x166266DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40455== by 0x16626938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40455== by 0x165DC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40455== by 0x165812DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40455== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40455== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40455== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40455== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40455== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40455== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40455== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40455== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40455== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40455== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40455== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) +==40455== +==40455== Open file descriptor 113: +==40455== +==40455== +==40455== Open file descriptor 110: +==40455== +==40455== +==40455== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMirams2010WntOdeSystem_valgrind.txt +==40455== +==40455== +==40455== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40455== +==40455== +==40455== +==40455== HEAP SUMMARY: +==40455== in use at exit: 618,370 bytes in 8,239 blocks +==40455== total heap usage: 66,832 allocs, 58,593 frees, 1,340,373,436 bytes allocated +==40455== +==40455== LEAK SUMMARY: +==40455== definitely lost: 0 bytes in 0 blocks +==40455== indirectly lost: 0 bytes in 0 blocks +==40455== possibly lost: 0 bytes in 0 blocks +==40455== still reachable: 56 bytes in 3 blocks +==40455== suppressed: 618,314 bytes in 8,236 blocks +==40455== Reachable blocks (those to which a pointer was found) are not shown. +==40455== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40455== +==40455== For lists of detected and suppressed errors, rerun with: -s +==40455== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestMixedDimensionMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMixedDimensionMesh_valgrind.txt new file mode 100644 index 000000000..d85375890 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMixedDimensionMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24456== Memcheck, a memory error detector +==24456== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24456== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24456== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMixedDimensionMesh -malloc_debug -malloc_dump -memory_info +==24456== Parent PID: 24048 +==24456== +==24456== +==24456== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24456== Open file descriptor 12: +==24456== at 0x814B07D: pipe (pipe.c:29) +==24456== by 0x100C507D: ??? +==24456== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24456== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24456== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24456== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24456== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24456== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24456== by 0x125042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24456== by 0x11E27D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24456== by 0x121016: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24456== by 0x120EB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24456== by 0x12154D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24456== by 0x11C6A5: main (TestMixedDimensionMesh.cpp:19) +==24456== +==24456== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24456== at 0x814FA1C: __open_nocancel (open64_nocancel.c:39) +==24456== by 0x80D3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24456== by 0x6590822: ??? +==24456== by 0x659096F: ??? +==24456== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24456== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24456== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24456== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24456== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24456== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24456== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24456== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24456== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24456== by 0x125042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24456== by 0x11E27D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24456== by 0x121016: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24456== by 0x120EB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24456== by 0x12154D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24456== by 0x11C6A5: main (TestMixedDimensionMesh.cpp:19) +==24456== +==24456== Open file descriptor 113: +==24456== +==24456== +==24456== Open file descriptor 110: +==24456== +==24456== +==24456== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMixedDimensionMesh_valgrind.txt +==24456== +==24456== +==24456== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24456== +==24456== +==24456== +==24456== HEAP SUMMARY: +==24456== in use at exit: 618,226 bytes in 8,238 blocks +==24456== total heap usage: 121,798 allocs, 113,560 frees, 1,343,655,598 bytes allocated +==24456== +==24456== LEAK SUMMARY: +==24456== definitely lost: 0 bytes in 0 blocks +==24456== indirectly lost: 0 bytes in 0 blocks +==24456== possibly lost: 0 bytes in 0 blocks +==24456== still reachable: 24 bytes in 2 blocks +==24456== suppressed: 618,202 bytes in 8,236 blocks +==24456== Reachable blocks (those to which a pointer was found) are not shown. +==24456== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24456== +==24456== For lists of detected and suppressed errors, rerun with: -s +==24456== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestMockEulerIvpOdeSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMockEulerIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..083963005 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMockEulerIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24988== Memcheck, a memory error detector +==24988== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24988== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24988== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestMockEulerIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24988== Parent PID: 24048 +==24988== +==24988== +==24988== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24988== Open file descriptor 12: +==24988== at 0x4F5207D: pipe (pipe.c:29) +==24988== by 0xB1E607D: ??? +==24988== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24988== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24988== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24988== by 0x5308D38: PetscInitialize (pinit.c:924) +==24988== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24988== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24988== by 0x123542: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24988== by 0x11E7E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24988== by 0x120D60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24988== by 0x120C5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24988== by 0x12126F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24988== by 0x11CE65: main (TestMockEulerIvpOdeSolver.cpp:18) +==24988== +==24988== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24988== at 0x4F56A1C: __open_nocancel (open64_nocancel.c:39) +==24988== by 0x4EDABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24988== by 0x4B77822: ??? +==24988== by 0x4B7796F: ??? +==24988== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24988== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24988== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24988== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24988== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24988== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24988== by 0x5308D38: PetscInitialize (pinit.c:924) +==24988== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24988== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24988== by 0x123542: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24988== by 0x11E7E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24988== by 0x120D60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24988== by 0x120C5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24988== by 0x12126F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24988== by 0x11CE65: main (TestMockEulerIvpOdeSolver.cpp:18) +==24988== +==24988== Open file descriptor 113: +==24988== +==24988== +==24988== Open file descriptor 110: +==24988== +==24988== +==24988== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMockEulerIvpOdeSolver_valgrind.txt +==24988== +==24988== +==24988== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24988== +==24988== +==24988== +==24988== HEAP SUMMARY: +==24988== in use at exit: 617,906 bytes in 8,238 blocks +==24988== total heap usage: 45,127 allocs, 36,889 frees, 1,338,195,519 bytes allocated +==24988== +==24988== LEAK SUMMARY: +==24988== definitely lost: 0 bytes in 0 blocks +==24988== indirectly lost: 0 bytes in 0 blocks +==24988== possibly lost: 0 bytes in 0 blocks +==24988== still reachable: 24 bytes in 2 blocks +==24988== suppressed: 617,882 bytes in 8,236 blocks +==24988== Reachable blocks (those to which a pointer was found) are not shown. +==24988== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24988== +==24988== For lists of detected and suppressed errors, rerun with: -s +==24988== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestModernCppFeatures_valgrind.txt b/log-files/2024-09-23_05-40-48/TestModernCppFeatures_valgrind.txt new file mode 100644 index 000000000..a456ea1c9 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestModernCppFeatures_valgrind.txt @@ -0,0 +1,73 @@ +==24079== Memcheck, a memory error detector +==24079== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24079== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24079== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestModernCppFeatures -malloc_debug -malloc_dump -memory_info +==24079== Parent PID: 24048 +==24079== +==24079== +==24079== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24079== Open file descriptor 12: +==24079== at 0x616907D: pipe (pipe.c:29) +==24079== by 0xAEA507D: ??? +==24079== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24079== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24079== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24079== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24079== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24079== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24079== by 0x115753: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24079== by 0x111013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24079== by 0x1137AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24079== by 0x1136AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24079== by 0x113CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24079== by 0x10F815: main (TestModernCppFeatures.cpp:18) +==24079== +==24079== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24079== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24079== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24079== by 0x5CB3822: ??? +==24079== by 0x5CB396F: ??? +==24079== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24079== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24079== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24079== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24079== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24079== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24079== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24079== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24079== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24079== by 0x115753: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24079== by 0x111013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24079== by 0x1137AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24079== by 0x1136AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24079== by 0x113CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24079== by 0x10F815: main (TestModernCppFeatures.cpp:18) +==24079== +==24079== Open file descriptor 113: +==24079== +==24079== +==24079== Open file descriptor 110: +==24079== +==24079== +==24079== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestModernCppFeatures_valgrind.txt +==24079== +==24079== +==24079== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24079== +==24079== +==24079== +==24079== HEAP SUMMARY: +==24079== in use at exit: 617,842 bytes in 8,238 blocks +==24079== total heap usage: 44,920 allocs, 36,682 frees, 1,338,161,447 bytes allocated +==24079== +==24079== LEAK SUMMARY: +==24079== definitely lost: 0 bytes in 0 blocks +==24079== indirectly lost: 0 bytes in 0 blocks +==24079== possibly lost: 0 bytes in 0 blocks +==24079== still reachable: 24 bytes in 2 blocks +==24079== suppressed: 617,818 bytes in 8,236 blocks +==24079== Reachable blocks (those to which a pointer was found) are not shown. +==24079== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24079== +==24079== For lists of detected and suppressed errors, rerun with: -s +==24079== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestModifiers_valgrind.txt b/log-files/2024-09-23_05-40-48/TestModifiers_valgrind.txt new file mode 100644 index 000000000..8f271d7a6 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestModifiers_valgrind.txt @@ -0,0 +1,73 @@ +==42675== Memcheck, a memory error detector +==42675== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42675== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42675== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestModifiers -malloc_debug -malloc_dump -memory_info +==42675== Parent PID: 24048 +==42675== +==42675== +==42675== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42675== Open file descriptor 12: +==42675== at 0x88D907D: pipe (pipe.c:29) +==42675== by 0x1432407D: ??? +==42675== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42675== by 0x9FD2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42675== by 0x9F6BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42675== by 0x8C62D38: PetscInitialize (pinit.c:924) +==42675== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42675== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42675== by 0x124F74: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==42675== by 0x11FB1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42675== by 0x12265E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42675== by 0x1224FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42675== by 0x122B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42675== by 0x11DF45: main (TestModifiers.cpp:19) +==42675== +==42675== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42675== at 0x88DDA1C: __open_nocancel (open64_nocancel.c:39) +==42675== by 0x8861BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42675== by 0x8417822: ??? +==42675== by 0x841796F: ??? +==42675== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42675== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42675== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42675== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42675== by 0x9FD2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42675== by 0x9F6BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42675== by 0x8C62D38: PetscInitialize (pinit.c:924) +==42675== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42675== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42675== by 0x124F74: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==42675== by 0x11FB1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42675== by 0x12265E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42675== by 0x1224FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42675== by 0x122B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42675== by 0x11DF45: main (TestModifiers.cpp:19) +==42675== +==42675== Open file descriptor 113: +==42675== +==42675== +==42675== Open file descriptor 110: +==42675== +==42675== +==42675== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestModifiers_valgrind.txt +==42675== +==42675== +==42675== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42675== +==42675== +==42675== +==42675== HEAP SUMMARY: +==42675== in use at exit: 620,181 bytes in 8,242 blocks +==42675== total heap usage: 50,662 allocs, 42,420 frees, 1,339,474,964 bytes allocated +==42675== +==42675== LEAK SUMMARY: +==42675== definitely lost: 0 bytes in 0 blocks +==42675== indirectly lost: 0 bytes in 0 blocks +==42675== possibly lost: 0 bytes in 0 blocks +==42675== still reachable: 1,867 bytes in 6 blocks +==42675== suppressed: 618,314 bytes in 8,236 blocks +==42675== Reachable blocks (those to which a pointer was found) are not shown. +==42675== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42675== +==42675== For lists of detected and suppressed errors, rerun with: -s +==42675== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestMonodomainConductionVelocity_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMonodomainConductionVelocity_valgrind.txt new file mode 100644 index 000000000..029d4747d --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMonodomainConductionVelocity_valgrind.txt @@ -0,0 +1,73 @@ +==43355== Memcheck, a memory error detector +==43355== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43355== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43355== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainConductionVelocity -malloc_debug -malloc_dump -memory_info +==43355== Parent PID: 24048 +==43355== +==43355== +==43355== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43355== Open file descriptor 12: +==43355== at 0xA85207D: pipe (pipe.c:29) +==43355== by 0x1432407D: ??? +==43355== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43355== by 0xBF4D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43355== by 0xBEE6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43355== by 0xABDBD38: PetscInitialize (pinit.c:924) +==43355== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43355== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43355== by 0x126B4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43355== by 0x121E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43355== by 0x1248CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43355== by 0x12476C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43355== by 0x124E03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43355== by 0x120235: main (TestMonodomainConductionVelocity.cpp:19) +==43355== +==43355== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43355== at 0xA856A1C: __open_nocancel (open64_nocancel.c:39) +==43355== by 0xA7DABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43355== by 0xA174822: ??? +==43355== by 0xA17496F: ??? +==43355== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43355== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43355== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43355== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43355== by 0xBF4D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43355== by 0xBEE6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43355== by 0xABDBD38: PetscInitialize (pinit.c:924) +==43355== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43355== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43355== by 0x126B4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43355== by 0x121E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43355== by 0x1248CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43355== by 0x12476C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43355== by 0x124E03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43355== by 0x120235: main (TestMonodomainConductionVelocity.cpp:19) +==43355== +==43355== Open file descriptor 113: +==43355== +==43355== +==43355== Open file descriptor 110: +==43355== +==43355== +==43355== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainConductionVelocity_valgrind.txt +==43355== +==43355== +==43355== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43355== +==43355== +==43355== +==43355== HEAP SUMMARY: +==43355== in use at exit: 618,818 bytes in 8,248 blocks +==43355== total heap usage: 385,466 allocs, 377,218 frees, 1,419,222,778 bytes allocated +==43355== +==43355== LEAK SUMMARY: +==43355== definitely lost: 0 bytes in 0 blocks +==43355== indirectly lost: 0 bytes in 0 blocks +==43355== possibly lost: 0 bytes in 0 blocks +==43355== still reachable: 24 bytes in 2 blocks +==43355== suppressed: 618,794 bytes in 8,246 blocks +==43355== Reachable blocks (those to which a pointer was found) are not shown. +==43355== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43355== +==43355== For lists of detected and suppressed errors, rerun with: -s +==43355== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestMonodomainFitzHughNagumo_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMonodomainFitzHughNagumo_valgrind.txt new file mode 100644 index 000000000..c9e3219c0 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMonodomainFitzHughNagumo_valgrind.txt @@ -0,0 +1,73 @@ +==43406== Memcheck, a memory error detector +==43406== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43406== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43406== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainFitzHughNagumo -malloc_debug -malloc_dump -memory_info +==43406== Parent PID: 24048 +==43406== +==43406== +==43406== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43406== Open file descriptor 12: +==43406== at 0xA7DF07D: pipe (pipe.c:29) +==43406== by 0x1432407D: ??? +==43406== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43406== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43406== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43406== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43406== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43406== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43406== by 0x1211B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43406== by 0x11C2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43406== by 0x11E6C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43406== by 0x11E5BE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43406== by 0x11EBD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43406== by 0x11AAB5: main (TestMonodomainFitzHughNagumo.cpp:18) +==43406== +==43406== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43406== at 0xA7E3A1C: __open_nocancel (open64_nocancel.c:39) +==43406== by 0xA767BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43406== by 0xA101822: ??? +==43406== by 0xA10196F: ??? +==43406== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43406== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43406== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43406== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43406== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43406== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43406== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43406== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43406== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43406== by 0x1211B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43406== by 0x11C2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43406== by 0x11E6C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43406== by 0x11E5BE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43406== by 0x11EBD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43406== by 0x11AAB5: main (TestMonodomainFitzHughNagumo.cpp:18) +==43406== +==43406== Open file descriptor 113: +==43406== +==43406== +==43406== Open file descriptor 110: +==43406== +==43406== +==43406== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainFitzHughNagumo_valgrind.txt +==43406== +==43406== +==43406== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43406== +==43406== +==43406== +==43406== HEAP SUMMARY: +==43406== in use at exit: 618,818 bytes in 8,248 blocks +==43406== total heap usage: 80,870 allocs, 72,622 frees, 1,344,239,655 bytes allocated +==43406== +==43406== LEAK SUMMARY: +==43406== definitely lost: 0 bytes in 0 blocks +==43406== indirectly lost: 0 bytes in 0 blocks +==43406== possibly lost: 0 bytes in 0 blocks +==43406== still reachable: 24 bytes in 2 blocks +==43406== suppressed: 618,794 bytes in 8,246 blocks +==43406== Reachable blocks (those to which a pointer was found) are not shown. +==43406== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43406== +==43406== For lists of detected and suppressed errors, rerun with: -s +==43406== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 38) diff --git a/log-files/2024-09-23_05-40-48/TestMonodomainMassLumping_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMonodomainMassLumping_valgrind.txt new file mode 100644 index 000000000..97fbc52ee --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMonodomainMassLumping_valgrind.txt @@ -0,0 +1,73 @@ +==43413== Memcheck, a memory error detector +==43413== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43413== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43413== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainMassLumping -malloc_debug -malloc_dump -memory_info +==43413== Parent PID: 24048 +==43413== +==43413== +==43413== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43413== Open file descriptor 12: +==43413== at 0xA88707D: pipe (pipe.c:29) +==43413== by 0x1432407D: ??? +==43413== by 0xD5A94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43413== by 0xA175418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43413== by 0xA10ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43413== by 0xAC10D38: PetscInitialize (pinit.c:924) +==43413== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43413== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43413== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43413== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43413== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43413== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43413== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43413== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) +==43413== +==43413== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43413== at 0xA88BA1C: __open_nocancel (open64_nocancel.c:39) +==43413== by 0xA80FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43413== by 0xA072822: ??? +==43413== by 0xA07296F: ??? +==43413== by 0xD64E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43413== by 0xD64E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43413== by 0xD604922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43413== by 0xD5A92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43413== by 0xA175418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43413== by 0xA10ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43413== by 0xAC10D38: PetscInitialize (pinit.c:924) +==43413== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43413== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43413== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43413== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43413== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43413== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43413== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43413== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) +==43413== +==43413== Open file descriptor 113: +==43413== +==43413== +==43413== Open file descriptor 110: +==43413== +==43413== +==43413== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainMassLumping_valgrind.txt +==43413== +==43413== +==43413== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43413== +==43413== +==43413== +==43413== HEAP SUMMARY: +==43413== in use at exit: 618,745 bytes in 8,244 blocks +==43413== total heap usage: 406,620 allocs, 398,376 frees, 1,539,925,955 bytes allocated +==43413== +==43413== LEAK SUMMARY: +==43413== definitely lost: 0 bytes in 0 blocks +==43413== indirectly lost: 0 bytes in 0 blocks +==43413== possibly lost: 0 bytes in 0 blocks +==43413== still reachable: 24 bytes in 2 blocks +==43413== suppressed: 618,721 bytes in 8,242 blocks +==43413== Reachable blocks (those to which a pointer was found) are not shown. +==43413== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43413== +==43413== For lists of detected and suppressed errors, rerun with: -s +==43413== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 45 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestMonodomainProblem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMonodomainProblem_valgrind.txt new file mode 100644 index 000000000..2400e45aa --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMonodomainProblem_valgrind.txt @@ -0,0 +1,74 @@ +==43363== Memcheck, a memory error detector +==43363== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43363== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43363== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info +==43363== Parent PID: 24048 +==43363== +==43363== Warning: invalid file descriptor -1 in syscall close() +==43363== +==43363== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43363== Open file descriptor 12: +==43363== at 0xC10007D: pipe (pipe.c:29) +==43363== by 0x1432407D: ??? +==43363== by 0xFFEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43363== by 0xB9EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43363== by 0xB987D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43363== by 0xA2C9D38: PetscInitialize (pinit.c:924) +==43363== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43363== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43363== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43363== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43363== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43363== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43363== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43363== by 0x13FC05: main (TestMonodomainProblem.cpp:19) +==43363== +==43363== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43363== at 0xC104A1C: __open_nocancel (open64_nocancel.c:39) +==43363== by 0xC088BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43363== by 0xA174822: ??? +==43363== by 0xA17496F: ??? +==43363== by 0x100916DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43363== by 0x10091938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43363== by 0x10047922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43363== by 0xFFEA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43363== by 0xB9EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43363== by 0xB987D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43363== by 0xA2C9D38: PetscInitialize (pinit.c:924) +==43363== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43363== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43363== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43363== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43363== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43363== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43363== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43363== by 0x13FC05: main (TestMonodomainProblem.cpp:19) +==43363== +==43363== Open file descriptor 113: +==43363== +==43363== +==43363== Open file descriptor 110: +==43363== +==43363== +==43363== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt +==43363== +==43363== +==43363== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43363== +==43363== +==43363== +==43363== HEAP SUMMARY: +==43363== in use at exit: 618,745 bytes in 8,244 blocks +==43363== total heap usage: 6,613,805 allocs, 6,605,561 frees, 4,016,616,985 bytes allocated +==43363== +==43363== LEAK SUMMARY: +==43363== definitely lost: 0 bytes in 0 blocks +==43363== indirectly lost: 0 bytes in 0 blocks +==43363== possibly lost: 0 bytes in 0 blocks +==43363== still reachable: 24 bytes in 2 blocks +==43363== suppressed: 618,721 bytes in 8,242 blocks +==43363== Reachable blocks (those to which a pointer was found) are not shown. +==43363== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43363== +==43363== For lists of detected and suppressed errors, rerun with: -s +==43363== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 126 from 32) diff --git a/log-files/2024-09-23_05-40-48/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt new file mode 100644 index 000000000..66785204d --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43377== Memcheck, a memory error detector +==43377== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43377== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43377== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainPurkinjeAssemblersAndSolver -malloc_debug -malloc_dump -memory_info +==43377== Parent PID: 24048 +==43377== +==43377== +==43377== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43377== Open file descriptor 12: +==43377== at 0xC05407D: pipe (pipe.c:29) +==43377== by 0x1432407D: ??? +==43377== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43377== by 0xC3D1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43377== by 0xC36AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43377== by 0xA601D38: PetscInitialize (pinit.c:924) +==43377== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43377== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43377== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43377== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43377== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43377== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43377== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43377== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) +==43377== +==43377== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43377== at 0xC058A1C: __open_nocancel (open64_nocancel.c:39) +==43377== by 0xBFDCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43377== by 0xB891822: ??? +==43377== by 0xB89196F: ??? +==43377== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43377== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43377== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43377== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43377== by 0xC3D1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43377== by 0xC36AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43377== by 0xA601D38: PetscInitialize (pinit.c:924) +==43377== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43377== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43377== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43377== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43377== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43377== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43377== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43377== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) +==43377== +==43377== Open file descriptor 113: +==43377== +==43377== +==43377== Open file descriptor 110: +==43377== +==43377== +==43377== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt +==43377== +==43377== +==43377== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43377== +==43377== +==43377== +==43377== HEAP SUMMARY: +==43377== in use at exit: 618,818 bytes in 8,248 blocks +==43377== total heap usage: 83,438 allocs, 75,190 frees, 1,344,977,072 bytes allocated +==43377== +==43377== LEAK SUMMARY: +==43377== definitely lost: 0 bytes in 0 blocks +==43377== indirectly lost: 0 bytes in 0 blocks +==43377== possibly lost: 0 bytes in 0 blocks +==43377== still reachable: 24 bytes in 2 blocks +==43377== suppressed: 618,794 bytes in 8,246 blocks +==43377== Reachable blocks (those to which a pointer was found) are not shown. +==43377== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43377== +==43377== For lists of detected and suppressed errors, rerun with: -s +==43377== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 38) diff --git a/log-files/2024-09-23_05-40-48/TestMonodomainPurkinjeProblem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMonodomainPurkinjeProblem_valgrind.txt new file mode 100644 index 000000000..d47b5825a --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMonodomainPurkinjeProblem_valgrind.txt @@ -0,0 +1,73 @@ +==43386== Memcheck, a memory error detector +==43386== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43386== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43386== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainPurkinjeProblem -malloc_debug -malloc_dump -memory_info +==43386== Parent PID: 24048 +==43386== +==43386== +==43386== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43386== Open file descriptor 12: +==43386== at 0xA75007D: pipe (pipe.c:29) +==43386== by 0x1432407D: ??? +==43386== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43386== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43386== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43386== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43386== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43386== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43386== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43386== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43386== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43386== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43386== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43386== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) +==43386== +==43386== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43386== at 0xA754A1C: __open_nocancel (open64_nocancel.c:39) +==43386== by 0xA6D8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43386== by 0xA072822: ??? +==43386== by 0xA07296F: ??? +==43386== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43386== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43386== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43386== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43386== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43386== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43386== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43386== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43386== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43386== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43386== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43386== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43386== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43386== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43386== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) +==43386== +==43386== Open file descriptor 113: +==43386== +==43386== +==43386== Open file descriptor 110: +==43386== +==43386== +==43386== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainPurkinjeProblem_valgrind.txt +==43386== +==43386== +==43386== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43386== +==43386== +==43386== +==43386== HEAP SUMMARY: +==43386== in use at exit: 618,745 bytes in 8,244 blocks +==43386== total heap usage: 1,149,687 allocs, 1,141,443 frees, 2,579,749,722 bytes allocated +==43386== +==43386== LEAK SUMMARY: +==43386== definitely lost: 0 bytes in 0 blocks +==43386== indirectly lost: 0 bytes in 0 blocks +==43386== possibly lost: 0 bytes in 0 blocks +==43386== still reachable: 24 bytes in 2 blocks +==43386== suppressed: 618,721 bytes in 8,242 blocks +==43386== Reachable blocks (those to which a pointer was found) are not shown. +==43386== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43386== +==43386== For lists of detected and suppressed errors, rerun with: -s +==43386== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 63 from 31) diff --git a/log-files/2024-09-23_05-40-48/TestMonodomainStiffnessMatrixAssembler_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMonodomainStiffnessMatrixAssembler_valgrind.txt new file mode 100644 index 000000000..3881f4017 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMonodomainStiffnessMatrixAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==43350== Memcheck, a memory error detector +==43350== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43350== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43350== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainStiffnessMatrixAssembler -malloc_debug -malloc_dump -memory_info +==43350== Parent PID: 24048 +==43350== +==43350== +==43350== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43350== Open file descriptor 12: +==43350== at 0xBFE107D: pipe (pipe.c:29) +==43350== by 0x1432407D: ??? +==43350== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43350== by 0xC35E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43350== by 0xC2F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43350== by 0xA58CD38: PetscInitialize (pinit.c:924) +==43350== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43350== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43350== by 0x13BAD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43350== by 0x136853: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43350== by 0x1393FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43350== by 0x1392F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43350== by 0x139909: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43350== by 0x135055: main (TestMonodomainStiffnessMatrixAssembler.cpp:18) +==43350== +==43350== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43350== at 0xBFE5A1C: __open_nocancel (open64_nocancel.c:39) +==43350== by 0xBF69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43350== by 0xB81C822: ??? +==43350== by 0xB81C96F: ??? +==43350== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43350== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43350== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43350== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43350== by 0xC35E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43350== by 0xC2F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43350== by 0xA58CD38: PetscInitialize (pinit.c:924) +==43350== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43350== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43350== by 0x13BAD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43350== by 0x136853: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43350== by 0x1393FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43350== by 0x1392F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43350== by 0x139909: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43350== by 0x135055: main (TestMonodomainStiffnessMatrixAssembler.cpp:18) +==43350== +==43350== Open file descriptor 113: +==43350== +==43350== +==43350== Open file descriptor 110: +==43350== +==43350== +==43350== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainStiffnessMatrixAssembler_valgrind.txt +==43350== +==43350== +==43350== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43350== +==43350== +==43350== +==43350== HEAP SUMMARY: +==43350== in use at exit: 618,338 bytes in 8,238 blocks +==43350== total heap usage: 49,644 allocs, 41,406 frees, 1,338,640,856 bytes allocated +==43350== +==43350== LEAK SUMMARY: +==43350== definitely lost: 0 bytes in 0 blocks +==43350== indirectly lost: 0 bytes in 0 blocks +==43350== possibly lost: 0 bytes in 0 blocks +==43350== still reachable: 24 bytes in 2 blocks +==43350== suppressed: 618,314 bytes in 8,236 blocks +==43350== Reachable blocks (those to which a pointer was found) are not shown. +==43350== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43350== +==43350== For lists of detected and suppressed errors, rerun with: -s +==43350== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestMonodomainTissue_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMonodomainTissue_valgrind.txt new file mode 100644 index 000000000..95068ec0c --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMonodomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==43415== Memcheck, a memory error detector +==43415== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43415== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43415== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainTissue -malloc_debug -malloc_dump -memory_info +==43415== Parent PID: 24048 +==43415== +==43415== +==43415== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43415== Open file descriptor 12: +==43415== at 0xBB1007D: pipe (pipe.c:29) +==43415== by 0x1432407D: ??? +==43415== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43415== by 0xBE8B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43415== by 0xBE24D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43415== by 0xA1C5D38: PetscInitialize (pinit.c:924) +==43415== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43415== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43415== by 0x1294CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43415== by 0x1242BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43415== by 0x126FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43415== by 0x126E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43415== by 0x1274D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43415== by 0x1226E5: main (TestMonodomainTissue.cpp:19) +==43415== +==43415== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43415== at 0xBB14A1C: __open_nocancel (open64_nocancel.c:39) +==43415== by 0xBA98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43415== by 0xA072822: ??? +==43415== by 0xA07296F: ??? +==43415== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43415== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43415== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43415== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43415== by 0xBE8B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43415== by 0xBE24D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43415== by 0xA1C5D38: PetscInitialize (pinit.c:924) +==43415== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43415== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43415== by 0x1294CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43415== by 0x1242BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43415== by 0x126FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43415== by 0x126E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43415== by 0x1274D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43415== by 0x1226E5: main (TestMonodomainTissue.cpp:19) +==43415== +==43415== Open file descriptor 113: +==43415== +==43415== +==43415== Open file descriptor 110: +==43415== +==43415== +==43415== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainTissue_valgrind.txt +==43415== +==43415== +==43415== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43415== +==43415== +==43415== +==43415== HEAP SUMMARY: +==43415== in use at exit: 618,338 bytes in 8,238 blocks +==43415== total heap usage: 260,748 allocs, 252,510 frees, 1,394,489,052 bytes allocated +==43415== +==43415== LEAK SUMMARY: +==43415== definitely lost: 0 bytes in 0 blocks +==43415== indirectly lost: 0 bytes in 0 blocks +==43415== possibly lost: 0 bytes in 0 blocks +==43415== still reachable: 24 bytes in 2 blocks +==43415== suppressed: 618,314 bytes in 8,236 blocks +==43415== Reachable blocks (those to which a pointer was found) are not shown. +==43415== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43415== +==43415== For lists of detected and suppressed errors, rerun with: -s +==43415== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestMonodomainWithSvi_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMonodomainWithSvi_valgrind.txt new file mode 100644 index 000000000..1a1d9c41b --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMonodomainWithSvi_valgrind.txt @@ -0,0 +1,73 @@ +==43422== Memcheck, a memory error detector +==43422== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43422== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43422== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainWithSvi -malloc_debug -malloc_dump -memory_info +==43422== Parent PID: 24048 +==43422== +==43422== +==43422== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43422== Open file descriptor 12: +==43422== at 0xA7DF07D: pipe (pipe.c:29) +==43422== by 0x1432407D: ??? +==43422== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43422== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43422== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43422== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43422== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43422== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43422== by 0x123842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43422== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43422== by 0x121416: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43422== by 0x1212B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43422== by 0x12194D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43422== by 0x11D175: main (TestMonodomainWithSvi.cpp:19) +==43422== +==43422== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43422== at 0xA7E3A1C: __open_nocancel (open64_nocancel.c:39) +==43422== by 0xA767BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43422== by 0xA101822: ??? +==43422== by 0xA10196F: ??? +==43422== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43422== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43422== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43422== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43422== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43422== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43422== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43422== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43422== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43422== by 0x123842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43422== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43422== by 0x121416: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43422== by 0x1212B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43422== by 0x12194D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43422== by 0x11D175: main (TestMonodomainWithSvi.cpp:19) +==43422== +==43422== Open file descriptor 113: +==43422== +==43422== +==43422== Open file descriptor 110: +==43422== +==43422== +==43422== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainWithSvi_valgrind.txt +==43422== +==43422== +==43422== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43422== +==43422== +==43422== +==43422== HEAP SUMMARY: +==43422== in use at exit: 618,745 bytes in 8,244 blocks +==43422== total heap usage: 3,755,450 allocs, 3,747,206 frees, 1,783,480,104 bytes allocated +==43422== +==43422== LEAK SUMMARY: +==43422== definitely lost: 0 bytes in 0 blocks +==43422== indirectly lost: 0 bytes in 0 blocks +==43422== possibly lost: 0 bytes in 0 blocks +==43422== still reachable: 24 bytes in 2 blocks +==43422== suppressed: 618,721 bytes in 8,242 blocks +==43422== Reachable blocks (those to which a pointer was found) are not shown. +==43422== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43422== +==43422== For lists of detected and suppressed errors, rerun with: -s +==43422== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 75 from 31) diff --git a/log-files/2024-09-23_05-40-48/TestMonodomainWithTimeAdaptivity_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMonodomainWithTimeAdaptivity_valgrind.txt new file mode 100644 index 000000000..ff634c9b9 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMonodomainWithTimeAdaptivity_valgrind.txt @@ -0,0 +1,73 @@ +==43436== Memcheck, a memory error detector +==43436== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43436== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43436== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainWithTimeAdaptivity -malloc_debug -malloc_dump -memory_info +==43436== Parent PID: 24048 +==43436== +==43436== +==43436== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43436== Open file descriptor 12: +==43436== at 0xBC0507D: pipe (pipe.c:29) +==43436== by 0x1432407D: ??? +==43436== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43436== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43436== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43436== by 0xA160D38: PetscInitialize (pinit.c:924) +==43436== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43436== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43436== by 0x127824: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43436== by 0x121AED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43436== by 0x124B6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43436== by 0x124A0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43436== by 0x1250A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43436== by 0x11FF15: main (TestMonodomainWithTimeAdaptivity.cpp:19) +==43436== +==43436== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43436== at 0xBC09A1C: __open_nocancel (open64_nocancel.c:39) +==43436== by 0xBB8DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43436== by 0xB3F0822: ??? +==43436== by 0xB3F096F: ??? +==43436== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43436== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43436== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43436== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43436== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43436== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43436== by 0xA160D38: PetscInitialize (pinit.c:924) +==43436== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43436== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43436== by 0x127824: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43436== by 0x121AED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43436== by 0x124B6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43436== by 0x124A0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43436== by 0x1250A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43436== by 0x11FF15: main (TestMonodomainWithTimeAdaptivity.cpp:19) +==43436== +==43436== Open file descriptor 113: +==43436== +==43436== +==43436== Open file descriptor 110: +==43436== +==43436== +==43436== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainWithTimeAdaptivity_valgrind.txt +==43436== +==43436== +==43436== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43436== +==43436== +==43436== +==43436== HEAP SUMMARY: +==43436== in use at exit: 618,745 bytes in 8,244 blocks +==43436== total heap usage: 1,145,050 allocs, 1,136,806 frees, 1,400,681,305 bytes allocated +==43436== +==43436== LEAK SUMMARY: +==43436== definitely lost: 0 bytes in 0 blocks +==43436== indirectly lost: 0 bytes in 0 blocks +==43436== possibly lost: 0 bytes in 0 blocks +==43436== still reachable: 24 bytes in 2 blocks +==43436== suppressed: 618,721 bytes in 8,242 blocks +==43436== Reachable blocks (those to which a pointer was found) are not shown. +==43436== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43436== +==43436== For lists of detected and suppressed errors, rerun with: -s +==43436== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 42 from 31) diff --git a/log-files/2024-09-23_05-40-48/TestMoreMechanics_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMoreMechanics_valgrind.txt new file mode 100644 index 000000000..3cb1ada64 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMoreMechanics_valgrind.txt @@ -0,0 +1,73 @@ +==25366== Memcheck, a memory error detector +==25366== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25366== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25366== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMoreMechanics -malloc_debug -malloc_dump -memory_info +==25366== Parent PID: 24048 +==25366== +==25366== +==25366== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25366== Open file descriptor 12: +==25366== at 0x866707D: pipe (pipe.c:29) +==25366== by 0x106D807D: ??? +==25366== by 0xC4EC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25366== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25366== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25366== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25366== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25366== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25366== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25366== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25366== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25366== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25366== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25366== by 0x135775: main (TestMoreMechanics.cpp:19) +==25366== +==25366== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25366== at 0x866BA1C: __open_nocancel (open64_nocancel.c:39) +==25366== by 0x85EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25366== by 0x7EBC822: ??? +==25366== by 0x7EBC96F: ??? +==25366== by 0xC5916DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25366== by 0xC591938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25366== by 0xC547922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25366== by 0xC4EC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25366== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25366== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25366== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25366== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25366== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25366== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25366== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25366== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25366== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25366== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25366== by 0x135775: main (TestMoreMechanics.cpp:19) +==25366== +==25366== Open file descriptor 113: +==25366== +==25366== +==25366== Open file descriptor 110: +==25366== +==25366== +==25366== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMoreMechanics_valgrind.txt +==25366== +==25366== +==25366== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25366== +==25366== +==25366== +==25366== HEAP SUMMARY: +==25366== in use at exit: 618,201 bytes in 8,234 blocks +==25366== total heap usage: 376,390 allocs, 368,156 frees, 1,439,963,652 bytes allocated +==25366== +==25366== LEAK SUMMARY: +==25366== definitely lost: 0 bytes in 0 blocks +==25366== indirectly lost: 0 bytes in 0 blocks +==25366== possibly lost: 0 bytes in 0 blocks +==25366== still reachable: 24 bytes in 2 blocks +==25366== suppressed: 618,177 bytes in 8,232 blocks +==25366== Reachable blocks (those to which a pointer was found) are not shown. +==25366== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25366== +==25366== For lists of detected and suppressed errors, rerun with: -s +==25366== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-23_05-40-48/TestMultiLobeAirwayGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMultiLobeAirwayGenerator_valgrind.txt new file mode 100644 index 000000000..d6d3d85ad --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMultiLobeAirwayGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==41186== Memcheck, a memory error detector +==41186== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41186== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41186== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMultiLobeAirwayGenerator -malloc_debug -malloc_dump -memory_info +==41186== Parent PID: 24048 +==41186== +==41186== +==41186== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41186== Open file descriptor 12: +==41186== at 0x8D2D07D: pipe (pipe.c:29) +==41186== by 0x107A507D: ??? +==41186== by 0xC0944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41186== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41186== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41186== by 0x679ED38: PetscInitialize (pinit.c:924) +==41186== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41186== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41186== by 0x11A3B7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41186== by 0x11592D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41186== by 0x118434: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41186== by 0x1182D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41186== by 0x11896B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41186== by 0x113D55: main (TestMultiLobeAirwayGenerator.cpp:19) +==41186== +==41186== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41186== at 0x8D31A1C: __open_nocancel (open64_nocancel.c:39) +==41186== by 0x8CB5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41186== by 0x7A2E822: ??? +==41186== by 0x7A2E96F: ??? +==41186== by 0xC1396DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41186== by 0xC139938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41186== by 0xC0EF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41186== by 0xC0942DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41186== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41186== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41186== by 0x679ED38: PetscInitialize (pinit.c:924) +==41186== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41186== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41186== by 0x11A3B7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41186== by 0x11592D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41186== by 0x118434: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41186== by 0x1182D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41186== by 0x11896B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41186== by 0x113D55: main (TestMultiLobeAirwayGenerator.cpp:19) +==41186== +==41186== Open file descriptor 113: +==41186== +==41186== +==41186== Open file descriptor 110: +==41186== +==41186== +==41186== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMultiLobeAirwayGenerator_valgrind.txt +==41186== +==41186== +==41186== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41186== +==41186== +==41186== +==41186== HEAP SUMMARY: +==41186== in use at exit: 618,322 bytes in 8,238 blocks +==41186== total heap usage: 175,715 allocs, 167,477 frees, 1,419,543,954 bytes allocated +==41186== +==41186== LEAK SUMMARY: +==41186== definitely lost: 0 bytes in 0 blocks +==41186== indirectly lost: 0 bytes in 0 blocks +==41186== possibly lost: 0 bytes in 0 blocks +==41186== still reachable: 24 bytes in 2 blocks +==41186== suppressed: 618,298 bytes in 8,236 blocks +==41186== Reachable blocks (those to which a pointer was found) are not shown. +==41186== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41186== +==41186== For lists of detected and suppressed errors, rerun with: -s +==41186== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestMutableMeshRemesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMutableMeshRemesh_valgrind.txt new file mode 100644 index 000000000..f2bf82243 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMutableMeshRemesh_valgrind.txt @@ -0,0 +1,73 @@ +==24477== Memcheck, a memory error detector +==24477== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24477== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24477== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableMeshRemesh -malloc_debug -malloc_dump -memory_info +==24477== Parent PID: 24048 +==24477== +==24477== +==24477== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24477== Open file descriptor 12: +==24477== at 0x6C5407D: pipe (pipe.c:29) +==24477== by 0x100C507D: ??? +==24477== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24477== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24477== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24477== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24477== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24477== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24477== by 0x1241D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24477== by 0x11F1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24477== by 0x121F40: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24477== by 0x121DE0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24477== by 0x122477: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24477== by 0x11D615: main (TestMutableMeshRemesh.cpp:19) +==24477== +==24477== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24477== at 0x6C58A1C: __open_nocancel (open64_nocancel.c:39) +==24477== by 0x6BDCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24477== by 0x6590822: ??? +==24477== by 0x659096F: ??? +==24477== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24477== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24477== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24477== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24477== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24477== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24477== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24477== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24477== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24477== by 0x1241D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24477== by 0x11F1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24477== by 0x121F40: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24477== by 0x121DE0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24477== by 0x122477: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24477== by 0x11D615: main (TestMutableMeshRemesh.cpp:19) +==24477== +==24477== Open file descriptor 113: +==24477== +==24477== +==24477== Open file descriptor 110: +==24477== +==24477== +==24477== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableMeshRemesh_valgrind.txt +==24477== +==24477== +==24477== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24477== +==24477== +==24477== +==24477== HEAP SUMMARY: +==24477== in use at exit: 618,226 bytes in 8,238 blocks +==24477== total heap usage: 264,076 allocs, 255,838 frees, 1,353,001,456 bytes allocated +==24477== +==24477== LEAK SUMMARY: +==24477== definitely lost: 0 bytes in 0 blocks +==24477== indirectly lost: 0 bytes in 0 blocks +==24477== possibly lost: 0 bytes in 0 blocks +==24477== still reachable: 24 bytes in 2 blocks +==24477== suppressed: 618,202 bytes in 8,236 blocks +==24477== Reachable blocks (those to which a pointer was found) are not shown. +==24477== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24477== +==24477== For lists of detected and suppressed errors, rerun with: -s +==24477== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestMutableMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMutableMesh_valgrind.txt new file mode 100644 index 000000000..3a0f34e79 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMutableMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24475== Memcheck, a memory error detector +==24475== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24475== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24475== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableMesh -malloc_debug -malloc_dump -memory_info +==24475== Parent PID: 24048 +==24475== +==24475== +==24475== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24475== Open file descriptor 12: +==24475== at 0x6C9607D: pipe (pipe.c:29) +==24475== by 0x100C507D: ??? +==24475== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24475== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24475== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24475== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24475== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24475== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24475== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24475== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24475== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24475== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24475== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24475== by 0x12C225: main (TestMutableMesh.cpp:19) +==24475== +==24475== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24475== at 0x6C9AA1C: __open_nocancel (open64_nocancel.c:39) +==24475== by 0x6C1EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24475== by 0x6590822: ??? +==24475== by 0x659096F: ??? +==24475== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24475== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24475== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24475== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24475== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24475== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24475== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24475== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24475== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24475== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24475== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24475== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24475== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24475== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24475== by 0x12C225: main (TestMutableMesh.cpp:19) +==24475== +==24475== Open file descriptor 113: +==24475== +==24475== +==24475== Open file descriptor 110: +==24475== +==24475== +==24475== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableMesh_valgrind.txt +==24475== +==24475== +==24475== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24475== +==24475== +==24475== +==24475== HEAP SUMMARY: +==24475== in use at exit: 618,226 bytes in 8,238 blocks +==24475== total heap usage: 705,950 allocs, 697,712 frees, 1,368,455,776 bytes allocated +==24475== +==24475== LEAK SUMMARY: +==24475== definitely lost: 0 bytes in 0 blocks +==24475== indirectly lost: 0 bytes in 0 blocks +==24475== possibly lost: 0 bytes in 0 blocks +==24475== still reachable: 24 bytes in 2 blocks +==24475== suppressed: 618,202 bytes in 8,236 blocks +==24475== Reachable blocks (those to which a pointer was found) are not shown. +==24475== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24475== +==24475== For lists of detected and suppressed errors, rerun with: -s +==24475== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-09-23_05-40-48/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt new file mode 100644 index 000000000..95dc8af8c --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt @@ -0,0 +1,73 @@ +==26144== Memcheck, a memory error detector +==26144== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26144== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26144== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMutableVertexMeshOperationsWithPopulationSrn -malloc_debug -malloc_dump -memory_info +==26144== Parent PID: 24048 +==26144== +==26144== +==26144== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26144== Open file descriptor 12: +==26144== at 0x10CB007D: pipe (pipe.c:29) +==26144== by 0x196AD07D: ??? +==26144== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26144== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26144== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26144== by 0xF225D38: PetscInitialize (pinit.c:924) +==26144== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26144== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26144== by 0x12FA43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26144== by 0x12AAD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26144== by 0x12D2E4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26144== by 0x12D1E0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26144== by 0x12D7F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26144== by 0x1292D5: main (TestMutableVertexMeshOperationsWithPopulationSrn.cpp:18) +==26144== +==26144== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26144== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==26144== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26144== by 0x104B5822: ??? +==26144== by 0x104B596F: ??? +==26144== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26144== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26144== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26144== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26144== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26144== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26144== by 0xF225D38: PetscInitialize (pinit.c:924) +==26144== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26144== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26144== by 0x12FA43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26144== by 0x12AAD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26144== by 0x12D2E4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26144== by 0x12D1E0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26144== by 0x12D7F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26144== by 0x1292D5: main (TestMutableVertexMeshOperationsWithPopulationSrn.cpp:18) +==26144== +==26144== Open file descriptor 113: +==26144== +==26144== +==26144== Open file descriptor 110: +==26144== +==26144== +==26144== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt +==26144== +==26144== +==26144== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26144== +==26144== +==26144== +==26144== HEAP SUMMARY: +==26144== in use at exit: 618,354 bytes in 8,239 blocks +==26144== total heap usage: 60,808 allocs, 52,569 frees, 1,339,311,803 bytes allocated +==26144== +==26144== LEAK SUMMARY: +==26144== definitely lost: 0 bytes in 0 blocks +==26144== indirectly lost: 0 bytes in 0 blocks +==26144== possibly lost: 0 bytes in 0 blocks +==26144== still reachable: 56 bytes in 3 blocks +==26144== suppressed: 618,298 bytes in 8,236 blocks +==26144== Reachable blocks (those to which a pointer was found) are not shown. +==26144== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26144== +==26144== For lists of detected and suppressed errors, rerun with: -s +==26144== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestMutableVertexMeshReMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMutableVertexMeshReMesh_valgrind.txt new file mode 100644 index 000000000..acf4b1176 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMutableVertexMeshReMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24754== Memcheck, a memory error detector +==24754== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24754== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24754== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMeshReMesh -malloc_debug -malloc_dump -memory_info +==24754== Parent PID: 24048 +==24754== +==24754== +==24754== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24754== Open file descriptor 12: +==24754== at 0x814B07D: pipe (pipe.c:29) +==24754== by 0x100C507D: ??? +==24754== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24754== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24754== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24754== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24754== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24754== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24754== by 0x1B0C07: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24754== by 0x1A87FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24754== by 0x1AC684: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24754== by 0x1AC524: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24754== by 0x1ACBBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24754== by 0x1A6C25: main (TestMutableVertexMeshReMesh.cpp:19) +==24754== +==24754== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24754== at 0x814FA1C: __open_nocancel (open64_nocancel.c:39) +==24754== by 0x80D3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24754== by 0x6590822: ??? +==24754== by 0x659096F: ??? +==24754== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24754== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24754== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24754== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24754== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24754== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24754== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24754== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24754== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24754== by 0x1B0C07: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24754== by 0x1A87FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24754== by 0x1AC684: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24754== by 0x1AC524: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24754== by 0x1ACBBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24754== by 0x1A6C25: main (TestMutableVertexMeshReMesh.cpp:19) +==24754== +==24754== Open file descriptor 113: +==24754== +==24754== +==24754== Open file descriptor 110: +==24754== +==24754== +==24754== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshReMesh_valgrind.txt +==24754== +==24754== +==24754== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24754== +==24754== +==24754== +==24754== HEAP SUMMARY: +==24754== in use at exit: 620,778 bytes in 8,239 blocks +==24754== total heap usage: 81,706 allocs, 73,467 frees, 1,340,047,929 bytes allocated +==24754== +==24754== LEAK SUMMARY: +==24754== definitely lost: 0 bytes in 0 blocks +==24754== indirectly lost: 0 bytes in 0 blocks +==24754== possibly lost: 0 bytes in 0 blocks +==24754== still reachable: 2,576 bytes in 3 blocks +==24754== suppressed: 618,202 bytes in 8,236 blocks +==24754== Reachable blocks (those to which a pointer was found) are not shown. +==24754== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24754== +==24754== For lists of detected and suppressed errors, rerun with: -s +==24754== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestMutableVertexMeshRosetteMethods_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMutableVertexMeshRosetteMethods_valgrind.txt new file mode 100644 index 000000000..ef63c6e16 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMutableVertexMeshRosetteMethods_valgrind.txt @@ -0,0 +1,73 @@ +==24756== Memcheck, a memory error detector +==24756== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24756== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24756== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMeshRosetteMethods -malloc_debug -malloc_dump -memory_info +==24756== Parent PID: 24048 +==24756== +==24756== +==24756== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24756== Open file descriptor 12: +==24756== at 0x823407D: pipe (pipe.c:29) +==24756== by 0x100C507D: ??? +==24756== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24756== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24756== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24756== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24756== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24756== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24756== by 0x122CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24756== by 0x11DCDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24756== by 0x120960: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24756== by 0x120800: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24756== by 0x120E97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24756== by 0x11C105: main (TestMutableVertexMeshRosetteMethods.cpp:19) +==24756== +==24756== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24756== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24756== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24756== by 0x6590822: ??? +==24756== by 0x659096F: ??? +==24756== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24756== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24756== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24756== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24756== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24756== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24756== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24756== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24756== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24756== by 0x122CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24756== by 0x11DCDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24756== by 0x120960: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24756== by 0x120800: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24756== by 0x120E97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24756== by 0x11C105: main (TestMutableVertexMeshRosetteMethods.cpp:19) +==24756== +==24756== Open file descriptor 113: +==24756== +==24756== +==24756== Open file descriptor 110: +==24756== +==24756== +==24756== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshRosetteMethods_valgrind.txt +==24756== +==24756== +==24756== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24756== +==24756== +==24756== +==24756== HEAP SUMMARY: +==24756== in use at exit: 620,778 bytes in 8,239 blocks +==24756== total heap usage: 53,313 allocs, 45,074 frees, 1,338,842,848 bytes allocated +==24756== +==24756== LEAK SUMMARY: +==24756== definitely lost: 0 bytes in 0 blocks +==24756== indirectly lost: 0 bytes in 0 blocks +==24756== possibly lost: 0 bytes in 0 blocks +==24756== still reachable: 2,576 bytes in 3 blocks +==24756== suppressed: 618,202 bytes in 8,236 blocks +==24756== Reachable blocks (those to which a pointer was found) are not shown. +==24756== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24756== +==24756== For lists of detected and suppressed errors, rerun with: -s +==24756== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestMutableVertexMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestMutableVertexMesh_valgrind.txt new file mode 100644 index 000000000..ec533a5b6 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestMutableVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24740== Memcheck, a memory error detector +==24740== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24740== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24740== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMesh -malloc_debug -malloc_dump -memory_info +==24740== Parent PID: 24048 +==24740== +==24740== +==24740== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24740== Open file descriptor 12: +==24740== at 0x814B07D: pipe (pipe.c:29) +==24740== by 0x100C507D: ??? +==24740== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24740== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24740== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24740== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24740== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24740== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24740== by 0x1B5143: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24740== by 0x1AE9BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24740== by 0x1B27F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24740== by 0x1B2696: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24740== by 0x1B2D2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24740== by 0x1ACDE5: main (TestMutableVertexMesh.cpp:19) +==24740== +==24740== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24740== at 0x814FA1C: __open_nocancel (open64_nocancel.c:39) +==24740== by 0x80D3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24740== by 0x6590822: ??? +==24740== by 0x659096F: ??? +==24740== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24740== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24740== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24740== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24740== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24740== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24740== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24740== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24740== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24740== by 0x1B5143: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24740== by 0x1AE9BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24740== by 0x1B27F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24740== by 0x1B2696: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24740== by 0x1B2D2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24740== by 0x1ACDE5: main (TestMutableVertexMesh.cpp:19) +==24740== +==24740== Open file descriptor 113: +==24740== +==24740== +==24740== Open file descriptor 110: +==24740== +==24740== +==24740== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMesh_valgrind.txt +==24740== +==24740== +==24740== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24740== +==24740== +==24740== +==24740== HEAP SUMMARY: +==24740== in use at exit: 620,778 bytes in 8,239 blocks +==24740== total heap usage: 58,720 allocs, 50,481 frees, 1,339,662,926 bytes allocated +==24740== +==24740== LEAK SUMMARY: +==24740== definitely lost: 0 bytes in 0 blocks +==24740== indirectly lost: 0 bytes in 0 blocks +==24740== possibly lost: 0 bytes in 0 blocks +==24740== still reachable: 2,576 bytes in 3 blocks +==24740== suppressed: 618,202 bytes in 8,236 blocks +==24740== Reachable blocks (those to which a pointer was found) are not shown. +==24740== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24740== +==24740== For lists of detected and suppressed errors, rerun with: -s +==24740== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestNeumannStimulus_valgrind.txt b/log-files/2024-09-23_05-40-48/TestNeumannStimulus_valgrind.txt new file mode 100644 index 000000000..b5b922bee --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestNeumannStimulus_valgrind.txt @@ -0,0 +1,73 @@ +==43617== Memcheck, a memory error detector +==43617== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43617== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43617== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestNeumannStimulus -malloc_debug -malloc_dump -memory_info +==43617== Parent PID: 24048 +==43617== +==43617== +==43617== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43617== Open file descriptor 12: +==43617== at 0xAB7C07D: pipe (pipe.c:29) +==43617== by 0x1432407D: ??? +==43617== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43617== by 0xC277418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43617== by 0xC210D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43617== by 0xAF05D38: PetscInitialize (pinit.c:924) +==43617== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43617== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43617== by 0x12243C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43617== by 0x11D413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43617== by 0x11F854: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43617== by 0x11F750: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43617== by 0x11FD63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43617== by 0x11BC15: main (TestNeumannStimulus.cpp:18) +==43617== +==43617== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43617== at 0xAB80A1C: __open_nocancel (open64_nocancel.c:39) +==43617== by 0xAB04BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43617== by 0xA49E822: ??? +==43617== by 0xA49E96F: ??? +==43617== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43617== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43617== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43617== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43617== by 0xC277418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43617== by 0xC210D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43617== by 0xAF05D38: PetscInitialize (pinit.c:924) +==43617== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43617== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43617== by 0x12243C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43617== by 0x11D413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43617== by 0x11F854: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43617== by 0x11F750: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43617== by 0x11FD63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43617== by 0x11BC15: main (TestNeumannStimulus.cpp:18) +==43617== +==43617== Open file descriptor 113: +==43617== +==43617== +==43617== Open file descriptor 110: +==43617== +==43617== +==43617== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNeumannStimulus_valgrind.txt +==43617== +==43617== +==43617== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43617== +==43617== +==43617== +==43617== HEAP SUMMARY: +==43617== in use at exit: 618,818 bytes in 8,248 blocks +==43617== total heap usage: 100,654 allocs, 92,406 frees, 1,350,844,250 bytes allocated +==43617== +==43617== LEAK SUMMARY: +==43617== definitely lost: 0 bytes in 0 blocks +==43617== indirectly lost: 0 bytes in 0 blocks +==43617== possibly lost: 0 bytes in 0 blocks +==43617== still reachable: 24 bytes in 2 blocks +==43617== suppressed: 618,794 bytes in 8,246 blocks +==43617== Reachable blocks (those to which a pointer was found) are not shown. +==43617== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43617== +==43617== For lists of detected and suppressed errors, rerun with: -s +==43617== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2024-09-23_05-40-48/TestNhsModelWithBackwardSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestNhsModelWithBackwardSolver_valgrind.txt new file mode 100644 index 000000000..dd3b4b744 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestNhsModelWithBackwardSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43343== Memcheck, a memory error detector +==43343== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43343== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43343== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestNhsModelWithBackwardSolver -malloc_debug -malloc_dump -memory_info +==43343== Parent PID: 24048 +==43343== +==43343== +==43343== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43343== Open file descriptor 12: +==43343== at 0x87AE07D: pipe (pipe.c:29) +==43343== by 0x1432407D: ??? +==43343== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43343== by 0x9EA9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43343== by 0x9E42D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43343== by 0x8B39D38: PetscInitialize (pinit.c:924) +==43343== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43343== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43343== by 0x118B18: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43343== by 0x114093: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43343== by 0x11647E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43343== by 0x116379: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43343== by 0x11698D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43343== by 0x112895: main (TestNhsModelWithBackwardSolver.cpp:18) +==43343== +==43343== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43343== at 0x87B2A1C: __open_nocancel (open64_nocancel.c:39) +==43343== by 0x8736BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43343== by 0x8417822: ??? +==43343== by 0x841796F: ??? +==43343== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43343== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43343== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43343== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43343== by 0x9EA9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43343== by 0x9E42D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43343== by 0x8B39D38: PetscInitialize (pinit.c:924) +==43343== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43343== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43343== by 0x118B18: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43343== by 0x114093: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43343== by 0x11647E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43343== by 0x116379: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43343== by 0x11698D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43343== by 0x112895: main (TestNhsModelWithBackwardSolver.cpp:18) +==43343== +==43343== Open file descriptor 113: +==43343== +==43343== +==43343== Open file descriptor 110: +==43343== +==43343== +==43343== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNhsModelWithBackwardSolver_valgrind.txt +==43343== +==43343== +==43343== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43343== +==43343== +==43343== +==43343== HEAP SUMMARY: +==43343== in use at exit: 618,338 bytes in 8,238 blocks +==43343== total heap usage: 49,064 allocs, 40,826 frees, 1,338,540,065 bytes allocated +==43343== +==43343== LEAK SUMMARY: +==43343== definitely lost: 0 bytes in 0 blocks +==43343== indirectly lost: 0 bytes in 0 blocks +==43343== possibly lost: 0 bytes in 0 blocks +==43343== still reachable: 24 bytes in 2 blocks +==43343== suppressed: 618,314 bytes in 8,236 blocks +==43343== Reachable blocks (those to which a pointer was found) are not shown. +==43343== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43343== +==43343== For lists of detected and suppressed errors, rerun with: -s +==43343== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestNodeAttributes_valgrind.txt b/log-files/2024-09-23_05-40-48/TestNodeAttributes_valgrind.txt new file mode 100644 index 000000000..f443015a3 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestNodeAttributes_valgrind.txt @@ -0,0 +1,73 @@ +==24500== Memcheck, a memory error detector +==24500== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24500== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24500== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNodeAttributes -malloc_debug -malloc_dump -memory_info +==24500== Parent PID: 24048 +==24500== +==24500== +==24500== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24500== Open file descriptor 12: +==24500== at 0x695107D: pipe (pipe.c:29) +==24500== by 0x100C307D: ??? +==24500== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24500== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24500== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24500== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24500== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24500== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24500== by 0x1396D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24500== by 0x134029: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24500== by 0x136E5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24500== by 0x136CFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24500== by 0x137391: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24500== by 0x132445: main (TestNodeAttributes.cpp:19) +==24500== +==24500== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24500== at 0x6955A1C: __open_nocancel (open64_nocancel.c:39) +==24500== by 0x68D9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24500== by 0x6590822: ??? +==24500== by 0x659096F: ??? +==24500== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24500== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24500== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24500== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24500== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24500== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24500== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24500== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24500== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24500== by 0x1396D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24500== by 0x134029: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24500== by 0x136E5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24500== by 0x136CFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24500== by 0x137391: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24500== by 0x132445: main (TestNodeAttributes.cpp:19) +==24500== +==24500== Open file descriptor 113: +==24500== +==24500== +==24500== Open file descriptor 110: +==24500== +==24500== +==24500== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeAttributes_valgrind.txt +==24500== +==24500== +==24500== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24500== +==24500== +==24500== +==24500== HEAP SUMMARY: +==24500== in use at exit: 618,226 bytes in 8,238 blocks +==24500== total heap usage: 47,486 allocs, 39,248 frees, 1,338,443,168 bytes allocated +==24500== +==24500== LEAK SUMMARY: +==24500== definitely lost: 0 bytes in 0 blocks +==24500== indirectly lost: 0 bytes in 0 blocks +==24500== possibly lost: 0 bytes in 0 blocks +==24500== still reachable: 24 bytes in 2 blocks +==24500== suppressed: 618,202 bytes in 8,236 blocks +==24500== Reachable blocks (those to which a pointer was found) are not shown. +==24500== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24500== +==24500== For lists of detected and suppressed errors, rerun with: -s +==24500== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestNodeBasedCellPopulationParallelMethods_valgrind.txt b/log-files/2024-09-23_05-40-48/TestNodeBasedCellPopulationParallelMethods_valgrind.txt new file mode 100644 index 000000000..f61b8aaf4 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestNodeBasedCellPopulationParallelMethods_valgrind.txt @@ -0,0 +1,73 @@ +==26173== Memcheck, a memory error detector +==26173== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26173== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26173== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationParallelMethods -malloc_debug -malloc_dump -memory_info +==26173== Parent PID: 24048 +==26173== +==26173== +==26173== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26173== Open file descriptor 12: +==26173== at 0xF8E007D: pipe (pipe.c:29) +==26173== by 0x196AD07D: ??? +==26173== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26173== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26173== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26173== by 0x10210D38: PetscInitialize (pinit.c:924) +==26173== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26173== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26173== by 0x13F4FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26173== by 0x13824D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26173== by 0x13AF0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26173== by 0x13ADAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26173== by 0x13B441: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26173== by 0x136675: main (TestNodeBasedCellPopulationParallelMethods.cpp:19) +==26173== +==26173== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26173== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==26173== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26173== by 0xF137822: ??? +==26173== by 0xF13796F: ??? +==26173== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26173== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26173== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26173== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26173== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26173== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26173== by 0x10210D38: PetscInitialize (pinit.c:924) +==26173== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26173== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26173== by 0x13F4FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26173== by 0x13824D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26173== by 0x13AF0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26173== by 0x13ADAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26173== by 0x13B441: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26173== by 0x136675: main (TestNodeBasedCellPopulationParallelMethods.cpp:19) +==26173== +==26173== Open file descriptor 113: +==26173== +==26173== +==26173== Open file descriptor 110: +==26173== +==26173== +==26173== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationParallelMethods_valgrind.txt +==26173== +==26173== +==26173== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26173== +==26173== +==26173== +==26173== HEAP SUMMARY: +==26173== in use at exit: 618,354 bytes in 8,239 blocks +==26173== total heap usage: 60,256 allocs, 52,017 frees, 1,342,417,197 bytes allocated +==26173== +==26173== LEAK SUMMARY: +==26173== definitely lost: 0 bytes in 0 blocks +==26173== indirectly lost: 0 bytes in 0 blocks +==26173== possibly lost: 0 bytes in 0 blocks +==26173== still reachable: 56 bytes in 3 blocks +==26173== suppressed: 618,298 bytes in 8,236 blocks +==26173== Reachable blocks (those to which a pointer was found) are not shown. +==26173== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26173== +==26173== For lists of detected and suppressed errors, rerun with: -s +==26173== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt b/log-files/2024-09-23_05-40-48/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt new file mode 100644 index 000000000..c1be43718 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt @@ -0,0 +1,73 @@ +==26175== Memcheck, a memory error detector +==26175== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26175== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26175== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithBuskeUpdate -malloc_debug -malloc_dump -memory_info +==26175== Parent PID: 24048 +==26175== +==26175== +==26175== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26175== Open file descriptor 12: +==26175== at 0xF83B07D: pipe (pipe.c:29) +==26175== by 0x196AD07D: ??? +==26175== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26175== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26175== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26175== by 0x10127D38: PetscInitialize (pinit.c:924) +==26175== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26175== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26175== by 0x2CC5B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26175== by 0x2C3A9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26175== by 0x2C7EB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26175== by 0x2C7DB3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26175== by 0x2C83C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26175== by 0x2C2295: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) +==26175== +==26175== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26175== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==26175== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26175== by 0xF137822: ??? +==26175== by 0xF13796F: ??? +==26175== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26175== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26175== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26175== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26175== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26175== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26175== by 0x10127D38: PetscInitialize (pinit.c:924) +==26175== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26175== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26175== by 0x2CC5B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26175== by 0x2C3A9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26175== by 0x2C7EB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26175== by 0x2C7DB3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26175== by 0x2C83C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26175== by 0x2C2295: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) +==26175== +==26175== Open file descriptor 113: +==26175== +==26175== +==26175== Open file descriptor 110: +==26175== +==26175== +==26175== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt +==26175== +==26175== +==26175== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26175== +==26175== +==26175== +==26175== HEAP SUMMARY: +==26175== in use at exit: 618,354 bytes in 8,239 blocks +==26175== total heap usage: 56,999 allocs, 48,760 frees, 1,340,209,361 bytes allocated +==26175== +==26175== LEAK SUMMARY: +==26175== definitely lost: 0 bytes in 0 blocks +==26175== indirectly lost: 0 bytes in 0 blocks +==26175== possibly lost: 0 bytes in 0 blocks +==26175== still reachable: 56 bytes in 3 blocks +==26175== suppressed: 618,298 bytes in 8,236 blocks +==26175== Reachable blocks (those to which a pointer was found) are not shown. +==26175== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26175== +==26175== For lists of detected and suppressed errors, rerun with: -s +==26175== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestNodeBasedCellPopulationWithParticles_valgrind.txt b/log-files/2024-09-23_05-40-48/TestNodeBasedCellPopulationWithParticles_valgrind.txt new file mode 100644 index 000000000..0ddb6337a --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestNodeBasedCellPopulationWithParticles_valgrind.txt @@ -0,0 +1,73 @@ +==26176== Memcheck, a memory error detector +==26176== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26176== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26176== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithParticles -malloc_debug -malloc_dump -memory_info +==26176== Parent PID: 24048 +==26176== +==26176== +==26176== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26176== Open file descriptor 12: +==26176== at 0xF92407D: pipe (pipe.c:29) +==26176== by 0x196AD07D: ??? +==26176== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26176== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26176== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26176== by 0x10210D38: PetscInitialize (pinit.c:924) +==26176== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26176== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26176== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26176== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26176== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26176== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26176== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26176== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) +==26176== +==26176== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26176== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==26176== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26176== by 0xF137822: ??? +==26176== by 0xF13796F: ??? +==26176== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26176== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26176== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26176== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26176== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26176== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26176== by 0x10210D38: PetscInitialize (pinit.c:924) +==26176== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26176== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26176== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26176== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26176== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26176== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26176== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26176== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) +==26176== +==26176== Open file descriptor 113: +==26176== +==26176== +==26176== Open file descriptor 110: +==26176== +==26176== +==26176== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithParticles_valgrind.txt +==26176== +==26176== +==26176== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26176== +==26176== +==26176== +==26176== HEAP SUMMARY: +==26176== in use at exit: 618,354 bytes in 8,239 blocks +==26176== total heap usage: 103,599 allocs, 95,360 frees, 1,346,202,383 bytes allocated +==26176== +==26176== LEAK SUMMARY: +==26176== definitely lost: 0 bytes in 0 blocks +==26176== indirectly lost: 0 bytes in 0 blocks +==26176== possibly lost: 0 bytes in 0 blocks +==26176== still reachable: 56 bytes in 3 blocks +==26176== suppressed: 618,298 bytes in 8,236 blocks +==26176== Reachable blocks (those to which a pointer was found) are not shown. +==26176== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26176== +==26176== For lists of detected and suppressed errors, rerun with: -s +==26176== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestNodeBasedCellPopulation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestNodeBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..cdb5341c3 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestNodeBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26158== Memcheck, a memory error detector +==26158== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26158== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26158== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26158== Parent PID: 24048 +==26158== +==26158== +==26158== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26158== Open file descriptor 12: +==26158== at 0xF8CC07D: pipe (pipe.c:29) +==26158== by 0x196AD07D: ??? +==26158== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26158== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26158== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26158== by 0x10127D38: PetscInitialize (pinit.c:924) +==26158== by 0xF18B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26158== by 0xF18B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26158== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26158== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26158== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26158== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26158== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26158== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) +==26158== +==26158== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26158== at 0xF8D0A1C: __open_nocancel (open64_nocancel.c:39) +==26158== by 0xF854BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26158== by 0xF1C6822: ??? +==26158== by 0xF1C696F: ??? +==26158== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26158== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26158== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26158== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26158== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26158== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26158== by 0x10127D38: PetscInitialize (pinit.c:924) +==26158== by 0xF18B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26158== by 0xF18B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26158== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26158== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26158== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26158== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26158== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26158== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) +==26158== +==26158== Open file descriptor 113: +==26158== +==26158== +==26158== Open file descriptor 110: +==26158== +==26158== +==26158== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt +==26158== +==26158== +==26158== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26158== +==26158== +==26158== +==26158== HEAP SUMMARY: +==26158== in use at exit: 618,281 bytes in 8,235 blocks +==26158== total heap usage: 20,192,636 allocs, 20,184,401 frees, 2,562,969,833 bytes allocated +==26158== +==26158== LEAK SUMMARY: +==26158== definitely lost: 0 bytes in 0 blocks +==26158== indirectly lost: 0 bytes in 0 blocks +==26158== possibly lost: 0 bytes in 0 blocks +==26158== still reachable: 56 bytes in 3 blocks +==26158== suppressed: 618,225 bytes in 8,232 blocks +==26158== Reachable blocks (those to which a pointer was found) are not shown. +==26158== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26158== +==26158== For lists of detected and suppressed errors, rerun with: -s +==26158== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestNode_valgrind.txt b/log-files/2024-09-23_05-40-48/TestNode_valgrind.txt new file mode 100644 index 000000000..335efd7a4 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestNode_valgrind.txt @@ -0,0 +1,73 @@ +==24490== Memcheck, a memory error detector +==24490== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24490== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24490== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNode -malloc_debug -malloc_dump -memory_info +==24490== Parent PID: 24048 +==24490== +==24490== +==24490== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24490== Open file descriptor 12: +==24490== at 0x6C9607D: pipe (pipe.c:29) +==24490== by 0x100C507D: ??? +==24490== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24490== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24490== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24490== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24490== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24490== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24490== by 0x13DE14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24490== by 0x138509: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24490== by 0x13B556: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24490== by 0x13B3F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24490== by 0x13BA8D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24490== by 0x136925: main (TestNode.cpp:19) +==24490== +==24490== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24490== at 0x6C9AA1C: __open_nocancel (open64_nocancel.c:39) +==24490== by 0x6C1EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24490== by 0x6590822: ??? +==24490== by 0x659096F: ??? +==24490== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24490== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24490== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24490== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24490== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24490== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24490== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24490== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24490== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24490== by 0x13DE14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24490== by 0x138509: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24490== by 0x13B556: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24490== by 0x13B3F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24490== by 0x13BA8D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24490== by 0x136925: main (TestNode.cpp:19) +==24490== +==24490== Open file descriptor 113: +==24490== +==24490== +==24490== Open file descriptor 110: +==24490== +==24490== +==24490== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNode_valgrind.txt +==24490== +==24490== +==24490== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24490== +==24490== +==24490== +==24490== HEAP SUMMARY: +==24490== in use at exit: 618,226 bytes in 8,238 blocks +==24490== total heap usage: 47,489 allocs, 39,251 frees, 1,338,425,440 bytes allocated +==24490== +==24490== LEAK SUMMARY: +==24490== definitely lost: 0 bytes in 0 blocks +==24490== indirectly lost: 0 bytes in 0 blocks +==24490== possibly lost: 0 bytes in 0 blocks +==24490== still reachable: 24 bytes in 2 blocks +==24490== suppressed: 618,202 bytes in 8,236 blocks +==24490== Reachable blocks (those to which a pointer was found) are not shown. +==24490== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24490== +==24490== For lists of detected and suppressed errors, rerun with: -s +==24490== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestNodesOnlyMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestNodesOnlyMesh_valgrind.txt new file mode 100644 index 000000000..161c4573c --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24503== Memcheck, a memory error detector +==24503== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24503== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24503== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==24503== Parent PID: 24048 +==24503== +==24503== +==24503== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24503== Open file descriptor 12: +==24503== at 0x6D7D07D: pipe (pipe.c:29) +==24503== by 0x100C507D: ??? +==24503== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24503== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24503== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24503== by 0x7017D38: PetscInitialize (pinit.c:924) +==24503== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24503== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24503== by 0x143026: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24503== by 0x13D7DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24503== by 0x14093C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24503== by 0x1407DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24503== by 0x140E73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24503== by 0x13BC05: main (TestNodesOnlyMesh.cpp:19) +==24503== +==24503== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24503== at 0x6D81A1C: __open_nocancel (open64_nocancel.c:39) +==24503== by 0x6D05BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24503== by 0x6590822: ??? +==24503== by 0x659096F: ??? +==24503== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24503== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24503== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24503== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24503== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24503== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24503== by 0x7017D38: PetscInitialize (pinit.c:924) +==24503== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24503== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24503== by 0x143026: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24503== by 0x13D7DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24503== by 0x14093C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24503== by 0x1407DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24503== by 0x140E73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24503== by 0x13BC05: main (TestNodesOnlyMesh.cpp:19) +==24503== +==24503== Open file descriptor 113: +==24503== +==24503== +==24503== Open file descriptor 110: +==24503== +==24503== +==24503== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodesOnlyMesh_valgrind.txt +==24503== +==24503== +==24503== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24503== +==24503== +==24503== +==24503== HEAP SUMMARY: +==24503== in use at exit: 618,226 bytes in 8,238 blocks +==24503== total heap usage: 359,483 allocs, 351,245 frees, 1,358,354,337 bytes allocated +==24503== +==24503== LEAK SUMMARY: +==24503== definitely lost: 0 bytes in 0 blocks +==24503== indirectly lost: 0 bytes in 0 blocks +==24503== possibly lost: 0 bytes in 0 blocks +==24503== still reachable: 24 bytes in 2 blocks +==24503== suppressed: 618,202 bytes in 8,236 blocks +==24503== Reachable blocks (those to which a pointer was found) are not shown. +==24503== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24503== +==24503== For lists of detected and suppressed errors, rerun with: -s +==24503== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestNonCachedTetrahedralMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestNonCachedTetrahedralMesh_valgrind.txt new file mode 100644 index 000000000..7e22cdc50 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestNonCachedTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24505== Memcheck, a memory error detector +==24505== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24505== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24505== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNonCachedTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==24505== Parent PID: 24048 +==24505== +==24505== +==24505== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24505== Open file descriptor 12: +==24505== at 0x6C9607D: pipe (pipe.c:29) +==24505== by 0x100C507D: ??? +==24505== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24505== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24505== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24505== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24505== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24505== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24505== by 0x121954: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24505== by 0x11CD9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24505== by 0x11F7E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24505== by 0x11F682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24505== by 0x11FD19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24505== by 0x11B1C5: main (TestNonCachedTetrahedralMesh.cpp:19) +==24505== +==24505== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24505== at 0x6C9AA1C: __open_nocancel (open64_nocancel.c:39) +==24505== by 0x6C1EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24505== by 0x6590822: ??? +==24505== by 0x659096F: ??? +==24505== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24505== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24505== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24505== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24505== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24505== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24505== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24505== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24505== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24505== by 0x121954: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24505== by 0x11CD9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24505== by 0x11F7E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24505== by 0x11F682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24505== by 0x11FD19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24505== by 0x11B1C5: main (TestNonCachedTetrahedralMesh.cpp:19) +==24505== +==24505== Open file descriptor 113: +==24505== +==24505== +==24505== Open file descriptor 110: +==24505== +==24505== +==24505== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonCachedTetrahedralMesh_valgrind.txt +==24505== +==24505== +==24505== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24505== +==24505== +==24505== +==24505== HEAP SUMMARY: +==24505== in use at exit: 618,153 bytes in 8,234 blocks +==24505== total heap usage: 16,013,252 allocs, 16,005,018 frees, 3,441,282,699 bytes allocated +==24505== +==24505== LEAK SUMMARY: +==24505== definitely lost: 0 bytes in 0 blocks +==24505== indirectly lost: 0 bytes in 0 blocks +==24505== possibly lost: 0 bytes in 0 blocks +==24505== still reachable: 24 bytes in 2 blocks +==24505== suppressed: 618,129 bytes in 8,232 blocks +==24505== Reachable blocks (those to which a pointer was found) are not shown. +==24505== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24505== +==24505== For lists of detected and suppressed errors, rerun with: -s +==24505== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-23_05-40-48/TestNonlinearElasticityTools_valgrind.txt b/log-files/2024-09-23_05-40-48/TestNonlinearElasticityTools_valgrind.txt new file mode 100644 index 000000000..7943c6bbf --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestNonlinearElasticityTools_valgrind.txt @@ -0,0 +1,73 @@ +==25382== Memcheck, a memory error detector +==25382== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25382== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25382== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestNonlinearElasticityTools -malloc_debug -malloc_dump -memory_info +==25382== Parent PID: 24048 +==25382== +==25382== +==25382== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25382== Open file descriptor 12: +==25382== at 0x6DD407D: pipe (pipe.c:29) +==25382== by 0x106D907D: ??? +==25382== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25382== by 0x88A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25382== by 0x883FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25382== by 0x740BD38: PetscInitialize (pinit.c:924) +==25382== by 0x66D71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25382== by 0x66D7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25382== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25382== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25382== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25382== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25382== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25382== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) +==25382== +==25382== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25382== at 0x6DD8A1C: __open_nocancel (open64_nocancel.c:39) +==25382== by 0x6D5CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25382== by 0x6712822: ??? +==25382== by 0x671296F: ??? +==25382== by 0xC0846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25382== by 0xC084938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25382== by 0xC03A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25382== by 0xBFDF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25382== by 0x88A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25382== by 0x883FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25382== by 0x740BD38: PetscInitialize (pinit.c:924) +==25382== by 0x66D71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25382== by 0x66D7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25382== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25382== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25382== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25382== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25382== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25382== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) +==25382== +==25382== Open file descriptor 113: +==25382== +==25382== +==25382== Open file descriptor 110: +==25382== +==25382== +==25382== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonlinearElasticityTools_valgrind.txt +==25382== +==25382== +==25382== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25382== +==25382== +==25382== +==25382== HEAP SUMMARY: +==25382== in use at exit: 618,274 bytes in 8,238 blocks +==25382== total heap usage: 57,771 allocs, 49,533 frees, 1,339,460,386 bytes allocated +==25382== +==25382== LEAK SUMMARY: +==25382== definitely lost: 0 bytes in 0 blocks +==25382== indirectly lost: 0 bytes in 0 blocks +==25382== possibly lost: 0 bytes in 0 blocks +==25382== still reachable: 24 bytes in 2 blocks +==25382== suppressed: 618,250 bytes in 8,236 blocks +==25382== Reachable blocks (those to which a pointer was found) are not shown. +==25382== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25382== +==25382== For lists of detected and suppressed errors, rerun with: -s +==25382== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestNonlinearSolvers_valgrind.txt b/log-files/2024-09-23_05-40-48/TestNonlinearSolvers_valgrind.txt new file mode 100644 index 000000000..33a05bcc7 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestNonlinearSolvers_valgrind.txt @@ -0,0 +1,73 @@ +==24361== Memcheck, a memory error detector +==24361== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24361== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24361== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestNonlinearSolvers -malloc_debug -malloc_dump -memory_info +==24361== Parent PID: 24048 +==24361== +==24361== +==24361== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24361== Open file descriptor 12: +==24361== at 0x60C107D: pipe (pipe.c:29) +==24361== by 0xAF3907D: ??? +==24361== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24361== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24361== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24361== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24361== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24361== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24361== by 0x1143C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24361== by 0x10FB69: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24361== by 0x1123C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24361== by 0x112266: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24361== by 0x1128FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24361== by 0x10D915: main (TestNonlinearSolvers.cpp:19) +==24361== +==24361== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24361== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24361== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24361== by 0x5D42822: ??? +==24361== by 0x5D4296F: ??? +==24361== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24361== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24361== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24361== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24361== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24361== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24361== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24361== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24361== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24361== by 0x1143C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24361== by 0x10FB69: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24361== by 0x1123C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24361== by 0x112266: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24361== by 0x1128FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24361== by 0x10D915: main (TestNonlinearSolvers.cpp:19) +==24361== +==24361== Open file descriptor 113: +==24361== +==24361== +==24361== Open file descriptor 110: +==24361== +==24361== +==24361== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonlinearSolvers_valgrind.txt +==24361== +==24361== +==24361== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24361== +==24361== +==24361== +==24361== HEAP SUMMARY: +==24361== in use at exit: 617,858 bytes in 8,238 blocks +==24361== total heap usage: 101,426 allocs, 93,188 frees, 1,348,557,721 bytes allocated +==24361== +==24361== LEAK SUMMARY: +==24361== definitely lost: 0 bytes in 0 blocks +==24361== indirectly lost: 0 bytes in 0 blocks +==24361== possibly lost: 0 bytes in 0 blocks +==24361== still reachable: 24 bytes in 2 blocks +==24361== suppressed: 617,834 bytes in 8,236 blocks +==24361== Reachable blocks (those to which a pointer was found) are not shown. +==24361== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24361== +==24361== For lists of detected and suppressed errors, rerun with: -s +==24361== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestNormallyDistributedTargetAreaModifier_valgrind.txt b/log-files/2024-09-23_05-40-48/TestNormallyDistributedTargetAreaModifier_valgrind.txt new file mode 100644 index 000000000..6efe372a6 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestNormallyDistributedTargetAreaModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26533== Memcheck, a memory error detector +==26533== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26533== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26533== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNormallyDistributedTargetAreaModifier -malloc_debug -malloc_dump -memory_info +==26533== Parent PID: 24048 +==26533== +==26533== +==26533== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26533== Open file descriptor 12: +==26533== at 0x10CF207D: pipe (pipe.c:29) +==26533== by 0x196AD07D: ??? +==26533== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26533== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26533== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26533== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26533== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26533== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26533== by 0x139D83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26533== by 0x1324FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26533== by 0x1357FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26533== by 0x13569C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26533== by 0x135D33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26533== by 0x130925: main (TestNormallyDistributedTargetAreaModifier.cpp:19) +==26533== +==26533== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26533== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26533== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26533== by 0xF137822: ??? +==26533== by 0xF13796F: ??? +==26533== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26533== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26533== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26533== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26533== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26533== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26533== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26533== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26533== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26533== by 0x139D83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26533== by 0x1324FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26533== by 0x1357FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26533== by 0x13569C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26533== by 0x135D33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26533== by 0x130925: main (TestNormallyDistributedTargetAreaModifier.cpp:19) +==26533== +==26533== Open file descriptor 113: +==26533== +==26533== +==26533== Open file descriptor 110: +==26533== +==26533== +==26533== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNormallyDistributedTargetAreaModifier_valgrind.txt +==26533== +==26533== +==26533== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26533== +==26533== +==26533== +==26533== HEAP SUMMARY: +==26533== in use at exit: 618,354 bytes in 8,239 blocks +==26533== total heap usage: 581,794 allocs, 573,555 frees, 1,435,424,977 bytes allocated +==26533== +==26533== LEAK SUMMARY: +==26533== definitely lost: 0 bytes in 0 blocks +==26533== indirectly lost: 0 bytes in 0 blocks +==26533== possibly lost: 0 bytes in 0 blocks +==26533== still reachable: 56 bytes in 3 blocks +==26533== suppressed: 618,298 bytes in 8,236 blocks +==26533== Reachable blocks (those to which a pointer was found) are not shown. +==26533== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26533== +==26533== For lists of detected and suppressed errors, rerun with: -s +==26533== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestNumericFileComparison_valgrind.txt b/log-files/2024-09-23_05-40-48/TestNumericFileComparison_valgrind.txt new file mode 100644 index 000000000..28f1ef32e --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestNumericFileComparison_valgrind.txt @@ -0,0 +1,73 @@ +==24199== Memcheck, a memory error detector +==24199== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24199== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24199== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestNumericFileComparison -malloc_debug -malloc_dump -memory_info +==24199== Parent PID: 24048 +==24199== +==24199== +==24199== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24199== Open file descriptor 12: +==24199== at 0x4CB207D: pipe (pipe.c:29) +==24199== by 0xAEA507D: ??? +==24199== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24199== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24199== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24199== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24199== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24199== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24199== by 0x115A5C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24199== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24199== by 0x112A1A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24199== by 0x112915: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24199== by 0x112F29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24199== by 0x10EA95: main (TestNumericFileComparison.cpp:18) +==24199== +==24199== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24199== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24199== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24199== by 0x4935822: ??? +==24199== by 0x493596F: ??? +==24199== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24199== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24199== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24199== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24199== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24199== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24199== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24199== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24199== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24199== by 0x115A5C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24199== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24199== by 0x112A1A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24199== by 0x112915: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24199== by 0x112F29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24199== by 0x10EA95: main (TestNumericFileComparison.cpp:18) +==24199== +==24199== Open file descriptor 113: +==24199== +==24199== +==24199== Open file descriptor 110: +==24199== +==24199== +==24199== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNumericFileComparison_valgrind.txt +==24199== +==24199== +==24199== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24199== +==24199== +==24199== +==24199== HEAP SUMMARY: +==24199== in use at exit: 617,842 bytes in 8,238 blocks +==24199== total heap usage: 45,725 allocs, 37,487 frees, 1,338,466,211 bytes allocated +==24199== +==24199== LEAK SUMMARY: +==24199== definitely lost: 0 bytes in 0 blocks +==24199== indirectly lost: 0 bytes in 0 blocks +==24199== possibly lost: 0 bytes in 0 blocks +==24199== still reachable: 24 bytes in 2 blocks +==24199== suppressed: 617,818 bytes in 8,236 blocks +==24199== Reachable blocks (those to which a pointer was found) are not shown. +==24199== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24199== +==24199== For lists of detected and suppressed errors, rerun with: -s +==24199== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestNumericalMethods_valgrind.txt b/log-files/2024-09-23_05-40-48/TestNumericalMethods_valgrind.txt new file mode 100644 index 000000000..4e133b2fb --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestNumericalMethods_valgrind.txt @@ -0,0 +1,73 @@ +==26474== Memcheck, a memory error detector +==26474== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26474== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26474== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNumericalMethods -malloc_debug -malloc_dump -memory_info +==26474== Parent PID: 24048 +==26474== +==26474== +==26474== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26474== Open file descriptor 12: +==26474== at 0xF8E007D: pipe (pipe.c:29) +==26474== by 0x196AD07D: ??? +==26474== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26474== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26474== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26474== by 0x10210D38: PetscInitialize (pinit.c:924) +==26474== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26474== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26474== by 0x13A648: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26474== by 0x13504D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26474== by 0x137DD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26474== by 0x137C74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26474== by 0x13830B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26474== by 0x133475: main (TestNumericalMethods.cpp:19) +==26474== +==26474== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26474== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==26474== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26474== by 0xF137822: ??? +==26474== by 0xF13796F: ??? +==26474== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26474== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26474== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26474== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26474== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26474== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26474== by 0x10210D38: PetscInitialize (pinit.c:924) +==26474== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26474== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26474== by 0x13A648: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26474== by 0x13504D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26474== by 0x137DD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26474== by 0x137C74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26474== by 0x13830B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26474== by 0x133475: main (TestNumericalMethods.cpp:19) +==26474== +==26474== Open file descriptor 113: +==26474== +==26474== +==26474== Open file descriptor 110: +==26474== +==26474== +==26474== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNumericalMethods_valgrind.txt +==26474== +==26474== +==26474== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26474== +==26474== +==26474== +==26474== HEAP SUMMARY: +==26474== in use at exit: 618,354 bytes in 8,239 blocks +==26474== total heap usage: 69,187 allocs, 60,948 frees, 1,341,833,048 bytes allocated +==26474== +==26474== LEAK SUMMARY: +==26474== definitely lost: 0 bytes in 0 blocks +==26474== indirectly lost: 0 bytes in 0 blocks +==26474== possibly lost: 0 bytes in 0 blocks +==26474== still reachable: 56 bytes in 3 blocks +==26474== suppressed: 618,298 bytes in 8,236 blocks +==26474== Reachable blocks (those to which a pointer was found) are not shown. +==26474== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26474== +==26474== For lists of detected and suppressed errors, rerun with: -s +==26474== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestObjectCommunicator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestObjectCommunicator_valgrind.txt new file mode 100644 index 000000000..268c19fa9 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestObjectCommunicator_valgrind.txt @@ -0,0 +1,73 @@ +==24200== Memcheck, a memory error detector +==24200== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24200== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24200== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestObjectCommunicator -malloc_debug -malloc_dump -memory_info +==24200== Parent PID: 24048 +==24200== +==24200== +==24200== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24200== Open file descriptor 12: +==24200== at 0x61AB07D: pipe (pipe.c:29) +==24200== by 0xAEA507D: ??? +==24200== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24200== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24200== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24200== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24200== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24200== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24200== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24200== by 0x11C051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24200== by 0x11F5CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24200== by 0x11F46C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24200== by 0x11FB03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24200== by 0x11A325: main (TestObjectCommunicator.cpp:19) +==24200== +==24200== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24200== at 0x61AFA1C: __open_nocancel (open64_nocancel.c:39) +==24200== by 0x6133BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24200== by 0x4935822: ??? +==24200== by 0x493596F: ??? +==24200== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24200== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24200== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24200== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24200== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24200== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24200== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24200== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24200== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24200== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24200== by 0x11C051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24200== by 0x11F5CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24200== by 0x11F46C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24200== by 0x11FB03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24200== by 0x11A325: main (TestObjectCommunicator.cpp:19) +==24200== +==24200== Open file descriptor 113: +==24200== +==24200== +==24200== Open file descriptor 110: +==24200== +==24200== +==24200== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestObjectCommunicator_valgrind.txt +==24200== +==24200== +==24200== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24200== +==24200== +==24200== +==24200== HEAP SUMMARY: +==24200== in use at exit: 617,842 bytes in 8,238 blocks +==24200== total heap usage: 44,950 allocs, 36,712 frees, 1,338,161,722 bytes allocated +==24200== +==24200== LEAK SUMMARY: +==24200== definitely lost: 0 bytes in 0 blocks +==24200== indirectly lost: 0 bytes in 0 blocks +==24200== possibly lost: 0 bytes in 0 blocks +==24200== still reachable: 24 bytes in 2 blocks +==24200== suppressed: 617,818 bytes in 8,236 blocks +==24200== Reachable blocks (those to which a pointer was found) are not shown. +==24200== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24200== +==24200== For lists of detected and suppressed errors, rerun with: -s +==24200== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestObsoleteBoxCollection_valgrind.txt b/log-files/2024-09-23_05-40-48/TestObsoleteBoxCollection_valgrind.txt new file mode 100644 index 000000000..520f978d9 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestObsoleteBoxCollection_valgrind.txt @@ -0,0 +1,73 @@ +==24706== Memcheck, a memory error detector +==24706== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24706== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24706== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestObsoleteBoxCollection -malloc_debug -malloc_dump -memory_info +==24706== Parent PID: 24048 +==24706== +==24706== +==24706== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24706== Open file descriptor 12: +==24706== at 0x6D3B07D: pipe (pipe.c:29) +==24706== by 0x100C507D: ??? +==24706== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24706== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24706== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24706== by 0x7017D38: PetscInitialize (pinit.c:924) +==24706== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24706== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24706== by 0x153352: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24706== by 0x14DF8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24706== by 0x150FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24706== by 0x150E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24706== by 0x1514D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24706== by 0x14C3B5: main (TestObsoleteBoxCollection.cpp:19) +==24706== +==24706== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24706== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24706== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24706== by 0x6590822: ??? +==24706== by 0x659096F: ??? +==24706== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24706== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24706== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24706== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24706== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24706== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24706== by 0x7017D38: PetscInitialize (pinit.c:924) +==24706== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24706== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24706== by 0x153352: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24706== by 0x14DF8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24706== by 0x150FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24706== by 0x150E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24706== by 0x1514D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24706== by 0x14C3B5: main (TestObsoleteBoxCollection.cpp:19) +==24706== +==24706== Open file descriptor 113: +==24706== +==24706== +==24706== Open file descriptor 110: +==24706== +==24706== +==24706== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestObsoleteBoxCollection_valgrind.txt +==24706== +==24706== +==24706== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24706== +==24706== +==24706== +==24706== HEAP SUMMARY: +==24706== in use at exit: 618,226 bytes in 8,238 blocks +==24706== total heap usage: 276,947 allocs, 268,709 frees, 1,447,218,086 bytes allocated +==24706== +==24706== LEAK SUMMARY: +==24706== definitely lost: 0 bytes in 0 blocks +==24706== indirectly lost: 0 bytes in 0 blocks +==24706== possibly lost: 0 bytes in 0 blocks +==24706== still reachable: 24 bytes in 2 blocks +==24706== suppressed: 618,202 bytes in 8,236 blocks +==24706== Reachable blocks (those to which a pointer was found) are not shown. +==24706== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24706== +==24706== For lists of detected and suppressed errors, rerun with: -s +==24706== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt new file mode 100644 index 000000000..98cf581d0 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40371== Memcheck, a memory error detector +==40371== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40371== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40371== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info +==40371== Parent PID: 24048 +==40371== +==40371== +==40371== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40371== Open file descriptor 12: +==40371== at 0x10B9907D: pipe (pipe.c:29) +==40371== by 0x1B36D07D: ??? +==40371== by 0x155114CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40371== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40371== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40371== by 0xF131D38: PetscInitialize (pinit.c:924) +==40371== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40371== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40371== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40371== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40371== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40371== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40371== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40371== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) +==40371== +==40371== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40371== at 0x10B9DA1C: __open_nocancel (open64_nocancel.c:39) +==40371== by 0x10B21BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40371== by 0xEFDE822: ??? +==40371== by 0xEFDE96F: ??? +==40371== by 0x155B66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40371== by 0x155B6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40371== by 0x1556C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40371== by 0x155112DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40371== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40371== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40371== by 0xF131D38: PetscInitialize (pinit.c:924) +==40371== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40371== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40371== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40371== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40371== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40371== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40371== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40371== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) +==40371== +==40371== Open file descriptor 113: +==40371== +==40371== +==40371== Open file descriptor 110: +==40371== +==40371== +==40371== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt +==40371== +==40371== +==40371== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40371== +==40371== +==40371== +==40371== HEAP SUMMARY: +==40371== in use at exit: 618,434 bytes in 8,240 blocks +==40371== total heap usage: 862,014 allocs, 853,774 frees, 1,460,910,532 bytes allocated +==40371== +==40371== LEAK SUMMARY: +==40371== definitely lost: 0 bytes in 0 blocks +==40371== indirectly lost: 0 bytes in 0 blocks +==40371== possibly lost: 0 bytes in 0 blocks +==40371== still reachable: 120 bytes in 4 blocks +==40371== suppressed: 618,314 bytes in 8,236 blocks +==40371== Reachable blocks (those to which a pointer was found) are not shown. +==40371== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40371== +==40371== For lists of detected and suppressed errors, rerun with: -s +==40371== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestOdeBasedCellCycleModels_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOdeBasedCellCycleModels_valgrind.txt new file mode 100644 index 000000000..fae8cceeb --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOdeBasedCellCycleModels_valgrind.txt @@ -0,0 +1,73 @@ +==25504== Memcheck, a memory error detector +==25504== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25504== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25504== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeBasedCellCycleModels -malloc_debug -malloc_dump -memory_info +==25504== Parent PID: 24048 +==25504== +==25504== +==25504== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25504== Open file descriptor 12: +==25504== at 0xEF9407D: pipe (pipe.c:29) +==25504== by 0x196AC07D: ??? +==25504== by 0x13C514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25504== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25504== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25504== by 0xD871D38: PetscInitialize (pinit.c:924) +==25504== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25504== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25504== by 0x1361D7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25504== by 0x12EF6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25504== by 0x131C2A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25504== by 0x131ACA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25504== by 0x132161: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25504== by 0x12B8A5: main (TestOdeBasedCellCycleModels.cpp:19) +==25504== +==25504== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25504== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25504== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25504== by 0xD71E822: ??? +==25504== by 0xD71E96F: ??? +==25504== by 0x13CF66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25504== by 0x13CF6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25504== by 0x13CAC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25504== by 0x13C512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25504== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25504== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25504== by 0xD871D38: PetscInitialize (pinit.c:924) +==25504== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25504== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25504== by 0x1361D7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25504== by 0x12EF6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25504== by 0x131C2A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25504== by 0x131ACA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25504== by 0x132161: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25504== by 0x12B8A5: main (TestOdeBasedCellCycleModels.cpp:19) +==25504== +==25504== Open file descriptor 113: +==25504== +==25504== +==25504== Open file descriptor 110: +==25504== +==25504== +==25504== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModels_valgrind.txt +==25504== +==25504== +==25504== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25504== +==25504== +==25504== +==25504== HEAP SUMMARY: +==25504== in use at exit: 618,297 bytes in 8,236 blocks +==25504== total heap usage: 4,179,307 allocs, 4,171,071 frees, 1,770,075,834 bytes allocated +==25504== +==25504== LEAK SUMMARY: +==25504== definitely lost: 0 bytes in 0 blocks +==25504== indirectly lost: 0 bytes in 0 blocks +==25504== possibly lost: 0 bytes in 0 blocks +==25504== still reachable: 72 bytes in 4 blocks +==25504== suppressed: 618,225 bytes in 8,232 blocks +==25504== Reachable blocks (those to which a pointer was found) are not shown. +==25504== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25504== +==25504== For lists of detected and suppressed errors, rerun with: -s +==25504== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestOdeBasedSrnModels_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOdeBasedSrnModels_valgrind.txt new file mode 100644 index 000000000..bb82ea9aa --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOdeBasedSrnModels_valgrind.txt @@ -0,0 +1,73 @@ +==25514== Memcheck, a memory error detector +==25514== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25514== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25514== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeBasedSrnModels -malloc_debug -malloc_dump -memory_info +==25514== Parent PID: 24048 +==25514== +==25514== +==25514== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25514== Open file descriptor 12: +==25514== at 0xED5007D: pipe (pipe.c:29) +==25514== by 0x196AC07D: ??? +==25514== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25514== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25514== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25514== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25514== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25514== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25514== by 0x12E3B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25514== by 0x1272FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25514== by 0x129E8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25514== by 0x129D2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25514== by 0x12A3C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25514== by 0x125725: main (TestOdeBasedSrnModels.cpp:19) +==25514== +==25514== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25514== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25514== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25514== by 0xD4DA822: ??? +==25514== by 0xD4DA96F: ??? +==25514== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25514== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25514== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25514== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25514== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25514== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25514== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25514== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25514== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25514== by 0x12E3B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25514== by 0x1272FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25514== by 0x129E8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25514== by 0x129D2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25514== by 0x12A3C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25514== by 0x125725: main (TestOdeBasedSrnModels.cpp:19) +==25514== +==25514== Open file descriptor 113: +==25514== +==25514== +==25514== Open file descriptor 110: +==25514== +==25514== +==25514== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedSrnModels_valgrind.txt +==25514== +==25514== +==25514== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25514== +==25514== +==25514== +==25514== HEAP SUMMARY: +==25514== in use at exit: 618,370 bytes in 8,240 blocks +==25514== total heap usage: 57,246 allocs, 49,006 frees, 1,339,480,278 bytes allocated +==25514== +==25514== LEAK SUMMARY: +==25514== definitely lost: 0 bytes in 0 blocks +==25514== indirectly lost: 0 bytes in 0 blocks +==25514== possibly lost: 0 bytes in 0 blocks +==25514== still reachable: 72 bytes in 4 blocks +==25514== suppressed: 618,298 bytes in 8,236 blocks +==25514== Reachable blocks (those to which a pointer was found) are not shown. +==25514== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25514== +==25514== For lists of detected and suppressed errors, rerun with: -s +==25514== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestOdeLinearSystemSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOdeLinearSystemSolver_valgrind.txt new file mode 100644 index 000000000..151ecf8b4 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOdeLinearSystemSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25770== Memcheck, a memory error detector +==25770== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25770== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25770== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeLinearSystemSolver -malloc_debug -malloc_dump -memory_info +==25770== Parent PID: 24048 +==25770== +==25770== +==25770== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25770== Open file descriptor 12: +==25770== at 0xEC6607D: pipe (pipe.c:29) +==25770== by 0x196AD07D: ??? +==25770== by 0x14C8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25770== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25770== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25770== by 0xD659D38: PetscInitialize (pinit.c:924) +==25770== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25770== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25770== by 0x112010: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25770== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25770== by 0x1100A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25770== by 0x10FFA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25770== by 0x1105B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25770== by 0x10C555: main (TestOdeLinearSystemSolver.cpp:18) +==25770== +==25770== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25770== at 0xEC6AA1C: __open_nocancel (open64_nocancel.c:39) +==25770== by 0xEBEEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25770== by 0xE8E9822: ??? +==25770== by 0xE8E996F: ??? +==25770== by 0x14D306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25770== by 0x14D30938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25770== by 0x14CE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25770== by 0x14C8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25770== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25770== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25770== by 0xD659D38: PetscInitialize (pinit.c:924) +==25770== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25770== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25770== by 0x112010: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25770== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25770== by 0x1100A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25770== by 0x10FFA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25770== by 0x1105B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25770== by 0x10C555: main (TestOdeLinearSystemSolver.cpp:18) +==25770== +==25770== Open file descriptor 113: +==25770== +==25770== +==25770== Open file descriptor 110: +==25770== +==25770== +==25770== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeLinearSystemSolver_valgrind.txt +==25770== +==25770== +==25770== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25770== +==25770== +==25770== +==25770== HEAP SUMMARY: +==25770== in use at exit: 618,322 bytes in 8,238 blocks +==25770== total heap usage: 55,511 allocs, 47,273 frees, 1,339,626,963 bytes allocated +==25770== +==25770== LEAK SUMMARY: +==25770== definitely lost: 0 bytes in 0 blocks +==25770== indirectly lost: 0 bytes in 0 blocks +==25770== possibly lost: 0 bytes in 0 blocks +==25770== still reachable: 24 bytes in 2 blocks +==25770== suppressed: 618,298 bytes in 8,236 blocks +==25770== Reachable blocks (those to which a pointer was found) are not shown. +==25770== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25770== +==25770== For lists of detected and suppressed errors, rerun with: -s +==25770== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestOffLatticeCryptProjectionSimulation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOffLatticeCryptProjectionSimulation_valgrind.txt new file mode 100644 index 000000000..bd39db6f5 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOffLatticeCryptProjectionSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==40544== Memcheck, a memory error detector +==40544== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40544== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40544== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOffLatticeCryptProjectionSimulation -malloc_debug -malloc_dump -memory_info +==40544== Parent PID: 24048 +==40544== +==40544== +==40544== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40544== Open file descriptor 12: +==40544== at 0x1265707D: pipe (pipe.c:29) +==40544== by 0x1B36D07D: ??? +==40544== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40544== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40544== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40544== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40544== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40544== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40544== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40544== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40544== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40544== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40544== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40544== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) +==40544== +==40544== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40544== at 0x1265BA1C: __open_nocancel (open64_nocancel.c:39) +==40544== by 0x125DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40544== by 0x11D75822: ??? +==40544== by 0x11D7596F: ??? +==40544== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40544== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40544== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40544== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40544== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40544== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40544== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40544== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40544== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40544== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40544== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40544== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40544== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40544== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40544== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) +==40544== +==40544== Open file descriptor 113: +==40544== +==40544== +==40544== Open file descriptor 110: +==40544== +==40544== +==40544== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeCryptProjectionSimulation_valgrind.txt +==40544== +==40544== +==40544== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40544== +==40544== +==40544== +==40544== HEAP SUMMARY: +==40544== in use at exit: 618,370 bytes in 8,239 blocks +==40544== total heap usage: 1,343,530 allocs, 1,335,291 frees, 1,452,945,750 bytes allocated +==40544== +==40544== LEAK SUMMARY: +==40544== definitely lost: 0 bytes in 0 blocks +==40544== indirectly lost: 0 bytes in 0 blocks +==40544== possibly lost: 0 bytes in 0 blocks +==40544== still reachable: 56 bytes in 3 blocks +==40544== suppressed: 618,314 bytes in 8,236 blocks +==40544== Reachable blocks (those to which a pointer was found) are not shown. +==40544== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40544== +==40544== For lists of detected and suppressed errors, rerun with: -s +==40544== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestOffLatticeRandomFieldGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOffLatticeRandomFieldGenerator_valgrind.txt new file mode 100644 index 000000000..a0b0fe0d5 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOffLatticeRandomFieldGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24909== Memcheck, a memory error detector +==24909== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24909== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24909== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestOffLatticeRandomFieldGenerator -malloc_debug -malloc_dump -memory_info +==24909== Parent PID: 24048 +==24909== +==24909== +==24909== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24909== Open file descriptor 12: +==24909== at 0x7E5307D: pipe (pipe.c:29) +==24909== by 0x100C307D: ??? +==24909== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24909== by 0x7AA2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24909== by 0x7A3BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24909== by 0x670FD38: PetscInitialize (pinit.c:924) +==24909== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24909== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24909== by 0x1256B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24909== by 0x121073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24909== by 0x123452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24909== by 0x12334D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24909== by 0x123961: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24909== by 0x11F875: main (TestOffLatticeRandomFieldGenerator.cpp:18) +==24909== +==24909== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24909== at 0x7E57A1C: __open_nocancel (open64_nocancel.c:39) +==24909== by 0x7DDBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24909== by 0x799F822: ??? +==24909== by 0x799F96F: ??? +==24909== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24909== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24909== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24909== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24909== by 0x7AA2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24909== by 0x7A3BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24909== by 0x670FD38: PetscInitialize (pinit.c:924) +==24909== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24909== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24909== by 0x1256B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24909== by 0x121073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24909== by 0x123452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24909== by 0x12334D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24909== by 0x123961: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24909== by 0x11F875: main (TestOffLatticeRandomFieldGenerator.cpp:18) +==24909== +==24909== Open file descriptor 113: +==24909== +==24909== +==24909== Open file descriptor 110: +==24909== +==24909== +==24909== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeRandomFieldGenerator_valgrind.txt +==24909== +==24909== +==24909== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24909== +==24909== +==24909== +==24909== HEAP SUMMARY: +==24909== in use at exit: 620,778 bytes in 8,239 blocks +==24909== total heap usage: 515,645 allocs, 507,406 frees, 1,362,756,964 bytes allocated +==24909== +==24909== LEAK SUMMARY: +==24909== definitely lost: 0 bytes in 0 blocks +==24909== indirectly lost: 0 bytes in 0 blocks +==24909== possibly lost: 0 bytes in 0 blocks +==24909== still reachable: 2,576 bytes in 3 blocks +==24909== suppressed: 618,202 bytes in 8,236 blocks +==24909== Reachable blocks (those to which a pointer was found) are not shown. +==24909== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24909== +==24909== For lists of detected and suppressed errors, rerun with: -s +==24909== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestOffLatticeSimulation3d_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOffLatticeSimulation3d_valgrind.txt new file mode 100644 index 000000000..0c6cd6474 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOffLatticeSimulation3d_valgrind.txt @@ -0,0 +1,73 @@ +==26583== Memcheck, a memory error detector +==26583== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26583== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26583== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info +==26583== Parent PID: 24048 +==26583== +==26583== +==26583== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26583== Open file descriptor 12: +==26583== at 0x10DD907D: pipe (pipe.c:29) +==26583== by 0x196AD07D: ??? +==26583== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26583== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26583== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26583== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26583== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26583== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26583== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26583== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26583== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26583== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26583== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26583== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) +==26583== +==26583== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26583== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==26583== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26583== by 0xF137822: ??? +==26583== by 0xF13796F: ??? +==26583== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26583== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26583== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26583== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26583== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26583== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26583== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26583== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26583== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26583== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26583== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26583== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26583== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26583== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26583== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) +==26583== +==26583== Open file descriptor 113: +==26583== +==26583== +==26583== Open file descriptor 110: +==26583== +==26583== +==26583== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt +==26583== +==26583== +==26583== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26583== +==26583== +==26583== +==26583== HEAP SUMMARY: +==26583== in use at exit: 618,354 bytes in 8,239 blocks +==26583== total heap usage: 853,794 allocs, 845,555 frees, 1,503,649,767 bytes allocated +==26583== +==26583== LEAK SUMMARY: +==26583== definitely lost: 0 bytes in 0 blocks +==26583== indirectly lost: 0 bytes in 0 blocks +==26583== possibly lost: 0 bytes in 0 blocks +==26583== still reachable: 56 bytes in 3 blocks +==26583== suppressed: 618,298 bytes in 8,236 blocks +==26583== Reachable blocks (those to which a pointer was found) are not shown. +==26583== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26583== +==26583== For lists of detected and suppressed errors, rerun with: -s +==26583== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestOffLatticeSimulationWithBuskeForces_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOffLatticeSimulationWithBuskeForces_valgrind.txt new file mode 100644 index 000000000..b448f341d --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOffLatticeSimulationWithBuskeForces_valgrind.txt @@ -0,0 +1,73 @@ +==26610== Memcheck, a memory error detector +==26610== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26610== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26610== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithBuskeForces -malloc_debug -malloc_dump -memory_info +==26610== Parent PID: 24048 +==26610== +==26610== +==26610== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26610== Open file descriptor 12: +==26610== at 0xF8E007D: pipe (pipe.c:29) +==26610== by 0x196AD07D: ??? +==26610== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26610== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26610== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26610== by 0x10210D38: PetscInitialize (pinit.c:924) +==26610== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26610== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26610== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26610== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26610== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26610== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26610== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26610== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) +==26610== +==26610== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26610== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==26610== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26610== by 0xF137822: ??? +==26610== by 0xF13796F: ??? +==26610== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26610== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26610== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26610== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26610== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26610== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26610== by 0x10210D38: PetscInitialize (pinit.c:924) +==26610== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26610== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26610== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26610== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26610== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26610== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26610== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26610== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) +==26610== +==26610== Open file descriptor 113: +==26610== +==26610== +==26610== Open file descriptor 110: +==26610== +==26610== +==26610== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithBuskeForces_valgrind.txt +==26610== +==26610== +==26610== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26610== +==26610== +==26610== +==26610== HEAP SUMMARY: +==26610== in use at exit: 618,281 bytes in 8,235 blocks +==26610== total heap usage: 3,593,545 allocs, 3,585,310 frees, 4,478,246,625 bytes allocated +==26610== +==26610== LEAK SUMMARY: +==26610== definitely lost: 0 bytes in 0 blocks +==26610== indirectly lost: 0 bytes in 0 blocks +==26610== possibly lost: 0 bytes in 0 blocks +==26610== still reachable: 56 bytes in 3 blocks +==26610== suppressed: 618,225 bytes in 8,232 blocks +==26610== Reachable blocks (those to which a pointer was found) are not shown. +==26610== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26610== +==26610== For lists of detected and suppressed errors, rerun with: -s +==26610== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt new file mode 100644 index 000000000..0e6e338de --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt @@ -0,0 +1,73 @@ +==26817== Memcheck, a memory error detector +==26817== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26817== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26817== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info +==26817== Parent PID: 24048 +==26817== +==26817== +==26817== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26817== Open file descriptor 12: +==26817== at 0xF8E007D: pipe (pipe.c:29) +==26817== by 0x196AD07D: ??? +==26817== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26817== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26817== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26817== by 0x10210D38: PetscInitialize (pinit.c:924) +==26817== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26817== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26817== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26817== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26817== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26817== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26817== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26817== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) +==26817== +==26817== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26817== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==26817== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26817== by 0xF137822: ??? +==26817== by 0xF13796F: ??? +==26817== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26817== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26817== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26817== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26817== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26817== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26817== by 0x10210D38: PetscInitialize (pinit.c:924) +==26817== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26817== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26817== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26817== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26817== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26817== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26817== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26817== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) +==26817== +==26817== Open file descriptor 113: +==26817== +==26817== +==26817== Open file descriptor 110: +==26817== +==26817== +==26817== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt +==26817== +==26817== +==26817== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26817== +==26817== +==26817== +==26817== HEAP SUMMARY: +==26817== in use at exit: 618,281 bytes in 8,235 blocks +==26817== total heap usage: 6,672,056 allocs, 6,663,821 frees, 8,995,229,598 bytes allocated +==26817== +==26817== LEAK SUMMARY: +==26817== definitely lost: 0 bytes in 0 blocks +==26817== indirectly lost: 0 bytes in 0 blocks +==26817== possibly lost: 0 bytes in 0 blocks +==26817== still reachable: 56 bytes in 3 blocks +==26817== suppressed: 618,225 bytes in 8,232 blocks +==26817== Reachable blocks (those to which a pointer was found) are not shown. +==26817== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26817== +==26817== For lists of detected and suppressed errors, rerun with: -s +==26817== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..1083af59b --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26709== Memcheck, a memory error detector +==26709== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26709== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26709== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26709== Parent PID: 24048 +==26709== +==26709== +==26709== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26709== Open file descriptor 12: +==26709== at 0xF92407D: pipe (pipe.c:29) +==26709== by 0x196AD07D: ??? +==26709== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26709== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26709== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26709== by 0x10210D38: PetscInitialize (pinit.c:924) +==26709== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26709== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26709== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26709== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26709== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26709== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26709== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26709== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) +==26709== +==26709== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26709== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==26709== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26709== by 0xF137822: ??? +==26709== by 0xF13796F: ??? +==26709== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26709== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26709== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26709== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26709== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26709== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26709== by 0x10210D38: PetscInitialize (pinit.c:924) +==26709== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26709== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26709== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26709== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26709== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26709== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26709== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26709== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) +==26709== +==26709== Open file descriptor 113: +==26709== +==26709== +==26709== Open file descriptor 110: +==26709== +==26709== +==26709== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt +==26709== +==26709== +==26709== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26709== +==26709== +==26709== +==26709== HEAP SUMMARY: +==26709== in use at exit: 618,313 bytes in 8,236 blocks +==26709== total heap usage: 17,826,378 allocs, 17,818,142 frees, 30,026,993,104 bytes allocated +==26709== +==26709== LEAK SUMMARY: +==26709== definitely lost: 0 bytes in 0 blocks +==26709== indirectly lost: 0 bytes in 0 blocks +==26709== possibly lost: 0 bytes in 0 blocks +==26709== still reachable: 88 bytes in 4 blocks +==26709== suppressed: 618,225 bytes in 8,232 blocks +==26709== Reachable blocks (those to which a pointer was found) are not shown. +==26709== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26709== +==26709== For lists of detected and suppressed errors, rerun with: -s +==26709== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestOffLatticeSimulationWithPdes_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOffLatticeSimulationWithPdes_valgrind.txt new file mode 100644 index 000000000..a5bfb15ae --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOffLatticeSimulationWithPdes_valgrind.txt @@ -0,0 +1,73 @@ +==26996== Memcheck, a memory error detector +==26996== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26996== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26996== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info +==26996== Parent PID: 24048 +==26996== +==26996== +==26996== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26996== Open file descriptor 12: +==26996== at 0xFCC107D: pipe (pipe.c:29) +==26996== by 0x196AC07D: ??? +==26996== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26996== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26996== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26996== by 0x10210D38: PetscInitialize (pinit.c:924) +==26996== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26996== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26996== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26996== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26996== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26996== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26996== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26996== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) +==26996== +==26996== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26996== at 0xFCC5A1C: __open_nocancel (open64_nocancel.c:39) +==26996== by 0xFC49BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26996== by 0xF4D4822: ??? +==26996== by 0xF4D496F: ??? +==26996== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26996== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26996== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26996== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26996== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26996== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26996== by 0x10210D38: PetscInitialize (pinit.c:924) +==26996== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26996== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26996== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26996== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26996== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26996== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26996== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26996== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) +==26996== +==26996== Open file descriptor 113: +==26996== +==26996== +==26996== Open file descriptor 110: +==26996== +==26996== +==26996== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt +==26996== +==26996== +==26996== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26996== +==26996== +==26996== +==26996== HEAP SUMMARY: +==26996== in use at exit: 618,281 bytes in 8,235 blocks +==26996== total heap usage: 7,487,376 allocs, 7,479,141 frees, 2,641,934,888 bytes allocated +==26996== +==26996== LEAK SUMMARY: +==26996== definitely lost: 0 bytes in 0 blocks +==26996== indirectly lost: 0 bytes in 0 blocks +==26996== possibly lost: 0 bytes in 0 blocks +==26996== still reachable: 56 bytes in 3 blocks +==26996== suppressed: 618,225 bytes in 8,232 blocks +==26996== Reachable blocks (those to which a pointer was found) are not shown. +==26996== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26996== +==26996== For lists of detected and suppressed errors, rerun with: -s +==26996== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..78d208002 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==27302== Memcheck, a memory error detector +==27302== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==27302== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==27302== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==27302== Parent PID: 24048 +==27302== +==27302== +==27302== FILE DESCRIPTORS: 9 open (3 std) at exit. +==27302== Open file descriptor 12: +==27302== at 0x10DD907D: pipe (pipe.c:29) +==27302== by 0x196AD07D: ??? +==27302== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27302== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27302== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27302== by 0xF28AD38: PetscInitialize (pinit.c:924) +==27302== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27302== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27302== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==27302== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27302== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27302== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27302== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27302== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) +==27302== +==27302== Open file descriptor 8: /dev/shm/open_mpi.0000 +==27302== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==27302== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==27302== by 0xF137822: ??? +==27302== by 0xF13796F: ??? +==27302== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27302== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27302== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27302== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27302== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27302== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27302== by 0xF28AD38: PetscInitialize (pinit.c:924) +==27302== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27302== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27302== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==27302== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27302== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27302== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27302== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27302== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) +==27302== +==27302== Open file descriptor 113: +==27302== +==27302== +==27302== Open file descriptor 110: +==27302== +==27302== +==27302== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt +==27302== +==27302== +==27302== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==27302== +==27302== +==27302== +==27302== HEAP SUMMARY: +==27302== in use at exit: 618,281 bytes in 8,235 blocks +==27302== total heap usage: 9,703,049 allocs, 9,694,814 frees, 2,583,526,541 bytes allocated +==27302== +==27302== LEAK SUMMARY: +==27302== definitely lost: 0 bytes in 0 blocks +==27302== indirectly lost: 0 bytes in 0 blocks +==27302== possibly lost: 0 bytes in 0 blocks +==27302== still reachable: 56 bytes in 3 blocks +==27302== suppressed: 618,225 bytes in 8,232 blocks +==27302== Reachable blocks (those to which a pointer was found) are not shown. +==27302== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==27302== +==27302== For lists of detected and suppressed errors, rerun with: -s +==27302== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestOffLatticeSimulation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOffLatticeSimulation_valgrind.txt new file mode 100644 index 000000000..34f5b9fa7 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOffLatticeSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==26569== Memcheck, a memory error detector +==26569== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26569== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26569== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation -malloc_debug -malloc_dump -memory_info +==26569== Parent PID: 24048 +==26569== +==26569== +==26569== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26569== Open file descriptor 12: +==26569== at 0xF92407D: pipe (pipe.c:29) +==26569== by 0x196AD07D: ??? +==26569== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26569== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26569== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26569== by 0x10210D38: PetscInitialize (pinit.c:924) +==26569== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26569== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26569== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26569== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26569== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26569== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26569== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26569== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) +==26569== +==26569== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26569== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==26569== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26569== by 0xF137822: ??? +==26569== by 0xF13796F: ??? +==26569== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26569== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26569== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26569== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26569== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26569== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26569== by 0x10210D38: PetscInitialize (pinit.c:924) +==26569== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26569== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26569== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26569== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26569== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26569== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26569== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26569== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) +==26569== +==26569== Open file descriptor 113: +==26569== +==26569== +==26569== Open file descriptor 110: +==26569== +==26569== +==26569== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation_valgrind.txt +==26569== +==26569== +==26569== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26569== +==26569== +==26569== +==26569== HEAP SUMMARY: +==26569== in use at exit: 618,281 bytes in 8,235 blocks +==26569== total heap usage: 12,303,091 allocs, 12,294,856 frees, 3,798,134,241 bytes allocated +==26569== +==26569== LEAK SUMMARY: +==26569== definitely lost: 0 bytes in 0 blocks +==26569== indirectly lost: 0 bytes in 0 blocks +==26569== possibly lost: 0 bytes in 0 blocks +==26569== still reachable: 56 bytes in 3 blocks +==26569== suppressed: 618,225 bytes in 8,232 blocks +==26569== Reachable blocks (those to which a pointer was found) are not shown. +==26569== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26569== +==26569== For lists of detected and suppressed errors, rerun with: -s +==26569== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..0fe085540 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==27426== Memcheck, a memory error detector +==27426== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==27426== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==27426== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==27426== Parent PID: 24048 +==27426== +==27426== +==27426== FILE DESCRIPTORS: 9 open (3 std) at exit. +==27426== Open file descriptor 12: +==27426== at 0xFDA007D: pipe (pipe.c:29) +==27426== by 0x196AC07D: ??? +==27426== by 0x14DD84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27426== by 0x119FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27426== by 0x11995D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27426== by 0x1068CD38: PetscInitialize (pinit.c:924) +==27426== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27426== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27426== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27426== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27426== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27426== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27426== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27426== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) +==27426== +==27426== Open file descriptor 8: /dev/shm/open_mpi.0000 +==27426== at 0xFDA4A1C: __open_nocancel (open64_nocancel.c:39) +==27426== by 0xFD28BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==27426== by 0xF137822: ??? +==27426== by 0xF13796F: ??? +==27426== by 0x14E7D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27426== by 0x14E7D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27426== by 0x14E33922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27426== by 0x14DD82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27426== by 0x119FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27426== by 0x11995D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27426== by 0x1068CD38: PetscInitialize (pinit.c:924) +==27426== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27426== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27426== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27426== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27426== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27426== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27426== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27426== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) +==27426== +==27426== Open file descriptor 113: +==27426== +==27426== +==27426== Open file descriptor 110: +==27426== +==27426== +==27426== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt +==27426== +==27426== +==27426== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==27426== +==27426== +==27426== +==27426== HEAP SUMMARY: +==27426== in use at exit: 618,281 bytes in 8,235 blocks +==27426== total heap usage: 7,110,678 allocs, 7,102,443 frees, 8,072,009,334 bytes allocated +==27426== +==27426== LEAK SUMMARY: +==27426== definitely lost: 0 bytes in 0 blocks +==27426== indirectly lost: 0 bytes in 0 blocks +==27426== possibly lost: 0 bytes in 0 blocks +==27426== still reachable: 56 bytes in 3 blocks +==27426== suppressed: 618,225 bytes in 8,232 blocks +==27426== Reachable blocks (those to which a pointer was found) are not shown. +==27426== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==27426== +==27426== For lists of detected and suppressed errors, rerun with: -s +==27426== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestOnLatticeSimulationWithPdes_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOnLatticeSimulationWithPdes_valgrind.txt new file mode 100644 index 000000000..e669f491a --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOnLatticeSimulationWithPdes_valgrind.txt @@ -0,0 +1,73 @@ +==27427== Memcheck, a memory error detector +==27427== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==27427== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==27427== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info +==27427== Parent PID: 24048 +==27427== +==27427== +==27427== FILE DESCRIPTORS: 9 open (3 std) at exit. +==27427== Open file descriptor 12: +==27427== at 0xFC7F07D: pipe (pipe.c:29) +==27427== by 0x196AC07D: ??? +==27427== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27427== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27427== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27427== by 0x10210D38: PetscInitialize (pinit.c:924) +==27427== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27427== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27427== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27427== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27427== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27427== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27427== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27427== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) +==27427== +==27427== Open file descriptor 8: /dev/shm/open_mpi.0000 +==27427== at 0xFC83A1C: __open_nocancel (open64_nocancel.c:39) +==27427== by 0xFC07BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==27427== by 0xF4D4822: ??? +==27427== by 0xF4D496F: ??? +==27427== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27427== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27427== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27427== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27427== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27427== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27427== by 0x10210D38: PetscInitialize (pinit.c:924) +==27427== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27427== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27427== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27427== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27427== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27427== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27427== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27427== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) +==27427== +==27427== Open file descriptor 113: +==27427== +==27427== +==27427== Open file descriptor 110: +==27427== +==27427== +==27427== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt +==27427== +==27427== +==27427== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==27427== +==27427== +==27427== +==27427== HEAP SUMMARY: +==27427== in use at exit: 618,281 bytes in 8,235 blocks +==27427== total heap usage: 2,356,889 allocs, 2,348,654 frees, 1,775,836,028 bytes allocated +==27427== +==27427== LEAK SUMMARY: +==27427== definitely lost: 0 bytes in 0 blocks +==27427== indirectly lost: 0 bytes in 0 blocks +==27427== possibly lost: 0 bytes in 0 blocks +==27427== still reachable: 56 bytes in 3 blocks +==27427== suppressed: 618,225 bytes in 8,232 blocks +==27427== Reachable blocks (those to which a pointer was found) are not shown. +==27427== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==27427== +==27427== For lists of detected and suppressed errors, rerun with: -s +==27427== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..879197d68 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==34290== Memcheck, a memory error detector +==34290== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==34290== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==34290== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==34290== Parent PID: 24048 +==34290== +==34290== +==34290== FILE DESCRIPTORS: 9 open (3 std) at exit. +==34290== Open file descriptor 12: +==34290== at 0xF92407D: pipe (pipe.c:29) +==34290== by 0x196AD07D: ??? +==34290== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==34290== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==34290== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==34290== by 0x10210D38: PetscInitialize (pinit.c:924) +==34290== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==34290== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==34290== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==34290== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==34290== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==34290== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==34290== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==34290== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) +==34290== +==34290== Open file descriptor 8: /dev/shm/open_mpi.0000 +==34290== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==34290== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==34290== by 0xF137822: ??? +==34290== by 0xF13796F: ??? +==34290== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==34290== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==34290== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==34290== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==34290== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==34290== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==34290== by 0x10210D38: PetscInitialize (pinit.c:924) +==34290== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==34290== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==34290== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==34290== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==34290== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==34290== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==34290== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==34290== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) +==34290== +==34290== Open file descriptor 113: +==34290== +==34290== +==34290== Open file descriptor 110: +==34290== +==34290== +==34290== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt +==34290== +==34290== +==34290== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==34290== +==34290== +==34290== +==34290== HEAP SUMMARY: +==34290== in use at exit: 618,297 bytes in 8,236 blocks +==34290== total heap usage: 11,682,199 allocs, 11,673,963 frees, 2,208,182,206 bytes allocated +==34290== +==34290== LEAK SUMMARY: +==34290== definitely lost: 0 bytes in 0 blocks +==34290== indirectly lost: 0 bytes in 0 blocks +==34290== possibly lost: 0 bytes in 0 blocks +==34290== still reachable: 72 bytes in 4 blocks +==34290== suppressed: 618,225 bytes in 8,232 blocks +==34290== Reachable blocks (those to which a pointer was found) are not shown. +==34290== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==34290== +==34290== For lists of detected and suppressed errors, rerun with: -s +==34290== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestOperatorSplittingMonodomainSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOperatorSplittingMonodomainSolver_valgrind.txt new file mode 100644 index 000000000..98576a7da --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOperatorSplittingMonodomainSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43458== Memcheck, a memory error detector +==43458== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43458== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43458== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestOperatorSplittingMonodomainSolver -malloc_debug -malloc_dump -memory_info +==43458== Parent PID: 24048 +==43458== +==43458== +==43458== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43458== Open file descriptor 12: +==43458== at 0xA75007D: pipe (pipe.c:29) +==43458== by 0x1432407D: ??? +==43458== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43458== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43458== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43458== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43458== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43458== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43458== by 0x1199B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43458== by 0x115213: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43458== by 0x1175A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43458== by 0x11749F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43458== by 0x117AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43458== by 0x113A15: main (TestOperatorSplittingMonodomainSolver.cpp:18) +==43458== +==43458== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43458== at 0xA754A1C: __open_nocancel (open64_nocancel.c:39) +==43458== by 0xA6D8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43458== by 0xA072822: ??? +==43458== by 0xA07296F: ??? +==43458== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43458== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43458== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43458== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43458== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43458== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43458== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43458== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43458== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43458== by 0x1199B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43458== by 0x115213: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43458== by 0x1175A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43458== by 0x11749F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43458== by 0x117AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43458== by 0x113A15: main (TestOperatorSplittingMonodomainSolver.cpp:18) +==43458== +==43458== Open file descriptor 113: +==43458== +==43458== +==43458== Open file descriptor 110: +==43458== +==43458== +==43458== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOperatorSplittingMonodomainSolver_valgrind.txt +==43458== +==43458== +==43458== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43458== +==43458== +==43458== +==43458== HEAP SUMMARY: +==43458== in use at exit: 618,818 bytes in 8,248 blocks +==43458== total heap usage: 81,700 allocs, 73,452 frees, 1,494,729,482 bytes allocated +==43458== +==43458== LEAK SUMMARY: +==43458== definitely lost: 0 bytes in 0 blocks +==43458== indirectly lost: 0 bytes in 0 blocks +==43458== possibly lost: 0 bytes in 0 blocks +==43458== still reachable: 24 bytes in 2 blocks +==43458== suppressed: 618,794 bytes in 8,246 blocks +==43458== Reachable blocks (those to which a pointer was found) are not shown. +==43458== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43458== +==43458== For lists of detected and suppressed errors, rerun with: -s +==43458== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2024-09-23_05-40-48/TestOutputDirectoryFifoQueue_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOutputDirectoryFifoQueue_valgrind.txt new file mode 100644 index 000000000..17350aefa --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOutputDirectoryFifoQueue_valgrind.txt @@ -0,0 +1,73 @@ +==24219== Memcheck, a memory error detector +==24219== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24219== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24219== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestOutputDirectoryFifoQueue -malloc_debug -malloc_dump -memory_info +==24219== Parent PID: 24048 +==24219== +==24219== +==24219== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24219== Open file descriptor 12: +==24219== at 0x4CB207D: pipe (pipe.c:29) +==24219== by 0xAEA507D: ??? +==24219== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24219== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24219== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24219== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24219== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24219== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24219== by 0x114118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24219== by 0x10FF93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24219== by 0x1121E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24219== by 0x1120DD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24219== by 0x1126F1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24219== by 0x10E795: main (TestOutputDirectoryFifoQueue.cpp:18) +==24219== +==24219== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24219== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24219== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24219== by 0x4935822: ??? +==24219== by 0x493596F: ??? +==24219== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24219== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24219== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24219== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24219== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24219== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24219== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24219== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24219== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24219== by 0x114118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24219== by 0x10FF93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24219== by 0x1121E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24219== by 0x1120DD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24219== by 0x1126F1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24219== by 0x10E795: main (TestOutputDirectoryFifoQueue.cpp:18) +==24219== +==24219== Open file descriptor 113: +==24219== +==24219== +==24219== Open file descriptor 110: +==24219== +==24219== +==24219== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOutputDirectoryFifoQueue_valgrind.txt +==24219== +==24219== +==24219== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24219== +==24219== +==24219== +==24219== HEAP SUMMARY: +==24219== in use at exit: 617,842 bytes in 8,238 blocks +==24219== total heap usage: 45,612 allocs, 37,374 frees, 1,338,679,164 bytes allocated +==24219== +==24219== LEAK SUMMARY: +==24219== definitely lost: 0 bytes in 0 blocks +==24219== indirectly lost: 0 bytes in 0 blocks +==24219== possibly lost: 0 bytes in 0 blocks +==24219== still reachable: 24 bytes in 2 blocks +==24219== suppressed: 617,818 bytes in 8,236 blocks +==24219== Reachable blocks (those to which a pointer was found) are not shown. +==24219== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24219== +==24219== For lists of detected and suppressed errors, rerun with: -s +==24219== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestOutputFileHandler_valgrind.txt b/log-files/2024-09-23_05-40-48/TestOutputFileHandler_valgrind.txt new file mode 100644 index 000000000..6c1d90dad --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestOutputFileHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24220== Memcheck, a memory error detector +==24220== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24220== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24220== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestOutputFileHandler -malloc_debug -malloc_dump -memory_info +==24220== Parent PID: 24048 +==24220== +==24220== +==24220== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24220== Open file descriptor 12: +==24220== at 0x4CB207D: pipe (pipe.c:29) +==24220== by 0xAEA507D: ??? +==24220== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24220== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24220== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24220== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24220== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24220== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24220== by 0x11718A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24220== by 0x1128AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24220== by 0x11514C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24220== by 0x114FEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24220== by 0x115683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24220== by 0x110CD5: main (TestOutputFileHandler.cpp:19) +==24220== +==24220== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24220== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24220== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24220== by 0x4935822: ??? +==24220== by 0x493596F: ??? +==24220== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24220== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24220== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24220== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24220== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24220== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24220== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24220== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24220== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24220== by 0x11718A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24220== by 0x1128AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24220== by 0x11514C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24220== by 0x114FEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24220== by 0x115683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24220== by 0x110CD5: main (TestOutputFileHandler.cpp:19) +==24220== +==24220== Open file descriptor 113: +==24220== +==24220== +==24220== Open file descriptor 110: +==24220== +==24220== +==24220== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOutputFileHandler_valgrind.txt +==24220== +==24220== +==24220== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24220== +==24220== +==24220== +==24220== HEAP SUMMARY: +==24220== in use at exit: 617,842 bytes in 8,238 blocks +==24220== total heap usage: 46,513 allocs, 38,275 frees, 1,339,256,175 bytes allocated +==24220== +==24220== LEAK SUMMARY: +==24220== definitely lost: 0 bytes in 0 blocks +==24220== indirectly lost: 0 bytes in 0 blocks +==24220== possibly lost: 0 bytes in 0 blocks +==24220== still reachable: 24 bytes in 2 blocks +==24220== suppressed: 617,818 bytes in 8,236 blocks +==24220== Reachable blocks (those to which a pointer was found) are not shown. +==24220== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24220== +==24220== For lists of detected and suppressed errors, rerun with: -s +==24220== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestPCBlockDiagonal_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPCBlockDiagonal_valgrind.txt new file mode 100644 index 000000000..01e3df1fd --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPCBlockDiagonal_valgrind.txt @@ -0,0 +1,73 @@ +==24392== Memcheck, a memory error detector +==24392== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24392== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24392== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCBlockDiagonal -malloc_debug -malloc_dump -memory_info +==24392== Parent PID: 24048 +==24392== +==24392== +==24392== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24392== Open file descriptor 12: +==24392== at 0x60C107D: pipe (pipe.c:29) +==24392== by 0xAF3907D: ??? +==24392== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24392== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24392== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24392== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24392== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24392== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24392== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24392== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24392== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24392== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24392== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24392== by 0x10D995: main (TestPCBlockDiagonal.cpp:18) +==24392== +==24392== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24392== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24392== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24392== by 0x5D42822: ??? +==24392== by 0x5D4296F: ??? +==24392== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24392== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24392== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24392== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24392== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24392== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24392== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24392== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24392== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24392== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24392== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24392== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24392== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24392== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24392== by 0x10D995: main (TestPCBlockDiagonal.cpp:18) +==24392== +==24392== Open file descriptor 113: +==24392== +==24392== +==24392== Open file descriptor 110: +==24392== +==24392== +==24392== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCBlockDiagonal_valgrind.txt +==24392== +==24392== +==24392== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24392== +==24392== +==24392== +==24392== HEAP SUMMARY: +==24392== in use at exit: 617,874 bytes in 8,239 blocks +==24392== total heap usage: 56,334 allocs, 48,095 frees, 1,364,707,531 bytes allocated +==24392== +==24392== LEAK SUMMARY: +==24392== definitely lost: 0 bytes in 0 blocks +==24392== indirectly lost: 0 bytes in 0 blocks +==24392== possibly lost: 0 bytes in 0 blocks +==24392== still reachable: 40 bytes in 3 blocks +==24392== suppressed: 617,834 bytes in 8,236 blocks +==24392== Reachable blocks (those to which a pointer was found) are not shown. +==24392== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24392== +==24392== For lists of detected and suppressed errors, rerun with: -s +==24392== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestPCLDUFactorisation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPCLDUFactorisation_valgrind.txt new file mode 100644 index 000000000..18901aab2 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPCLDUFactorisation_valgrind.txt @@ -0,0 +1,73 @@ +==24395== Memcheck, a memory error detector +==24395== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24395== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24395== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCLDUFactorisation -malloc_debug -malloc_dump -memory_info +==24395== Parent PID: 24048 +==24395== +==24395== +==24395== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24395== Open file descriptor 12: +==24395== at 0x60C107D: pipe (pipe.c:29) +==24395== by 0xAF3907D: ??? +==24395== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24395== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24395== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24395== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24395== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24395== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24395== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24395== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24395== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24395== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24395== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24395== by 0x10D995: main (TestPCLDUFactorisation.cpp:18) +==24395== +==24395== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24395== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24395== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24395== by 0x5D42822: ??? +==24395== by 0x5D4296F: ??? +==24395== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24395== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24395== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24395== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24395== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24395== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24395== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24395== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24395== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24395== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24395== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24395== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24395== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24395== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24395== by 0x10D995: main (TestPCLDUFactorisation.cpp:18) +==24395== +==24395== Open file descriptor 113: +==24395== +==24395== +==24395== Open file descriptor 110: +==24395== +==24395== +==24395== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCLDUFactorisation_valgrind.txt +==24395== +==24395== +==24395== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24395== +==24395== +==24395== +==24395== HEAP SUMMARY: +==24395== in use at exit: 617,874 bytes in 8,239 blocks +==24395== total heap usage: 57,131 allocs, 48,892 frees, 1,365,677,690 bytes allocated +==24395== +==24395== LEAK SUMMARY: +==24395== definitely lost: 0 bytes in 0 blocks +==24395== indirectly lost: 0 bytes in 0 blocks +==24395== possibly lost: 0 bytes in 0 blocks +==24395== still reachable: 40 bytes in 3 blocks +==24395== suppressed: 617,834 bytes in 8,236 blocks +==24395== Reachable blocks (those to which a pointer was found) are not shown. +==24395== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24395== +==24395== For lists of detected and suppressed errors, rerun with: -s +==24395== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestPCTwoLevelsBlockDiagonal_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPCTwoLevelsBlockDiagonal_valgrind.txt new file mode 100644 index 000000000..8aa08de6e --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPCTwoLevelsBlockDiagonal_valgrind.txt @@ -0,0 +1,73 @@ +==24403== Memcheck, a memory error detector +==24403== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24403== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24403== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCTwoLevelsBlockDiagonal -malloc_debug -malloc_dump -memory_info +==24403== Parent PID: 24048 +==24403== +==24403== +==24403== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24403== Open file descriptor 12: +==24403== at 0x60C107D: pipe (pipe.c:29) +==24403== by 0xAF3907D: ??? +==24403== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24403== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24403== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24403== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24403== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24403== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24403== by 0x114A0E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24403== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24403== by 0x1127C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24403== by 0x1126C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24403== by 0x112CD5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24403== by 0x10EA95: main (TestPCTwoLevelsBlockDiagonal.cpp:18) +==24403== +==24403== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24403== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24403== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24403== by 0x5D42822: ??? +==24403== by 0x5D4296F: ??? +==24403== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24403== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24403== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24403== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24403== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24403== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24403== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24403== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24403== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24403== by 0x114A0E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24403== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24403== by 0x1127C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24403== by 0x1126C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24403== by 0x112CD5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24403== by 0x10EA95: main (TestPCTwoLevelsBlockDiagonal.cpp:18) +==24403== +==24403== Open file descriptor 113: +==24403== +==24403== +==24403== Open file descriptor 110: +==24403== +==24403== +==24403== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCTwoLevelsBlockDiagonal_valgrind.txt +==24403== +==24403== +==24403== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24403== +==24403== +==24403== +==24403== HEAP SUMMARY: +==24403== in use at exit: 617,874 bytes in 8,239 blocks +==24403== total heap usage: 76,513 allocs, 68,274 frees, 1,345,540,788 bytes allocated +==24403== +==24403== LEAK SUMMARY: +==24403== definitely lost: 0 bytes in 0 blocks +==24403== indirectly lost: 0 bytes in 0 blocks +==24403== possibly lost: 0 bytes in 0 blocks +==24403== still reachable: 40 bytes in 3 blocks +==24403== suppressed: 617,834 bytes in 8,236 blocks +==24403== Reachable blocks (those to which a pointer was found) are not shown. +==24403== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24403== +==24403== For lists of detected and suppressed errors, rerun with: -s +==24403== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestPapillaryFibreCalculator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPapillaryFibreCalculator_valgrind.txt new file mode 100644 index 000000000..cacb538b2 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPapillaryFibreCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==41375== Memcheck, a memory error detector +==41375== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41375== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41375== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPapillaryFibreCalculator -malloc_debug -malloc_dump -memory_info +==41375== Parent PID: 24048 +==41375== +==41375== +==41375== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41375== Open file descriptor 113: +==41375== +==41375== +==41375== Open file descriptor 110: +==41375== +==41375== +==41375== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPapillaryFibreCalculator_valgrind.txt +==41375== +==41375== +==41375== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41375== +==41375== +==41375== +==41375== HEAP SUMMARY: +==41375== in use at exit: 24 bytes in 2 blocks +==41375== total heap usage: 7,291 allocs, 7,289 frees, 1,074,344 bytes allocated +==41375== +==41375== LEAK SUMMARY: +==41375== definitely lost: 0 bytes in 0 blocks +==41375== indirectly lost: 0 bytes in 0 blocks +==41375== possibly lost: 0 bytes in 0 blocks +==41375== still reachable: 24 bytes in 2 blocks +==41375== suppressed: 0 bytes in 0 blocks +==41375== Reachable blocks (those to which a pointer was found) are not shown. +==41375== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41375== +==41375== For lists of detected and suppressed errors, rerun with: -s +==41375== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-23_05-40-48/TestParabolicBoxDomainPdeModifier_valgrind.txt b/log-files/2024-09-23_05-40-48/TestParabolicBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..eccf90db8 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestParabolicBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25594== Memcheck, a memory error detector +==25594== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25594== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25594== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParabolicBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25594== Parent PID: 24048 +==25594== +==25594== +==25594== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25594== Open file descriptor 12: +==25594== at 0x1108F07D: pipe (pipe.c:29) +==25594== by 0x196AC07D: ??? +==25594== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25594== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25594== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25594== by 0xF627D38: PetscInitialize (pinit.c:924) +==25594== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25594== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25594== by 0x133C67: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25594== by 0x12E57D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25594== by 0x13121C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25594== by 0x1310BC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25594== by 0x131753: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25594== by 0x12C9A5: main (TestParabolicBoxDomainPdeModifier.cpp:19) +==25594== +==25594== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25594== at 0x11093A1C: __open_nocancel (open64_nocancel.c:39) +==25594== by 0x11017BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25594== by 0xF4D4822: ??? +==25594== by 0xF4D496F: ??? +==25594== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25594== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25594== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25594== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25594== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25594== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25594== by 0xF627D38: PetscInitialize (pinit.c:924) +==25594== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25594== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25594== by 0x133C67: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25594== by 0x12E57D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25594== by 0x13121C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25594== by 0x1310BC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25594== by 0x131753: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25594== by 0x12C9A5: main (TestParabolicBoxDomainPdeModifier.cpp:19) +==25594== +==25594== Open file descriptor 113: +==25594== +==25594== +==25594== Open file descriptor 110: +==25594== +==25594== +==25594== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParabolicBoxDomainPdeModifier_valgrind.txt +==25594== +==25594== +==25594== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25594== +==25594== +==25594== +==25594== HEAP SUMMARY: +==25594== in use at exit: 618,281 bytes in 8,235 blocks +==25594== total heap usage: 2,607,146 allocs, 2,598,911 frees, 1,618,355,495 bytes allocated +==25594== +==25594== LEAK SUMMARY: +==25594== definitely lost: 0 bytes in 0 blocks +==25594== indirectly lost: 0 bytes in 0 blocks +==25594== possibly lost: 0 bytes in 0 blocks +==25594== still reachable: 56 bytes in 3 blocks +==25594== suppressed: 618,225 bytes in 8,232 blocks +==25594== Reachable blocks (those to which a pointer was found) are not shown. +==25594== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25594== +==25594== For lists of detected and suppressed errors, rerun with: -s +==25594== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestParabolicGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-09-23_05-40-48/TestParabolicGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..2bb622a9e --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestParabolicGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25612== Memcheck, a memory error detector +==25612== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25612== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25612== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParabolicGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25612== Parent PID: 24048 +==25612== +==25612== +==25612== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25612== Open file descriptor 12: +==25612== at 0x1117607D: pipe (pipe.c:29) +==25612== by 0x196AC07D: ??? +==25612== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25612== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25612== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25612== by 0xF627D38: PetscInitialize (pinit.c:924) +==25612== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25612== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25612== by 0x1396A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25612== by 0x13395D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25612== by 0x136826: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25612== by 0x1366C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25612== by 0x136D5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25612== by 0x131D85: main (TestParabolicGrowingDomainPdeModifier.cpp:19) +==25612== +==25612== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25612== at 0x1117AA1C: __open_nocancel (open64_nocancel.c:39) +==25612== by 0x110FEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25612== by 0xF4D4822: ??? +==25612== by 0xF4D496F: ??? +==25612== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25612== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25612== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25612== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25612== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25612== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25612== by 0xF627D38: PetscInitialize (pinit.c:924) +==25612== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25612== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25612== by 0x1396A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25612== by 0x13395D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25612== by 0x136826: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25612== by 0x1366C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25612== by 0x136D5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25612== by 0x131D85: main (TestParabolicGrowingDomainPdeModifier.cpp:19) +==25612== +==25612== Open file descriptor 113: +==25612== +==25612== +==25612== Open file descriptor 110: +==25612== +==25612== +==25612== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParabolicGrowingDomainPdeModifier_valgrind.txt +==25612== +==25612== +==25612== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25612== +==25612== +==25612== +==25612== HEAP SUMMARY: +==25612== in use at exit: 618,281 bytes in 8,235 blocks +==25612== total heap usage: 7,057,263 allocs, 7,049,028 frees, 1,809,463,583 bytes allocated +==25612== +==25612== LEAK SUMMARY: +==25612== definitely lost: 0 bytes in 0 blocks +==25612== indirectly lost: 0 bytes in 0 blocks +==25612== possibly lost: 0 bytes in 0 blocks +==25612== still reachable: 56 bytes in 3 blocks +==25612== suppressed: 618,225 bytes in 8,232 blocks +==25612== Reachable blocks (those to which a pointer was found) are not shown. +==25612== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25612== +==25612== For lists of detected and suppressed errors, rerun with: -s +==25612== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestParallelCellsGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestParallelCellsGenerator_valgrind.txt new file mode 100644 index 000000000..47038449a --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestParallelCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==25527== Memcheck, a memory error detector +==25527== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25527== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25527== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParallelCellsGenerator -malloc_debug -malloc_dump -memory_info +==25527== Parent PID: 24048 +==25527== +==25527== +==25527== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25527== Open file descriptor 12: +==25527== at 0x10CB007D: pipe (pipe.c:29) +==25527== by 0x196AD07D: ??? +==25527== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25527== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25527== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25527== by 0xF225D38: PetscInitialize (pinit.c:924) +==25527== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25527== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25527== by 0x123D94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25527== by 0x11ED1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25527== by 0x1216E0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25527== by 0x121580: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25527== by 0x121C17: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25527== by 0x11D0F5: main (TestParallelCellsGenerator.cpp:19) +==25527== +==25527== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25527== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==25527== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25527== by 0x104B5822: ??? +==25527== by 0x104B596F: ??? +==25527== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25527== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25527== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25527== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25527== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25527== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25527== by 0xF225D38: PetscInitialize (pinit.c:924) +==25527== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25527== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25527== by 0x123D94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25527== by 0x11ED1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25527== by 0x1216E0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25527== by 0x121580: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25527== by 0x121C17: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25527== by 0x11D0F5: main (TestParallelCellsGenerator.cpp:19) +==25527== +==25527== Open file descriptor 113: +==25527== +==25527== +==25527== Open file descriptor 110: +==25527== +==25527== +==25527== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelCellsGenerator_valgrind.txt +==25527== +==25527== +==25527== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25527== +==25527== +==25527== +==25527== HEAP SUMMARY: +==25527== in use at exit: 618,418 bytes in 8,240 blocks +==25527== total heap usage: 54,340 allocs, 46,100 frees, 1,339,091,359 bytes allocated +==25527== +==25527== LEAK SUMMARY: +==25527== definitely lost: 0 bytes in 0 blocks +==25527== indirectly lost: 0 bytes in 0 blocks +==25527== possibly lost: 0 bytes in 0 blocks +==25527== still reachable: 120 bytes in 4 blocks +==25527== suppressed: 618,298 bytes in 8,236 blocks +==25527== Reachable blocks (those to which a pointer was found) are not shown. +==25527== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25527== +==25527== For lists of detected and suppressed errors, rerun with: -s +==25527== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestParallelColumnDataReaderWriter_valgrind.txt b/log-files/2024-09-23_05-40-48/TestParallelColumnDataReaderWriter_valgrind.txt new file mode 100644 index 000000000..5cb691de1 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestParallelColumnDataReaderWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24324== Memcheck, a memory error detector +==24324== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24324== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24324== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestParallelColumnDataReaderWriter -malloc_debug -malloc_dump -memory_info +==24324== Parent PID: 24048 +==24324== +==24324== +==24324== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24324== Open file descriptor 12: +==24324== at 0x60A507D: pipe (pipe.c:29) +==24324== by 0xAF1807D: ??? +==24324== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24324== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24324== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24324== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24324== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24324== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24324== by 0x11B354: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24324== by 0x114A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24324== by 0x1174D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24324== by 0x117378: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24324== by 0x117A0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24324== by 0x112E75: main (TestParallelColumnDataReaderWriter.cpp:19) +==24324== +==24324== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24324== at 0x60A9A1C: __open_nocancel (open64_nocancel.c:39) +==24324== by 0x602DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24324== by 0x5D26822: ??? +==24324== by 0x5D2696F: ??? +==24324== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24324== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24324== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24324== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24324== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24324== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24324== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24324== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24324== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24324== by 0x11B354: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24324== by 0x114A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24324== by 0x1174D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24324== by 0x117378: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24324== by 0x117A0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24324== by 0x112E75: main (TestParallelColumnDataReaderWriter.cpp:19) +==24324== +==24324== Open file descriptor 113: +==24324== +==24324== +==24324== Open file descriptor 110: +==24324== +==24324== +==24324== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelColumnDataReaderWriter_valgrind.txt +==24324== +==24324== +==24324== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24324== +==24324== +==24324== +==24324== HEAP SUMMARY: +==24324== in use at exit: 617,858 bytes in 8,238 blocks +==24324== total heap usage: 46,058 allocs, 37,820 frees, 1,338,789,257 bytes allocated +==24324== +==24324== LEAK SUMMARY: +==24324== definitely lost: 0 bytes in 0 blocks +==24324== indirectly lost: 0 bytes in 0 blocks +==24324== possibly lost: 0 bytes in 0 blocks +==24324== still reachable: 24 bytes in 2 blocks +==24324== suppressed: 617,834 bytes in 8,236 blocks +==24324== Reachable blocks (those to which a pointer was found) are not shown. +==24324== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24324== +==24324== For lists of detected and suppressed errors, rerun with: -s +==24324== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestParallelWriterPerformance_valgrind.txt b/log-files/2024-09-23_05-40-48/TestParallelWriterPerformance_valgrind.txt new file mode 100644 index 000000000..854b40ce4 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestParallelWriterPerformance_valgrind.txt @@ -0,0 +1,73 @@ +==24331== Memcheck, a memory error detector +==24331== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24331== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24331== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestParallelWriterPerformance -malloc_debug -malloc_dump -memory_info +==24331== Parent PID: 24048 +==24331== +==24331== +==24331== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24331== Open file descriptor 12: +==24331== at 0x60A507D: pipe (pipe.c:29) +==24331== by 0xAF1807D: ??? +==24331== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24331== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24331== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24331== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24331== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24331== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24331== by 0x11316C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24331== by 0x10F013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24331== by 0x111202: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24331== by 0x1110FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24331== by 0x111711: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24331== by 0x10D815: main (TestParallelWriterPerformance.cpp:18) +==24331== +==24331== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24331== at 0x60A9A1C: __open_nocancel (open64_nocancel.c:39) +==24331== by 0x602DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24331== by 0x5D26822: ??? +==24331== by 0x5D2696F: ??? +==24331== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24331== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24331== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24331== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24331== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24331== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24331== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24331== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24331== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24331== by 0x11316C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24331== by 0x10F013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24331== by 0x111202: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24331== by 0x1110FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24331== by 0x111711: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24331== by 0x10D815: main (TestParallelWriterPerformance.cpp:18) +==24331== +==24331== Open file descriptor 113: +==24331== +==24331== +==24331== Open file descriptor 110: +==24331== +==24331== +==24331== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelWriterPerformance_valgrind.txt +==24331== +==24331== +==24331== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24331== +==24331== +==24331== +==24331== HEAP SUMMARY: +==24331== in use at exit: 617,858 bytes in 8,238 blocks +==24331== total heap usage: 45,428 allocs, 37,190 frees, 1,338,449,036 bytes allocated +==24331== +==24331== LEAK SUMMARY: +==24331== definitely lost: 0 bytes in 0 blocks +==24331== indirectly lost: 0 bytes in 0 blocks +==24331== possibly lost: 0 bytes in 0 blocks +==24331== still reachable: 24 bytes in 2 blocks +==24331== suppressed: 617,834 bytes in 8,236 blocks +==24331== Reachable blocks (those to which a pointer was found) are not shown. +==24331== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24331== +==24331== For lists of detected and suppressed errors, rerun with: -s +==24331== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestPdeSimulationTime_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPdeSimulationTime_valgrind.txt new file mode 100644 index 000000000..38ffafb96 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPdeSimulationTime_valgrind.txt @@ -0,0 +1,73 @@ +==25305== Memcheck, a memory error detector +==25305== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25305== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25305== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestPdeSimulationTime -malloc_debug -malloc_dump -memory_info +==25305== Parent PID: 24048 +==25305== +==25305== +==25305== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25305== Open file descriptor 12: +==25305== at 0x505107D: pipe (pipe.c:29) +==25305== by 0x104D507D: ??? +==25305== by 0xC31D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25305== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25305== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25305== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25305== by 0x4C971D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25305== by 0x4C97227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25305== by 0x111E6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25305== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25305== by 0x10FF34: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25305== by 0x10FE2F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25305== by 0x110443: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25305== by 0x10C415: main (TestPdeSimulationTime.cpp:18) +==25305== +==25305== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25305== at 0x5055A1C: __open_nocancel (open64_nocancel.c:39) +==25305== by 0x4FD9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25305== by 0x4CD2822: ??? +==25305== by 0x4CD296F: ??? +==25305== by 0xC3C26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25305== by 0xC3C2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25305== by 0xC378922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25305== by 0xC31D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25305== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25305== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25305== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25305== by 0x4C971D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25305== by 0x4C97227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25305== by 0x111E6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25305== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25305== by 0x10FF34: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25305== by 0x10FE2F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25305== by 0x110443: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25305== by 0x10C415: main (TestPdeSimulationTime.cpp:18) +==25305== +==25305== Open file descriptor 113: +==25305== +==25305== +==25305== Open file descriptor 110: +==25305== +==25305== +==25305== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPdeSimulationTime_valgrind.txt +==25305== +==25305== +==25305== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25305== +==25305== +==25305== +==25305== HEAP SUMMARY: +==25305== in use at exit: 618,258 bytes in 8,238 blocks +==25305== total heap usage: 47,332 allocs, 39,094 frees, 1,338,384,604 bytes allocated +==25305== +==25305== LEAK SUMMARY: +==25305== definitely lost: 0 bytes in 0 blocks +==25305== indirectly lost: 0 bytes in 0 blocks +==25305== possibly lost: 0 bytes in 0 blocks +==25305== still reachable: 24 bytes in 2 blocks +==25305== suppressed: 618,234 bytes in 8,236 blocks +==25305== Reachable blocks (those to which a pointer was found) are not shown. +==25305== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25305== +==25305== For lists of detected and suppressed errors, rerun with: -s +==25305== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestPdeTestClasses_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPdeTestClasses_valgrind.txt new file mode 100644 index 000000000..15d58e6d4 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPdeTestClasses_valgrind.txt @@ -0,0 +1,73 @@ +==25075== Memcheck, a memory error detector +==25075== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25075== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25075== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestPdeTestClasses -malloc_debug -malloc_dump -memory_info +==25075== Parent PID: 24048 +==25075== +==25075== +==25075== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25075== Open file descriptor 12: +==25075== at 0x6A3807D: pipe (pipe.c:29) +==25075== by 0x100C307D: ??? +==25075== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25075== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25075== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25075== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==25075== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25075== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25075== by 0x13051E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25075== by 0x12BAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25075== by 0x12E0E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25075== by 0x12DFE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25075== by 0x12E5F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25075== by 0x12A2F5: main (TestPdeTestClasses.cpp:18) +==25075== +==25075== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25075== at 0x6A3CA1C: __open_nocancel (open64_nocancel.c:39) +==25075== by 0x69C0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25075== by 0x6590822: ??? +==25075== by 0x659096F: ??? +==25075== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25075== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25075== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25075== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25075== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25075== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25075== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==25075== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25075== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25075== by 0x13051E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25075== by 0x12BAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25075== by 0x12E0E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25075== by 0x12DFE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25075== by 0x12E5F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25075== by 0x12A2F5: main (TestPdeTestClasses.cpp:18) +==25075== +==25075== Open file descriptor 113: +==25075== +==25075== +==25075== Open file descriptor 110: +==25075== +==25075== +==25075== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPdeTestClasses_valgrind.txt +==25075== +==25075== +==25075== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25075== +==25075== +==25075== +==25075== HEAP SUMMARY: +==25075== in use at exit: 618,226 bytes in 8,238 blocks +==25075== total heap usage: 47,537 allocs, 39,299 frees, 1,338,442,229 bytes allocated +==25075== +==25075== LEAK SUMMARY: +==25075== definitely lost: 0 bytes in 0 blocks +==25075== indirectly lost: 0 bytes in 0 blocks +==25075== possibly lost: 0 bytes in 0 blocks +==25075== still reachable: 24 bytes in 2 blocks +==25075== suppressed: 618,202 bytes in 8,236 blocks +==25075== Reachable blocks (those to which a pointer was found) are not shown. +==25075== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25075== +==25075== For lists of detected and suppressed errors, rerun with: -s +==25075== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestPerElementWriter_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPerElementWriter_valgrind.txt new file mode 100644 index 000000000..e2401b959 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPerElementWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24707== Memcheck, a memory error detector +==24707== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24707== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24707== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestPerElementWriter -malloc_debug -malloc_dump -memory_info +==24707== Parent PID: 24048 +==24707== +==24707== +==24707== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24707== Open file descriptor 12: +==24707== at 0x810907D: pipe (pipe.c:29) +==24707== by 0x100C307D: ??? +==24707== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24707== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24707== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24707== by 0x667ED38: PetscInitialize (pinit.c:924) +==24707== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24707== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24707== by 0x118F70: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24707== by 0x113759: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24707== by 0x115E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24707== by 0x115D21: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24707== by 0x116335: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24707== by 0x111E15: main (TestPerElementWriter.cpp:18) +==24707== +==24707== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24707== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24707== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24707== by 0x790E822: ??? +==24707== by 0x790E96F: ??? +==24707== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24707== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24707== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24707== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24707== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24707== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24707== by 0x667ED38: PetscInitialize (pinit.c:924) +==24707== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24707== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24707== by 0x118F70: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24707== by 0x113759: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24707== by 0x115E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24707== by 0x115D21: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24707== by 0x116335: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24707== by 0x111E15: main (TestPerElementWriter.cpp:18) +==24707== +==24707== Open file descriptor 113: +==24707== +==24707== +==24707== Open file descriptor 110: +==24707== +==24707== +==24707== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPerElementWriter_valgrind.txt +==24707== +==24707== +==24707== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24707== +==24707== +==24707== +==24707== HEAP SUMMARY: +==24707== in use at exit: 618,226 bytes in 8,238 blocks +==24707== total heap usage: 52,932 allocs, 44,694 frees, 1,338,983,725 bytes allocated +==24707== +==24707== LEAK SUMMARY: +==24707== definitely lost: 0 bytes in 0 blocks +==24707== indirectly lost: 0 bytes in 0 blocks +==24707== possibly lost: 0 bytes in 0 blocks +==24707== still reachable: 24 bytes in 2 blocks +==24707== suppressed: 618,202 bytes in 8,236 blocks +==24707== Reachable blocks (those to which a pointer was found) are not shown. +==24707== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24707== +==24707== For lists of detected and suppressed errors, rerun with: -s +==24707== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt new file mode 100644 index 000000000..4af8be567 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt @@ -0,0 +1,73 @@ +==26203== Memcheck, a memory error detector +==26203== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26203== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26203== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPeriodicNodeBasedCellPopulationParallelMethods -malloc_debug -malloc_dump -memory_info +==26203== Parent PID: 24048 +==26203== +==26203== +==26203== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26203== Open file descriptor 12: +==26203== at 0xF8E007D: pipe (pipe.c:29) +==26203== by 0x196AD07D: ??? +==26203== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26203== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26203== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26203== by 0x10210D38: PetscInitialize (pinit.c:924) +==26203== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26203== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26203== by 0x12B4BA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26203== by 0x1266B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26203== by 0x128CBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26203== by 0x128BBA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26203== by 0x1291CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26203== by 0x124EB5: main (TestPeriodicNodeBasedCellPopulationParallelMethods.cpp:18) +==26203== +==26203== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26203== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==26203== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26203== by 0xF137822: ??? +==26203== by 0xF13796F: ??? +==26203== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26203== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26203== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26203== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26203== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26203== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26203== by 0x10210D38: PetscInitialize (pinit.c:924) +==26203== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26203== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26203== by 0x12B4BA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26203== by 0x1266B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26203== by 0x128CBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26203== by 0x128BBA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26203== by 0x1291CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26203== by 0x124EB5: main (TestPeriodicNodeBasedCellPopulationParallelMethods.cpp:18) +==26203== +==26203== Open file descriptor 113: +==26203== +==26203== +==26203== Open file descriptor 110: +==26203== +==26203== +==26203== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt +==26203== +==26203== +==26203== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26203== +==26203== +==26203== +==26203== HEAP SUMMARY: +==26203== in use at exit: 618,354 bytes in 8,239 blocks +==26203== total heap usage: 53,077 allocs, 44,838 frees, 1,338,902,247 bytes allocated +==26203== +==26203== LEAK SUMMARY: +==26203== definitely lost: 0 bytes in 0 blocks +==26203== indirectly lost: 0 bytes in 0 blocks +==26203== possibly lost: 0 bytes in 0 blocks +==26203== still reachable: 56 bytes in 3 blocks +==26203== suppressed: 618,298 bytes in 8,236 blocks +==26203== Reachable blocks (those to which a pointer was found) are not shown. +==26203== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26203== +==26203== For lists of detected and suppressed errors, rerun with: -s +==26203== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestPeriodicNodesOnlyMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPeriodicNodesOnlyMesh_valgrind.txt new file mode 100644 index 000000000..48eb15817 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPeriodicNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24629== Memcheck, a memory error detector +==24629== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24629== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24629== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestPeriodicNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==24629== Parent PID: 24048 +==24629== +==24629== +==24629== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24629== Open file descriptor 12: +==24629== at 0x6D7D07D: pipe (pipe.c:29) +==24629== by 0x100C507D: ??? +==24629== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24629== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24629== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24629== by 0x7017D38: PetscInitialize (pinit.c:924) +==24629== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24629== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24629== by 0x1300A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24629== by 0x12AC9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24629== by 0x12DA8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24629== by 0x12D92C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24629== by 0x12DFC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24629== by 0x1290C5: main (TestPeriodicNodesOnlyMesh.cpp:19) +==24629== +==24629== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24629== at 0x6D81A1C: __open_nocancel (open64_nocancel.c:39) +==24629== by 0x6D05BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24629== by 0x6590822: ??? +==24629== by 0x659096F: ??? +==24629== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24629== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24629== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24629== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24629== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24629== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24629== by 0x7017D38: PetscInitialize (pinit.c:924) +==24629== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24629== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24629== by 0x1300A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24629== by 0x12AC9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24629== by 0x12DA8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24629== by 0x12D92C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24629== by 0x12DFC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24629== by 0x1290C5: main (TestPeriodicNodesOnlyMesh.cpp:19) +==24629== +==24629== Open file descriptor 113: +==24629== +==24629== +==24629== Open file descriptor 110: +==24629== +==24629== +==24629== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPeriodicNodesOnlyMesh_valgrind.txt +==24629== +==24629== +==24629== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24629== +==24629== +==24629== +==24629== HEAP SUMMARY: +==24629== in use at exit: 618,226 bytes in 8,238 blocks +==24629== total heap usage: 57,943 allocs, 49,705 frees, 1,341,005,172 bytes allocated +==24629== +==24629== LEAK SUMMARY: +==24629== definitely lost: 0 bytes in 0 blocks +==24629== indirectly lost: 0 bytes in 0 blocks +==24629== possibly lost: 0 bytes in 0 blocks +==24629== still reachable: 24 bytes in 2 blocks +==24629== suppressed: 618,202 bytes in 8,236 blocks +==24629== Reachable blocks (those to which a pointer was found) are not shown. +==24629== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24629== +==24629== For lists of detected and suppressed errors, rerun with: -s +==24629== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestPetscEvents_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPetscEvents_valgrind.txt new file mode 100644 index 000000000..25298f4f6 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPetscEvents_valgrind.txt @@ -0,0 +1,73 @@ +==24221== Memcheck, a memory error detector +==24221== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24221== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24221== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscEvents -malloc_debug -malloc_dump -memory_info +==24221== Parent PID: 24048 +==24221== +==24221== +==24221== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24221== Open file descriptor 12: +==24221== at 0x603207D: pipe (pipe.c:29) +==24221== by 0xAEA507D: ??? +==24221== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24221== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24221== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24221== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24221== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24221== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24221== by 0x110C5A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24221== by 0x10CB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24221== by 0x10ED24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24221== by 0x10EC20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24221== by 0x10F233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24221== by 0x10B375: main (TestPetscEvents.cpp:18) +==24221== +==24221== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24221== at 0x6036A1C: __open_nocancel (open64_nocancel.c:39) +==24221== by 0x5FBABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24221== by 0x5CB3822: ??? +==24221== by 0x5CB396F: ??? +==24221== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24221== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24221== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24221== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24221== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24221== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24221== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24221== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24221== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24221== by 0x110C5A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24221== by 0x10CB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24221== by 0x10ED24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24221== by 0x10EC20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24221== by 0x10F233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24221== by 0x10B375: main (TestPetscEvents.cpp:18) +==24221== +==24221== Open file descriptor 113: +==24221== +==24221== +==24221== Open file descriptor 110: +==24221== +==24221== +==24221== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscEvents_valgrind.txt +==24221== +==24221== +==24221== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24221== +==24221== +==24221== +==24221== HEAP SUMMARY: +==24221== in use at exit: 617,842 bytes in 8,238 blocks +==24221== total heap usage: 44,912 allocs, 36,674 frees, 1,338,159,337 bytes allocated +==24221== +==24221== LEAK SUMMARY: +==24221== definitely lost: 0 bytes in 0 blocks +==24221== indirectly lost: 0 bytes in 0 blocks +==24221== possibly lost: 0 bytes in 0 blocks +==24221== still reachable: 24 bytes in 2 blocks +==24221== suppressed: 617,818 bytes in 8,236 blocks +==24221== Reachable blocks (those to which a pointer was found) are not shown. +==24221== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24221== +==24221== For lists of detected and suppressed errors, rerun with: -s +==24221== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestPetscMatTools_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPetscMatTools_valgrind.txt new file mode 100644 index 000000000..5e017afdf --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPetscMatTools_valgrind.txt @@ -0,0 +1,73 @@ +==24380== Memcheck, a memory error detector +==24380== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24380== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24380== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPetscMatTools -malloc_debug -malloc_dump -memory_info +==24380== Parent PID: 24048 +==24380== +==24380== +==24380== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24380== Open file descriptor 12: +==24380== at 0x60C107D: pipe (pipe.c:29) +==24380== by 0xAF3907D: ??? +==24380== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24380== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24380== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24380== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24380== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24380== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24380== by 0x114148: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24380== by 0x10FD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24380== by 0x1121C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24380== by 0x1120BF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24380== by 0x1126D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24380== by 0x10E555: main (TestPetscMatTools.cpp:18) +==24380== +==24380== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24380== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24380== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24380== by 0x5D42822: ??? +==24380== by 0x5D4296F: ??? +==24380== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24380== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24380== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24380== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24380== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24380== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24380== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24380== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24380== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24380== by 0x114148: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24380== by 0x10FD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24380== by 0x1121C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24380== by 0x1120BF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24380== by 0x1126D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24380== by 0x10E555: main (TestPetscMatTools.cpp:18) +==24380== +==24380== Open file descriptor 113: +==24380== +==24380== +==24380== Open file descriptor 110: +==24380== +==24380== +==24380== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscMatTools_valgrind.txt +==24380== +==24380== +==24380== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24380== +==24380== +==24380== +==24380== HEAP SUMMARY: +==24380== in use at exit: 617,858 bytes in 8,238 blocks +==24380== total heap usage: 46,919 allocs, 38,681 frees, 1,338,408,318 bytes allocated +==24380== +==24380== LEAK SUMMARY: +==24380== definitely lost: 0 bytes in 0 blocks +==24380== indirectly lost: 0 bytes in 0 blocks +==24380== possibly lost: 0 bytes in 0 blocks +==24380== still reachable: 24 bytes in 2 blocks +==24380== suppressed: 617,834 bytes in 8,236 blocks +==24380== Reachable blocks (those to which a pointer was found) are not shown. +==24380== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24380== +==24380== For lists of detected and suppressed errors, rerun with: -s +==24380== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestPetscSetup_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPetscSetup_valgrind.txt new file mode 100644 index 000000000..8e0783baf --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPetscSetup_valgrind.txt @@ -0,0 +1,73 @@ +==24243== Memcheck, a memory error detector +==24243== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24243== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24243== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscSetup -malloc_debug -malloc_dump -memory_info +==24243== Parent PID: 24048 +==24243== +==24243== +==24243== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24243== Open file descriptor 12: +==24243== at 0x603207D: pipe (pipe.c:29) +==24243== by 0xAEA507D: ??? +==24243== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24243== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24243== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24243== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24243== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24243== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24243== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24243== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24243== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24243== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24243== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24243== by 0x10D8B5: main (TestPetscSetup.cpp:19) +==24243== +==24243== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24243== at 0x6036A1C: __open_nocancel (open64_nocancel.c:39) +==24243== by 0x5FBABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24243== by 0x5CB3822: ??? +==24243== by 0x5CB396F: ??? +==24243== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24243== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24243== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24243== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24243== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24243== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24243== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24243== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24243== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24243== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24243== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24243== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24243== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24243== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24243== by 0x10D8B5: main (TestPetscSetup.cpp:19) +==24243== +==24243== Open file descriptor 113: +==24243== +==24243== +==24243== Open file descriptor 110: +==24243== +==24243== +==24243== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscSetup_valgrind.txt +==24243== +==24243== +==24243== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24243== +==24243== +==24243== +==24243== HEAP SUMMARY: +==24243== in use at exit: 617,842 bytes in 8,238 blocks +==24243== total heap usage: 45,266 allocs, 37,028 frees, 1,338,216,794 bytes allocated +==24243== +==24243== LEAK SUMMARY: +==24243== definitely lost: 0 bytes in 0 blocks +==24243== indirectly lost: 0 bytes in 0 blocks +==24243== possibly lost: 0 bytes in 0 blocks +==24243== still reachable: 24 bytes in 2 blocks +==24243== suppressed: 617,818 bytes in 8,236 blocks +==24243== Reachable blocks (those to which a pointer was found) are not shown. +==24243== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24243== +==24243== For lists of detected and suppressed errors, rerun with: -s +==24243== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestPetscTools2_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPetscTools2_valgrind.txt new file mode 100644 index 000000000..54d27b8f9 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPetscTools2_valgrind.txt @@ -0,0 +1,36 @@ +==24245== Memcheck, a memory error detector +==24245== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24245== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24245== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscTools2 -malloc_debug -malloc_dump -memory_info +==24245== Parent PID: 24048 +==24245== +==24245== +==24245== FILE DESCRIPTORS: 7 open (3 std) at exit. +==24245== Open file descriptor 113: +==24245== +==24245== +==24245== Open file descriptor 110: +==24245== +==24245== +==24245== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscTools2_valgrind.txt +==24245== +==24245== +==24245== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24245== +==24245== +==24245== +==24245== HEAP SUMMARY: +==24245== in use at exit: 24 bytes in 2 blocks +==24245== total heap usage: 3,070 allocs, 3,068 frees, 350,749 bytes allocated +==24245== +==24245== LEAK SUMMARY: +==24245== definitely lost: 0 bytes in 0 blocks +==24245== indirectly lost: 0 bytes in 0 blocks +==24245== possibly lost: 0 bytes in 0 blocks +==24245== still reachable: 24 bytes in 2 blocks +==24245== suppressed: 0 bytes in 0 blocks +==24245== Reachable blocks (those to which a pointer was found) are not shown. +==24245== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24245== +==24245== For lists of detected and suppressed errors, rerun with: -s +==24245== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-23_05-40-48/TestPetscTools_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPetscTools_valgrind.txt new file mode 100644 index 000000000..a4937b0bd --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPetscTools_valgrind.txt @@ -0,0 +1,73 @@ +==24244== Memcheck, a memory error detector +==24244== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24244== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24244== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscTools -malloc_debug -malloc_dump -memory_info +==24244== Parent PID: 24048 +==24244== +==24244== +==24244== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24244== Open file descriptor 12: +==24244== at 0x616907D: pipe (pipe.c:29) +==24244== by 0xAEA507D: ??? +==24244== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24244== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24244== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24244== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24244== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24244== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24244== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24244== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24244== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24244== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24244== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24244== by 0x110FB5: main (TestPetscTools.cpp:19) +==24244== +==24244== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24244== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24244== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24244== by 0x5CB3822: ??? +==24244== by 0x5CB396F: ??? +==24244== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24244== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24244== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24244== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24244== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24244== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24244== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24244== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24244== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24244== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24244== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24244== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24244== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24244== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24244== by 0x110FB5: main (TestPetscTools.cpp:19) +==24244== +==24244== Open file descriptor 113: +==24244== +==24244== +==24244== Open file descriptor 110: +==24244== +==24244== +==24244== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscTools_valgrind.txt +==24244== +==24244== +==24244== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24244== +==24244== +==24244== +==24244== HEAP SUMMARY: +==24244== in use at exit: 617,842 bytes in 8,238 blocks +==24244== total heap usage: 47,880 allocs, 39,642 frees, 1,338,866,141 bytes allocated +==24244== +==24244== LEAK SUMMARY: +==24244== definitely lost: 0 bytes in 0 blocks +==24244== indirectly lost: 0 bytes in 0 blocks +==24244== possibly lost: 0 bytes in 0 blocks +==24244== still reachable: 24 bytes in 2 blocks +==24244== suppressed: 617,818 bytes in 8,236 blocks +==24244== Reachable blocks (those to which a pointer was found) are not shown. +==24244== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24244== +==24244== For lists of detected and suppressed errors, rerun with: -s +==24244== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestPetscVecTools_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPetscVecTools_valgrind.txt new file mode 100644 index 000000000..649348662 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPetscVecTools_valgrind.txt @@ -0,0 +1,73 @@ +==24381== Memcheck, a memory error detector +==24381== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24381== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24381== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPetscVecTools -malloc_debug -malloc_dump -memory_info +==24381== Parent PID: 24048 +==24381== +==24381== +==24381== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24381== Open file descriptor 12: +==24381== at 0x60C107D: pipe (pipe.c:29) +==24381== by 0xAF3907D: ??? +==24381== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24381== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24381== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24381== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24381== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24381== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24381== by 0x1121EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24381== by 0x10DD73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24381== by 0x11016A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24381== by 0x110065: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24381== by 0x110679: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24381== by 0x10C575: main (TestPetscVecTools.cpp:18) +==24381== +==24381== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24381== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24381== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24381== by 0x5D42822: ??? +==24381== by 0x5D4296F: ??? +==24381== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24381== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24381== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24381== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24381== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24381== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24381== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24381== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24381== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24381== by 0x1121EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24381== by 0x10DD73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24381== by 0x11016A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24381== by 0x110065: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24381== by 0x110679: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24381== by 0x10C575: main (TestPetscVecTools.cpp:18) +==24381== +==24381== Open file descriptor 113: +==24381== +==24381== +==24381== Open file descriptor 110: +==24381== +==24381== +==24381== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscVecTools_valgrind.txt +==24381== +==24381== +==24381== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24381== +==24381== +==24381== +==24381== HEAP SUMMARY: +==24381== in use at exit: 617,858 bytes in 8,238 blocks +==24381== total heap usage: 45,464 allocs, 37,226 frees, 1,338,259,258 bytes allocated +==24381== +==24381== LEAK SUMMARY: +==24381== definitely lost: 0 bytes in 0 blocks +==24381== indirectly lost: 0 bytes in 0 blocks +==24381== possibly lost: 0 bytes in 0 blocks +==24381== still reachable: 24 bytes in 2 blocks +==24381== suppressed: 617,834 bytes in 8,236 blocks +==24381== Reachable blocks (those to which a pointer was found) are not shown. +==24381== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24381== +==24381== For lists of detected and suppressed errors, rerun with: -s +==24381== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestPlaneStimulusCellFactory_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPlaneStimulusCellFactory_valgrind.txt new file mode 100644 index 000000000..ab2aaaaa3 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPlaneStimulusCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==43624== Memcheck, a memory error detector +==43624== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43624== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43624== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPlaneStimulusCellFactory -malloc_debug -malloc_dump -memory_info +==43624== Parent PID: 24048 +==43624== +==43624== +==43624== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43624== Open file descriptor 12: +==43624== at 0xBC0507D: pipe (pipe.c:29) +==43624== by 0x1432407D: ??? +==43624== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43624== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43624== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43624== by 0xA160D38: PetscInitialize (pinit.c:924) +==43624== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43624== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43624== by 0x12063D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43624== by 0x11B96D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43624== by 0x11E212: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43624== by 0x11E0B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43624== by 0x11E749: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43624== by 0x119D95: main (TestPlaneStimulusCellFactory.cpp:19) +==43624== +==43624== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43624== at 0xBC09A1C: __open_nocancel (open64_nocancel.c:39) +==43624== by 0xBB8DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43624== by 0xB3F0822: ??? +==43624== by 0xB3F096F: ??? +==43624== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43624== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43624== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43624== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43624== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43624== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43624== by 0xA160D38: PetscInitialize (pinit.c:924) +==43624== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43624== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43624== by 0x12063D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43624== by 0x11B96D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43624== by 0x11E212: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43624== by 0x11E0B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43624== by 0x11E749: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43624== by 0x119D95: main (TestPlaneStimulusCellFactory.cpp:19) +==43624== +==43624== Open file descriptor 113: +==43624== +==43624== +==43624== Open file descriptor 110: +==43624== +==43624== +==43624== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPlaneStimulusCellFactory_valgrind.txt +==43624== +==43624== +==43624== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43624== +==43624== +==43624== +==43624== HEAP SUMMARY: +==43624== in use at exit: 618,338 bytes in 8,238 blocks +==43624== total heap usage: 82,003 allocs, 73,765 frees, 1,343,193,772 bytes allocated +==43624== +==43624== LEAK SUMMARY: +==43624== definitely lost: 0 bytes in 0 blocks +==43624== indirectly lost: 0 bytes in 0 blocks +==43624== possibly lost: 0 bytes in 0 blocks +==43624== still reachable: 24 bytes in 2 blocks +==43624== suppressed: 618,314 bytes in 8,236 blocks +==43624== Reachable blocks (those to which a pointer was found) are not shown. +==43624== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43624== +==43624== For lists of detected and suppressed errors, rerun with: -s +==43624== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestPostProcessingWriter_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPostProcessingWriter_valgrind.txt new file mode 100644 index 000000000..cb24cb1e0 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPostProcessingWriter_valgrind.txt @@ -0,0 +1,73 @@ +==43567== Memcheck, a memory error detector +==43567== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43567== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43567== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPostProcessingWriter -malloc_debug -malloc_dump -memory_info +==43567== Parent PID: 24048 +==43567== +==43567== +==43567== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43567== Open file descriptor 12: +==43567== at 0xBF6D07D: pipe (pipe.c:29) +==43567== by 0x1432407D: ??? +==43567== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43567== by 0xC2EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43567== by 0xC283D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43567== by 0xA601D38: PetscInitialize (pinit.c:924) +==43567== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43567== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43567== by 0x127348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43567== by 0x1210D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43567== by 0x123BD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43567== by 0x123AD3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43567== by 0x1240E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43567== by 0x11F8D5: main (TestPostProcessingWriter.cpp:18) +==43567== +==43567== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43567== at 0xBF71A1C: __open_nocancel (open64_nocancel.c:39) +==43567== by 0xBEF5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43567== by 0xB891822: ??? +==43567== by 0xB89196F: ??? +==43567== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43567== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43567== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43567== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43567== by 0xC2EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43567== by 0xC283D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43567== by 0xA601D38: PetscInitialize (pinit.c:924) +==43567== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43567== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43567== by 0x127348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43567== by 0x1210D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43567== by 0x123BD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43567== by 0x123AD3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43567== by 0x1240E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43567== by 0x11F8D5: main (TestPostProcessingWriter.cpp:18) +==43567== +==43567== Open file descriptor 113: +==43567== +==43567== +==43567== Open file descriptor 110: +==43567== +==43567== +==43567== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPostProcessingWriter_valgrind.txt +==43567== +==43567== +==43567== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43567== +==43567== +==43567== +==43567== HEAP SUMMARY: +==43567== in use at exit: 618,745 bytes in 8,244 blocks +==43567== total heap usage: 10,863,095 allocs, 10,854,851 frees, 11,717,760,433 bytes allocated +==43567== +==43567== LEAK SUMMARY: +==43567== definitely lost: 0 bytes in 0 blocks +==43567== indirectly lost: 0 bytes in 0 blocks +==43567== possibly lost: 0 bytes in 0 blocks +==43567== still reachable: 24 bytes in 2 blocks +==43567== suppressed: 618,721 bytes in 8,242 blocks +==43567== Reachable blocks (those to which a pointer was found) are not shown. +==43567== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43567== +==43567== For lists of detected and suppressed errors, rerun with: -s +==43567== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 101 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestPottsBasedCellPopulation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPottsBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..4051e54a9 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPottsBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26204== Memcheck, a memory error detector +==26204== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26204== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26204== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26204== Parent PID: 24048 +==26204== +==26204== +==26204== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26204== Open file descriptor 12: +==26204== at 0x10DD907D: pipe (pipe.c:29) +==26204== by 0x196AD07D: ??? +==26204== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26204== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26204== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26204== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26204== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26204== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26204== by 0x16AB57: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26204== by 0x162E49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26204== by 0x166190: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26204== by 0x166030: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26204== by 0x1666C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26204== by 0x161265: main (TestPottsBasedCellPopulation.cpp:19) +==26204== +==26204== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26204== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==26204== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26204== by 0xF137822: ??? +==26204== by 0xF13796F: ??? +==26204== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26204== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26204== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26204== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26204== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26204== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26204== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26204== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26204== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26204== by 0x16AB57: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26204== by 0x162E49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26204== by 0x166190: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26204== by 0x166030: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26204== by 0x1666C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26204== by 0x161265: main (TestPottsBasedCellPopulation.cpp:19) +==26204== +==26204== Open file descriptor 113: +==26204== +==26204== +==26204== Open file descriptor 110: +==26204== +==26204== +==26204== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsBasedCellPopulation_valgrind.txt +==26204== +==26204== +==26204== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26204== +==26204== +==26204== +==26204== HEAP SUMMARY: +==26204== in use at exit: 618,354 bytes in 8,239 blocks +==26204== total heap usage: 74,950 allocs, 66,711 frees, 1,343,982,922 bytes allocated +==26204== +==26204== LEAK SUMMARY: +==26204== definitely lost: 0 bytes in 0 blocks +==26204== indirectly lost: 0 bytes in 0 blocks +==26204== possibly lost: 0 bytes in 0 blocks +==26204== still reachable: 56 bytes in 3 blocks +==26204== suppressed: 618,298 bytes in 8,236 blocks +==26204== Reachable blocks (those to which a pointer was found) are not shown. +==26204== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26204== +==26204== For lists of detected and suppressed errors, rerun with: -s +==26204== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestPottsBasedCryptSimulation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPottsBasedCryptSimulation_valgrind.txt new file mode 100644 index 000000000..05a161f00 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPottsBasedCryptSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==40799== Memcheck, a memory error detector +==40799== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40799== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40799== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestPottsBasedCryptSimulation -malloc_debug -malloc_dump -memory_info +==40799== Parent PID: 24048 +==40799== +==40799== +==40799== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40799== Open file descriptor 12: +==40799== at 0x110B907D: pipe (pipe.c:29) +==40799== by 0x1B36F07D: ??? +==40799== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40799== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40799== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40799== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40799== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40799== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40799== by 0x122076: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40799== by 0x11D6B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40799== by 0x11FAA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40799== by 0x11F9A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40799== by 0x11FFB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40799== by 0x11BEB5: main (TestPottsBasedCryptSimulation.cpp:18) +==40799== +==40799== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40799== at 0x110BDA1C: __open_nocancel (open64_nocancel.c:39) +==40799== by 0x11041BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40799== by 0x109F7822: ??? +==40799== by 0x109F796F: ??? +==40799== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40799== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40799== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40799== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40799== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40799== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40799== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40799== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40799== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40799== by 0x122076: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40799== by 0x11D6B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40799== by 0x11FAA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40799== by 0x11F9A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40799== by 0x11FFB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40799== by 0x11BEB5: main (TestPottsBasedCryptSimulation.cpp:18) +==40799== +==40799== Open file descriptor 113: +==40799== +==40799== +==40799== Open file descriptor 110: +==40799== +==40799== +==40799== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsBasedCryptSimulation_valgrind.txt +==40799== +==40799== +==40799== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40799== +==40799== +==40799== +==40799== HEAP SUMMARY: +==40799== in use at exit: 618,377 bytes in 8,236 blocks +==40799== total heap usage: 46,840,255 allocs, 46,832,019 frees, 5,592,611,606 bytes allocated +==40799== +==40799== LEAK SUMMARY: +==40799== definitely lost: 0 bytes in 0 blocks +==40799== indirectly lost: 0 bytes in 0 blocks +==40799== possibly lost: 0 bytes in 0 blocks +==40799== still reachable: 136 bytes in 4 blocks +==40799== suppressed: 618,241 bytes in 8,232 blocks +==40799== Reachable blocks (those to which a pointer was found) are not shown. +==40799== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40799== +==40799== For lists of detected and suppressed errors, rerun with: -s +==40799== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestPottsElement_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPottsElement_valgrind.txt new file mode 100644 index 000000000..6909f3d2e --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPottsElement_valgrind.txt @@ -0,0 +1,73 @@ +==25807== Memcheck, a memory error detector +==25807== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25807== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25807== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsElement -malloc_debug -malloc_dump -memory_info +==25807== Parent PID: 24048 +==25807== +==25807== +==25807== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25807== Open file descriptor 12: +==25807== at 0xF4B407D: pipe (pipe.c:29) +==25807== by 0x196AD07D: ??? +==25807== by 0x14C664CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25807== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25807== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25807== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25807== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25807== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25807== by 0x11A5B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25807== by 0x115A6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25807== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25807== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25807== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25807== by 0x113E95: main (TestPottsElement.cpp:19) +==25807== +==25807== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25807== at 0xF4B8A1C: __open_nocancel (open64_nocancel.c:39) +==25807== by 0xF43CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25807== by 0xF137822: ??? +==25807== by 0xF13796F: ??? +==25807== by 0x14D0B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25807== by 0x14D0B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25807== by 0x14CC1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25807== by 0x14C662DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25807== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25807== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25807== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25807== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25807== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25807== by 0x11A5B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25807== by 0x115A6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25807== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25807== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25807== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25807== by 0x113E95: main (TestPottsElement.cpp:19) +==25807== +==25807== Open file descriptor 113: +==25807== +==25807== +==25807== Open file descriptor 110: +==25807== +==25807== +==25807== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsElement_valgrind.txt +==25807== +==25807== +==25807== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25807== +==25807== +==25807== +==25807== HEAP SUMMARY: +==25807== in use at exit: 618,322 bytes in 8,238 blocks +==25807== total heap usage: 53,131 allocs, 44,893 frees, 1,338,897,614 bytes allocated +==25807== +==25807== LEAK SUMMARY: +==25807== definitely lost: 0 bytes in 0 blocks +==25807== indirectly lost: 0 bytes in 0 blocks +==25807== possibly lost: 0 bytes in 0 blocks +==25807== still reachable: 24 bytes in 2 blocks +==25807== suppressed: 618,298 bytes in 8,236 blocks +==25807== Reachable blocks (those to which a pointer was found) are not shown. +==25807== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25807== +==25807== For lists of detected and suppressed errors, rerun with: -s +==25807== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestPottsMeshGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPottsMeshGenerator_valgrind.txt new file mode 100644 index 000000000..0cadbd7d2 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPottsMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==25854== Memcheck, a memory error detector +==25854== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25854== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25854== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshGenerator -malloc_debug -malloc_dump -memory_info +==25854== Parent PID: 24048 +==25854== +==25854== +==25854== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25854== Open file descriptor 12: +==25854== at 0xF4B407D: pipe (pipe.c:29) +==25854== by 0x196AD07D: ??? +==25854== by 0x14C664CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25854== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25854== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25854== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25854== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25854== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25854== by 0x118EF2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25854== by 0x1145AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25854== by 0x116DAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25854== by 0x116C4D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25854== by 0x1172E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25854== by 0x1129D5: main (TestPottsMeshGenerator.cpp:19) +==25854== +==25854== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25854== at 0xF4B8A1C: __open_nocancel (open64_nocancel.c:39) +==25854== by 0xF43CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25854== by 0xF137822: ??? +==25854== by 0xF13796F: ??? +==25854== by 0x14D0B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25854== by 0x14D0B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25854== by 0x14CC1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25854== by 0x14C662DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25854== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25854== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25854== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25854== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25854== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25854== by 0x118EF2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25854== by 0x1145AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25854== by 0x116DAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25854== by 0x116C4D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25854== by 0x1172E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25854== by 0x1129D5: main (TestPottsMeshGenerator.cpp:19) +==25854== +==25854== Open file descriptor 113: +==25854== +==25854== +==25854== Open file descriptor 110: +==25854== +==25854== +==25854== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshGenerator_valgrind.txt +==25854== +==25854== +==25854== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25854== +==25854== +==25854== +==25854== HEAP SUMMARY: +==25854== in use at exit: 618,322 bytes in 8,238 blocks +==25854== total heap usage: 154,740 allocs, 146,502 frees, 1,343,497,551 bytes allocated +==25854== +==25854== LEAK SUMMARY: +==25854== definitely lost: 0 bytes in 0 blocks +==25854== indirectly lost: 0 bytes in 0 blocks +==25854== possibly lost: 0 bytes in 0 blocks +==25854== still reachable: 24 bytes in 2 blocks +==25854== suppressed: 618,298 bytes in 8,236 blocks +==25854== Reachable blocks (those to which a pointer was found) are not shown. +==25854== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25854== +==25854== For lists of detected and suppressed errors, rerun with: -s +==25854== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestPottsMeshReader_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPottsMeshReader_valgrind.txt new file mode 100644 index 000000000..f3ea5f362 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPottsMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==25855== Memcheck, a memory error detector +==25855== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25855== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25855== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshReader -malloc_debug -malloc_dump -memory_info +==25855== Parent PID: 24048 +==25855== +==25855== +==25855== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25855== Open file descriptor 12: +==25855== at 0xF4B407D: pipe (pipe.c:29) +==25855== by 0x196AD07D: ??? +==25855== by 0x14C664CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25855== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25855== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25855== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25855== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25855== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25855== by 0x118F5E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25855== by 0x11450D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25855== by 0x116FE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25855== by 0x116E80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25855== by 0x117517: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25855== by 0x112935: main (TestPottsMeshReader.cpp:19) +==25855== +==25855== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25855== at 0xF4B8A1C: __open_nocancel (open64_nocancel.c:39) +==25855== by 0xF43CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25855== by 0xF137822: ??? +==25855== by 0xF13796F: ??? +==25855== by 0x14D0B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25855== by 0x14D0B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25855== by 0x14CC1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25855== by 0x14C662DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25855== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25855== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25855== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25855== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25855== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25855== by 0x118F5E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25855== by 0x11450D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25855== by 0x116FE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25855== by 0x116E80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25855== by 0x117517: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25855== by 0x112935: main (TestPottsMeshReader.cpp:19) +==25855== +==25855== Open file descriptor 113: +==25855== +==25855== +==25855== Open file descriptor 110: +==25855== +==25855== +==25855== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshReader_valgrind.txt +==25855== +==25855== +==25855== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25855== +==25855== +==25855== +==25855== HEAP SUMMARY: +==25855== in use at exit: 618,322 bytes in 8,238 blocks +==25855== total heap usage: 53,378 allocs, 45,140 frees, 1,339,154,845 bytes allocated +==25855== +==25855== LEAK SUMMARY: +==25855== definitely lost: 0 bytes in 0 blocks +==25855== indirectly lost: 0 bytes in 0 blocks +==25855== possibly lost: 0 bytes in 0 blocks +==25855== still reachable: 24 bytes in 2 blocks +==25855== suppressed: 618,298 bytes in 8,236 blocks +==25855== Reachable blocks (those to which a pointer was found) are not shown. +==25855== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25855== +==25855== For lists of detected and suppressed errors, rerun with: -s +==25855== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestPottsMeshWriter_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPottsMeshWriter_valgrind.txt new file mode 100644 index 000000000..dd7c15202 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPottsMeshWriter_valgrind.txt @@ -0,0 +1,73 @@ +==25862== Memcheck, a memory error detector +==25862== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25862== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25862== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshWriter -malloc_debug -malloc_dump -memory_info +==25862== Parent PID: 24048 +==25862== +==25862== +==25862== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25862== Open file descriptor 12: +==25862== at 0x10CB007D: pipe (pipe.c:29) +==25862== by 0x196AD07D: ??? +==25862== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25862== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25862== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25862== by 0xF225D38: PetscInitialize (pinit.c:924) +==25862== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25862== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25862== by 0x11BA1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25862== by 0x1156B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25862== by 0x117F02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25862== by 0x117DFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25862== by 0x118411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25862== by 0x113EB5: main (TestPottsMeshWriter.cpp:18) +==25862== +==25862== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25862== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==25862== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25862== by 0x104B5822: ??? +==25862== by 0x104B596F: ??? +==25862== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25862== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25862== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25862== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25862== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25862== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25862== by 0xF225D38: PetscInitialize (pinit.c:924) +==25862== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25862== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25862== by 0x11BA1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25862== by 0x1156B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25862== by 0x117F02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25862== by 0x117DFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25862== by 0x118411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25862== by 0x113EB5: main (TestPottsMeshWriter.cpp:18) +==25862== +==25862== Open file descriptor 113: +==25862== +==25862== +==25862== Open file descriptor 110: +==25862== +==25862== +==25862== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshWriter_valgrind.txt +==25862== +==25862== +==25862== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25862== +==25862== +==25862== +==25862== HEAP SUMMARY: +==25862== in use at exit: 618,322 bytes in 8,238 blocks +==25862== total heap usage: 54,555 allocs, 46,317 frees, 1,339,582,800 bytes allocated +==25862== +==25862== LEAK SUMMARY: +==25862== definitely lost: 0 bytes in 0 blocks +==25862== indirectly lost: 0 bytes in 0 blocks +==25862== possibly lost: 0 bytes in 0 blocks +==25862== still reachable: 24 bytes in 2 blocks +==25862== suppressed: 618,298 bytes in 8,236 blocks +==25862== Reachable blocks (those to which a pointer was found) are not shown. +==25862== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25862== +==25862== For lists of detected and suppressed errors, rerun with: -s +==25862== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestPottsMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPottsMesh_valgrind.txt new file mode 100644 index 000000000..aee7d06bc --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPottsMesh_valgrind.txt @@ -0,0 +1,73 @@ +==25836== Memcheck, a memory error detector +==25836== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25836== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25836== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMesh -malloc_debug -malloc_dump -memory_info +==25836== Parent PID: 24048 +==25836== +==25836== +==25836== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25836== Open file descriptor 12: +==25836== at 0xF4F607D: pipe (pipe.c:29) +==25836== by 0x196AD07D: ??? +==25836== by 0x14C664CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25836== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25836== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25836== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25836== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25836== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25836== by 0x1387B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25836== by 0x13323D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25836== by 0x136272: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25836== by 0x136112: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25836== by 0x1367A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25836== by 0x131665: main (TestPottsMesh.cpp:19) +==25836== +==25836== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25836== at 0xF4FAA1C: __open_nocancel (open64_nocancel.c:39) +==25836== by 0xF47EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25836== by 0xF137822: ??? +==25836== by 0xF13796F: ??? +==25836== by 0x14D0B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25836== by 0x14D0B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25836== by 0x14CC1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25836== by 0x14C662DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25836== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25836== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25836== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25836== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25836== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25836== by 0x1387B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25836== by 0x13323D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25836== by 0x136272: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25836== by 0x136112: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25836== by 0x1367A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25836== by 0x131665: main (TestPottsMesh.cpp:19) +==25836== +==25836== Open file descriptor 113: +==25836== +==25836== +==25836== Open file descriptor 110: +==25836== +==25836== +==25836== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMesh_valgrind.txt +==25836== +==25836== +==25836== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25836== +==25836== +==25836== +==25836== HEAP SUMMARY: +==25836== in use at exit: 618,322 bytes in 8,238 blocks +==25836== total heap usage: 79,290 allocs, 71,052 frees, 1,340,374,275 bytes allocated +==25836== +==25836== LEAK SUMMARY: +==25836== definitely lost: 0 bytes in 0 blocks +==25836== indirectly lost: 0 bytes in 0 blocks +==25836== possibly lost: 0 bytes in 0 blocks +==25836== still reachable: 24 bytes in 2 blocks +==25836== suppressed: 618,298 bytes in 8,236 blocks +==25836== Reachable blocks (those to which a pointer was found) are not shown. +==25836== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25836== +==25836== For lists of detected and suppressed errors, rerun with: -s +==25836== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestPottsUpdateRules_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPottsUpdateRules_valgrind.txt new file mode 100644 index 000000000..b54a39c76 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPottsUpdateRules_valgrind.txt @@ -0,0 +1,73 @@ +==26206== Memcheck, a memory error detector +==26206== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26206== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26206== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsUpdateRules -malloc_debug -malloc_dump -memory_info +==26206== Parent PID: 24048 +==26206== +==26206== +==26206== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26206== Open file descriptor 12: +==26206== at 0xF09707D: pipe (pipe.c:29) +==26206== by 0x196AC07D: ??? +==26206== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26206== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26206== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26206== by 0xD62FD38: PetscInitialize (pinit.c:924) +==26206== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26206== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26206== by 0x133C55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26206== by 0x12C93D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26206== by 0x12F6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26206== by 0x12F55E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26206== by 0x12FBF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26206== by 0x12AD65: main (TestPottsUpdateRules.cpp:19) +==26206== +==26206== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26206== at 0xF09BA1C: __open_nocancel (open64_nocancel.c:39) +==26206== by 0xF01FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26206== by 0xD4DA822: ??? +==26206== by 0xD4DA96F: ??? +==26206== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26206== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26206== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26206== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26206== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26206== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26206== by 0xD62FD38: PetscInitialize (pinit.c:924) +==26206== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26206== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26206== by 0x133C55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26206== by 0x12C93D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26206== by 0x12F6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26206== by 0x12F55E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26206== by 0x12FBF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26206== by 0x12AD65: main (TestPottsUpdateRules.cpp:19) +==26206== +==26206== Open file descriptor 113: +==26206== +==26206== +==26206== Open file descriptor 110: +==26206== +==26206== +==26206== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsUpdateRules_valgrind.txt +==26206== +==26206== +==26206== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26206== +==26206== +==26206== +==26206== HEAP SUMMARY: +==26206== in use at exit: 618,354 bytes in 8,239 blocks +==26206== total heap usage: 67,528 allocs, 59,289 frees, 1,339,983,947 bytes allocated +==26206== +==26206== LEAK SUMMARY: +==26206== definitely lost: 0 bytes in 0 blocks +==26206== indirectly lost: 0 bytes in 0 blocks +==26206== possibly lost: 0 bytes in 0 blocks +==26206== still reachable: 56 bytes in 3 blocks +==26206== suppressed: 618,298 bytes in 8,236 blocks +==26206== Reachable blocks (those to which a pointer was found) are not shown. +==26206== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26206== +==26206== For lists of detected and suppressed errors, rerun with: -s +==26206== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestProblemDefinitions_valgrind.txt b/log-files/2024-09-23_05-40-48/TestProblemDefinitions_valgrind.txt new file mode 100644 index 000000000..86f74e168 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestProblemDefinitions_valgrind.txt @@ -0,0 +1,73 @@ +==25389== Memcheck, a memory error detector +==25389== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25389== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25389== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestProblemDefinitions -malloc_debug -malloc_dump -memory_info +==25389== Parent PID: 24048 +==25389== +==25389== +==25389== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25389== Open file descriptor 12: +==25389== at 0x6EBB07D: pipe (pipe.c:29) +==25389== by 0x106D707D: ??? +==25389== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25389== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25389== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25389== by 0x74F2D38: PetscInitialize (pinit.c:924) +==25389== by 0x66D71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25389== by 0x66D7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25389== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25389== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25389== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25389== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25389== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25389== by 0x124F95: main (TestProblemDefinitions.cpp:19) +==25389== +==25389== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25389== at 0x6EBFA1C: __open_nocancel (open64_nocancel.c:39) +==25389== by 0x6E43BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25389== by 0x6712822: ??? +==25389== by 0x671296F: ??? +==25389== by 0xC0846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25389== by 0xC084938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25389== by 0xC03A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25389== by 0xBFDF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25389== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25389== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25389== by 0x74F2D38: PetscInitialize (pinit.c:924) +==25389== by 0x66D71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25389== by 0x66D7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25389== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25389== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25389== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25389== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25389== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25389== by 0x124F95: main (TestProblemDefinitions.cpp:19) +==25389== +==25389== Open file descriptor 113: +==25389== +==25389== +==25389== Open file descriptor 110: +==25389== +==25389== +==25389== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestProblemDefinitions_valgrind.txt +==25389== +==25389== +==25389== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25389== +==25389== +==25389== +==25389== HEAP SUMMARY: +==25389== in use at exit: 618,274 bytes in 8,238 blocks +==25389== total heap usage: 48,561 allocs, 40,323 frees, 1,338,503,473 bytes allocated +==25389== +==25389== LEAK SUMMARY: +==25389== definitely lost: 0 bytes in 0 blocks +==25389== indirectly lost: 0 bytes in 0 blocks +==25389== possibly lost: 0 bytes in 0 blocks +==25389== still reachable: 24 bytes in 2 blocks +==25389== suppressed: 618,250 bytes in 8,236 blocks +==25389== Reachable blocks (those to which a pointer was found) are not shown. +==25389== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25389== +==25389== For lists of detected and suppressed errors, rerun with: -s +==25389== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestProgressReporter_valgrind.txt b/log-files/2024-09-23_05-40-48/TestProgressReporter_valgrind.txt new file mode 100644 index 000000000..0dcdd9a91 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestProgressReporter_valgrind.txt @@ -0,0 +1,73 @@ +==24246== Memcheck, a memory error detector +==24246== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24246== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24246== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestProgressReporter -malloc_debug -malloc_dump -memory_info +==24246== Parent PID: 24048 +==24246== +==24246== +==24246== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24246== Open file descriptor 12: +==24246== at 0x616907D: pipe (pipe.c:29) +==24246== by 0xAEA507D: ??? +==24246== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24246== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24246== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24246== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24246== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24246== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24246== by 0x118E11: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24246== by 0x11280D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24246== by 0x1150D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24246== by 0x114F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24246== by 0x11560B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24246== by 0x110C35: main (TestProgressReporter.cpp:19) +==24246== +==24246== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24246== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24246== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24246== by 0x5CB3822: ??? +==24246== by 0x5CB396F: ??? +==24246== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24246== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24246== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24246== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24246== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24246== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24246== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24246== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24246== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24246== by 0x118E11: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24246== by 0x11280D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24246== by 0x1150D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24246== by 0x114F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24246== by 0x11560B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24246== by 0x110C35: main (TestProgressReporter.cpp:19) +==24246== +==24246== Open file descriptor 113: +==24246== +==24246== +==24246== Open file descriptor 110: +==24246== +==24246== +==24246== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestProgressReporter_valgrind.txt +==24246== +==24246== +==24246== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24246== +==24246== +==24246== +==24246== HEAP SUMMARY: +==24246== in use at exit: 617,842 bytes in 8,238 blocks +==24246== total heap usage: 45,065 allocs, 36,827 frees, 1,338,282,148 bytes allocated +==24246== +==24246== LEAK SUMMARY: +==24246== definitely lost: 0 bytes in 0 blocks +==24246== indirectly lost: 0 bytes in 0 blocks +==24246== possibly lost: 0 bytes in 0 blocks +==24246== still reachable: 24 bytes in 2 blocks +==24246== suppressed: 617,818 bytes in 8,236 blocks +==24246== Reachable blocks (those to which a pointer was found) are not shown. +==24246== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24246== +==24246== For lists of detected and suppressed errors, rerun with: -s +==24246== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestPropagationPropertiesCalculator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPropagationPropertiesCalculator_valgrind.txt new file mode 100644 index 000000000..6b5b21116 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPropagationPropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==43579== Memcheck, a memory error detector +==43579== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43579== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43579== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPropagationPropertiesCalculator -malloc_debug -malloc_dump -memory_info +==43579== Parent PID: 24048 +==43579== +==43579== +==43579== FILE DESCRIPTORS: 7 open (3 std) at exit. +==43579== Open file descriptor 113: +==43579== +==43579== +==43579== Open file descriptor 110: +==43579== +==43579== +==43579== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPropagationPropertiesCalculator_valgrind.txt +==43579== +==43579== +==43579== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43579== +==43579== +==43579== +==43579== HEAP SUMMARY: +==43579== in use at exit: 24 bytes in 2 blocks +==43579== total heap usage: 14,997,641 allocs, 14,997,639 frees, 9,167,962,375 bytes allocated +==43579== +==43579== LEAK SUMMARY: +==43579== definitely lost: 0 bytes in 0 blocks +==43579== indirectly lost: 0 bytes in 0 blocks +==43579== possibly lost: 0 bytes in 0 blocks +==43579== still reachable: 24 bytes in 2 blocks +==43579== suppressed: 0 bytes in 0 blocks +==43579== Reachable blocks (those to which a pointer was found) are not shown. +==43579== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43579== +==43579== For lists of detected and suppressed errors, rerun with: -s +==43579== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-23_05-40-48/TestPseudoEcgCalculator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestPseudoEcgCalculator_valgrind.txt new file mode 100644 index 000000000..cd758fb19 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestPseudoEcgCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==43585== Memcheck, a memory error detector +==43585== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43585== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43585== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPseudoEcgCalculator -malloc_debug -malloc_dump -memory_info +==43585== Parent PID: 24048 +==43585== +==43585== +==43585== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43585== Open file descriptor 12: +==43585== at 0xBB4107D: pipe (pipe.c:29) +==43585== by 0x1432407D: ??? +==43585== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43585== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43585== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43585== by 0xA1D3D38: PetscInitialize (pinit.c:924) +==43585== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43585== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43585== by 0x1233A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43585== by 0x11E38D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43585== by 0x120E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43585== by 0x120CC6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43585== by 0x12135D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43585== by 0x11C615: main (TestPseudoEcgCalculator.cpp:19) +==43585== +==43585== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43585== at 0xBB45A1C: __open_nocancel (open64_nocancel.c:39) +==43585== by 0xBAC9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43585== by 0xB463822: ??? +==43585== by 0xB46396F: ??? +==43585== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43585== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43585== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43585== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43585== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43585== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43585== by 0xA1D3D38: PetscInitialize (pinit.c:924) +==43585== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43585== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43585== by 0x1233A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43585== by 0x11E38D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43585== by 0x120E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43585== by 0x120CC6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43585== by 0x12135D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43585== by 0x11C615: main (TestPseudoEcgCalculator.cpp:19) +==43585== +==43585== Open file descriptor 113: +==43585== +==43585== +==43585== Open file descriptor 110: +==43585== +==43585== +==43585== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPseudoEcgCalculator_valgrind.txt +==43585== +==43585== +==43585== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43585== +==43585== +==43585== +==43585== HEAP SUMMARY: +==43585== in use at exit: 618,818 bytes in 8,248 blocks +==43585== total heap usage: 282,960 allocs, 274,712 frees, 1,373,756,666 bytes allocated +==43585== +==43585== LEAK SUMMARY: +==43585== definitely lost: 0 bytes in 0 blocks +==43585== indirectly lost: 0 bytes in 0 blocks +==43585== possibly lost: 0 bytes in 0 blocks +==43585== still reachable: 24 bytes in 2 blocks +==43585== suppressed: 618,794 bytes in 8,246 blocks +==43585== Reachable blocks (those to which a pointer was found) are not shown. +==43585== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43585== +==43585== For lists of detected and suppressed errors, rerun with: -s +==43585== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 38) diff --git a/log-files/2024-09-23_05-40-48/TestQuadraticBasisFunction_valgrind.txt b/log-files/2024-09-23_05-40-48/TestQuadraticBasisFunction_valgrind.txt new file mode 100644 index 000000000..376ffc840 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestQuadraticBasisFunction_valgrind.txt @@ -0,0 +1,73 @@ +==25306== Memcheck, a memory error detector +==25306== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25306== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25306== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestQuadraticBasisFunction -malloc_debug -malloc_dump -memory_info +==25306== Parent PID: 24048 +==25306== +==25306== +==25306== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25306== Open file descriptor 12: +==25306== at 0x6CAC07D: pipe (pipe.c:29) +==25306== by 0x104D507D: ??? +==25306== by 0xC31D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25306== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25306== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25306== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25306== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25306== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25306== by 0x12166A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25306== by 0x11D0F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25306== by 0x11F5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25306== by 0x11F4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25306== by 0x11FB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25306== by 0x11B8F5: main (TestQuadraticBasisFunction.cpp:18) +==25306== +==25306== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25306== at 0x6CB0A1C: __open_nocancel (open64_nocancel.c:39) +==25306== by 0x6C34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25306== by 0x692F822: ??? +==25306== by 0x692F96F: ??? +==25306== by 0xC3C26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25306== by 0xC3C2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25306== by 0xC378922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25306== by 0xC31D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25306== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25306== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25306== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25306== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25306== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25306== by 0x12166A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25306== by 0x11D0F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25306== by 0x11F5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25306== by 0x11F4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25306== by 0x11FB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25306== by 0x11B8F5: main (TestQuadraticBasisFunction.cpp:18) +==25306== +==25306== Open file descriptor 113: +==25306== +==25306== +==25306== Open file descriptor 110: +==25306== +==25306== +==25306== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraticBasisFunction_valgrind.txt +==25306== +==25306== +==25306== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25306== +==25306== +==25306== +==25306== HEAP SUMMARY: +==25306== in use at exit: 618,258 bytes in 8,238 blocks +==25306== total heap usage: 47,374 allocs, 39,136 frees, 1,338,387,999 bytes allocated +==25306== +==25306== LEAK SUMMARY: +==25306== definitely lost: 0 bytes in 0 blocks +==25306== indirectly lost: 0 bytes in 0 blocks +==25306== possibly lost: 0 bytes in 0 blocks +==25306== still reachable: 24 bytes in 2 blocks +==25306== suppressed: 618,234 bytes in 8,236 blocks +==25306== Reachable blocks (those to which a pointer was found) are not shown. +==25306== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25306== +==25306== For lists of detected and suppressed errors, rerun with: -s +==25306== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestQuadraticMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestQuadraticMesh_valgrind.txt new file mode 100644 index 000000000..57d69c400 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestQuadraticMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24524== Memcheck, a memory error detector +==24524== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24524== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24524== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestQuadraticMesh -malloc_debug -malloc_dump -memory_info +==24524== Parent PID: 24048 +==24524== +==24524== +==24524== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24524== Open file descriptor 12: +==24524== at 0x6D7D07D: pipe (pipe.c:29) +==24524== by 0x100C507D: ??? +==24524== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24524== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24524== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24524== by 0x7017D38: PetscInitialize (pinit.c:924) +==24524== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24524== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24524== by 0x12FAA4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24524== by 0x12A6FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24524== by 0x12D700: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24524== by 0x12D5A0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24524== by 0x12DC37: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24524== by 0x128B25: main (TestQuadraticMesh.cpp:19) +==24524== +==24524== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24524== at 0x6D81A1C: __open_nocancel (open64_nocancel.c:39) +==24524== by 0x6D05BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24524== by 0x6590822: ??? +==24524== by 0x659096F: ??? +==24524== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24524== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24524== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24524== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24524== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24524== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24524== by 0x7017D38: PetscInitialize (pinit.c:924) +==24524== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24524== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24524== by 0x12FAA4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24524== by 0x12A6FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24524== by 0x12D700: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24524== by 0x12D5A0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24524== by 0x12DC37: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24524== by 0x128B25: main (TestQuadraticMesh.cpp:19) +==24524== +==24524== Open file descriptor 113: +==24524== +==24524== +==24524== Open file descriptor 110: +==24524== +==24524== +==24524== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraticMesh_valgrind.txt +==24524== +==24524== +==24524== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24524== +==24524== +==24524== +==24524== HEAP SUMMARY: +==24524== in use at exit: 618,226 bytes in 8,238 blocks +==24524== total heap usage: 721,071 allocs, 712,833 frees, 1,393,907,386 bytes allocated +==24524== +==24524== LEAK SUMMARY: +==24524== definitely lost: 0 bytes in 0 blocks +==24524== indirectly lost: 0 bytes in 0 blocks +==24524== possibly lost: 0 bytes in 0 blocks +==24524== still reachable: 24 bytes in 2 blocks +==24524== suppressed: 618,202 bytes in 8,236 blocks +==24524== Reachable blocks (those to which a pointer was found) are not shown. +==24524== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24524== +==24524== For lists of detected and suppressed errors, rerun with: -s +==24524== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 2270 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestQuadraturePointsGroup_valgrind.txt b/log-files/2024-09-23_05-40-48/TestQuadraturePointsGroup_valgrind.txt new file mode 100644 index 000000000..d2767f786 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestQuadraturePointsGroup_valgrind.txt @@ -0,0 +1,73 @@ +==25320== Memcheck, a memory error detector +==25320== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25320== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25320== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestQuadraturePointsGroup -malloc_debug -malloc_dump -memory_info +==25320== Parent PID: 24048 +==25320== +==25320== +==25320== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25320== Open file descriptor 12: +==25320== at 0x6FF107D: pipe (pipe.c:29) +==25320== by 0x104D507D: ??? +==25320== by 0xC36A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25320== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25320== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25320== by 0x7340D38: PetscInitialize (pinit.c:924) +==25320== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25320== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25320== by 0x11DFB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25320== by 0x11972D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25320== by 0x11BD38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25320== by 0x11BBD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25320== by 0x11C26F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25320== by 0x117B55: main (TestQuadraturePointsGroup.cpp:19) +==25320== +==25320== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25320== at 0x6FF5A1C: __open_nocancel (open64_nocancel.c:39) +==25320== by 0x6F79BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25320== by 0x692F822: ??? +==25320== by 0x692F96F: ??? +==25320== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25320== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25320== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25320== by 0xC36A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25320== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25320== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25320== by 0x7340D38: PetscInitialize (pinit.c:924) +==25320== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25320== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25320== by 0x11DFB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25320== by 0x11972D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25320== by 0x11BD38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25320== by 0x11BBD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25320== by 0x11C26F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25320== by 0x117B55: main (TestQuadraturePointsGroup.cpp:19) +==25320== +==25320== Open file descriptor 113: +==25320== +==25320== +==25320== Open file descriptor 110: +==25320== +==25320== +==25320== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraturePointsGroup_valgrind.txt +==25320== +==25320== +==25320== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25320== +==25320== +==25320== +==25320== HEAP SUMMARY: +==25320== in use at exit: 618,258 bytes in 8,238 blocks +==25320== total heap usage: 48,442 allocs, 40,204 frees, 1,338,879,000 bytes allocated +==25320== +==25320== LEAK SUMMARY: +==25320== definitely lost: 0 bytes in 0 blocks +==25320== indirectly lost: 0 bytes in 0 blocks +==25320== possibly lost: 0 bytes in 0 blocks +==25320== still reachable: 24 bytes in 2 blocks +==25320== suppressed: 618,234 bytes in 8,236 blocks +==25320== Reachable blocks (those to which a pointer was found) are not shown. +==25320== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25320== +==25320== For lists of detected and suppressed errors, rerun with: -s +==25320== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestRKC21IvpOdeSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRKC21IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..605b9e5fa --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRKC21IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25006== Memcheck, a memory error detector +==25006== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25006== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25006== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestRKC21IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==25006== Parent PID: 24048 +==25006== +==25006== +==25006== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25006== Open file descriptor 12: +==25006== at 0x503907D: pipe (pipe.c:29) +==25006== by 0xB1E607D: ??? +==25006== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25006== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25006== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25006== by 0x5308D38: PetscInitialize (pinit.c:924) +==25006== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25006== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25006== by 0x127042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25006== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25006== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25006== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25006== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25006== by 0x11EEA5: main (TestRKC21IvpOdeSolver.cpp:19) +==25006== +==25006== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25006== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==25006== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25006== by 0x4B77822: ??? +==25006== by 0x4B7796F: ??? +==25006== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25006== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25006== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25006== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25006== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25006== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25006== by 0x5308D38: PetscInitialize (pinit.c:924) +==25006== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25006== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25006== by 0x127042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25006== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25006== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25006== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25006== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25006== by 0x11EEA5: main (TestRKC21IvpOdeSolver.cpp:19) +==25006== +==25006== Open file descriptor 113: +==25006== +==25006== +==25006== Open file descriptor 110: +==25006== +==25006== +==25006== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRKC21IvpOdeSolver_valgrind.txt +==25006== +==25006== +==25006== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25006== +==25006== +==25006== +==25006== HEAP SUMMARY: +==25006== in use at exit: 617,906 bytes in 8,238 blocks +==25006== total heap usage: 85,383 allocs, 77,145 frees, 1,339,006,304 bytes allocated +==25006== +==25006== LEAK SUMMARY: +==25006== definitely lost: 0 bytes in 0 blocks +==25006== indirectly lost: 0 bytes in 0 blocks +==25006== possibly lost: 0 bytes in 0 blocks +==25006== still reachable: 24 bytes in 2 blocks +==25006== suppressed: 617,882 bytes in 8,236 blocks +==25006== Reachable blocks (those to which a pointer was found) are not shown. +==25006== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25006== +==25006== For lists of detected and suppressed errors, rerun with: -s +==25006== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestRandomNumberGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRandomNumberGenerator_valgrind.txt new file mode 100644 index 000000000..2a686ef50 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRandomNumberGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24247== Memcheck, a memory error detector +==24247== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24247== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24247== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestRandomNumberGenerator -malloc_debug -malloc_dump -memory_info +==24247== Parent PID: 24048 +==24247== +==24247== +==24247== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24247== Open file descriptor 12: +==24247== at 0x61AB07D: pipe (pipe.c:29) +==24247== by 0xAEA507D: ??? +==24247== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24247== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24247== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24247== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24247== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24247== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24247== by 0x122A91: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24247== by 0x11DA0F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24247== by 0x1202C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24247== by 0x1201BD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24247== by 0x1207D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24247== by 0x11C205: main (TestRandomNumberGenerator.cpp:18) +==24247== +==24247== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24247== at 0x61AFA1C: __open_nocancel (open64_nocancel.c:39) +==24247== by 0x6133BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24247== by 0x4935822: ??? +==24247== by 0x493596F: ??? +==24247== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24247== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24247== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24247== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24247== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24247== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24247== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24247== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24247== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24247== by 0x122A91: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24247== by 0x11DA0F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24247== by 0x1202C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24247== by 0x1201BD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24247== by 0x1207D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24247== by 0x11C205: main (TestRandomNumberGenerator.cpp:18) +==24247== +==24247== Open file descriptor 113: +==24247== +==24247== +==24247== Open file descriptor 110: +==24247== +==24247== +==24247== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRandomNumberGenerator_valgrind.txt +==24247== +==24247== +==24247== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24247== +==24247== +==24247== +==24247== HEAP SUMMARY: +==24247== in use at exit: 620,394 bytes in 8,239 blocks +==24247== total heap usage: 45,033 allocs, 36,794 frees, 1,338,253,527 bytes allocated +==24247== +==24247== LEAK SUMMARY: +==24247== definitely lost: 0 bytes in 0 blocks +==24247== indirectly lost: 0 bytes in 0 blocks +==24247== possibly lost: 0 bytes in 0 blocks +==24247== still reachable: 2,576 bytes in 3 blocks +==24247== suppressed: 617,818 bytes in 8,236 blocks +==24247== Reachable blocks (those to which a pointer was found) are not shown. +==24247== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24247== +==24247== For lists of detected and suppressed errors, rerun with: -s +==24247== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestReplicatableVector_valgrind.txt b/log-files/2024-09-23_05-40-48/TestReplicatableVector_valgrind.txt new file mode 100644 index 000000000..7886a5753 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestReplicatableVector_valgrind.txt @@ -0,0 +1,73 @@ +==24273== Memcheck, a memory error detector +==24273== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24273== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24273== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestReplicatableVector -malloc_debug -malloc_dump -memory_info +==24273== Parent PID: 24048 +==24273== +==24273== +==24273== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24273== Open file descriptor 12: +==24273== at 0x603207D: pipe (pipe.c:29) +==24273== by 0xAEA507D: ??? +==24273== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24273== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24273== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24273== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24273== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24273== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24273== by 0x1121BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24273== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24273== by 0x110288: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24273== by 0x110183: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24273== by 0x110797: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24273== by 0x10C555: main (TestReplicatableVector.cpp:18) +==24273== +==24273== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24273== at 0x6036A1C: __open_nocancel (open64_nocancel.c:39) +==24273== by 0x5FBABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24273== by 0x5CB3822: ??? +==24273== by 0x5CB396F: ??? +==24273== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24273== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24273== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24273== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24273== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24273== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24273== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24273== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24273== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24273== by 0x1121BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24273== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24273== by 0x110288: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24273== by 0x110183: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24273== by 0x110797: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24273== by 0x10C555: main (TestReplicatableVector.cpp:18) +==24273== +==24273== Open file descriptor 113: +==24273== +==24273== +==24273== Open file descriptor 110: +==24273== +==24273== +==24273== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestReplicatableVector_valgrind.txt +==24273== +==24273== +==24273== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24273== +==24273== +==24273== +==24273== HEAP SUMMARY: +==24273== in use at exit: 617,842 bytes in 8,238 blocks +==24273== total heap usage: 47,502 allocs, 39,264 frees, 1,338,612,802 bytes allocated +==24273== +==24273== LEAK SUMMARY: +==24273== definitely lost: 0 bytes in 0 blocks +==24273== indirectly lost: 0 bytes in 0 blocks +==24273== possibly lost: 0 bytes in 0 blocks +==24273== still reachable: 24 bytes in 2 blocks +==24273== suppressed: 617,818 bytes in 8,236 blocks +==24273== Reachable blocks (those to which a pointer was found) are not shown. +==24273== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24273== +==24273== For lists of detected and suppressed errors, rerun with: -s +==24273== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestRepresentativeImmersedBoundarySimulations_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRepresentativeImmersedBoundarySimulations_valgrind.txt new file mode 100644 index 000000000..0e9a52e20 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRepresentativeImmersedBoundarySimulations_valgrind.txt @@ -0,0 +1,73 @@ +==26531== Memcheck, a memory error detector +==26531== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26531== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26531== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRepresentativeImmersedBoundarySimulations -malloc_debug -malloc_dump -memory_info +==26531== Parent PID: 24048 +==26531== +==26531== +==26531== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26531== Open file descriptor 12: +==26531== at 0x10CB007D: pipe (pipe.c:29) +==26531== by 0x196AD07D: ??? +==26531== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26531== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26531== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26531== by 0xF225D38: PetscInitialize (pinit.c:924) +==26531== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26531== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26531== by 0x12B28D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26531== by 0x126793: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26531== by 0x128B70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26531== by 0x128A6B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26531== by 0x12907F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26531== by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18) +==26531== +==26531== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26531== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==26531== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26531== by 0x104B5822: ??? +==26531== by 0x104B596F: ??? +==26531== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26531== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26531== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26531== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26531== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26531== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26531== by 0xF225D38: PetscInitialize (pinit.c:924) +==26531== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26531== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26531== by 0x12B28D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26531== by 0x126793: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26531== by 0x128B70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26531== by 0x128A6B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26531== by 0x12907F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26531== by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18) +==26531== +==26531== Open file descriptor 113: +==26531== +==26531== +==26531== Open file descriptor 110: +==26531== +==26531== +==26531== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRepresentativeImmersedBoundarySimulations_valgrind.txt +==26531== +==26531== +==26531== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26531== +==26531== +==26531== +==26531== HEAP SUMMARY: +==26531== in use at exit: 618,281 bytes in 8,235 blocks +==26531== total heap usage: 2,315,234 allocs, 2,306,999 frees, 2,101,668,278 bytes allocated +==26531== +==26531== LEAK SUMMARY: +==26531== definitely lost: 0 bytes in 0 blocks +==26531== indirectly lost: 0 bytes in 0 blocks +==26531== possibly lost: 0 bytes in 0 blocks +==26531== still reachable: 56 bytes in 3 blocks +==26531== suppressed: 618,225 bytes in 8,232 blocks +==26531== Reachable blocks (those to which a pointer was found) are not shown. +==26531== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26531== +==26531== For lists of detected and suppressed errors, rerun with: -s +==26531== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestRestitutionStimuli_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRestitutionStimuli_valgrind.txt new file mode 100644 index 000000000..34cda1994 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRestitutionStimuli_valgrind.txt @@ -0,0 +1,73 @@ +==43627== Memcheck, a memory error detector +==43627== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43627== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43627== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestRestitutionStimuli -malloc_debug -malloc_dump -memory_info +==43627== Parent PID: 24048 +==43627== +==43627== +==43627== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43627== Open file descriptor 12: +==43627== at 0x9A6507D: pipe (pipe.c:29) +==43627== by 0x1432407D: ??? +==43627== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43627== by 0x9698418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43627== by 0x9631D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43627== by 0x8328D38: PetscInitialize (pinit.c:924) +==43627== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43627== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43627== by 0x1227E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43627== by 0x11DA5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43627== by 0x12049C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43627== by 0x12033C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43627== by 0x1209D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43627== by 0x11BE85: main (TestRestitutionStimuli.cpp:19) +==43627== +==43627== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43627== at 0x9A69A1C: __open_nocancel (open64_nocancel.c:39) +==43627== by 0x99EDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43627== by 0x81D3822: ??? +==43627== by 0x81D396F: ??? +==43627== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43627== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43627== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43627== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43627== by 0x9698418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43627== by 0x9631D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43627== by 0x8328D38: PetscInitialize (pinit.c:924) +==43627== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43627== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43627== by 0x1227E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43627== by 0x11DA5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43627== by 0x12049C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43627== by 0x12033C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43627== by 0x1209D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43627== by 0x11BE85: main (TestRestitutionStimuli.cpp:19) +==43627== +==43627== Open file descriptor 113: +==43627== +==43627== +==43627== Open file descriptor 110: +==43627== +==43627== +==43627== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRestitutionStimuli_valgrind.txt +==43627== +==43627== +==43627== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43627== +==43627== +==43627== +==43627== HEAP SUMMARY: +==43627== in use at exit: 618,338 bytes in 8,238 blocks +==43627== total heap usage: 49,254 allocs, 41,016 frees, 1,338,587,130 bytes allocated +==43627== +==43627== LEAK SUMMARY: +==43627== definitely lost: 0 bytes in 0 blocks +==43627== indirectly lost: 0 bytes in 0 blocks +==43627== possibly lost: 0 bytes in 0 blocks +==43627== still reachable: 24 bytes in 2 blocks +==43627== suppressed: 618,314 bytes in 8,236 blocks +==43627== Reachable blocks (those to which a pointer was found) are not shown. +==43627== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43627== +==43627== For lists of detected and suppressed errors, rerun with: -s +==43627== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..e53fb7504 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25008== Memcheck, a memory error detector +==25008== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25008== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25008== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestRungeKuttaFehlbergIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==25008== Parent PID: 24048 +==25008== +==25008== +==25008== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25008== Open file descriptor 12: +==25008== at 0x64F007D: pipe (pipe.c:29) +==25008== by 0xB1E407D: ??? +==25008== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25008== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25008== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25008== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==25008== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25008== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25008== by 0x129E27: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25008== by 0x123D15: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25008== by 0x126B50: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25008== by 0x1269F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25008== by 0x127087: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25008== by 0x121085: main (TestRungeKuttaFehlbergIvpOdeSolver.cpp:19) +==25008== +==25008== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25008== at 0x64F4A1C: __open_nocancel (open64_nocancel.c:39) +==25008== by 0x6478BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25008== by 0x4B77822: ??? +==25008== by 0x4B7796F: ??? +==25008== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25008== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25008== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25008== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25008== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25008== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25008== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==25008== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25008== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25008== by 0x129E27: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25008== by 0x123D15: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25008== by 0x126B50: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25008== by 0x1269F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25008== by 0x127087: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25008== by 0x121085: main (TestRungeKuttaFehlbergIvpOdeSolver.cpp:19) +==25008== +==25008== Open file descriptor 113: +==25008== +==25008== +==25008== Open file descriptor 110: +==25008== +==25008== +==25008== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt +==25008== +==25008== +==25008== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25008== +==25008== +==25008== +==25008== HEAP SUMMARY: +==25008== in use at exit: 617,906 bytes in 8,238 blocks +==25008== total heap usage: 45,764 allocs, 37,526 frees, 1,338,244,939 bytes allocated +==25008== +==25008== LEAK SUMMARY: +==25008== definitely lost: 0 bytes in 0 blocks +==25008== indirectly lost: 0 bytes in 0 blocks +==25008== possibly lost: 0 bytes in 0 blocks +==25008== still reachable: 24 bytes in 2 blocks +==25008== suppressed: 617,882 bytes in 8,236 blocks +==25008== Reachable blocks (those to which a pointer was found) are not shown. +==25008== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25008== +==25008== For lists of detected and suppressed errors, rerun with: -s +==25008== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..0a90026f5 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40033== Memcheck, a memory error detector +==40033== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40033== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40033== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningContactInhibitionSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40033== Parent PID: 24048 +==40033== +==40033== +==40033== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40033== Open file descriptor 12: +==40033== at 0x10D9707D: pipe (pipe.c:29) +==40033== by 0x196AD07D: ??? +==40033== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40033== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40033== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40033== by 0xF225D38: PetscInitialize (pinit.c:924) +==40033== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40033== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40033== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40033== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40033== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40033== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40033== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40033== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) +==40033== +==40033== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40033== at 0x10D9BA1C: __open_nocancel (open64_nocancel.c:39) +==40033== by 0x10D1FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40033== by 0x104B5822: ??? +==40033== by 0x104B596F: ??? +==40033== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40033== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40033== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40033== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40033== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40033== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40033== by 0xF225D38: PetscInitialize (pinit.c:924) +==40033== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40033== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40033== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40033== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40033== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40033== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40033== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40033== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) +==40033== +==40033== Open file descriptor 113: +==40033== +==40033== +==40033== Open file descriptor 110: +==40033== +==40033== +==40033== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt +==40033== +==40033== +==40033== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40033== +==40033== +==40033== +==40033== HEAP SUMMARY: +==40033== in use at exit: 618,281 bytes in 8,235 blocks +==40033== total heap usage: 11,072,726 allocs, 11,064,491 frees, 4,765,710,995 bytes allocated +==40033== +==40033== LEAK SUMMARY: +==40033== definitely lost: 0 bytes in 0 blocks +==40033== indirectly lost: 0 bytes in 0 blocks +==40033== possibly lost: 0 bytes in 0 blocks +==40033== still reachable: 56 bytes in 3 blocks +==40033== suppressed: 618,225 bytes in 8,232 blocks +==40033== Reachable blocks (those to which a pointer was found) are not shown. +==40033== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40033== +==40033== For lists of detected and suppressed errors, rerun with: -s +==40033== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt new file mode 100644 index 000000000..02acfe1f9 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40918== Memcheck, a memory error detector +==40918== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40918== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40918== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info +==40918== Parent PID: 24048 +==40918== +==40918== +==40918== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40918== Open file descriptor 12: +==40918== at 0x1257007D: pipe (pipe.c:29) +==40918== by 0x1B36D07D: ??? +==40918== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40918== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40918== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40918== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40918== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40918== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40918== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40918== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40918== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40918== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40918== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40918== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) +==40918== +==40918== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40918== at 0x12574A1C: __open_nocancel (open64_nocancel.c:39) +==40918== by 0x124F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40918== by 0x11D75822: ??? +==40918== by 0x11D7596F: ??? +==40918== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40918== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40918== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40918== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40918== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40918== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40918== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40918== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40918== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40918== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40918== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40918== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40918== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40918== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40918== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) +==40918== +==40918== Open file descriptor 113: +==40918== +==40918== +==40918== Open file descriptor 110: +==40918== +==40918== +==40918== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt +==40918== +==40918== +==40918== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40918== +==40918== +==40918== +==40918== HEAP SUMMARY: +==40918== in use at exit: 618,297 bytes in 8,235 blocks +==40918== total heap usage: 16,186,046 allocs, 16,177,811 frees, 2,829,767,069 bytes allocated +==40918== +==40918== LEAK SUMMARY: +==40918== definitely lost: 0 bytes in 0 blocks +==40918== indirectly lost: 0 bytes in 0 blocks +==40918== possibly lost: 0 bytes in 0 blocks +==40918== still reachable: 56 bytes in 3 blocks +==40918== suppressed: 618,241 bytes in 8,232 blocks +==40918== Reachable blocks (those to which a pointer was found) are not shown. +==40918== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40918== +==40918== For lists of detected and suppressed errors, rerun with: -s +==40918== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..9726e4280 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40070== Memcheck, a memory error detector +==40070== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40070== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40070== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40070== Parent PID: 24048 +==40070== +==40070== +==40070== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40070== Open file descriptor 12: +==40070== at 0xF7F907D: pipe (pipe.c:29) +==40070== by 0x196AD07D: ??? +==40070== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40070== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40070== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40070== by 0x10127D38: PetscInitialize (pinit.c:924) +==40070== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40070== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40070== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40070== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40070== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40070== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40070== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40070== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) +==40070== +==40070== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40070== at 0xF7FDA1C: __open_nocancel (open64_nocancel.c:39) +==40070== by 0xF781BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40070== by 0xF137822: ??? +==40070== by 0xF13796F: ??? +==40070== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40070== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40070== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40070== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40070== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40070== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40070== by 0x10127D38: PetscInitialize (pinit.c:924) +==40070== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40070== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40070== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40070== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40070== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40070== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40070== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40070== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) +==40070== +==40070== Open file descriptor 113: +==40070== +==40070== +==40070== Open file descriptor 110: +==40070== +==40070== +==40070== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt +==40070== +==40070== +==40070== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40070== +==40070== +==40070== +==40070== HEAP SUMMARY: +==40070== in use at exit: 618,281 bytes in 8,235 blocks +==40070== total heap usage: 5,177,214 allocs, 5,168,979 frees, 1,778,171,164 bytes allocated +==40070== +==40070== LEAK SUMMARY: +==40070== definitely lost: 0 bytes in 0 blocks +==40070== indirectly lost: 0 bytes in 0 blocks +==40070== possibly lost: 0 bytes in 0 blocks +==40070== still reachable: 56 bytes in 3 blocks +==40070== suppressed: 618,225 bytes in 8,232 blocks +==40070== Reachable blocks (those to which a pointer was found) are not shown. +==40070== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40070== +==40070== For lists of detected and suppressed errors, rerun with: -s +==40070== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..465339ca2 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40111== Memcheck, a memory error detector +==40111== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40111== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40111== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDifferentialAdhesionSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40111== Parent PID: 24048 +==40111== +==40111== +==40111== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40111== Open file descriptor 12: +==40111== at 0x10CB007D: pipe (pipe.c:29) +==40111== by 0x196AD07D: ??? +==40111== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40111== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40111== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40111== by 0xF225D38: PetscInitialize (pinit.c:924) +==40111== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40111== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40111== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40111== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40111== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40111== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40111== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40111== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) +==40111== +==40111== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40111== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==40111== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40111== by 0x104B5822: ??? +==40111== by 0x104B596F: ??? +==40111== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40111== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40111== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40111== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40111== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40111== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40111== by 0xF225D38: PetscInitialize (pinit.c:924) +==40111== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40111== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40111== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40111== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40111== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40111== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40111== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40111== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) +==40111== +==40111== Open file descriptor 113: +==40111== +==40111== +==40111== Open file descriptor 110: +==40111== +==40111== +==40111== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt +==40111== +==40111== +==40111== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40111== +==40111== +==40111== +==40111== HEAP SUMMARY: +==40111== in use at exit: 618,297 bytes in 8,236 blocks +==40111== total heap usage: 2,563,998 allocs, 2,555,762 frees, 1,463,690,748 bytes allocated +==40111== +==40111== LEAK SUMMARY: +==40111== definitely lost: 0 bytes in 0 blocks +==40111== indirectly lost: 0 bytes in 0 blocks +==40111== possibly lost: 0 bytes in 0 blocks +==40111== still reachable: 72 bytes in 4 blocks +==40111== suppressed: 618,225 bytes in 8,232 blocks +==40111== Reachable blocks (those to which a pointer was found) are not shown. +==40111== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40111== +==40111== For lists of detected and suppressed errors, rerun with: -s +==40111== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..352e362ef --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40112== Memcheck, a memory error detector +==40112== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40112== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40112== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningImmersedBoundarySimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40112== Parent PID: 24048 +==40112== +==40112== +==40112== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40112== Open file descriptor 12: +==40112== at 0x10CB007D: pipe (pipe.c:29) +==40112== by 0x196AD07D: ??? +==40112== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40112== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40112== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40112== by 0xF225D38: PetscInitialize (pinit.c:924) +==40112== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40112== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40112== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40112== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40112== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40112== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40112== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40112== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) +==40112== +==40112== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40112== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==40112== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40112== by 0x104B5822: ??? +==40112== by 0x104B596F: ??? +==40112== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40112== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40112== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40112== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40112== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40112== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40112== by 0xF225D38: PetscInitialize (pinit.c:924) +==40112== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40112== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40112== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40112== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40112== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40112== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40112== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40112== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) +==40112== +==40112== Open file descriptor 113: +==40112== +==40112== +==40112== Open file descriptor 110: +==40112== +==40112== +==40112== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt +==40112== +==40112== +==40112== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40112== +==40112== +==40112== +==40112== HEAP SUMMARY: +==40112== in use at exit: 618,281 bytes in 8,235 blocks +==40112== total heap usage: 654,978 allocs, 646,743 frees, 1,512,861,058 bytes allocated +==40112== +==40112== LEAK SUMMARY: +==40112== definitely lost: 0 bytes in 0 blocks +==40112== indirectly lost: 0 bytes in 0 blocks +==40112== possibly lost: 0 bytes in 0 blocks +==40112== still reachable: 56 bytes in 3 blocks +==40112== suppressed: 618,225 bytes in 8,232 blocks +==40112== Reachable blocks (those to which a pointer was found) are not shown. +==40112== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40112== +==40112== For lists of detected and suppressed errors, rerun with: -s +==40112== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..910f18e0b --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40975== Memcheck, a memory error detector +==40975== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40975== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40975== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40975== Parent PID: 24048 +==40975== +==40975== +==40975== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40975== Open file descriptor 12: +==40975== at 0x1257007D: pipe (pipe.c:29) +==40975== by 0x1B36D07D: ??? +==40975== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40975== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40975== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40975== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40975== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40975== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40975== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40975== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40975== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40975== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40975== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40975== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) +==40975== +==40975== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40975== at 0x12574A1C: __open_nocancel (open64_nocancel.c:39) +==40975== by 0x124F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40975== by 0x11D75822: ??? +==40975== by 0x11D7596F: ??? +==40975== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40975== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40975== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40975== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40975== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40975== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40975== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40975== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40975== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40975== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40975== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40975== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40975== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40975== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40975== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) +==40975== +==40975== Open file descriptor 113: +==40975== +==40975== +==40975== Open file descriptor 110: +==40975== +==40975== +==40975== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt +==40975== +==40975== +==40975== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40975== +==40975== +==40975== +==40975== HEAP SUMMARY: +==40975== in use at exit: 618,370 bytes in 8,239 blocks +==40975== total heap usage: 1,753,599 allocs, 1,745,360 frees, 1,514,896,871 bytes allocated +==40975== +==40975== LEAK SUMMARY: +==40975== definitely lost: 0 bytes in 0 blocks +==40975== indirectly lost: 0 bytes in 0 blocks +==40975== possibly lost: 0 bytes in 0 blocks +==40975== still reachable: 56 bytes in 3 blocks +==40975== suppressed: 618,314 bytes in 8,236 blocks +==40975== Reachable blocks (those to which a pointer was found) are not shown. +==40975== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40975== +==40975== For lists of detected and suppressed errors, rerun with: -s +==40975== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestRunningMeshBasedSimulationsTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRunningMeshBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..2f35faee8 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRunningMeshBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40223== Memcheck, a memory error detector +==40223== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40223== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40223== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40223== Parent PID: 24048 +==40223== +==40223== +==40223== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40223== Open file descriptor 12: +==40223== at 0x10CB007D: pipe (pipe.c:29) +==40223== by 0x196AD07D: ??? +==40223== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40223== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40223== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40223== by 0xF225D38: PetscInitialize (pinit.c:924) +==40223== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40223== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40223== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40223== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40223== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40223== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40223== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40223== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) +==40223== +==40223== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40223== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==40223== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40223== by 0x104B5822: ??? +==40223== by 0x104B596F: ??? +==40223== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40223== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40223== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40223== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40223== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40223== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40223== by 0xF225D38: PetscInitialize (pinit.c:924) +==40223== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40223== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40223== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40223== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40223== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40223== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40223== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40223== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) +==40223== +==40223== Open file descriptor 113: +==40223== +==40223== +==40223== Open file descriptor 110: +==40223== +==40223== +==40223== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt +==40223== +==40223== +==40223== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40223== +==40223== +==40223== +==40223== HEAP SUMMARY: +==40223== in use at exit: 618,281 bytes in 8,235 blocks +==40223== total heap usage: 3,334,919 allocs, 3,326,684 frees, 2,266,436,830 bytes allocated +==40223== +==40223== LEAK SUMMARY: +==40223== definitely lost: 0 bytes in 0 blocks +==40223== indirectly lost: 0 bytes in 0 blocks +==40223== possibly lost: 0 bytes in 0 blocks +==40223== still reachable: 56 bytes in 3 blocks +==40223== suppressed: 618,225 bytes in 8,232 blocks +==40223== Reachable blocks (those to which a pointer was found) are not shown. +==40223== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40223== +==40223== For lists of detected and suppressed errors, rerun with: -s +==40223== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestRunningNodeBasedSimulationsTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRunningNodeBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..6c3941bfd --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRunningNodeBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40253== Memcheck, a memory error detector +==40253== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40253== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40253== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40253== Parent PID: 24048 +==40253== +==40253== +==40253== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40253== Open file descriptor 12: +==40253== at 0xF8E007D: pipe (pipe.c:29) +==40253== by 0x196AD07D: ??? +==40253== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40253== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40253== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40253== by 0x10210D38: PetscInitialize (pinit.c:924) +==40253== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40253== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40253== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40253== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40253== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40253== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40253== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40253== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) +==40253== +==40253== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40253== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==40253== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40253== by 0xF137822: ??? +==40253== by 0xF13796F: ??? +==40253== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40253== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40253== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40253== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40253== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40253== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40253== by 0x10210D38: PetscInitialize (pinit.c:924) +==40253== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40253== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40253== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40253== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40253== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40253== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40253== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40253== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) +==40253== +==40253== Open file descriptor 113: +==40253== +==40253== +==40253== Open file descriptor 110: +==40253== +==40253== +==40253== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt +==40253== +==40253== +==40253== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40253== +==40253== +==40253== +==40253== HEAP SUMMARY: +==40253== in use at exit: 618,354 bytes in 8,239 blocks +==40253== total heap usage: 672,355 allocs, 664,116 frees, 1,725,082,751 bytes allocated +==40253== +==40253== LEAK SUMMARY: +==40253== definitely lost: 0 bytes in 0 blocks +==40253== indirectly lost: 0 bytes in 0 blocks +==40253== possibly lost: 0 bytes in 0 blocks +==40253== still reachable: 56 bytes in 3 blocks +==40253== suppressed: 618,298 bytes in 8,236 blocks +==40253== Reachable blocks (those to which a pointer was found) are not shown. +==40253== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40253== +==40253== For lists of detected and suppressed errors, rerun with: -s +==40253== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestRunningPottsBasedSimulationsTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRunningPottsBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..023f65115 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRunningPottsBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40285== Memcheck, a memory error detector +==40285== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40285== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40285== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40285== Parent PID: 24048 +==40285== +==40285== +==40285== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40285== Open file descriptor 12: +==40285== at 0xDB9E07D: pipe (pipe.c:29) +==40285== by 0x196AD07D: ??? +==40285== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40285== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40285== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40285== by 0x10127D38: PetscInitialize (pinit.c:924) +==40285== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40285== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40285== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40285== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40285== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40285== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40285== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40285== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) +==40285== +==40285== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40285== at 0xDBA2A1C: __open_nocancel (open64_nocancel.c:39) +==40285== by 0xDB26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40285== by 0xD4DA822: ??? +==40285== by 0xD4DA96F: ??? +==40285== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40285== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40285== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40285== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40285== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40285== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40285== by 0x10127D38: PetscInitialize (pinit.c:924) +==40285== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40285== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40285== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40285== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40285== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40285== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40285== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40285== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) +==40285== +==40285== Open file descriptor 113: +==40285== +==40285== +==40285== Open file descriptor 110: +==40285== +==40285== +==40285== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt +==40285== +==40285== +==40285== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40285== +==40285== +==40285== +==40285== HEAP SUMMARY: +==40285== in use at exit: 618,281 bytes in 8,235 blocks +==40285== total heap usage: 40,686,890 allocs, 40,678,655 frees, 3,830,313,437 bytes allocated +==40285== +==40285== LEAK SUMMARY: +==40285== definitely lost: 0 bytes in 0 blocks +==40285== indirectly lost: 0 bytes in 0 blocks +==40285== possibly lost: 0 bytes in 0 blocks +==40285== still reachable: 56 bytes in 3 blocks +==40285== suppressed: 618,225 bytes in 8,232 blocks +==40285== Reachable blocks (those to which a pointer was found) are not shown. +==40285== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40285== +==40285== For lists of detected and suppressed errors, rerun with: -s +==40285== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..1815a215d --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40286== Memcheck, a memory error detector +==40286== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40286== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40286== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40286== Parent PID: 24048 +==40286== +==40286== +==40286== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40286== Open file descriptor 12: +==40286== at 0xFB9607D: pipe (pipe.c:29) +==40286== by 0x196AC07D: ??? +==40286== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40286== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40286== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40286== by 0x10127D38: PetscInitialize (pinit.c:924) +==40286== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40286== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40286== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40286== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40286== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40286== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40286== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40286== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) +==40286== +==40286== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40286== at 0xFB9AA1C: __open_nocancel (open64_nocancel.c:39) +==40286== by 0xFB1EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40286== by 0xF4D4822: ??? +==40286== by 0xF4D496F: ??? +==40286== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40286== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40286== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40286== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40286== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40286== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40286== by 0x10127D38: PetscInitialize (pinit.c:924) +==40286== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40286== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40286== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40286== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40286== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40286== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40286== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40286== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) +==40286== +==40286== Open file descriptor 113: +==40286== +==40286== +==40286== Open file descriptor 110: +==40286== +==40286== +==40286== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt +==40286== +==40286== +==40286== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40286== +==40286== +==40286== +==40286== HEAP SUMMARY: +==40286== in use at exit: 618,281 bytes in 8,235 blocks +==40286== total heap usage: 2,084,193 allocs, 2,075,958 frees, 1,674,709,741 bytes allocated +==40286== +==40286== LEAK SUMMARY: +==40286== definitely lost: 0 bytes in 0 blocks +==40286== indirectly lost: 0 bytes in 0 blocks +==40286== possibly lost: 0 bytes in 0 blocks +==40286== still reachable: 56 bytes in 3 blocks +==40286== suppressed: 618,225 bytes in 8,232 blocks +==40286== Reachable blocks (those to which a pointer was found) are not shown. +==40286== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40286== +==40286== For lists of detected and suppressed errors, rerun with: -s +==40286== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 32 from 32) diff --git a/log-files/2024-09-23_05-40-48/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..eae768f3a --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==41078== Memcheck, a memory error detector +==41078== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41078== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41078== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==41078== Parent PID: 24048 +==41078== +==41078== +==41078== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41078== Open file descriptor 12: +==41078== at 0x1257007D: pipe (pipe.c:29) +==41078== by 0x1B36D07D: ??? +==41078== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41078== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41078== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41078== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==41078== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41078== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41078== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41078== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41078== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41078== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41078== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41078== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) +==41078== +==41078== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41078== at 0x12574A1C: __open_nocancel (open64_nocancel.c:39) +==41078== by 0x124F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41078== by 0x11D75822: ??? +==41078== by 0x11D7596F: ??? +==41078== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41078== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41078== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41078== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41078== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41078== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41078== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==41078== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41078== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41078== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41078== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41078== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41078== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41078== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41078== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) +==41078== +==41078== Open file descriptor 113: +==41078== +==41078== +==41078== Open file descriptor 110: +==41078== +==41078== +==41078== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt +==41078== +==41078== +==41078== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41078== +==41078== +==41078== +==41078== HEAP SUMMARY: +==41078== in use at exit: 618,450 bytes in 8,240 blocks +==41078== total heap usage: 1,617,681 allocs, 1,609,441 frees, 1,458,369,269 bytes allocated +==41078== +==41078== LEAK SUMMARY: +==41078== definitely lost: 0 bytes in 0 blocks +==41078== indirectly lost: 0 bytes in 0 blocks +==41078== possibly lost: 0 bytes in 0 blocks +==41078== still reachable: 136 bytes in 4 blocks +==41078== suppressed: 618,314 bytes in 8,236 blocks +==41078== Reachable blocks (those to which a pointer was found) are not shown. +==41078== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41078== +==41078== For lists of detected and suppressed errors, rerun with: -s +==41078== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestRunningVertexBasedSimulationsTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRunningVertexBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..e1d56275d --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRunningVertexBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40287== Memcheck, a memory error detector +==40287== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40287== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40287== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40287== Parent PID: 24048 +==40287== +==40287== +==40287== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40287== Open file descriptor 12: +==40287== at 0x10D9707D: pipe (pipe.c:29) +==40287== by 0x196AD07D: ??? +==40287== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40287== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40287== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40287== by 0xF225D38: PetscInitialize (pinit.c:924) +==40287== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40287== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40287== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40287== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40287== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40287== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40287== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40287== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) +==40287== +==40287== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40287== at 0x10D9BA1C: __open_nocancel (open64_nocancel.c:39) +==40287== by 0x10D1FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40287== by 0x104B5822: ??? +==40287== by 0x104B596F: ??? +==40287== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40287== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40287== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40287== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40287== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40287== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40287== by 0xF225D38: PetscInitialize (pinit.c:924) +==40287== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40287== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40287== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40287== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40287== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40287== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40287== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40287== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) +==40287== +==40287== Open file descriptor 113: +==40287== +==40287== +==40287== Open file descriptor 110: +==40287== +==40287== +==40287== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt +==40287== +==40287== +==40287== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40287== +==40287== +==40287== +==40287== HEAP SUMMARY: +==40287== in use at exit: 618,354 bytes in 8,239 blocks +==40287== total heap usage: 1,398,842 allocs, 1,390,603 frees, 1,398,428,498 bytes allocated +==40287== +==40287== LEAK SUMMARY: +==40287== definitely lost: 0 bytes in 0 blocks +==40287== indirectly lost: 0 bytes in 0 blocks +==40287== possibly lost: 0 bytes in 0 blocks +==40287== still reachable: 56 bytes in 3 blocks +==40287== suppressed: 618,298 bytes in 8,236 blocks +==40287== Reachable blocks (those to which a pointer was found) are not shown. +==40287== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40287== +==40287== For lists of detected and suppressed errors, rerun with: -s +==40287== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestRushLarsen_valgrind.txt b/log-files/2024-09-23_05-40-48/TestRushLarsen_valgrind.txt new file mode 100644 index 000000000..ce5ac14ca --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestRushLarsen_valgrind.txt @@ -0,0 +1,73 @@ +==42777== Memcheck, a memory error detector +==42777== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42777== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42777== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestRushLarsen -malloc_debug -malloc_dump -memory_info +==42777== Parent PID: 24048 +==42777== +==42777== +==42777== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42777== Open file descriptor 12: +==42777== at 0x9C6507D: pipe (pipe.c:29) +==42777== by 0x1432407D: ??? +==42777== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42777== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42777== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42777== by 0x8505D38: PetscInitialize (pinit.c:924) +==42777== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42777== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42777== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42777== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42777== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42777== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42777== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42777== by 0x114C35: main (TestRushLarsen.cpp:18) +==42777== +==42777== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42777== at 0x9C69A1C: __open_nocancel (open64_nocancel.c:39) +==42777== by 0x9BEDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42777== by 0x9795822: ??? +==42777== by 0x979596F: ??? +==42777== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42777== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42777== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42777== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42777== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42777== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42777== by 0x8505D38: PetscInitialize (pinit.c:924) +==42777== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42777== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42777== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42777== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42777== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42777== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42777== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42777== by 0x114C35: main (TestRushLarsen.cpp:18) +==42777== +==42777== Open file descriptor 113: +==42777== +==42777== +==42777== Open file descriptor 110: +==42777== +==42777== +==42777== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRushLarsen_valgrind.txt +==42777== +==42777== +==42777== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42777== +==42777== +==42777== +==42777== HEAP SUMMARY: +==42777== in use at exit: 621,816 bytes in 8,242 blocks +==42777== total heap usage: 1,051,896 allocs, 1,043,654 frees, 1,778,851,821 bytes allocated +==42777== +==42777== LEAK SUMMARY: +==42777== definitely lost: 0 bytes in 0 blocks +==42777== indirectly lost: 0 bytes in 0 blocks +==42777== possibly lost: 0 bytes in 0 blocks +==42777== still reachable: 3,575 bytes in 10 blocks +==42777== suppressed: 618,241 bytes in 8,232 blocks +==42777== Reachable blocks (those to which a pointer was found) are not shown. +==42777== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42777== +==42777== For lists of detected and suppressed errors, rerun with: -s +==42777== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestShovingCaBasedDivisionRules_valgrind.txt b/log-files/2024-09-23_05-40-48/TestShovingCaBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..1ca629f5e --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestShovingCaBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==40515== Memcheck, a memory error detector +==40515== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40515== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40515== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestShovingCaBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==40515== Parent PID: 24048 +==40515== +==40515== +==40515== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40515== Open file descriptor 12: +==40515== at 0x1095707D: pipe (pipe.c:29) +==40515== by 0x1B36D07D: ??? +==40515== by 0x154C04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40515== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40515== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40515== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40515== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40515== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40515== by 0x12E1A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40515== by 0x128F3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40515== by 0x12B950: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40515== by 0x12B7F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40515== by 0x12BE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40515== by 0x127365: main (TestShovingCaBasedDivisionRules.cpp:19) +==40515== +==40515== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40515== at 0x1095BA1C: __open_nocancel (open64_nocancel.c:39) +==40515== by 0x108DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40515== by 0xED9C822: ??? +==40515== by 0xED9C96F: ??? +==40515== by 0x155656DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40515== by 0x15565938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40515== by 0x1551B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40515== by 0x154C02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40515== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40515== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40515== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40515== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40515== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40515== by 0x12E1A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40515== by 0x128F3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40515== by 0x12B950: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40515== by 0x12B7F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40515== by 0x12BE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40515== by 0x127365: main (TestShovingCaBasedDivisionRules.cpp:19) +==40515== +==40515== Open file descriptor 113: +==40515== +==40515== +==40515== Open file descriptor 110: +==40515== +==40515== +==40515== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestShovingCaBasedDivisionRules_valgrind.txt +==40515== +==40515== +==40515== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40515== +==40515== +==40515== +==40515== HEAP SUMMARY: +==40515== in use at exit: 618,386 bytes in 8,240 blocks +==40515== total heap usage: 57,799 allocs, 49,559 frees, 1,339,210,704 bytes allocated +==40515== +==40515== LEAK SUMMARY: +==40515== definitely lost: 0 bytes in 0 blocks +==40515== indirectly lost: 0 bytes in 0 blocks +==40515== possibly lost: 0 bytes in 0 blocks +==40515== still reachable: 72 bytes in 4 blocks +==40515== suppressed: 618,314 bytes in 8,236 blocks +==40515== Reachable blocks (those to which a pointer was found) are not shown. +==40515== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40515== +==40515== For lists of detected and suppressed errors, rerun with: -s +==40515== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestSimpleCellCycleModelsForCrypt_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSimpleCellCycleModelsForCrypt_valgrind.txt new file mode 100644 index 000000000..d0c966359 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSimpleCellCycleModelsForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40372== Memcheck, a memory error detector +==40372== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40372== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40372== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info +==40372== Parent PID: 24048 +==40372== +==40372== +==40372== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40372== Open file descriptor 12: +==40372== at 0x1095707D: pipe (pipe.c:29) +==40372== by 0x1B36D07D: ??? +==40372== by 0x154C04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40372== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40372== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40372== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40372== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40372== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40372== by 0x186CD7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40372== by 0x17F2CB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40372== by 0x18258E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40372== by 0x18242E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40372== by 0x182AC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40372== by 0x17BBF5: main (TestSimpleCellCycleModelsForCrypt.cpp:19) +==40372== +==40372== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40372== at 0x1095BA1C: __open_nocancel (open64_nocancel.c:39) +==40372== by 0x108DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40372== by 0xED9C822: ??? +==40372== by 0xED9C96F: ??? +==40372== by 0x155656DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40372== by 0x15565938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40372== by 0x1551B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40372== by 0x154C02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40372== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40372== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40372== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40372== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40372== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40372== by 0x186CD7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40372== by 0x17F2CB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40372== by 0x18258E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40372== by 0x18242E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40372== by 0x182AC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40372== by 0x17BBF5: main (TestSimpleCellCycleModelsForCrypt.cpp:19) +==40372== +==40372== Open file descriptor 113: +==40372== +==40372== +==40372== Open file descriptor 110: +==40372== +==40372== +==40372== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt +==40372== +==40372== +==40372== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40372== +==40372== +==40372== +==40372== HEAP SUMMARY: +==40372== in use at exit: 618,434 bytes in 8,240 blocks +==40372== total heap usage: 753,782 allocs, 745,542 frees, 1,372,609,143 bytes allocated +==40372== +==40372== LEAK SUMMARY: +==40372== definitely lost: 0 bytes in 0 blocks +==40372== indirectly lost: 0 bytes in 0 blocks +==40372== possibly lost: 0 bytes in 0 blocks +==40372== still reachable: 120 bytes in 4 blocks +==40372== suppressed: 618,314 bytes in 8,236 blocks +==40372== Reachable blocks (those to which a pointer was found) are not shown. +==40372== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40372== +==40372== For lists of detected and suppressed errors, rerun with: -s +==40372== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestSimpleCellCycleModels_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSimpleCellCycleModels_valgrind.txt new file mode 100644 index 000000000..d65e3e53c --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSimpleCellCycleModels_valgrind.txt @@ -0,0 +1,73 @@ +==25534== Memcheck, a memory error detector +==25534== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25534== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25534== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimpleCellCycleModels -malloc_debug -malloc_dump -memory_info +==25534== Parent PID: 24048 +==25534== +==25534== +==25534== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25534== Open file descriptor 12: +==25534== at 0xED5007D: pipe (pipe.c:29) +==25534== by 0x196AC07D: ??? +==25534== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25534== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25534== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25534== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25534== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25534== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25534== by 0x137FA7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25534== by 0x13098F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25534== by 0x133A5C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25534== by 0x1338FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25534== by 0x133F93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25534== by 0x12D2C5: main (TestSimpleCellCycleModels.cpp:19) +==25534== +==25534== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25534== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25534== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25534== by 0xD4DA822: ??? +==25534== by 0xD4DA96F: ??? +==25534== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25534== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25534== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25534== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25534== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25534== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25534== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25534== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25534== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25534== by 0x137FA7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25534== by 0x13098F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25534== by 0x133A5C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25534== by 0x1338FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25534== by 0x133F93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25534== by 0x12D2C5: main (TestSimpleCellCycleModels.cpp:19) +==25534== +==25534== Open file descriptor 113: +==25534== +==25534== +==25534== Open file descriptor 110: +==25534== +==25534== +==25534== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModels_valgrind.txt +==25534== +==25534== +==25534== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25534== +==25534== +==25534== +==25534== HEAP SUMMARY: +==25534== in use at exit: 618,386 bytes in 8,240 blocks +==25534== total heap usage: 78,950 allocs, 70,710 frees, 1,342,260,746 bytes allocated +==25534== +==25534== LEAK SUMMARY: +==25534== definitely lost: 0 bytes in 0 blocks +==25534== indirectly lost: 0 bytes in 0 blocks +==25534== possibly lost: 0 bytes in 0 blocks +==25534== still reachable: 88 bytes in 4 blocks +==25534== suppressed: 618,298 bytes in 8,236 blocks +==25534== Reachable blocks (those to which a pointer was found) are not shown. +==25534== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25534== +==25534== For lists of detected and suppressed errors, rerun with: -s +==25534== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestSimpleDataWriter_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSimpleDataWriter_valgrind.txt new file mode 100644 index 000000000..0f7fa7283 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSimpleDataWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24338== Memcheck, a memory error detector +==24338== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24338== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24338== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestSimpleDataWriter -malloc_debug -malloc_dump -memory_info +==24338== Parent PID: 24048 +==24338== +==24338== +==24338== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24338== Open file descriptor 12: +==24338== at 0x61DC07D: pipe (pipe.c:29) +==24338== by 0xAF1807D: ??? +==24338== by 0x8A2F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24338== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24338== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24338== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24338== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24338== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24338== by 0x11CE43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24338== by 0x11682D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24338== by 0x119106: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24338== by 0x118FA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24338== by 0x11963D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24338== by 0x114C55: main (TestSimpleDataWriter.cpp:19) +==24338== +==24338== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24338== at 0x61E0A1C: __open_nocancel (open64_nocancel.c:39) +==24338== by 0x6164BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24338== by 0x5D26822: ??? +==24338== by 0x5D2696F: ??? +==24338== by 0x8AD66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24338== by 0x8AD6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24338== by 0x8A8C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24338== by 0x8A2F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24338== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24338== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24338== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24338== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24338== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24338== by 0x11CE43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24338== by 0x11682D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24338== by 0x119106: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24338== by 0x118FA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24338== by 0x11963D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24338== by 0x114C55: main (TestSimpleDataWriter.cpp:19) +==24338== +==24338== Open file descriptor 113: +==24338== +==24338== +==24338== Open file descriptor 110: +==24338== +==24338== +==24338== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleDataWriter_valgrind.txt +==24338== +==24338== +==24338== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24338== +==24338== +==24338== +==24338== HEAP SUMMARY: +==24338== in use at exit: 617,858 bytes in 8,238 blocks +==24338== total heap usage: 45,178 allocs, 36,940 frees, 1,338,361,167 bytes allocated +==24338== +==24338== LEAK SUMMARY: +==24338== definitely lost: 0 bytes in 0 blocks +==24338== indirectly lost: 0 bytes in 0 blocks +==24338== possibly lost: 0 bytes in 0 blocks +==24338== still reachable: 24 bytes in 2 blocks +==24338== suppressed: 617,834 bytes in 8,236 blocks +==24338== Reachable blocks (those to which a pointer was found) are not shown. +==24338== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24338== +==24338== For lists of detected and suppressed errors, rerun with: -s +==24338== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestSimpleImpedanceProblem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSimpleImpedanceProblem_valgrind.txt new file mode 100644 index 000000000..59a484bb3 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSimpleImpedanceProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41117== Memcheck, a memory error detector +==41117== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41117== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41117== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestSimpleImpedanceProblem -malloc_debug -malloc_dump -memory_info +==41117== Parent PID: 24048 +==41117== +==41117== +==41117== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41117== Open file descriptor 12: +==41117== at 0x6D7207D: pipe (pipe.c:29) +==41117== by 0x107A407D: ??? +==41117== by 0xC01A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41117== by 0x82ED418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41117== by 0x8286D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41117== by 0x6F7DD38: PetscInitialize (pinit.c:924) +==41117== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41117== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41117== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41117== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41117== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41117== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41117== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41117== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) +==41117== +==41117== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41117== at 0x6D76A1C: __open_nocancel (open64_nocancel.c:39) +==41117== by 0x6CFABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41117== by 0x66B0822: ??? +==41117== by 0x66B096F: ??? +==41117== by 0xC0BF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41117== by 0xC0BF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41117== by 0xC075922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41117== by 0xC01A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41117== by 0x82ED418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41117== by 0x8286D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41117== by 0x6F7DD38: PetscInitialize (pinit.c:924) +==41117== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41117== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41117== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41117== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41117== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41117== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41117== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41117== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) +==41117== +==41117== Open file descriptor 113: +==41117== +==41117== +==41117== Open file descriptor 110: +==41117== +==41117== +==41117== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleImpedanceProblem_valgrind.txt +==41117== +==41117== +==41117== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41117== +==41117== +==41117== +==41117== HEAP SUMMARY: +==41117== in use at exit: 618,249 bytes in 8,234 blocks +==41117== total heap usage: 7,105,342 allocs, 7,097,108 frees, 1,601,381,078 bytes allocated +==41117== +==41117== LEAK SUMMARY: +==41117== definitely lost: 0 bytes in 0 blocks +==41117== indirectly lost: 0 bytes in 0 blocks +==41117== possibly lost: 0 bytes in 0 blocks +==41117== still reachable: 24 bytes in 2 blocks +==41117== suppressed: 618,225 bytes in 8,232 blocks +==41117== Reachable blocks (those to which a pointer was found) are not shown. +==41117== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41117== +==41117== For lists of detected and suppressed errors, rerun with: -s +==41117== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestSimpleLinearEllipticSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSimpleLinearEllipticSolver_valgrind.txt new file mode 100644 index 000000000..161f3b5a9 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSimpleLinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25095== Memcheck, a memory error detector +==25095== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25095== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25095== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleLinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==25095== Parent PID: 24048 +==25095== +==25095== +==25095== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25095== Open file descriptor 12: +==25095== at 0x84E707D: pipe (pipe.c:29) +==25095== by 0x104D507D: ??? +==25095== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25095== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25095== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25095== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25095== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25095== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25095== by 0x19C0B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25095== by 0x1968F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25095== by 0x1998A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25095== by 0x19979F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25095== by 0x199DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25095== by 0x1950F5: main (TestSimpleLinearEllipticSolver.cpp:18) +==25095== +==25095== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25095== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25095== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25095== by 0x7D3C822: ??? +==25095== by 0x7D3C96F: ??? +==25095== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25095== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25095== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25095== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25095== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25095== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25095== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25095== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25095== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25095== by 0x19C0B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25095== by 0x1968F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25095== by 0x1998A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25095== by 0x19979F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25095== by 0x199DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25095== by 0x1950F5: main (TestSimpleLinearEllipticSolver.cpp:18) +==25095== +==25095== Open file descriptor 113: +==25095== +==25095== +==25095== Open file descriptor 110: +==25095== +==25095== +==25095== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleLinearEllipticSolver_valgrind.txt +==25095== +==25095== +==25095== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25095== +==25095== +==25095== +==25095== HEAP SUMMARY: +==25095== in use at exit: 618,258 bytes in 8,238 blocks +==25095== total heap usage: 210,201 allocs, 201,963 frees, 1,356,096,884 bytes allocated +==25095== +==25095== LEAK SUMMARY: +==25095== definitely lost: 0 bytes in 0 blocks +==25095== indirectly lost: 0 bytes in 0 blocks +==25095== possibly lost: 0 bytes in 0 blocks +==25095== still reachable: 24 bytes in 2 blocks +==25095== suppressed: 618,234 bytes in 8,236 blocks +==25095== Reachable blocks (those to which a pointer was found) are not shown. +==25095== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25095== +==25095== For lists of detected and suppressed errors, rerun with: -s +==25095== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestSimpleLinearParabolicSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSimpleLinearParabolicSolver_valgrind.txt new file mode 100644 index 000000000..18982fb02 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSimpleLinearParabolicSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25088== Memcheck, a memory error detector +==25088== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25088== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25088== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleLinearParabolicSolver -malloc_debug -malloc_dump -memory_info +==25088== Parent PID: 24048 +==25088== +==25088== +==25088== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25088== Open file descriptor 12: +==25088== at 0x855A07D: pipe (pipe.c:29) +==25088== by 0x104D507D: ??? +==25088== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25088== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25088== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25088== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==25088== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25088== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25088== by 0x1553A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25088== by 0x14FA6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25088== by 0x152E08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25088== by 0x152CA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25088== by 0x15333F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25088== by 0x14DE95: main (TestSimpleLinearParabolicSolver.cpp:19) +==25088== +==25088== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25088== at 0x855EA1C: __open_nocancel (open64_nocancel.c:39) +==25088== by 0x84E2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25088== by 0x7DAF822: ??? +==25088== by 0x7DAF96F: ??? +==25088== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25088== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25088== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25088== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25088== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25088== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25088== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==25088== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25088== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25088== by 0x1553A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25088== by 0x14FA6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25088== by 0x152E08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25088== by 0x152CA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25088== by 0x15333F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25088== by 0x14DE95: main (TestSimpleLinearParabolicSolver.cpp:19) +==25088== +==25088== Open file descriptor 113: +==25088== +==25088== +==25088== Open file descriptor 110: +==25088== +==25088== +==25088== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleLinearParabolicSolver_valgrind.txt +==25088== +==25088== +==25088== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25088== +==25088== +==25088== +==25088== HEAP SUMMARY: +==25088== in use at exit: 618,738 bytes in 8,248 blocks +==25088== total heap usage: 370,030 allocs, 361,782 frees, 1,429,167,086 bytes allocated +==25088== +==25088== LEAK SUMMARY: +==25088== definitely lost: 0 bytes in 0 blocks +==25088== indirectly lost: 0 bytes in 0 blocks +==25088== possibly lost: 0 bytes in 0 blocks +==25088== still reachable: 24 bytes in 2 blocks +==25088== suppressed: 618,714 bytes in 8,246 blocks +==25088== Reachable blocks (those to which a pointer was found) are not shown. +==25088== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25088== +==25088== For lists of detected and suppressed errors, rerun with: -s +==25088== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestSimpleNonlinearEllipticSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSimpleNonlinearEllipticSolver_valgrind.txt new file mode 100644 index 000000000..5cde95ff1 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSimpleNonlinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25105== Memcheck, a memory error detector +==25105== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25105== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25105== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleNonlinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==25105== Parent PID: 24048 +==25105== +==25105== +==25105== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25105== Open file descriptor 12: +==25105== at 0x84E707D: pipe (pipe.c:29) +==25105== by 0x104D507D: ??? +==25105== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25105== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25105== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25105== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25105== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25105== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25105== by 0x14D424: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25105== by 0x14766F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25105== by 0x14A908: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25105== by 0x14A7A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25105== by 0x14AE3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25105== by 0x1458D5: main (TestSimpleNonlinearEllipticSolver.cpp:19) +==25105== +==25105== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25105== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25105== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25105== by 0x7D3C822: ??? +==25105== by 0x7D3C96F: ??? +==25105== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25105== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25105== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25105== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25105== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25105== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25105== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25105== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25105== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25105== by 0x14D424: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25105== by 0x14766F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25105== by 0x14A908: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25105== by 0x14A7A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25105== by 0x14AE3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25105== by 0x1458D5: main (TestSimpleNonlinearEllipticSolver.cpp:19) +==25105== +==25105== Open file descriptor 113: +==25105== +==25105== +==25105== Open file descriptor 110: +==25105== +==25105== +==25105== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleNonlinearEllipticSolver_valgrind.txt +==25105== +==25105== +==25105== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25105== +==25105== +==25105== +==25105== HEAP SUMMARY: +==25105== in use at exit: 618,185 bytes in 8,234 blocks +==25105== total heap usage: 390,359 allocs, 382,125 frees, 1,347,161,906 bytes allocated +==25105== +==25105== LEAK SUMMARY: +==25105== definitely lost: 0 bytes in 0 blocks +==25105== indirectly lost: 0 bytes in 0 blocks +==25105== possibly lost: 0 bytes in 0 blocks +==25105== still reachable: 24 bytes in 2 blocks +==25105== suppressed: 618,161 bytes in 8,232 blocks +==25105== Reachable blocks (those to which a pointer was found) are not shown. +==25105== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25105== +==25105== For lists of detected and suppressed errors, rerun with: -s +==25105== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-23_05-40-48/TestSimpleTargetAreaModifier_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSimpleTargetAreaModifier_valgrind.txt new file mode 100644 index 000000000..d0c400d61 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSimpleTargetAreaModifier_valgrind.txt @@ -0,0 +1,73 @@ +==39104== Memcheck, a memory error detector +==39104== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39104== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39104== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimpleTargetAreaModifier -malloc_debug -malloc_dump -memory_info +==39104== Parent PID: 24048 +==39104== +==39104== +==39104== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39104== Open file descriptor 12: +==39104== at 0x10CF207D: pipe (pipe.c:29) +==39104== by 0x196AD07D: ??? +==39104== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39104== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39104== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39104== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39104== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39104== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39104== by 0x139D63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39104== by 0x1324DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39104== by 0x1357DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39104== by 0x13567C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39104== by 0x135D13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39104== by 0x130905: main (TestSimpleTargetAreaModifier.cpp:19) +==39104== +==39104== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39104== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==39104== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39104== by 0xF137822: ??? +==39104== by 0xF13796F: ??? +==39104== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39104== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39104== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39104== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39104== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39104== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39104== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39104== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39104== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39104== by 0x139D63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39104== by 0x1324DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39104== by 0x1357DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39104== by 0x13567C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39104== by 0x135D13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39104== by 0x130905: main (TestSimpleTargetAreaModifier.cpp:19) +==39104== +==39104== Open file descriptor 113: +==39104== +==39104== +==39104== Open file descriptor 110: +==39104== +==39104== +==39104== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleTargetAreaModifier_valgrind.txt +==39104== +==39104== +==39104== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39104== +==39104== +==39104== +==39104== HEAP SUMMARY: +==39104== in use at exit: 618,354 bytes in 8,239 blocks +==39104== total heap usage: 588,725 allocs, 580,486 frees, 1,437,137,438 bytes allocated +==39104== +==39104== LEAK SUMMARY: +==39104== definitely lost: 0 bytes in 0 blocks +==39104== indirectly lost: 0 bytes in 0 blocks +==39104== possibly lost: 0 bytes in 0 blocks +==39104== still reachable: 56 bytes in 3 blocks +==39104== suppressed: 618,298 bytes in 8,236 blocks +==39104== Reachable blocks (those to which a pointer was found) are not shown. +==39104== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39104== +==39104== For lists of detected and suppressed errors, rerun with: -s +==39104== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestSimulationTime_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSimulationTime_valgrind.txt new file mode 100644 index 000000000..f79677442 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSimulationTime_valgrind.txt @@ -0,0 +1,73 @@ +==25792== Memcheck, a memory error detector +==25792== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25792== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25792== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationTime -malloc_debug -malloc_dump -memory_info +==25792== Parent PID: 24048 +==25792== +==25792== +==25792== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25792== Open file descriptor 12: +==25792== at 0xD89B07D: pipe (pipe.c:29) +==25792== by 0x196AC07D: ??? +==25792== by 0x14C654CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25792== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25792== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25792== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25792== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25792== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25792== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25792== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25792== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25792== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25792== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25792== by 0x154225: main (TestSimulationTime.cpp:19) +==25792== +==25792== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25792== at 0xD89FA1C: __open_nocancel (open64_nocancel.c:39) +==25792== by 0xD823BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25792== by 0xD4DA822: ??? +==25792== by 0xD4DA96F: ??? +==25792== by 0x14D0A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25792== by 0x14D0A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25792== by 0x14CC0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25792== by 0x14C652DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25792== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25792== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25792== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25792== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25792== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25792== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25792== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25792== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25792== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25792== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25792== by 0x154225: main (TestSimulationTime.cpp:19) +==25792== +==25792== Open file descriptor 113: +==25792== +==25792== +==25792== Open file descriptor 110: +==25792== +==25792== +==25792== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationTime_valgrind.txt +==25792== +==25792== +==25792== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25792== +==25792== +==25792== +==25792== HEAP SUMMARY: +==25792== in use at exit: 618,322 bytes in 8,238 blocks +==25792== total heap usage: 53,204 allocs, 44,966 frees, 1,338,921,593 bytes allocated +==25792== +==25792== LEAK SUMMARY: +==25792== definitely lost: 0 bytes in 0 blocks +==25792== indirectly lost: 0 bytes in 0 blocks +==25792== possibly lost: 0 bytes in 0 blocks +==25792== still reachable: 24 bytes in 2 blocks +==25792== suppressed: 618,298 bytes in 8,236 blocks +==25792== Reachable blocks (those to which a pointer was found) are not shown. +==25792== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25792== +==25792== For lists of detected and suppressed errors, rerun with: -s +==25792== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..9749658bb --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25621== Memcheck, a memory error detector +==25621== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25621== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25621== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithEllipticBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25621== Parent PID: 24048 +==25621== +==25621== +==25621== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25621== Open file descriptor 12: +==25621== at 0x1104D07D: pipe (pipe.c:29) +==25621== by 0x196AC07D: ??? +==25621== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25621== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25621== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25621== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25621== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25621== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25621== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25621== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25621== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25621== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25621== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25621== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) +==25621== +==25621== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25621== at 0x11051A1C: __open_nocancel (open64_nocancel.c:39) +==25621== by 0x10FD5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25621== by 0x10852822: ??? +==25621== by 0x1085296F: ??? +==25621== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25621== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25621== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25621== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25621== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25621== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25621== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25621== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25621== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25621== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25621== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25621== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25621== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25621== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25621== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) +==25621== +==25621== Open file descriptor 113: +==25621== +==25621== +==25621== Open file descriptor 110: +==25621== +==25621== +==25621== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt +==25621== +==25621== +==25621== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25621== +==25621== +==25621== +==25621== HEAP SUMMARY: +==25621== in use at exit: 618,281 bytes in 8,235 blocks +==25621== total heap usage: 7,729,905 allocs, 7,721,670 frees, 2,182,172,625 bytes allocated +==25621== +==25621== LEAK SUMMARY: +==25621== definitely lost: 0 bytes in 0 blocks +==25621== indirectly lost: 0 bytes in 0 blocks +==25621== possibly lost: 0 bytes in 0 blocks +==25621== still reachable: 56 bytes in 3 blocks +==25621== suppressed: 618,225 bytes in 8,232 blocks +==25621== Reachable blocks (those to which a pointer was found) are not shown. +==25621== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25621== +==25621== For lists of detected and suppressed errors, rerun with: -s +==25621== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..4e18f2f78 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25639== Memcheck, a memory error detector +==25639== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25639== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25639== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithEllipticGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25639== Parent PID: 24048 +==25639== +==25639== +==25639== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25639== Open file descriptor 12: +==25639== at 0x1104D07D: pipe (pipe.c:29) +==25639== by 0x196AC07D: ??? +==25639== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25639== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25639== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25639== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25639== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25639== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25639== by 0x12F3BB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25639== by 0x12A2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25639== by 0x12CDFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25639== by 0x12CC9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25639== by 0x12D333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25639== by 0x1286D5: main (TestSimulationsWithEllipticGrowingDomainPdeModifier.cpp:19) +==25639== +==25639== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25639== at 0x11051A1C: __open_nocancel (open64_nocancel.c:39) +==25639== by 0x10FD5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25639== by 0x10852822: ??? +==25639== by 0x1085296F: ??? +==25639== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25639== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25639== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25639== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25639== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25639== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25639== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25639== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25639== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25639== by 0x12F3BB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25639== by 0x12A2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25639== by 0x12CDFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25639== by 0x12CC9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25639== by 0x12D333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25639== by 0x1286D5: main (TestSimulationsWithEllipticGrowingDomainPdeModifier.cpp:19) +==25639== +==25639== Open file descriptor 113: +==25639== +==25639== +==25639== Open file descriptor 110: +==25639== +==25639== +==25639== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt +==25639== +==25639== +==25639== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25639== +==25639== +==25639== +==25639== HEAP SUMMARY: +==25639== in use at exit: 618,281 bytes in 8,235 blocks +==25639== total heap usage: 5,204,529 allocs, 5,196,294 frees, 2,319,825,752 bytes allocated +==25639== +==25639== LEAK SUMMARY: +==25639== definitely lost: 0 bytes in 0 blocks +==25639== indirectly lost: 0 bytes in 0 blocks +==25639== possibly lost: 0 bytes in 0 blocks +==25639== still reachable: 56 bytes in 3 blocks +==25639== suppressed: 618,225 bytes in 8,232 blocks +==25639== Reachable blocks (those to which a pointer was found) are not shown. +==25639== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25639== +==25639== For lists of detected and suppressed errors, rerun with: -s +==25639== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..e126b4127 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25682== Memcheck, a memory error detector +==25682== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25682== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25682== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithParabolicBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25682== Parent PID: 24048 +==25682== +==25682== +==25682== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25682== Open file descriptor 12: +==25682== at 0x1104D07D: pipe (pipe.c:29) +==25682== by 0x196AC07D: ??? +==25682== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25682== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25682== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25682== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25682== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25682== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25682== by 0x129501: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25682== by 0x1249F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25682== by 0x126F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25682== by 0x126E65: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25682== by 0x127479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25682== by 0x1231F5: main (TestSimulationsWithParabolicBoxDomainPdeModifier.cpp:18) +==25682== +==25682== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25682== at 0x11051A1C: __open_nocancel (open64_nocancel.c:39) +==25682== by 0x10FD5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25682== by 0x10852822: ??? +==25682== by 0x1085296F: ??? +==25682== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25682== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25682== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25682== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25682== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25682== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25682== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25682== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25682== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25682== by 0x129501: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25682== by 0x1249F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25682== by 0x126F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25682== by 0x126E65: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25682== by 0x127479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25682== by 0x1231F5: main (TestSimulationsWithParabolicBoxDomainPdeModifier.cpp:18) +==25682== +==25682== Open file descriptor 113: +==25682== +==25682== +==25682== Open file descriptor 110: +==25682== +==25682== +==25682== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt +==25682== +==25682== +==25682== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25682== +==25682== +==25682== +==25682== HEAP SUMMARY: +==25682== in use at exit: 618,281 bytes in 8,235 blocks +==25682== total heap usage: 4,507,752 allocs, 4,499,517 frees, 1,826,815,704 bytes allocated +==25682== +==25682== LEAK SUMMARY: +==25682== definitely lost: 0 bytes in 0 blocks +==25682== indirectly lost: 0 bytes in 0 blocks +==25682== possibly lost: 0 bytes in 0 blocks +==25682== still reachable: 56 bytes in 3 blocks +==25682== suppressed: 618,225 bytes in 8,232 blocks +==25682== Reachable blocks (those to which a pointer was found) are not shown. +==25682== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25682== +==25682== For lists of detected and suppressed errors, rerun with: -s +==25682== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..cdd6bc4e0 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25720== Memcheck, a memory error detector +==25720== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25720== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25720== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithParabolicGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25720== Parent PID: 24048 +==25720== +==25720== +==25720== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25720== Open file descriptor 12: +==25720== at 0x1104D07D: pipe (pipe.c:29) +==25720== by 0x196AC07D: ??? +==25720== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25720== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25720== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25720== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25720== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25720== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25720== by 0x128F89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25720== by 0x123EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25720== by 0x1269CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25720== by 0x12686A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25720== by 0x126F01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25720== by 0x1222D5: main (TestSimulationsWithParabolicGrowingDomainPdeModifier.cpp:19) +==25720== +==25720== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25720== at 0x11051A1C: __open_nocancel (open64_nocancel.c:39) +==25720== by 0x10FD5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25720== by 0x10852822: ??? +==25720== by 0x1085296F: ??? +==25720== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25720== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25720== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25720== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25720== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25720== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25720== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25720== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25720== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25720== by 0x128F89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25720== by 0x123EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25720== by 0x1269CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25720== by 0x12686A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25720== by 0x126F01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25720== by 0x1222D5: main (TestSimulationsWithParabolicGrowingDomainPdeModifier.cpp:19) +==25720== +==25720== Open file descriptor 113: +==25720== +==25720== +==25720== Open file descriptor 110: +==25720== +==25720== +==25720== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt +==25720== +==25720== +==25720== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25720== +==25720== +==25720== +==25720== HEAP SUMMARY: +==25720== in use at exit: 618,281 bytes in 8,235 blocks +==25720== total heap usage: 5,580,604 allocs, 5,572,369 frees, 1,885,911,723 bytes allocated +==25720== +==25720== LEAK SUMMARY: +==25720== definitely lost: 0 bytes in 0 blocks +==25720== indirectly lost: 0 bytes in 0 blocks +==25720== possibly lost: 0 bytes in 0 blocks +==25720== still reachable: 56 bytes in 3 blocks +==25720== suppressed: 618,225 bytes in 8,232 blocks +==25720== Reachable blocks (those to which a pointer was found) are not shown. +==25720== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25720== +==25720== For lists of detected and suppressed errors, rerun with: -s +==25720== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestSingleOdeWntCellCycleModel_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSingleOdeWntCellCycleModel_valgrind.txt new file mode 100644 index 000000000..dc13450b3 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSingleOdeWntCellCycleModel_valgrind.txt @@ -0,0 +1,73 @@ +==40396== Memcheck, a memory error detector +==40396== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40396== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40396== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSingleOdeWntCellCycleModel -malloc_debug -malloc_dump -memory_info +==40396== Parent PID: 24048 +==40396== +==40396== +==40396== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40396== Open file descriptor 12: +==40396== at 0x1095707D: pipe (pipe.c:29) +==40396== by 0x1B36D07D: ??? +==40396== by 0x154C04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40396== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40396== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40396== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40396== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40396== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40396== by 0x18BB23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40396== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40396== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40396== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40396== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40396== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) +==40396== +==40396== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40396== at 0x1095BA1C: __open_nocancel (open64_nocancel.c:39) +==40396== by 0x108DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40396== by 0xED9C822: ??? +==40396== by 0xED9C96F: ??? +==40396== by 0x155656DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40396== by 0x15565938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40396== by 0x1551B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40396== by 0x154C02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40396== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40396== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40396== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40396== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40396== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40396== by 0x18BB23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40396== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40396== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40396== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40396== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40396== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) +==40396== +==40396== Open file descriptor 113: +==40396== +==40396== +==40396== Open file descriptor 110: +==40396== +==40396== +==40396== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSingleOdeWntCellCycleModel_valgrind.txt +==40396== +==40396== +==40396== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40396== +==40396== +==40396== +==40396== HEAP SUMMARY: +==40396== in use at exit: 618,514 bytes in 8,241 blocks +==40396== total heap usage: 263,090 allocs, 254,849 frees, 1,357,295,125 bytes allocated +==40396== +==40396== LEAK SUMMARY: +==40396== definitely lost: 0 bytes in 0 blocks +==40396== indirectly lost: 0 bytes in 0 blocks +==40396== possibly lost: 0 bytes in 0 blocks +==40396== still reachable: 200 bytes in 5 blocks +==40396== suppressed: 618,314 bytes in 8,236 blocks +==40396== Reachable blocks (those to which a pointer was found) are not shown. +==40396== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40396== +==40396== For lists of detected and suppressed errors, rerun with: -s +==40396== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestSloughingCellKillers_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSloughingCellKillers_valgrind.txt new file mode 100644 index 000000000..cd88cace5 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSloughingCellKillers_valgrind.txt @@ -0,0 +1,73 @@ +==40535== Memcheck, a memory error detector +==40535== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40535== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40535== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSloughingCellKillers -malloc_debug -malloc_dump -memory_info +==40535== Parent PID: 24048 +==40535== +==40535== +==40535== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40535== Open file descriptor 12: +==40535== at 0x1269907D: pipe (pipe.c:29) +==40535== by 0x1B36D07D: ??? +==40535== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40535== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40535== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40535== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40535== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40535== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40535== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40535== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40535== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40535== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40535== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40535== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) +==40535== +==40535== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40535== at 0x1269DA1C: __open_nocancel (open64_nocancel.c:39) +==40535== by 0x12621BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40535== by 0x109F7822: ??? +==40535== by 0x109F796F: ??? +==40535== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40535== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40535== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40535== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40535== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40535== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40535== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40535== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40535== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40535== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40535== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40535== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40535== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40535== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40535== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) +==40535== +==40535== Open file descriptor 113: +==40535== +==40535== +==40535== Open file descriptor 110: +==40535== +==40535== +==40535== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSloughingCellKillers_valgrind.txt +==40535== +==40535== +==40535== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40535== +==40535== +==40535== +==40535== HEAP SUMMARY: +==40535== in use at exit: 618,370 bytes in 8,239 blocks +==40535== total heap usage: 100,672 allocs, 92,433 frees, 1,342,469,975 bytes allocated +==40535== +==40535== LEAK SUMMARY: +==40535== definitely lost: 0 bytes in 0 blocks +==40535== indirectly lost: 0 bytes in 0 blocks +==40535== possibly lost: 0 bytes in 0 blocks +==40535== still reachable: 56 bytes in 3 blocks +==40535== suppressed: 618,314 bytes in 8,236 blocks +==40535== Reachable blocks (those to which a pointer was found) are not shown. +==40535== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40535== +==40535== For lists of detected and suppressed errors, rerun with: -s +==40535== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestSolveLaplacianWithQuadratics_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSolveLaplacianWithQuadratics_valgrind.txt new file mode 100644 index 000000000..57af3ac64 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSolveLaplacianWithQuadratics_valgrind.txt @@ -0,0 +1,73 @@ +==25111== Memcheck, a memory error detector +==25111== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25111== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25111== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolveLaplacianWithQuadratics -malloc_debug -malloc_dump -memory_info +==25111== Parent PID: 24048 +==25111== +==25111== +==25111== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25111== Open file descriptor 12: +==25111== at 0x84E707D: pipe (pipe.c:29) +==25111== by 0x104D507D: ??? +==25111== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25111== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25111== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25111== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25111== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25111== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25111== by 0x15D32E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25111== by 0x1582D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25111== by 0x15AFE6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25111== by 0x15AEE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25111== by 0x15B4F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25111== by 0x156AD5: main (TestSolveLaplacianWithQuadratics.cpp:18) +==25111== +==25111== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25111== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25111== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25111== by 0x7D3C822: ??? +==25111== by 0x7D3C96F: ??? +==25111== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25111== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25111== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25111== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25111== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25111== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25111== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25111== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25111== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25111== by 0x15D32E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25111== by 0x1582D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25111== by 0x15AFE6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25111== by 0x15AEE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25111== by 0x15B4F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25111== by 0x156AD5: main (TestSolveLaplacianWithQuadratics.cpp:18) +==25111== +==25111== Open file descriptor 113: +==25111== +==25111== +==25111== Open file descriptor 110: +==25111== +==25111== +==25111== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolveLaplacianWithQuadratics_valgrind.txt +==25111== +==25111== +==25111== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25111== +==25111== +==25111== +==25111== HEAP SUMMARY: +==25111== in use at exit: 618,258 bytes in 8,238 blocks +==25111== total heap usage: 317,732 allocs, 309,494 frees, 1,357,888,407 bytes allocated +==25111== +==25111== LEAK SUMMARY: +==25111== definitely lost: 0 bytes in 0 blocks +==25111== indirectly lost: 0 bytes in 0 blocks +==25111== possibly lost: 0 bytes in 0 blocks +==25111== still reachable: 24 bytes in 2 blocks +==25111== suppressed: 618,234 bytes in 8,236 blocks +==25111== Reachable blocks (those to which a pointer was found) are not shown. +==25111== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25111== +==25111== For lists of detected and suppressed errors, rerun with: -s +==25111== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestSolvingCoupledPdes_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSolvingCoupledPdes_valgrind.txt new file mode 100644 index 000000000..b3d04af26 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSolvingCoupledPdes_valgrind.txt @@ -0,0 +1,73 @@ +==25109== Memcheck, a memory error detector +==25109== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25109== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25109== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolvingCoupledPdes -malloc_debug -malloc_dump -memory_info +==25109== Parent PID: 24048 +==25109== +==25109== +==25109== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25109== Open file descriptor 12: +==25109== at 0x84E707D: pipe (pipe.c:29) +==25109== by 0x104D507D: ??? +==25109== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25109== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25109== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25109== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25109== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25109== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25109== by 0x143C06: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25109== by 0x13ECB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25109== by 0x1418BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25109== by 0x1417B9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25109== by 0x141DCD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25109== by 0x13D4B5: main (TestSolvingCoupledPdes.cpp:18) +==25109== +==25109== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25109== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25109== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25109== by 0x7D3C822: ??? +==25109== by 0x7D3C96F: ??? +==25109== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25109== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25109== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25109== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25109== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25109== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25109== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25109== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25109== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25109== by 0x143C06: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25109== by 0x13ECB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25109== by 0x1418BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25109== by 0x1417B9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25109== by 0x141DCD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25109== by 0x13D4B5: main (TestSolvingCoupledPdes.cpp:18) +==25109== +==25109== Open file descriptor 113: +==25109== +==25109== +==25109== Open file descriptor 110: +==25109== +==25109== +==25109== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingCoupledPdes_valgrind.txt +==25109== +==25109== +==25109== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25109== +==25109== +==25109== +==25109== HEAP SUMMARY: +==25109== in use at exit: 618,258 bytes in 8,238 blocks +==25109== total heap usage: 362,665 allocs, 354,427 frees, 1,353,739,510 bytes allocated +==25109== +==25109== LEAK SUMMARY: +==25109== definitely lost: 0 bytes in 0 blocks +==25109== indirectly lost: 0 bytes in 0 blocks +==25109== possibly lost: 0 bytes in 0 blocks +==25109== still reachable: 24 bytes in 2 blocks +==25109== suppressed: 618,234 bytes in 8,236 blocks +==25109== Reachable blocks (those to which a pointer was found) are not shown. +==25109== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25109== +==25109== For lists of detected and suppressed errors, rerun with: -s +==25109== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestSolvingNonlinearPdesTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSolvingNonlinearPdesTutorial_valgrind.txt new file mode 100644 index 000000000..5d8e00029 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSolvingNonlinearPdesTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==25131== Memcheck, a memory error detector +==25131== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25131== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25131== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolvingNonlinearPdesTutorial -malloc_debug -malloc_dump -memory_info +==25131== Parent PID: 24048 +==25131== +==25131== +==25131== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25131== Open file descriptor 12: +==25131== at 0x84E707D: pipe (pipe.c:29) +==25131== by 0x104D507D: ??? +==25131== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25131== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25131== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25131== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25131== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25131== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25131== by 0x1389EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25131== by 0x133AFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25131== by 0x1366A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25131== by 0x1365A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25131== by 0x136BB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25131== by 0x1322D5: main (TestSolvingNonlinearPdesTutorial.cpp:18) +==25131== +==25131== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25131== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25131== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25131== by 0x7D3C822: ??? +==25131== by 0x7D3C96F: ??? +==25131== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25131== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25131== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25131== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25131== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25131== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25131== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25131== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25131== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25131== by 0x1389EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25131== by 0x133AFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25131== by 0x1366A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25131== by 0x1365A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25131== by 0x136BB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25131== by 0x1322D5: main (TestSolvingNonlinearPdesTutorial.cpp:18) +==25131== +==25131== Open file descriptor 113: +==25131== +==25131== +==25131== Open file descriptor 110: +==25131== +==25131== +==25131== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingNonlinearPdesTutorial_valgrind.txt +==25131== +==25131== +==25131== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25131== +==25131== +==25131== +==25131== HEAP SUMMARY: +==25131== in use at exit: 618,258 bytes in 8,238 blocks +==25131== total heap usage: 243,597 allocs, 235,359 frees, 1,341,284,853 bytes allocated +==25131== +==25131== LEAK SUMMARY: +==25131== definitely lost: 0 bytes in 0 blocks +==25131== indirectly lost: 0 bytes in 0 blocks +==25131== possibly lost: 0 bytes in 0 blocks +==25131== still reachable: 24 bytes in 2 blocks +==25131== suppressed: 618,234 bytes in 8,236 blocks +==25131== Reachable blocks (those to which a pointer was found) are not shown. +==25131== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25131== +==25131== For lists of detected and suppressed errors, rerun with: -s +==25131== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestSolvingOdesTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSolvingOdesTutorial_valgrind.txt new file mode 100644 index 000000000..5dd6bf08e --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSolvingOdesTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==25027== Memcheck, a memory error detector +==25027== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25027== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25027== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestSolvingOdesTutorial -malloc_debug -malloc_dump -memory_info +==25027== Parent PID: 24048 +==25027== +==25027== +==25027== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25027== Open file descriptor 12: +==25027== at 0x63C507D: pipe (pipe.c:29) +==25027== by 0xB1E407D: ??? +==25027== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25027== by 0x5FFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25027== by 0x5F93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25027== by 0x4C65D38: PetscInitialize (pinit.c:924) +==25027== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25027== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25027== by 0x118D39: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25027== by 0x114693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25027== by 0x1169AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25027== by 0x1168A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25027== by 0x116EBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25027== by 0x1128D5: main (TestSolvingOdesTutorial.cpp:18) +==25027== +==25027== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25027== at 0x63C9A1C: __open_nocancel (open64_nocancel.c:39) +==25027== by 0x634DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25027== by 0x5EF5822: ??? +==25027== by 0x5EF596F: ??? +==25027== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25027== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25027== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25027== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25027== by 0x5FFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25027== by 0x5F93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25027== by 0x4C65D38: PetscInitialize (pinit.c:924) +==25027== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25027== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25027== by 0x118D39: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25027== by 0x114693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25027== by 0x1169AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25027== by 0x1168A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25027== by 0x116EBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25027== by 0x1128D5: main (TestSolvingOdesTutorial.cpp:18) +==25027== +==25027== Open file descriptor 113: +==25027== +==25027== +==25027== Open file descriptor 110: +==25027== +==25027== +==25027== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingOdesTutorial_valgrind.txt +==25027== +==25027== +==25027== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25027== +==25027== +==25027== +==25027== HEAP SUMMARY: +==25027== in use at exit: 617,906 bytes in 8,238 blocks +==25027== total heap usage: 45,183 allocs, 36,945 frees, 1,338,244,195 bytes allocated +==25027== +==25027== LEAK SUMMARY: +==25027== definitely lost: 0 bytes in 0 blocks +==25027== indirectly lost: 0 bytes in 0 blocks +==25027== possibly lost: 0 bytes in 0 blocks +==25027== still reachable: 24 bytes in 2 blocks +==25027== suppressed: 617,882 bytes in 8,236 blocks +==25027== Reachable blocks (those to which a pointer was found) are not shown. +==25027== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25027== +==25027== For lists of detected and suppressed errors, rerun with: -s +==25027== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestSolvingStiffOdeSystems_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSolvingStiffOdeSystems_valgrind.txt new file mode 100644 index 000000000..29b19f011 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSolvingStiffOdeSystems_valgrind.txt @@ -0,0 +1,73 @@ +==25012== Memcheck, a memory error detector +==25012== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25012== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25012== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestSolvingStiffOdeSystems -malloc_debug -malloc_dump -memory_info +==25012== Parent PID: 24048 +==25012== +==25012== +==25012== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25012== Open file descriptor 12: +==25012== at 0x4F1007D: pipe (pipe.c:29) +==25012== by 0xB1E607D: ??? +==25012== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25012== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25012== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25012== by 0x5308D38: PetscInitialize (pinit.c:924) +==25012== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25012== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25012== by 0x118D00: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25012== by 0x114431: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25012== by 0x1167AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25012== by 0x1166A9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25012== by 0x116CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25012== by 0x112835: main (TestSolvingStiffOdeSystems.cpp:18) +==25012== +==25012== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25012== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39) +==25012== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25012== by 0x4B77822: ??? +==25012== by 0x4B7796F: ??? +==25012== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25012== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25012== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25012== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25012== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25012== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25012== by 0x5308D38: PetscInitialize (pinit.c:924) +==25012== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25012== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25012== by 0x118D00: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25012== by 0x114431: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25012== by 0x1167AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25012== by 0x1166A9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25012== by 0x116CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25012== by 0x112835: main (TestSolvingStiffOdeSystems.cpp:18) +==25012== +==25012== Open file descriptor 113: +==25012== +==25012== +==25012== Open file descriptor 110: +==25012== +==25012== +==25012== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingStiffOdeSystems_valgrind.txt +==25012== +==25012== +==25012== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25012== +==25012== +==25012== +==25012== HEAP SUMMARY: +==25012== in use at exit: 617,906 bytes in 8,238 blocks +==25012== total heap usage: 47,082 allocs, 38,844 frees, 1,338,227,820 bytes allocated +==25012== +==25012== LEAK SUMMARY: +==25012== definitely lost: 0 bytes in 0 blocks +==25012== indirectly lost: 0 bytes in 0 blocks +==25012== possibly lost: 0 bytes in 0 blocks +==25012== still reachable: 24 bytes in 2 blocks +==25012== suppressed: 617,882 bytes in 8,236 blocks +==25012== Reachable blocks (those to which a pointer was found) are not shown. +==25012== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25012== +==25012== For lists of detected and suppressed errors, rerun with: -s +==25012== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestSpiralWaveAndPhase_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSpiralWaveAndPhase_valgrind.txt new file mode 100644 index 000000000..430c71bbf --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSpiralWaveAndPhase_valgrind.txt @@ -0,0 +1,73 @@ +==43588== Memcheck, a memory error detector +==43588== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43588== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43588== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestSpiralWaveAndPhase -malloc_debug -malloc_dump -memory_info +==43588== Parent PID: 24048 +==43588== +==43588== +==43588== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43588== Open file descriptor 12: +==43588== at 0x84CB07D: pipe (pipe.c:29) +==43588== by 0x104D507D: ??? +==43588== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43588== by 0x8B4E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43588== by 0x8AE7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43588== by 0x6A90D38: PetscInitialize (pinit.c:924) +==43588== by 0x69671D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43588== by 0x6967227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43588== by 0x119000: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43588== by 0x1147B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43588== by 0x116FAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43588== by 0x116EA7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43588== by 0x1174BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43588== by 0x112FB5: main (TestSpiralWaveAndPhase.cpp:18) +==43588== +==43588== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43588== at 0x84CFA1C: __open_nocancel (open64_nocancel.c:39) +==43588== by 0x8453BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43588== by 0x7D20822: ??? +==43588== by 0x7D2096F: ??? +==43588== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43588== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43588== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43588== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43588== by 0x8B4E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43588== by 0x8AE7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43588== by 0x6A90D38: PetscInitialize (pinit.c:924) +==43588== by 0x69671D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43588== by 0x6967227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43588== by 0x119000: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43588== by 0x1147B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43588== by 0x116FAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43588== by 0x116EA7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43588== by 0x1174BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43588== by 0x112FB5: main (TestSpiralWaveAndPhase.cpp:18) +==43588== +==43588== Open file descriptor 113: +==43588== +==43588== +==43588== Open file descriptor 110: +==43588== +==43588== +==43588== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSpiralWaveAndPhase_valgrind.txt +==43588== +==43588== +==43588== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43588== +==43588== +==43588== +==43588== HEAP SUMMARY: +==43588== in use at exit: 618,665 bytes in 8,244 blocks +==43588== total heap usage: 4,351,541 allocs, 4,343,297 frees, 1,902,290,538 bytes allocated +==43588== +==43588== LEAK SUMMARY: +==43588== definitely lost: 0 bytes in 0 blocks +==43588== indirectly lost: 0 bytes in 0 blocks +==43588== possibly lost: 0 bytes in 0 blocks +==43588== still reachable: 24 bytes in 2 blocks +==43588== suppressed: 618,641 bytes in 8,242 blocks +==43588== Reachable blocks (those to which a pointer was found) are not shown. +==43588== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43588== +==43588== For lists of detected and suppressed errors, rerun with: -s +==43588== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 31) diff --git a/log-files/2024-09-23_05-40-48/TestSteadyStateRunner_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSteadyStateRunner_valgrind.txt new file mode 100644 index 000000000..ff9442904 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSteadyStateRunner_valgrind.txt @@ -0,0 +1,73 @@ +==42778== Memcheck, a memory error detector +==42778== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42778== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42778== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestSteadyStateRunner -malloc_debug -malloc_dump -memory_info +==42778== Parent PID: 24048 +==42778== +==42778== +==42778== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42778== Open file descriptor 12: +==42778== at 0x9C6507D: pipe (pipe.c:29) +==42778== by 0x1432407D: ??? +==42778== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42778== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42778== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42778== by 0x8505D38: PetscInitialize (pinit.c:924) +==42778== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42778== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42778== by 0x115FF5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42778== by 0x1114AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42778== by 0x113CD0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42778== by 0x113B70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42778== by 0x114207: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42778== by 0x10F8D5: main (TestSteadyStateRunner.cpp:19) +==42778== +==42778== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42778== at 0x9C69A1C: __open_nocancel (open64_nocancel.c:39) +==42778== by 0x9BEDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42778== by 0x9795822: ??? +==42778== by 0x979596F: ??? +==42778== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42778== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42778== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42778== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42778== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42778== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42778== by 0x8505D38: PetscInitialize (pinit.c:924) +==42778== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42778== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42778== by 0x115FF5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42778== by 0x1114AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42778== by 0x113CD0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42778== by 0x113B70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42778== by 0x114207: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42778== by 0x10F8D5: main (TestSteadyStateRunner.cpp:19) +==42778== +==42778== Open file descriptor 113: +==42778== +==42778== +==42778== Open file descriptor 110: +==42778== +==42778== +==42778== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSteadyStateRunner_valgrind.txt +==42778== +==42778== +==42778== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42778== +==42778== +==42778== +==42778== HEAP SUMMARY: +==42778== in use at exit: 618,265 bytes in 8,234 blocks +==42778== total heap usage: 50,554 allocs, 42,320 frees, 1,338,885,209 bytes allocated +==42778== +==42778== LEAK SUMMARY: +==42778== definitely lost: 0 bytes in 0 blocks +==42778== indirectly lost: 0 bytes in 0 blocks +==42778== possibly lost: 0 bytes in 0 blocks +==42778== still reachable: 24 bytes in 2 blocks +==42778== suppressed: 618,241 bytes in 8,232 blocks +==42778== Reachable blocks (those to which a pointer was found) are not shown. +==42778== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42778== +==42778== For lists of detected and suppressed errors, rerun with: -s +==42778== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestStepSizeException_valgrind.txt b/log-files/2024-09-23_05-40-48/TestStepSizeException_valgrind.txt new file mode 100644 index 000000000..d32476af5 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestStepSizeException_valgrind.txt @@ -0,0 +1,73 @@ +==39703== Memcheck, a memory error detector +==39703== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39703== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39703== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestStepSizeException -malloc_debug -malloc_dump -memory_info +==39703== Parent PID: 24048 +==39703== +==39703== +==39703== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39703== Open file descriptor 12: +==39703== at 0x4CB407D: pipe (pipe.c:29) +==39703== by 0xAEA507D: ??? +==39703== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39703== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39703== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39703== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==39703== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39703== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39703== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39703== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39703== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39703== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39703== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39703== by 0x10D735: main (TestStepSizeException.cpp:19) +==39703== +==39703== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39703== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==39703== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39703== by 0x4935822: ??? +==39703== by 0x493596F: ??? +==39703== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39703== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39703== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39703== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39703== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39703== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39703== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==39703== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39703== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39703== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39703== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39703== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39703== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39703== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39703== by 0x10D735: main (TestStepSizeException.cpp:19) +==39703== +==39703== Open file descriptor 113: +==39703== +==39703== +==39703== Open file descriptor 110: +==39703== +==39703== +==39703== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStepSizeException_valgrind.txt +==39703== +==39703== +==39703== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39703== +==39703== +==39703== +==39703== HEAP SUMMARY: +==39703== in use at exit: 617,842 bytes in 8,238 blocks +==39703== total heap usage: 44,915 allocs, 36,677 frees, 1,338,160,029 bytes allocated +==39703== +==39703== LEAK SUMMARY: +==39703== definitely lost: 0 bytes in 0 blocks +==39703== indirectly lost: 0 bytes in 0 blocks +==39703== possibly lost: 0 bytes in 0 blocks +==39703== still reachable: 24 bytes in 2 blocks +==39703== suppressed: 617,818 bytes in 8,236 blocks +==39703== Reachable blocks (those to which a pointer was found) are not shown. +==39703== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39703== +==39703== For lists of detected and suppressed errors, rerun with: -s +==39703== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestStimulusBoundaryCondition_valgrind.txt b/log-files/2024-09-23_05-40-48/TestStimulusBoundaryCondition_valgrind.txt new file mode 100644 index 000000000..4c199cb17 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestStimulusBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==43641== Memcheck, a memory error detector +==43641== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43641== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43641== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulusBoundaryCondition -malloc_debug -malloc_dump -memory_info +==43641== Parent PID: 24048 +==43641== +==43641== +==43641== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43641== Open file descriptor 12: +==43641== at 0xA56407D: pipe (pipe.c:29) +==43641== by 0x1432407D: ??? +==43641== by 0xFADE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43641== by 0xBC5F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43641== by 0xBBF8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43641== by 0xA8EFD38: PetscInitialize (pinit.c:924) +==43641== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43641== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43641== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43641== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43641== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43641== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43641== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43641== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) +==43641== +==43641== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43641== at 0xA568A1C: __open_nocancel (open64_nocancel.c:39) +==43641== by 0xA4ECBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43641== by 0xA1CD822: ??? +==43641== by 0xA1CD96F: ??? +==43641== by 0xFB836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43641== by 0xFB83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43641== by 0xFB39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43641== by 0xFADE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43641== by 0xBC5F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43641== by 0xBBF8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43641== by 0xA8EFD38: PetscInitialize (pinit.c:924) +==43641== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43641== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43641== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43641== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43641== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43641== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43641== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43641== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) +==43641== +==43641== Open file descriptor 113: +==43641== +==43641== +==43641== Open file descriptor 110: +==43641== +==43641== +==43641== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulusBoundaryCondition_valgrind.txt +==43641== +==43641== +==43641== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43641== +==43641== +==43641== +==43641== HEAP SUMMARY: +==43641== in use at exit: 618,338 bytes in 8,238 blocks +==43641== total heap usage: 48,815 allocs, 40,577 frees, 1,338,522,975 bytes allocated +==43641== +==43641== LEAK SUMMARY: +==43641== definitely lost: 0 bytes in 0 blocks +==43641== indirectly lost: 0 bytes in 0 blocks +==43641== possibly lost: 0 bytes in 0 blocks +==43641== still reachable: 24 bytes in 2 blocks +==43641== suppressed: 618,314 bytes in 8,236 blocks +==43641== Reachable blocks (those to which a pointer was found) are not shown. +==43641== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43641== +==43641== For lists of detected and suppressed errors, rerun with: -s +==43641== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestStimulusFactory_valgrind.txt b/log-files/2024-09-23_05-40-48/TestStimulusFactory_valgrind.txt new file mode 100644 index 000000000..34df7b361 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestStimulusFactory_valgrind.txt @@ -0,0 +1,73 @@ +==41338== Memcheck, a memory error detector +==41338== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41338== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41338== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulusFactory -malloc_debug -malloc_dump -memory_info +==41338== Parent PID: 24048 +==41338== +==41338== +==41338== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41338== Open file descriptor 12: +==41338== at 0xA7C307D: pipe (pipe.c:29) +==41338== by 0x1432407D: ??? +==41338== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41338== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41338== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41338== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==41338== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41338== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41338== by 0x122E20: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41338== by 0x11DDCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41338== by 0x120996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41338== by 0x120836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41338== by 0x120ECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41338== by 0x11C1F5: main (TestStimulusFactory.cpp:19) +==41338== +==41338== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41338== at 0xA7C7A1C: __open_nocancel (open64_nocancel.c:39) +==41338== by 0xA74BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41338== by 0xA0E5822: ??? +==41338== by 0xA0E596F: ??? +==41338== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41338== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41338== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41338== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41338== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41338== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41338== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==41338== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41338== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41338== by 0x122E20: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41338== by 0x11DDCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41338== by 0x120996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41338== by 0x120836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41338== by 0x120ECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41338== by 0x11C1F5: main (TestStimulusFactory.cpp:19) +==41338== +==41338== Open file descriptor 113: +==41338== +==41338== +==41338== Open file descriptor 110: +==41338== +==41338== +==41338== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulusFactory_valgrind.txt +==41338== +==41338== +==41338== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41338== +==41338== +==41338== +==41338== HEAP SUMMARY: +==41338== in use at exit: 618,818 bytes in 8,248 blocks +==41338== total heap usage: 180,616 allocs, 172,368 frees, 1,362,117,315 bytes allocated +==41338== +==41338== LEAK SUMMARY: +==41338== definitely lost: 0 bytes in 0 blocks +==41338== indirectly lost: 0 bytes in 0 blocks +==41338== possibly lost: 0 bytes in 0 blocks +==41338== still reachable: 24 bytes in 2 blocks +==41338== suppressed: 618,794 bytes in 8,246 blocks +==41338== Reachable blocks (those to which a pointer was found) are not shown. +==41338== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41338== +==41338== For lists of detected and suppressed errors, rerun with: -s +==41338== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 38) diff --git a/log-files/2024-09-23_05-40-48/TestStimulus_valgrind.txt b/log-files/2024-09-23_05-40-48/TestStimulus_valgrind.txt new file mode 100644 index 000000000..9f5e533f0 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestStimulus_valgrind.txt @@ -0,0 +1,73 @@ +==43634== Memcheck, a memory error detector +==43634== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43634== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43634== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulus -malloc_debug -malloc_dump -memory_info +==43634== Parent PID: 24048 +==43634== +==43634== +==43634== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43634== Open file descriptor 12: +==43634== at 0x9B4C07D: pipe (pipe.c:29) +==43634== by 0x1432407D: ??? +==43634== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43634== by 0x9698418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43634== by 0x9631D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43634== by 0x8328D38: PetscInitialize (pinit.c:924) +==43634== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43634== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43634== by 0x123427: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43634== by 0x11E823: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43634== by 0x120E66: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43634== by 0x120D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43634== by 0x121375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43634== by 0x11D025: main (TestStimulus.cpp:18) +==43634== +==43634== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43634== at 0x9B50A1C: __open_nocancel (open64_nocancel.c:39) +==43634== by 0x9AD4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43634== by 0x81D3822: ??? +==43634== by 0x81D396F: ??? +==43634== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43634== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43634== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43634== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43634== by 0x9698418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43634== by 0x9631D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43634== by 0x8328D38: PetscInitialize (pinit.c:924) +==43634== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43634== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43634== by 0x123427: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43634== by 0x11E823: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43634== by 0x120E66: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43634== by 0x120D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43634== by 0x121375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43634== by 0x11D025: main (TestStimulus.cpp:18) +==43634== +==43634== Open file descriptor 113: +==43634== +==43634== +==43634== Open file descriptor 110: +==43634== +==43634== +==43634== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulus_valgrind.txt +==43634== +==43634== +==43634== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43634== +==43634== +==43634== +==43634== HEAP SUMMARY: +==43634== in use at exit: 618,338 bytes in 8,238 blocks +==43634== total heap usage: 48,980 allocs, 40,742 frees, 1,338,552,181 bytes allocated +==43634== +==43634== LEAK SUMMARY: +==43634== definitely lost: 0 bytes in 0 blocks +==43634== indirectly lost: 0 bytes in 0 blocks +==43634== possibly lost: 0 bytes in 0 blocks +==43634== still reachable: 24 bytes in 2 blocks +==43634== suppressed: 618,314 bytes in 8,236 blocks +==43634== Reachable blocks (those to which a pointer was found) are not shown. +==43634== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43634== +==43634== For lists of detected and suppressed errors, rerun with: -s +==43634== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestStokesFlowAssembler_valgrind.txt b/log-files/2024-09-23_05-40-48/TestStokesFlowAssembler_valgrind.txt new file mode 100644 index 000000000..1c8afc4e5 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestStokesFlowAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25397== Memcheck, a memory error detector +==25397== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25397== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25397== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestStokesFlowAssembler -malloc_debug -malloc_dump -memory_info +==25397== Parent PID: 24048 +==25397== +==25397== +==25397== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25397== Open file descriptor 12: +==25397== at 0x866707D: pipe (pipe.c:29) +==25397== by 0x106D807D: ??? +==25397== by 0xC4EC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25397== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25397== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25397== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25397== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25397== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25397== by 0x12CFE0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25397== by 0x128839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25397== by 0x12AC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25397== by 0x12AB53: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25397== by 0x12B167: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25397== by 0x126EB5: main (TestStokesFlowAssembler.cpp:18) +==25397== +==25397== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25397== at 0x866BA1C: __open_nocancel (open64_nocancel.c:39) +==25397== by 0x85EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25397== by 0x7EBC822: ??? +==25397== by 0x7EBC96F: ??? +==25397== by 0xC5916DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25397== by 0xC591938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25397== by 0xC547922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25397== by 0xC4EC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25397== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25397== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25397== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25397== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25397== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25397== by 0x12CFE0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25397== by 0x128839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25397== by 0x12AC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25397== by 0x12AB53: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25397== by 0x12B167: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25397== by 0x126EB5: main (TestStokesFlowAssembler.cpp:18) +==25397== +==25397== Open file descriptor 113: +==25397== +==25397== +==25397== Open file descriptor 110: +==25397== +==25397== +==25397== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStokesFlowAssembler_valgrind.txt +==25397== +==25397== +==25397== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25397== +==25397== +==25397== +==25397== HEAP SUMMARY: +==25397== in use at exit: 618,274 bytes in 8,238 blocks +==25397== total heap usage: 48,398 allocs, 40,160 frees, 1,338,713,544 bytes allocated +==25397== +==25397== LEAK SUMMARY: +==25397== definitely lost: 0 bytes in 0 blocks +==25397== indirectly lost: 0 bytes in 0 blocks +==25397== possibly lost: 0 bytes in 0 blocks +==25397== still reachable: 24 bytes in 2 blocks +==25397== suppressed: 618,250 bytes in 8,236 blocks +==25397== Reachable blocks (those to which a pointer was found) are not shown. +==25397== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25397== +==25397== For lists of detected and suppressed errors, rerun with: -s +==25397== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestStokesFlowSolver_valgrind.txt b/log-files/2024-09-23_05-40-48/TestStokesFlowSolver_valgrind.txt new file mode 100644 index 000000000..05aae6274 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestStokesFlowSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25405== Memcheck, a memory error detector +==25405== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25405== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25405== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestStokesFlowSolver -malloc_debug -malloc_dump -memory_info +==25405== Parent PID: 24048 +==25405== +==25405== +==25405== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25405== Open file descriptor 12: +==25405== at 0x866707D: pipe (pipe.c:29) +==25405== by 0x106D807D: ??? +==25405== by 0xC4EC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25405== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25405== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25405== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25405== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25405== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25405== by 0x158044: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25405== by 0x1529D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25405== by 0x155C4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25405== by 0x155B49: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25405== by 0x15615D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25405== by 0x1511D5: main (TestStokesFlowSolver.cpp:18) +==25405== +==25405== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25405== at 0x866BA1C: __open_nocancel (open64_nocancel.c:39) +==25405== by 0x85EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25405== by 0x7EBC822: ??? +==25405== by 0x7EBC96F: ??? +==25405== by 0xC5916DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25405== by 0xC591938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25405== by 0xC547922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25405== by 0xC4EC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25405== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25405== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25405== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25405== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25405== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25405== by 0x158044: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25405== by 0x1529D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25405== by 0x155C4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25405== by 0x155B49: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25405== by 0x15615D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25405== by 0x1511D5: main (TestStokesFlowSolver.cpp:18) +==25405== +==25405== Open file descriptor 113: +==25405== +==25405== +==25405== Open file descriptor 110: +==25405== +==25405== +==25405== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStokesFlowSolver_valgrind.txt +==25405== +==25405== +==25405== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25405== +==25405== +==25405== +==25405== HEAP SUMMARY: +==25405== in use at exit: 618,201 bytes in 8,234 blocks +==25405== total heap usage: 557,703 allocs, 549,469 frees, 1,530,978,063 bytes allocated +==25405== +==25405== LEAK SUMMARY: +==25405== definitely lost: 0 bytes in 0 blocks +==25405== indirectly lost: 0 bytes in 0 blocks +==25405== possibly lost: 0 bytes in 0 blocks +==25405== still reachable: 24 bytes in 2 blocks +==25405== suppressed: 618,177 bytes in 8,232 blocks +==25405== Reachable blocks (those to which a pointer was found) are not shown. +==25405== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25405== +==25405== For lists of detected and suppressed errors, rerun with: -s +==25405== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-23_05-40-48/TestStreeterFibreGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestStreeterFibreGenerator_valgrind.txt new file mode 100644 index 000000000..884de5686 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestStreeterFibreGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==41383== Memcheck, a memory error detector +==41383== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41383== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41383== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStreeterFibreGenerator -malloc_debug -malloc_dump -memory_info +==41383== Parent PID: 24048 +==41383== +==41383== +==41383== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41383== Open file descriptor 12: +==41383== at 0xB9C307D: pipe (pipe.c:29) +==41383== by 0x1432407D: ??? +==41383== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41383== by 0xB2B1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41383== by 0xB24AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41383== by 0x9F1ED38: PetscInitialize (pinit.c:924) +==41383== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41383== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41383== by 0x11B488: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41383== by 0x11684D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41383== by 0x1192DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41383== by 0x11917C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41383== by 0x119813: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41383== by 0x114C75: main (TestStreeterFibreGenerator.cpp:19) +==41383== +==41383== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41383== at 0xB9C7A1C: __open_nocancel (open64_nocancel.c:39) +==41383== by 0xB94BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41383== by 0xB1AE822: ??? +==41383== by 0xB1AE96F: ??? +==41383== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41383== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41383== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41383== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41383== by 0xB2B1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41383== by 0xB24AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41383== by 0x9F1ED38: PetscInitialize (pinit.c:924) +==41383== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41383== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41383== by 0x11B488: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41383== by 0x11684D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41383== by 0x1192DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41383== by 0x11917C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41383== by 0x119813: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41383== by 0x114C75: main (TestStreeterFibreGenerator.cpp:19) +==41383== +==41383== Open file descriptor 113: +==41383== +==41383== +==41383== Open file descriptor 110: +==41383== +==41383== +==41383== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStreeterFibreGenerator_valgrind.txt +==41383== +==41383== +==41383== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41383== +==41383== +==41383== +==41383== HEAP SUMMARY: +==41383== in use at exit: 618,265 bytes in 8,234 blocks +==41383== total heap usage: 4,490,129 allocs, 4,481,895 frees, 1,575,790,923 bytes allocated +==41383== +==41383== LEAK SUMMARY: +==41383== definitely lost: 0 bytes in 0 blocks +==41383== indirectly lost: 0 bytes in 0 blocks +==41383== possibly lost: 0 bytes in 0 blocks +==41383== still reachable: 24 bytes in 2 blocks +==41383== suppressed: 618,241 bytes in 8,232 blocks +==41383== Reachable blocks (those to which a pointer was found) are not shown. +==41383== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41383== +==41383== For lists of detected and suppressed errors, rerun with: -s +==41383== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-23_05-40-48/TestSuperellipseGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestSuperellipseGenerator_valgrind.txt new file mode 100644 index 000000000..4c9964db6 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestSuperellipseGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24924== Memcheck, a memory error detector +==24924== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24924== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24924== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestSuperellipseGenerator -malloc_debug -malloc_dump -memory_info +==24924== Parent PID: 24048 +==24924== +==24924== +==24924== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24924== Open file descriptor 12: +==24924== at 0x7EAB07D: pipe (pipe.c:29) +==24924== by 0x100C307D: ??? +==24924== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24924== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24924== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24924== by 0x667ED38: PetscInitialize (pinit.c:924) +==24924== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24924== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24924== by 0x1163ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24924== by 0x111E13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24924== by 0x114280: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24924== by 0x11417B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24924== by 0x11478F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24924== by 0x110615: main (TestSuperellipseGenerator.cpp:18) +==24924== +==24924== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24924== at 0x7EAFA1C: __open_nocancel (open64_nocancel.c:39) +==24924== by 0x7E33BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24924== by 0x790E822: ??? +==24924== by 0x790E96F: ??? +==24924== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24924== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24924== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24924== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24924== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24924== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24924== by 0x667ED38: PetscInitialize (pinit.c:924) +==24924== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24924== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24924== by 0x1163ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24924== by 0x111E13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24924== by 0x114280: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24924== by 0x11417B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24924== by 0x11478F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24924== by 0x110615: main (TestSuperellipseGenerator.cpp:18) +==24924== +==24924== Open file descriptor 113: +==24924== +==24924== +==24924== Open file descriptor 110: +==24924== +==24924== +==24924== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSuperellipseGenerator_valgrind.txt +==24924== +==24924== +==24924== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24924== +==24924== +==24924== +==24924== HEAP SUMMARY: +==24924== in use at exit: 618,226 bytes in 8,238 blocks +==24924== total heap usage: 47,340 allocs, 39,102 frees, 1,362,406,876 bytes allocated +==24924== +==24924== LEAK SUMMARY: +==24924== definitely lost: 0 bytes in 0 blocks +==24924== indirectly lost: 0 bytes in 0 blocks +==24924== possibly lost: 0 bytes in 0 blocks +==24924== still reachable: 24 bytes in 2 blocks +==24924== suppressed: 618,202 bytes in 8,236 blocks +==24924== Reachable blocks (those to which a pointer was found) are not shown. +==24924== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24924== +==24924== For lists of detected and suppressed errors, rerun with: -s +==24924== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestT2SwapCellKiller_valgrind.txt b/log-files/2024-09-23_05-40-48/TestT2SwapCellKiller_valgrind.txt new file mode 100644 index 000000000..43909715c --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestT2SwapCellKiller_valgrind.txt @@ -0,0 +1,73 @@ +==26228== Memcheck, a memory error detector +==26228== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26228== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26228== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestT2SwapCellKiller -malloc_debug -malloc_dump -memory_info +==26228== Parent PID: 24048 +==26228== +==26228== +==26228== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26228== Open file descriptor 12: +==26228== at 0x10CF207D: pipe (pipe.c:29) +==26228== by 0x196AD07D: ??? +==26228== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26228== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26228== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26228== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26228== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26228== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26228== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26228== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26228== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26228== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26228== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26228== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) +==26228== +==26228== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26228== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26228== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26228== by 0xF137822: ??? +==26228== by 0xF13796F: ??? +==26228== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26228== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26228== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26228== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26228== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26228== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26228== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26228== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26228== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26228== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26228== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26228== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26228== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26228== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26228== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) +==26228== +==26228== Open file descriptor 113: +==26228== +==26228== +==26228== Open file descriptor 110: +==26228== +==26228== +==26228== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestT2SwapCellKiller_valgrind.txt +==26228== +==26228== +==26228== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26228== +==26228== +==26228== +==26228== HEAP SUMMARY: +==26228== in use at exit: 618,354 bytes in 8,239 blocks +==26228== total heap usage: 77,901 allocs, 69,662 frees, 1,343,660,655 bytes allocated +==26228== +==26228== LEAK SUMMARY: +==26228== definitely lost: 0 bytes in 0 blocks +==26228== indirectly lost: 0 bytes in 0 blocks +==26228== possibly lost: 0 bytes in 0 blocks +==26228== still reachable: 56 bytes in 3 blocks +==26228== suppressed: 618,298 bytes in 8,236 blocks +==26228== Reachable blocks (those to which a pointer was found) are not shown. +==26228== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26228== +==26228== For lists of detected and suppressed errors, rerun with: -s +==26228== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestTargetAreaLinearGrowthModifier_valgrind.txt b/log-files/2024-09-23_05-40-48/TestTargetAreaLinearGrowthModifier_valgrind.txt new file mode 100644 index 000000000..6209de83f --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestTargetAreaLinearGrowthModifier_valgrind.txt @@ -0,0 +1,73 @@ +==39710== Memcheck, a memory error detector +==39710== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39710== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39710== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTargetAreaLinearGrowthModifier -malloc_debug -malloc_dump -memory_info +==39710== Parent PID: 24048 +==39710== +==39710== +==39710== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39710== Open file descriptor 12: +==39710== at 0x10CF207D: pipe (pipe.c:29) +==39710== by 0x196AD07D: ??? +==39710== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39710== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39710== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39710== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39710== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39710== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39710== by 0x139DC3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39710== by 0x13253D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39710== by 0x13583C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39710== by 0x1356DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39710== by 0x135D73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39710== by 0x130965: main (TestTargetAreaLinearGrowthModifier.cpp:19) +==39710== +==39710== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39710== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==39710== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39710== by 0xF137822: ??? +==39710== by 0xF13796F: ??? +==39710== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39710== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39710== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39710== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39710== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39710== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39710== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39710== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39710== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39710== by 0x139DC3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39710== by 0x13253D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39710== by 0x13583C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39710== by 0x1356DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39710== by 0x135D73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39710== by 0x130965: main (TestTargetAreaLinearGrowthModifier.cpp:19) +==39710== +==39710== Open file descriptor 113: +==39710== +==39710== +==39710== Open file descriptor 110: +==39710== +==39710== +==39710== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTargetAreaLinearGrowthModifier_valgrind.txt +==39710== +==39710== +==39710== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39710== +==39710== +==39710== +==39710== HEAP SUMMARY: +==39710== in use at exit: 618,354 bytes in 8,239 blocks +==39710== total heap usage: 584,182 allocs, 575,943 frees, 1,436,129,693 bytes allocated +==39710== +==39710== LEAK SUMMARY: +==39710== definitely lost: 0 bytes in 0 blocks +==39710== indirectly lost: 0 bytes in 0 blocks +==39710== possibly lost: 0 bytes in 0 blocks +==39710== still reachable: 56 bytes in 3 blocks +==39710== suppressed: 618,298 bytes in 8,236 blocks +==39710== Reachable blocks (those to which a pointer was found) are not shown. +==39710== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39710== +==39710== For lists of detected and suppressed errors, rerun with: -s +==39710== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestTetrahedralMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestTetrahedralMesh_valgrind.txt new file mode 100644 index 000000000..dbc5387eb --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24531== Memcheck, a memory error detector +==24531== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24531== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24531== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==24531== Parent PID: 24048 +==24531== +==24531== +==24531== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24531== Open file descriptor 12: +==24531== at 0x823407D: pipe (pipe.c:29) +==24531== by 0x100C507D: ??? +==24531== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24531== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24531== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24531== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24531== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24531== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24531== by 0x1518AA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24531== by 0x14BB9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24531== by 0x14F310: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24531== by 0x14F1B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24531== by 0x14F847: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24531== by 0x149FC5: main (TestTetrahedralMesh.cpp:19) +==24531== +==24531== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24531== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24531== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24531== by 0x6590822: ??? +==24531== by 0x659096F: ??? +==24531== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24531== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24531== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24531== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24531== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24531== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24531== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24531== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24531== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24531== by 0x1518AA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24531== by 0x14BB9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24531== by 0x14F310: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24531== by 0x14F1B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24531== by 0x14F847: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24531== by 0x149FC5: main (TestTetrahedralMesh.cpp:19) +==24531== +==24531== Open file descriptor 113: +==24531== +==24531== +==24531== Open file descriptor 110: +==24531== +==24531== +==24531== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTetrahedralMesh_valgrind.txt +==24531== +==24531== +==24531== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24531== +==24531== +==24531== +==24531== HEAP SUMMARY: +==24531== in use at exit: 620,778 bytes in 8,239 blocks +==24531== total heap usage: 1,274,549 allocs, 1,266,310 frees, 1,408,864,874 bytes allocated +==24531== +==24531== LEAK SUMMARY: +==24531== definitely lost: 0 bytes in 0 blocks +==24531== indirectly lost: 0 bytes in 0 blocks +==24531== possibly lost: 0 bytes in 0 blocks +==24531== still reachable: 2,576 bytes in 3 blocks +==24531== suppressed: 618,202 bytes in 8,236 blocks +==24531== Reachable blocks (those to which a pointer was found) are not shown. +==24531== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24531== +==24531== For lists of detected and suppressed errors, rerun with: -s +==24531== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestTimeAdaptivityController_valgrind.txt b/log-files/2024-09-23_05-40-48/TestTimeAdaptivityController_valgrind.txt new file mode 100644 index 000000000..60288b2ba --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestTimeAdaptivityController_valgrind.txt @@ -0,0 +1,73 @@ +==25321== Memcheck, a memory error detector +==25321== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25321== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25321== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestTimeAdaptivityController -malloc_debug -malloc_dump -memory_info +==25321== Parent PID: 24048 +==25321== +==25321== +==25321== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25321== Open file descriptor 12: +==25321== at 0x4CB407D: pipe (pipe.c:29) +==25321== by 0xAEA507D: ??? +==25321== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25321== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25321== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25321== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==25321== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25321== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25321== by 0x111F68: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25321== by 0x10DB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25321== by 0x10FE62: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25321== by 0x10FD5D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25321== by 0x110371: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25321== by 0x10C375: main (TestTimeAdaptivityController.cpp:18) +==25321== +==25321== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25321== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==25321== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25321== by 0x4935822: ??? +==25321== by 0x493596F: ??? +==25321== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25321== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25321== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25321== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25321== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25321== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25321== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==25321== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25321== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25321== by 0x111F68: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25321== by 0x10DB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25321== by 0x10FE62: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25321== by 0x10FD5D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25321== by 0x110371: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25321== by 0x10C375: main (TestTimeAdaptivityController.cpp:18) +==25321== +==25321== Open file descriptor 113: +==25321== +==25321== +==25321== Open file descriptor 110: +==25321== +==25321== +==25321== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimeAdaptivityController_valgrind.txt +==25321== +==25321== +==25321== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25321== +==25321== +==25321== +==25321== HEAP SUMMARY: +==25321== in use at exit: 617,842 bytes in 8,238 blocks +==25321== total heap usage: 44,908 allocs, 36,670 frees, 1,338,159,621 bytes allocated +==25321== +==25321== LEAK SUMMARY: +==25321== definitely lost: 0 bytes in 0 blocks +==25321== indirectly lost: 0 bytes in 0 blocks +==25321== possibly lost: 0 bytes in 0 blocks +==25321== still reachable: 24 bytes in 2 blocks +==25321== suppressed: 617,818 bytes in 8,236 blocks +==25321== Reachable blocks (those to which a pointer was found) are not shown. +==25321== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25321== +==25321== For lists of detected and suppressed errors, rerun with: -s +==25321== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestTimeStepper_valgrind.txt b/log-files/2024-09-23_05-40-48/TestTimeStepper_valgrind.txt new file mode 100644 index 000000000..d7d801193 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestTimeStepper_valgrind.txt @@ -0,0 +1,73 @@ +==24275== Memcheck, a memory error detector +==24275== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24275== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24275== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestTimeStepper -malloc_debug -malloc_dump -memory_info +==24275== Parent PID: 24048 +==24275== +==24275== +==24275== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24275== Open file descriptor 12: +==24275== at 0x629207D: pipe (pipe.c:29) +==24275== by 0xAEA307D: ??? +==24275== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24275== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24275== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24275== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24275== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24275== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24275== by 0x123201: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24275== by 0x11DDE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24275== by 0x120BB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24275== by 0x120A58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24275== by 0x1210EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24275== by 0x11C205: main (TestTimeStepper.cpp:19) +==24275== +==24275== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24275== at 0x6296A1C: __open_nocancel (open64_nocancel.c:39) +==24275== by 0x621ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24275== by 0x4935822: ??? +==24275== by 0x493596F: ??? +==24275== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24275== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24275== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24275== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24275== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24275== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24275== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24275== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24275== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24275== by 0x123201: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24275== by 0x11DDE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24275== by 0x120BB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24275== by 0x120A58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24275== by 0x1210EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24275== by 0x11C205: main (TestTimeStepper.cpp:19) +==24275== +==24275== Open file descriptor 113: +==24275== +==24275== +==24275== Open file descriptor 110: +==24275== +==24275== +==24275== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimeStepper_valgrind.txt +==24275== +==24275== +==24275== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24275== +==24275== +==24275== +==24275== HEAP SUMMARY: +==24275== in use at exit: 617,842 bytes in 8,238 blocks +==24275== total heap usage: 45,120 allocs, 36,882 frees, 1,338,211,342 bytes allocated +==24275== +==24275== LEAK SUMMARY: +==24275== definitely lost: 0 bytes in 0 blocks +==24275== indirectly lost: 0 bytes in 0 blocks +==24275== possibly lost: 0 bytes in 0 blocks +==24275== still reachable: 24 bytes in 2 blocks +==24275== suppressed: 617,818 bytes in 8,236 blocks +==24275== Reachable blocks (those to which a pointer was found) are not shown. +==24275== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24275== +==24275== For lists of detected and suppressed errors, rerun with: -s +==24275== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestTimer_valgrind.txt b/log-files/2024-09-23_05-40-48/TestTimer_valgrind.txt new file mode 100644 index 000000000..e34acbe19 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestTimer_valgrind.txt @@ -0,0 +1,73 @@ +==24274== Memcheck, a memory error detector +==24274== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24274== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24274== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestTimer -malloc_debug -malloc_dump -memory_info +==24274== Parent PID: 24048 +==24274== +==24274== +==24274== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24274== Open file descriptor 12: +==24274== at 0x4D9B07D: pipe (pipe.c:29) +==24274== by 0xAEA507D: ??? +==24274== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24274== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24274== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24274== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24274== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24274== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24274== by 0x112190: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24274== by 0x10DE53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24274== by 0x11025A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24274== by 0x110155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24274== by 0x110769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24274== by 0x10C655: main (TestTimer.cpp:18) +==24274== +==24274== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24274== at 0x4D9FA1C: __open_nocancel (open64_nocancel.c:39) +==24274== by 0x4D23BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24274== by 0x4935822: ??? +==24274== by 0x493596F: ??? +==24274== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24274== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24274== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24274== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24274== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24274== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24274== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24274== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24274== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24274== by 0x112190: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24274== by 0x10DE53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24274== by 0x11025A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24274== by 0x110155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24274== by 0x110769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24274== by 0x10C655: main (TestTimer.cpp:18) +==24274== +==24274== Open file descriptor 113: +==24274== +==24274== +==24274== Open file descriptor 110: +==24274== +==24274== +==24274== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimer_valgrind.txt +==24274== +==24274== +==24274== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24274== +==24274== +==24274== +==24274== HEAP SUMMARY: +==24274== in use at exit: 617,842 bytes in 8,238 blocks +==24274== total heap usage: 44,912 allocs, 36,674 frees, 1,338,159,283 bytes allocated +==24274== +==24274== LEAK SUMMARY: +==24274== definitely lost: 0 bytes in 0 blocks +==24274== indirectly lost: 0 bytes in 0 blocks +==24274== possibly lost: 0 bytes in 0 blocks +==24274== still reachable: 24 bytes in 2 blocks +==24274== suppressed: 617,818 bytes in 8,236 blocks +==24274== Reachable blocks (those to which a pointer was found) are not shown. +==24274== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24274== +==24274== For lists of detected and suppressed errors, rerun with: -s +==24274== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestToroidal2dMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestToroidal2dMesh_valgrind.txt new file mode 100644 index 000000000..820a4b291 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestToroidal2dMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24593== Memcheck, a memory error detector +==24593== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24593== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24593== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidal2dMesh -malloc_debug -malloc_dump -memory_info +==24593== Parent PID: 24048 +==24593== +==24593== +==24593== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24593== Open file descriptor 12: +==24593== at 0x823407D: pipe (pipe.c:29) +==24593== by 0x100C507D: ??? +==24593== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24593== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24593== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24593== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24593== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24593== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24593== by 0x125B47: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24593== by 0x120A23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24593== by 0x123378: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24593== by 0x123274: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24593== by 0x123887: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24593== by 0x11F225: main (TestToroidal2dMesh.cpp:18) +==24593== +==24593== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24593== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24593== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24593== by 0x6590822: ??? +==24593== by 0x659096F: ??? +==24593== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24593== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24593== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24593== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24593== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24593== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24593== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24593== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24593== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24593== by 0x125B47: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24593== by 0x120A23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24593== by 0x123378: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24593== by 0x123274: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24593== by 0x123887: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24593== by 0x11F225: main (TestToroidal2dMesh.cpp:18) +==24593== +==24593== Open file descriptor 113: +==24593== +==24593== +==24593== Open file descriptor 110: +==24593== +==24593== +==24593== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidal2dMesh_valgrind.txt +==24593== +==24593== +==24593== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24593== +==24593== +==24593== +==24593== HEAP SUMMARY: +==24593== in use at exit: 618,226 bytes in 8,238 blocks +==24593== total heap usage: 164,985 allocs, 156,747 frees, 1,352,672,081 bytes allocated +==24593== +==24593== LEAK SUMMARY: +==24593== definitely lost: 0 bytes in 0 blocks +==24593== indirectly lost: 0 bytes in 0 blocks +==24593== possibly lost: 0 bytes in 0 blocks +==24593== still reachable: 24 bytes in 2 blocks +==24593== suppressed: 618,202 bytes in 8,236 blocks +==24593== Reachable blocks (those to which a pointer was found) are not shown. +==24593== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24593== +==24593== For lists of detected and suppressed errors, rerun with: -s +==24593== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestToroidal2dVertexMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestToroidal2dVertexMesh_valgrind.txt new file mode 100644 index 000000000..3e0bc5b74 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestToroidal2dVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24770== Memcheck, a memory error detector +==24770== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24770== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24770== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidal2dVertexMesh -malloc_debug -malloc_dump -memory_info +==24770== Parent PID: 24048 +==24770== +==24770== +==24770== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24770== Open file descriptor 12: +==24770== at 0x823407D: pipe (pipe.c:29) +==24770== by 0x100C507D: ??? +==24770== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24770== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24770== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24770== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24770== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24770== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24770== by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24770== by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24770== by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24770== by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24770== by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24770== by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19) +==24770== +==24770== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24770== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24770== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24770== by 0x6590822: ??? +==24770== by 0x659096F: ??? +==24770== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24770== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24770== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24770== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24770== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24770== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24770== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24770== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24770== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24770== by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24770== by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24770== by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24770== by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24770== by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24770== by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19) +==24770== +==24770== Open file descriptor 113: +==24770== +==24770== +==24770== Open file descriptor 110: +==24770== +==24770== +==24770== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidal2dVertexMesh_valgrind.txt +==24770== +==24770== +==24770== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24770== +==24770== +==24770== +==24770== HEAP SUMMARY: +==24770== in use at exit: 618,226 bytes in 8,238 blocks +==24770== total heap usage: 144,586 allocs, 136,348 frees, 1,346,867,678 bytes allocated +==24770== +==24770== LEAK SUMMARY: +==24770== definitely lost: 0 bytes in 0 blocks +==24770== indirectly lost: 0 bytes in 0 blocks +==24770== possibly lost: 0 bytes in 0 blocks +==24770== still reachable: 24 bytes in 2 blocks +==24770== suppressed: 618,202 bytes in 8,236 blocks +==24770== Reachable blocks (those to which a pointer was found) are not shown. +==24770== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24770== +==24770== For lists of detected and suppressed errors, rerun with: -s +==24770== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestToroidalHoneycombMeshGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestToroidalHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..cf7bb2c6c --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestToroidalHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24628== Memcheck, a memory error detector +==24628== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24628== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24628== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidalHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24628== Parent PID: 24048 +==24628== +==24628== +==24628== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24628== Open file descriptor 12: +==24628== at 0x810907D: pipe (pipe.c:29) +==24628== by 0x100C307D: ??? +==24628== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24628== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24628== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24628== by 0x667ED38: PetscInitialize (pinit.c:924) +==24628== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24628== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24628== by 0x11717D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24628== by 0x1125CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24628== by 0x114F48: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24628== by 0x114DE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24628== by 0x11547F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24628== by 0x1109F5: main (TestToroidalHoneycombMeshGenerator.cpp:19) +==24628== +==24628== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24628== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24628== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24628== by 0x790E822: ??? +==24628== by 0x790E96F: ??? +==24628== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24628== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24628== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24628== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24628== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24628== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24628== by 0x667ED38: PetscInitialize (pinit.c:924) +==24628== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24628== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24628== by 0x11717D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24628== by 0x1125CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24628== by 0x114F48: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24628== by 0x114DE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24628== by 0x11547F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24628== by 0x1109F5: main (TestToroidalHoneycombMeshGenerator.cpp:19) +==24628== +==24628== Open file descriptor 113: +==24628== +==24628== +==24628== Open file descriptor 110: +==24628== +==24628== +==24628== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidalHoneycombMeshGenerator_valgrind.txt +==24628== +==24628== +==24628== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24628== +==24628== +==24628== +==24628== HEAP SUMMARY: +==24628== in use at exit: 618,226 bytes in 8,238 blocks +==24628== total heap usage: 105,621 allocs, 97,383 frees, 1,342,905,635 bytes allocated +==24628== +==24628== LEAK SUMMARY: +==24628== definitely lost: 0 bytes in 0 blocks +==24628== indirectly lost: 0 bytes in 0 blocks +==24628== possibly lost: 0 bytes in 0 blocks +==24628== still reachable: 24 bytes in 2 blocks +==24628== suppressed: 618,202 bytes in 8,236 blocks +==24628== Reachable blocks (those to which a pointer was found) are not shown. +==24628== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24628== +==24628== For lists of detected and suppressed errors, rerun with: -s +==24628== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..95c559203 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24776== Memcheck, a memory error detector +==24776== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24776== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24776== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidalHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24776== Parent PID: 24048 +==24776== +==24776== +==24776== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24776== Open file descriptor 12: +==24776== at 0x810907D: pipe (pipe.c:29) +==24776== by 0x100C307D: ??? +==24776== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24776== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24776== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24776== by 0x667ED38: PetscInitialize (pinit.c:924) +==24776== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24776== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24776== by 0x11A0CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24776== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24776== by 0x116246: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24776== by 0x1160E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24776== by 0x11677D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24776== by 0x111D75: main (TestToroidalHoneycombVertexMeshGenerator.cpp:19) +==24776== +==24776== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24776== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24776== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24776== by 0x790E822: ??? +==24776== by 0x790E96F: ??? +==24776== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24776== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24776== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24776== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24776== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24776== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24776== by 0x667ED38: PetscInitialize (pinit.c:924) +==24776== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24776== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24776== by 0x11A0CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24776== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24776== by 0x116246: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24776== by 0x1160E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24776== by 0x11677D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24776== by 0x111D75: main (TestToroidalHoneycombVertexMeshGenerator.cpp:19) +==24776== +==24776== Open file descriptor 113: +==24776== +==24776== +==24776== Open file descriptor 110: +==24776== +==24776== +==24776== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt +==24776== +==24776== +==24776== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24776== +==24776== +==24776== +==24776== HEAP SUMMARY: +==24776== in use at exit: 618,226 bytes in 8,238 blocks +==24776== total heap usage: 48,582 allocs, 40,344 frees, 1,338,603,487 bytes allocated +==24776== +==24776== LEAK SUMMARY: +==24776== definitely lost: 0 bytes in 0 blocks +==24776== indirectly lost: 0 bytes in 0 blocks +==24776== possibly lost: 0 bytes in 0 blocks +==24776== still reachable: 24 bytes in 2 blocks +==24776== suppressed: 618,202 bytes in 8,236 blocks +==24776== Reachable blocks (those to which a pointer was found) are not shown. +==24776== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24776== +==24776== For lists of detected and suppressed errors, rerun with: -s +==24776== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestTransformations_valgrind.txt b/log-files/2024-09-23_05-40-48/TestTransformations_valgrind.txt new file mode 100644 index 000000000..d94315d47 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestTransformations_valgrind.txt @@ -0,0 +1,73 @@ +==24547== Memcheck, a memory error detector +==24547== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24547== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24547== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTransformations -malloc_debug -malloc_dump -memory_info +==24547== Parent PID: 24048 +==24547== +==24547== +==24547== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24547== Open file descriptor 12: +==24547== at 0x6D3B07D: pipe (pipe.c:29) +==24547== by 0x100C507D: ??? +==24547== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24547== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24547== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24547== by 0x7017D38: PetscInitialize (pinit.c:924) +==24547== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24547== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24547== by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24547== by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24547== by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24547== by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24547== by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24547== by 0x11FEB5: main (TestTransformations.cpp:19) +==24547== +==24547== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24547== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24547== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24547== by 0x6590822: ??? +==24547== by 0x659096F: ??? +==24547== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24547== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24547== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24547== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24547== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24547== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24547== by 0x7017D38: PetscInitialize (pinit.c:924) +==24547== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24547== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24547== by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24547== by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24547== by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24547== by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24547== by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24547== by 0x11FEB5: main (TestTransformations.cpp:19) +==24547== +==24547== Open file descriptor 113: +==24547== +==24547== +==24547== Open file descriptor 110: +==24547== +==24547== +==24547== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTransformations_valgrind.txt +==24547== +==24547== +==24547== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24547== +==24547== +==24547== +==24547== HEAP SUMMARY: +==24547== in use at exit: 618,226 bytes in 8,238 blocks +==24547== total heap usage: 113,753 allocs, 105,515 frees, 1,343,577,670 bytes allocated +==24547== +==24547== LEAK SUMMARY: +==24547== definitely lost: 0 bytes in 0 blocks +==24547== indirectly lost: 0 bytes in 0 blocks +==24547== possibly lost: 0 bytes in 0 blocks +==24547== still reachable: 24 bytes in 2 blocks +==24547== suppressed: 618,202 bytes in 8,236 blocks +==24547== Reachable blocks (those to which a pointer was found) are not shown. +==24547== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24547== +==24547== For lists of detected and suppressed errors, rerun with: -s +==24547== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestTrianglesMeshReader_valgrind.txt b/log-files/2024-09-23_05-40-48/TestTrianglesMeshReader_valgrind.txt new file mode 100644 index 000000000..ddf4b4e98 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestTrianglesMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24663== Memcheck, a memory error detector +==24663== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24663== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24663== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTrianglesMeshReader -malloc_debug -malloc_dump -memory_info +==24663== Parent PID: 24048 +==24663== +==24663== +==24663== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24663== Open file descriptor 12: +==24663== at 0x810907D: pipe (pipe.c:29) +==24663== by 0x100C307D: ??? +==24663== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24663== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24663== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24663== by 0x667ED38: PetscInitialize (pinit.c:924) +==24663== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24663== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24663== by 0x124FBD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24663== by 0x11FF0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24663== by 0x122F54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24663== by 0x122DF4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24663== by 0x12348B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24663== by 0x11E335: main (TestTrianglesMeshReader.cpp:19) +==24663== +==24663== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24663== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24663== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24663== by 0x790E822: ??? +==24663== by 0x790E96F: ??? +==24663== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24663== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24663== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24663== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24663== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24663== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24663== by 0x667ED38: PetscInitialize (pinit.c:924) +==24663== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24663== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24663== by 0x124FBD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24663== by 0x11FF0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24663== by 0x122F54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24663== by 0x122DF4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24663== by 0x12348B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24663== by 0x11E335: main (TestTrianglesMeshReader.cpp:19) +==24663== +==24663== Open file descriptor 113: +==24663== +==24663== +==24663== Open file descriptor 110: +==24663== +==24663== +==24663== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTrianglesMeshReader_valgrind.txt +==24663== +==24663== +==24663== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24663== +==24663== +==24663== +==24663== HEAP SUMMARY: +==24663== in use at exit: 618,226 bytes in 8,238 blocks +==24663== total heap usage: 149,662 allocs, 141,424 frees, 1,349,786,135 bytes allocated +==24663== +==24663== LEAK SUMMARY: +==24663== definitely lost: 0 bytes in 0 blocks +==24663== indirectly lost: 0 bytes in 0 blocks +==24663== possibly lost: 0 bytes in 0 blocks +==24663== still reachable: 24 bytes in 2 blocks +==24663== suppressed: 618,202 bytes in 8,236 blocks +==24663== Reachable blocks (those to which a pointer was found) are not shown. +==24663== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24663== +==24663== For lists of detected and suppressed errors, rerun with: -s +==24663== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestTysonNovak2001OdeSystem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestTysonNovak2001OdeSystem_valgrind.txt new file mode 100644 index 000000000..8f27cd229 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestTysonNovak2001OdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25899== Memcheck, a memory error detector +==25899== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25899== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25899== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info +==25899== Parent PID: 24048 +==25899== +==25899== +==25899== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25899== Open file descriptor 12: +==25899== at 0xDB5007D: pipe (pipe.c:29) +==25899== by 0x196AC07D: ??? +==25899== by 0x14C654CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25899== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25899== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25899== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25899== by 0xD7561D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25899== by 0xD756227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25899== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25899== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25899== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25899== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25899== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25899== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) +==25899== +==25899== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25899== at 0xDB54A1C: __open_nocancel (open64_nocancel.c:39) +==25899== by 0xDAD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25899== by 0xD791822: ??? +==25899== by 0xD79196F: ??? +==25899== by 0x14D0A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25899== by 0x14D0A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25899== by 0x14CC0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25899== by 0x14C652DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25899== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25899== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25899== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25899== by 0xD7561D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25899== by 0xD756227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25899== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25899== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25899== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25899== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25899== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25899== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) +==25899== +==25899== Open file descriptor 113: +==25899== +==25899== +==25899== Open file descriptor 110: +==25899== +==25899== +==25899== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt +==25899== +==25899== +==25899== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25899== +==25899== +==25899== +==25899== HEAP SUMMARY: +==25899== in use at exit: 618,322 bytes in 8,238 blocks +==25899== total heap usage: 58,417 allocs, 50,179 frees, 1,339,316,611 bytes allocated +==25899== +==25899== LEAK SUMMARY: +==25899== definitely lost: 0 bytes in 0 blocks +==25899== indirectly lost: 0 bytes in 0 blocks +==25899== possibly lost: 0 bytes in 0 blocks +==25899== still reachable: 24 bytes in 2 blocks +==25899== suppressed: 618,298 bytes in 8,236 blocks +==25899== Reachable blocks (those to which a pointer was found) are not shown. +==25899== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25899== +==25899== For lists of detected and suppressed errors, rerun with: -s +==25899== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestUblasCustomFunctions_valgrind.txt b/log-files/2024-09-23_05-40-48/TestUblasCustomFunctions_valgrind.txt new file mode 100644 index 000000000..2408b75ff --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestUblasCustomFunctions_valgrind.txt @@ -0,0 +1,73 @@ +==24405== Memcheck, a memory error detector +==24405== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24405== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24405== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestUblasCustomFunctions -malloc_debug -malloc_dump -memory_info +==24405== Parent PID: 24048 +==24405== +==24405== +==24405== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24405== Open file descriptor 12: +==24405== at 0x4E2A07D: pipe (pipe.c:29) +==24405== by 0xAF3907D: ??? +==24405== by 0x8A4D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24405== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24405== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24405== by 0x5075D38: PetscInitialize (pinit.c:924) +==24405== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24405== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24405== by 0x11B27E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24405== by 0x1164ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24405== by 0x118F42: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24405== by 0x118DE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24405== by 0x119479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24405== by 0x114915: main (TestUblasCustomFunctions.cpp:19) +==24405== +==24405== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24405== at 0x4E2EA1C: __open_nocancel (open64_nocancel.c:39) +==24405== by 0x4DB2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24405== by 0x49C4822: ??? +==24405== by 0x49C496F: ??? +==24405== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24405== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24405== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24405== by 0x8A4D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24405== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24405== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24405== by 0x5075D38: PetscInitialize (pinit.c:924) +==24405== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24405== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24405== by 0x11B27E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24405== by 0x1164ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24405== by 0x118F42: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24405== by 0x118DE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24405== by 0x119479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24405== by 0x114915: main (TestUblasCustomFunctions.cpp:19) +==24405== +==24405== Open file descriptor 113: +==24405== +==24405== +==24405== Open file descriptor 110: +==24405== +==24405== +==24405== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestUblasCustomFunctions_valgrind.txt +==24405== +==24405== +==24405== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24405== +==24405== +==24405== +==24405== HEAP SUMMARY: +==24405== in use at exit: 617,858 bytes in 8,238 blocks +==24405== total heap usage: 44,929 allocs, 36,691 frees, 1,338,162,266 bytes allocated +==24405== +==24405== LEAK SUMMARY: +==24405== definitely lost: 0 bytes in 0 blocks +==24405== indirectly lost: 0 bytes in 0 blocks +==24405== possibly lost: 0 bytes in 0 blocks +==24405== still reachable: 24 bytes in 2 blocks +==24405== suppressed: 617,834 bytes in 8,236 blocks +==24405== Reachable blocks (those to which a pointer was found) are not shown. +==24405== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24405== +==24405== For lists of detected and suppressed errors, rerun with: -s +==24405== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestUniformGridRandomFieldGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestUniformGridRandomFieldGenerator_valgrind.txt new file mode 100644 index 000000000..df6ef13a1 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestUniformGridRandomFieldGenerator_valgrind.txt @@ -0,0 +1,36 @@ +==24915== Memcheck, a memory error detector +==24915== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24915== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24915== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestUniformGridRandomFieldGenerator -malloc_debug -malloc_dump -memory_info +==24915== Parent PID: 24048 +==24915== +==24915== +==24915== FILE DESCRIPTORS: 7 open (3 std) at exit. +==24915== Open file descriptor 113: +==24915== +==24915== +==24915== Open file descriptor 110: +==24915== +==24915== +==24915== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestUniformGridRandomFieldGenerator_valgrind.txt +==24915== +==24915== +==24915== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24915== +==24915== +==24915== +==24915== HEAP SUMMARY: +==24915== in use at exit: 2,576 bytes in 3 blocks +==24915== total heap usage: 5,572 allocs, 5,569 frees, 617,074 bytes allocated +==24915== +==24915== LEAK SUMMARY: +==24915== definitely lost: 0 bytes in 0 blocks +==24915== indirectly lost: 0 bytes in 0 blocks +==24915== possibly lost: 0 bytes in 0 blocks +==24915== still reachable: 2,576 bytes in 3 blocks +==24915== suppressed: 0 bytes in 0 blocks +==24915== Reachable blocks (those to which a pointer was found) are not shown. +==24915== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24915== +==24915== For lists of detected and suppressed errors, rerun with: -s +==24915== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-23_05-40-48/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt new file mode 100644 index 000000000..454ba76bd --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==40468== Memcheck, a memory error detector +==40468== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40468== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40468== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVanLeeuwen2009WntSwatCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==40468== Parent PID: 24048 +==40468== +==40468== +==40468== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40468== Open file descriptor 12: +==40468== at 0x127F407D: pipe (pipe.c:29) +==40468== by 0x1B36D07D: ??? +==40468== by 0x165254CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40468== by 0x120FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40468== by 0x12095D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40468== by 0x10D8CD38: PetscInitialize (pinit.c:924) +==40468== by 0x10BFE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40468== by 0x10BFE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40468== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40468== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40468== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40468== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40468== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40468== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) +==40468== +==40468== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40468== at 0x127F8A1C: __open_nocancel (open64_nocancel.c:39) +==40468== by 0x1277CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40468== by 0x10C39822: ??? +==40468== by 0x10C3996F: ??? +==40468== by 0x165CA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40468== by 0x165CA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40468== by 0x16580922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40468== by 0x165252DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40468== by 0x120FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40468== by 0x12095D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40468== by 0x10D8CD38: PetscInitialize (pinit.c:924) +==40468== by 0x10BFE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40468== by 0x10BFE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40468== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40468== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40468== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40468== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40468== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40468== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) +==40468== +==40468== Open file descriptor 113: +==40468== +==40468== +==40468== Open file descriptor 110: +==40468== +==40468== +==40468== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt +==40468== +==40468== +==40468== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40468== +==40468== +==40468== +==40468== HEAP SUMMARY: +==40468== in use at exit: 618,338 bytes in 8,238 blocks +==40468== total heap usage: 519,307 allocs, 511,069 frees, 1,547,101,622 bytes allocated +==40468== +==40468== LEAK SUMMARY: +==40468== definitely lost: 0 bytes in 0 blocks +==40468== indirectly lost: 0 bytes in 0 blocks +==40468== possibly lost: 0 bytes in 0 blocks +==40468== still reachable: 24 bytes in 2 blocks +==40468== suppressed: 618,314 bytes in 8,236 blocks +==40468== Reachable blocks (those to which a pointer was found) are not shown. +==40468== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40468== +==40468== For lists of detected and suppressed errors, rerun with: -s +==40468== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestVentilationProblem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestVentilationProblem_valgrind.txt new file mode 100644 index 000000000..66c14a351 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestVentilationProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41216== Memcheck, a memory error detector +==41216== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41216== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41216== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestVentilationProblem -malloc_debug -malloc_dump -memory_info +==41216== Parent PID: 24048 +==41216== +==41216== +==41216== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41216== Open file descriptor 12: +==41216== at 0x6E5907D: pipe (pipe.c:29) +==41216== by 0x107A407D: ??? +==41216== by 0xC01A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41216== by 0x83D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41216== by 0x836DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41216== by 0x7064D38: PetscInitialize (pinit.c:924) +==41216== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41216== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41216== by 0x11769E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41216== by 0x1128D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41216== by 0x115638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41216== by 0x1154D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41216== by 0x115B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41216== by 0x110B55: main (TestVentilationProblem.cpp:19) +==41216== +==41216== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41216== at 0x6E5DA1C: __open_nocancel (open64_nocancel.c:39) +==41216== by 0x6DE1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41216== by 0x66B0822: ??? +==41216== by 0x66B096F: ??? +==41216== by 0xC0BF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41216== by 0xC0BF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41216== by 0xC075922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41216== by 0xC01A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41216== by 0x83D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41216== by 0x836DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41216== by 0x7064D38: PetscInitialize (pinit.c:924) +==41216== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41216== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41216== by 0x11769E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41216== by 0x1128D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41216== by 0x115638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41216== by 0x1154D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41216== by 0x115B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41216== by 0x110B55: main (TestVentilationProblem.cpp:19) +==41216== +==41216== Open file descriptor 113: +==41216== +==41216== +==41216== Open file descriptor 110: +==41216== +==41216== +==41216== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVentilationProblem_valgrind.txt +==41216== +==41216== +==41216== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41216== +==41216== +==41216== +==41216== HEAP SUMMARY: +==41216== in use at exit: 618,249 bytes in 8,234 blocks +==41216== total heap usage: 5,806,639 allocs, 5,798,405 frees, 1,825,960,462 bytes allocated +==41216== +==41216== LEAK SUMMARY: +==41216== definitely lost: 0 bytes in 0 blocks +==41216== indirectly lost: 0 bytes in 0 blocks +==41216== possibly lost: 0 bytes in 0 blocks +==41216== still reachable: 24 bytes in 2 blocks +==41216== suppressed: 618,225 bytes in 8,232 blocks +==41216== Reachable blocks (those to which a pointer was found) are not shown. +==41216== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41216== +==41216== For lists of detected and suppressed errors, rerun with: -s +==41216== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestVertexBasedCellPopulationForCrypt_valgrind.txt b/log-files/2024-09-23_05-40-48/TestVertexBasedCellPopulationForCrypt_valgrind.txt new file mode 100644 index 000000000..d04523b73 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestVertexBasedCellPopulationForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40536== Memcheck, a memory error detector +==40536== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40536== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40536== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info +==40536== Parent PID: 24048 +==40536== +==40536== +==40536== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40536== Open file descriptor 12: +==40536== at 0x1257007D: pipe (pipe.c:29) +==40536== by 0x1B36D07D: ??? +==40536== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40536== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40536== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40536== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40536== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40536== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40536== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40536== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40536== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40536== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40536== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40536== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) +==40536== +==40536== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40536== at 0x12574A1C: __open_nocancel (open64_nocancel.c:39) +==40536== by 0x124F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40536== by 0x11D75822: ??? +==40536== by 0x11D7596F: ??? +==40536== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40536== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40536== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40536== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40536== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40536== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40536== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40536== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40536== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40536== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40536== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40536== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40536== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40536== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40536== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) +==40536== +==40536== Open file descriptor 113: +==40536== +==40536== +==40536== Open file descriptor 110: +==40536== +==40536== +==40536== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt +==40536== +==40536== +==40536== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40536== +==40536== +==40536== +==40536== HEAP SUMMARY: +==40536== in use at exit: 618,450 bytes in 8,240 blocks +==40536== total heap usage: 53,903 allocs, 45,663 frees, 1,338,962,501 bytes allocated +==40536== +==40536== LEAK SUMMARY: +==40536== definitely lost: 0 bytes in 0 blocks +==40536== indirectly lost: 0 bytes in 0 blocks +==40536== possibly lost: 0 bytes in 0 blocks +==40536== still reachable: 136 bytes in 4 blocks +==40536== suppressed: 618,314 bytes in 8,236 blocks +==40536== Reachable blocks (those to which a pointer was found) are not shown. +==40536== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40536== +==40536== For lists of detected and suppressed errors, rerun with: -s +==40536== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestVertexBasedCellPopulation_valgrind.txt b/log-files/2024-09-23_05-40-48/TestVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..fb123f047 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26235== Memcheck, a memory error detector +==26235== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26235== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26235== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26235== Parent PID: 24048 +==26235== +==26235== +==26235== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26235== Open file descriptor 12: +==26235== at 0x10CF207D: pipe (pipe.c:29) +==26235== by 0x196AD07D: ??? +==26235== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26235== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26235== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26235== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26235== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26235== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26235== by 0x3F7529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26235== by 0x3EC0B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26235== by 0x3F20D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26235== by 0x3F1F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26235== by 0x3F260B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26235== by 0x3EA4D5: main (TestVertexBasedCellPopulation.cpp:19) +==26235== +==26235== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26235== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26235== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26235== by 0xF137822: ??? +==26235== by 0xF13796F: ??? +==26235== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26235== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26235== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26235== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26235== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26235== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26235== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26235== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26235== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26235== by 0x3F7529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26235== by 0x3EC0B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26235== by 0x3F20D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26235== by 0x3F1F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26235== by 0x3F260B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26235== by 0x3EA4D5: main (TestVertexBasedCellPopulation.cpp:19) +==26235== +==26235== Open file descriptor 113: +==26235== +==26235== +==26235== Open file descriptor 110: +==26235== +==26235== +==26235== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulation_valgrind.txt +==26235== +==26235== +==26235== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26235== +==26235== +==26235== +==26235== HEAP SUMMARY: +==26235== in use at exit: 618,354 bytes in 8,239 blocks +==26235== total heap usage: 171,089 allocs, 162,850 frees, 1,350,453,013 bytes allocated +==26235== +==26235== LEAK SUMMARY: +==26235== definitely lost: 0 bytes in 0 blocks +==26235== indirectly lost: 0 bytes in 0 blocks +==26235== possibly lost: 0 bytes in 0 blocks +==26235== still reachable: 56 bytes in 3 blocks +==26235== suppressed: 618,298 bytes in 8,236 blocks +==26235== Reachable blocks (those to which a pointer was found) are not shown. +==26235== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26235== +==26235== For lists of detected and suppressed errors, rerun with: -s +==26235== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestVertexBasedDivisionRules_valgrind.txt b/log-files/2024-09-23_05-40-48/TestVertexBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..5a9f35847 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestVertexBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==26236== Memcheck, a memory error detector +==26236== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26236== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26236== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVertexBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==26236== Parent PID: 24048 +==26236== +==26236== +==26236== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26236== Open file descriptor 12: +==26236== at 0x10DD907D: pipe (pipe.c:29) +==26236== by 0x196AD07D: ??? +==26236== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26236== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26236== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26236== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26236== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26236== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26236== by 0x147723: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26236== by 0x14201D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26236== by 0x144D0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26236== by 0x144BAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26236== by 0x145241: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26236== by 0x140445: main (TestVertexBasedDivisionRules.cpp:19) +==26236== +==26236== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26236== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==26236== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26236== by 0xF137822: ??? +==26236== by 0xF13796F: ??? +==26236== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26236== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26236== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26236== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26236== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26236== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26236== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26236== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26236== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26236== by 0x147723: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26236== by 0x14201D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26236== by 0x144D0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26236== by 0x144BAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26236== by 0x145241: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26236== by 0x140445: main (TestVertexBasedDivisionRules.cpp:19) +==26236== +==26236== Open file descriptor 113: +==26236== +==26236== +==26236== Open file descriptor 110: +==26236== +==26236== +==26236== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedDivisionRules_valgrind.txt +==26236== +==26236== +==26236== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26236== +==26236== +==26236== +==26236== HEAP SUMMARY: +==26236== in use at exit: 618,354 bytes in 8,239 blocks +==26236== total heap usage: 54,154 allocs, 45,915 frees, 1,339,150,929 bytes allocated +==26236== +==26236== LEAK SUMMARY: +==26236== definitely lost: 0 bytes in 0 blocks +==26236== indirectly lost: 0 bytes in 0 blocks +==26236== possibly lost: 0 bytes in 0 blocks +==26236== still reachable: 56 bytes in 3 blocks +==26236== suppressed: 618,298 bytes in 8,236 blocks +==26236== Reachable blocks (those to which a pointer was found) are not shown. +==26236== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26236== +==26236== For lists of detected and suppressed errors, rerun with: -s +==26236== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestVertexCryptBoundaryForce_valgrind.txt b/log-files/2024-09-23_05-40-48/TestVertexCryptBoundaryForce_valgrind.txt new file mode 100644 index 000000000..f4565967b --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestVertexCryptBoundaryForce_valgrind.txt @@ -0,0 +1,73 @@ +==40432== Memcheck, a memory error detector +==40432== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40432== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40432== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info +==40432== Parent PID: 24048 +==40432== +==40432== +==40432== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40432== Open file descriptor 12: +==40432== at 0x110B907D: pipe (pipe.c:29) +==40432== by 0x1B36F07D: ??? +==40432== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40432== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40432== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40432== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40432== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40432== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40432== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40432== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40432== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40432== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40432== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40432== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) +==40432== +==40432== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40432== at 0x110BDA1C: __open_nocancel (open64_nocancel.c:39) +==40432== by 0x11041BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40432== by 0x109F7822: ??? +==40432== by 0x109F796F: ??? +==40432== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40432== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40432== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40432== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40432== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40432== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40432== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40432== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40432== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40432== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40432== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40432== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40432== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40432== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40432== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) +==40432== +==40432== Open file descriptor 113: +==40432== +==40432== +==40432== Open file descriptor 110: +==40432== +==40432== +==40432== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexCryptBoundaryForce_valgrind.txt +==40432== +==40432== +==40432== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40432== +==40432== +==40432== +==40432== HEAP SUMMARY: +==40432== in use at exit: 618,370 bytes in 8,239 blocks +==40432== total heap usage: 56,508 allocs, 48,269 frees, 1,339,181,108 bytes allocated +==40432== +==40432== LEAK SUMMARY: +==40432== definitely lost: 0 bytes in 0 blocks +==40432== indirectly lost: 0 bytes in 0 blocks +==40432== possibly lost: 0 bytes in 0 blocks +==40432== still reachable: 56 bytes in 3 blocks +==40432== suppressed: 618,314 bytes in 8,236 blocks +==40432== Reachable blocks (those to which a pointer was found) are not shown. +==40432== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40432== +==40432== For lists of detected and suppressed errors, rerun with: -s +==40432== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestVertexElement_valgrind.txt b/log-files/2024-09-23_05-40-48/TestVertexElement_valgrind.txt new file mode 100644 index 000000000..ca671668d --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestVertexElement_valgrind.txt @@ -0,0 +1,73 @@ +==24792== Memcheck, a memory error detector +==24792== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24792== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24792== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexElement -malloc_debug -malloc_dump -memory_info +==24792== Parent PID: 24048 +==24792== +==24792== +==24792== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24792== Open file descriptor 12: +==24792== at 0x69F607D: pipe (pipe.c:29) +==24792== by 0x100C307D: ??? +==24792== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24792== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24792== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24792== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==24792== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24792== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24792== by 0x11E098: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24792== by 0x119413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24792== by 0x11C02C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24792== by 0x11BF27: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24792== by 0x11C53B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24792== by 0x117C15: main (TestVertexElement.cpp:18) +==24792== +==24792== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24792== at 0x69FAA1C: __open_nocancel (open64_nocancel.c:39) +==24792== by 0x697EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24792== by 0x6590822: ??? +==24792== by 0x659096F: ??? +==24792== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24792== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24792== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24792== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24792== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24792== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24792== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==24792== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24792== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24792== by 0x11E098: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24792== by 0x119413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24792== by 0x11C02C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24792== by 0x11BF27: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24792== by 0x11C53B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24792== by 0x117C15: main (TestVertexElement.cpp:18) +==24792== +==24792== Open file descriptor 113: +==24792== +==24792== +==24792== Open file descriptor 110: +==24792== +==24792== +==24792== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexElement_valgrind.txt +==24792== +==24792== +==24792== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24792== +==24792== +==24792== +==24792== HEAP SUMMARY: +==24792== in use at exit: 618,226 bytes in 8,238 blocks +==24792== total heap usage: 47,568 allocs, 39,330 frees, 1,338,396,855 bytes allocated +==24792== +==24792== LEAK SUMMARY: +==24792== definitely lost: 0 bytes in 0 blocks +==24792== indirectly lost: 0 bytes in 0 blocks +==24792== possibly lost: 0 bytes in 0 blocks +==24792== still reachable: 24 bytes in 2 blocks +==24792== suppressed: 618,202 bytes in 8,236 blocks +==24792== Reachable blocks (those to which a pointer was found) are not shown. +==24792== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24792== +==24792== For lists of detected and suppressed errors, rerun with: -s +==24792== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestVertexMeshReader_valgrind.txt b/log-files/2024-09-23_05-40-48/TestVertexMeshReader_valgrind.txt new file mode 100644 index 000000000..40482d118 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestVertexMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24807== Memcheck, a memory error detector +==24807== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24807== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24807== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMeshReader -malloc_debug -malloc_dump -memory_info +==24807== Parent PID: 24048 +==24807== +==24807== +==24807== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24807== Open file descriptor 12: +==24807== at 0x690F07D: pipe (pipe.c:29) +==24807== by 0x100C307D: ??? +==24807== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24807== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24807== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24807== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24807== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24807== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24807== by 0x1205C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24807== by 0x11B52D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24807== by 0x11E602: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24807== by 0x11E4A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24807== by 0x11EB39: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24807== by 0x119955: main (TestVertexMeshReader.cpp:19) +==24807== +==24807== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24807== at 0x6913A1C: __open_nocancel (open64_nocancel.c:39) +==24807== by 0x6897BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24807== by 0x6590822: ??? +==24807== by 0x659096F: ??? +==24807== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24807== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24807== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24807== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24807== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24807== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24807== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24807== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24807== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24807== by 0x1205C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24807== by 0x11B52D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24807== by 0x11E602: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24807== by 0x11E4A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24807== by 0x11EB39: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24807== by 0x119955: main (TestVertexMeshReader.cpp:19) +==24807== +==24807== Open file descriptor 113: +==24807== +==24807== +==24807== Open file descriptor 110: +==24807== +==24807== +==24807== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMeshReader_valgrind.txt +==24807== +==24807== +==24807== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24807== +==24807== +==24807== +==24807== HEAP SUMMARY: +==24807== in use at exit: 618,226 bytes in 8,238 blocks +==24807== total heap usage: 47,845 allocs, 39,607 frees, 1,338,788,175 bytes allocated +==24807== +==24807== LEAK SUMMARY: +==24807== definitely lost: 0 bytes in 0 blocks +==24807== indirectly lost: 0 bytes in 0 blocks +==24807== possibly lost: 0 bytes in 0 blocks +==24807== still reachable: 24 bytes in 2 blocks +==24807== suppressed: 618,202 bytes in 8,236 blocks +==24807== Reachable blocks (those to which a pointer was found) are not shown. +==24807== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24807== +==24807== For lists of detected and suppressed errors, rerun with: -s +==24807== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestVertexMeshWriter_valgrind.txt b/log-files/2024-09-23_05-40-48/TestVertexMeshWriter_valgrind.txt new file mode 100644 index 000000000..6a628a09b --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestVertexMeshWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24808== Memcheck, a memory error detector +==24808== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24808== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24808== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMeshWriter -malloc_debug -malloc_dump -memory_info +==24808== Parent PID: 24048 +==24808== +==24808== +==24808== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24808== Open file descriptor 12: +==24808== at 0x81F007D: pipe (pipe.c:29) +==24808== by 0x100C307D: ??? +==24808== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24808== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24808== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24808== by 0x667ED38: PetscInitialize (pinit.c:924) +==24808== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24808== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24808== by 0x12CC41: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24808== by 0x1260AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24808== by 0x128CC8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24808== by 0x128B68: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24808== by 0x1291FF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24808== by 0x1244D5: main (TestVertexMeshWriter.cpp:19) +==24808== +==24808== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24808== at 0x81F4A1C: __open_nocancel (open64_nocancel.c:39) +==24808== by 0x8178BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24808== by 0x790E822: ??? +==24808== by 0x790E96F: ??? +==24808== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24808== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24808== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24808== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24808== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24808== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24808== by 0x667ED38: PetscInitialize (pinit.c:924) +==24808== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24808== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24808== by 0x12CC41: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24808== by 0x1260AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24808== by 0x128CC8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24808== by 0x128B68: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24808== by 0x1291FF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24808== by 0x1244D5: main (TestVertexMeshWriter.cpp:19) +==24808== +==24808== Open file descriptor 113: +==24808== +==24808== +==24808== Open file descriptor 110: +==24808== +==24808== +==24808== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMeshWriter_valgrind.txt +==24808== +==24808== +==24808== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24808== +==24808== +==24808== +==24808== HEAP SUMMARY: +==24808== in use at exit: 618,226 bytes in 8,238 blocks +==24808== total heap usage: 63,652 allocs, 55,414 frees, 1,341,880,983 bytes allocated +==24808== +==24808== LEAK SUMMARY: +==24808== definitely lost: 0 bytes in 0 blocks +==24808== indirectly lost: 0 bytes in 0 blocks +==24808== possibly lost: 0 bytes in 0 blocks +==24808== still reachable: 24 bytes in 2 blocks +==24808== suppressed: 618,202 bytes in 8,236 blocks +==24808== Reachable blocks (those to which a pointer was found) are not shown. +==24808== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24808== +==24808== For lists of detected and suppressed errors, rerun with: -s +==24808== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestVertexMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestVertexMesh_valgrind.txt new file mode 100644 index 000000000..2e21a084b --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24793== Memcheck, a memory error detector +==24793== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24793== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24793== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMesh -malloc_debug -malloc_dump -memory_info +==24793== Parent PID: 24048 +==24793== +==24793== +==24793== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24793== Open file descriptor 12: +==24793== at 0x823407D: pipe (pipe.c:29) +==24793== by 0x100C507D: ??? +==24793== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24793== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24793== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24793== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24793== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24793== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24793== by 0x14375F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24793== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24793== by 0x1413AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24793== by 0x14124C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24793== by 0x1418E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24793== by 0x13BF25: main (TestVertexMesh.cpp:19) +==24793== +==24793== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24793== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24793== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24793== by 0x6590822: ??? +==24793== by 0x659096F: ??? +==24793== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24793== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24793== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24793== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24793== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24793== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24793== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24793== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24793== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24793== by 0x14375F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24793== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24793== by 0x1413AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24793== by 0x14124C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24793== by 0x1418E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24793== by 0x13BF25: main (TestVertexMesh.cpp:19) +==24793== +==24793== Open file descriptor 113: +==24793== +==24793== +==24793== Open file descriptor 110: +==24793== +==24793== +==24793== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMesh_valgrind.txt +==24793== +==24793== +==24793== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24793== +==24793== +==24793== +==24793== HEAP SUMMARY: +==24793== in use at exit: 620,778 bytes in 8,239 blocks +==24793== total heap usage: 96,570 allocs, 88,331 frees, 1,348,089,792 bytes allocated +==24793== +==24793== LEAK SUMMARY: +==24793== definitely lost: 0 bytes in 0 blocks +==24793== indirectly lost: 0 bytes in 0 blocks +==24793== possibly lost: 0 bytes in 0 blocks +==24793== still reachable: 2,576 bytes in 3 blocks +==24793== suppressed: 618,202 bytes in 8,236 blocks +==24793== Reachable blocks (those to which a pointer was found) are not shown. +==24793== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24793== +==24793== For lists of detected and suppressed errors, rerun with: -s +==24793== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-23_05-40-48/TestVisualizingWithParaviewTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestVisualizingWithParaviewTutorial_valgrind.txt new file mode 100644 index 000000000..02aa2acd8 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestVisualizingWithParaviewTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40330== Memcheck, a memory error detector +==40330== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40330== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40330== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVisualizingWithParaviewTutorial -malloc_debug -malloc_dump -memory_info +==40330== Parent PID: 24048 +==40330== +==40330== +==40330== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40330== Open file descriptor 12: +==40330== at 0x10CB007D: pipe (pipe.c:29) +==40330== by 0x196AD07D: ??? +==40330== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40330== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40330== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40330== by 0xF225D38: PetscInitialize (pinit.c:924) +==40330== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40330== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40330== by 0x124111: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40330== by 0x11F773: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40330== by 0x121C86: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40330== by 0x121B81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40330== by 0x122195: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40330== by 0x11DF75: main (TestVisualizingWithParaviewTutorial.cpp:18) +==40330== +==40330== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40330== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==40330== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40330== by 0x104B5822: ??? +==40330== by 0x104B596F: ??? +==40330== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40330== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40330== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40330== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40330== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40330== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40330== by 0xF225D38: PetscInitialize (pinit.c:924) +==40330== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40330== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40330== by 0x124111: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40330== by 0x11F773: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40330== by 0x121C86: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40330== by 0x121B81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40330== by 0x122195: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40330== by 0x11DF75: main (TestVisualizingWithParaviewTutorial.cpp:18) +==40330== +==40330== Open file descriptor 113: +==40330== +==40330== +==40330== Open file descriptor 110: +==40330== +==40330== +==40330== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVisualizingWithParaviewTutorial_valgrind.txt +==40330== +==40330== +==40330== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40330== +==40330== +==40330== +==40330== HEAP SUMMARY: +==40330== in use at exit: 618,281 bytes in 8,235 blocks +==40330== total heap usage: 11,602,424 allocs, 11,594,189 frees, 2,651,993,963 bytes allocated +==40330== +==40330== LEAK SUMMARY: +==40330== definitely lost: 0 bytes in 0 blocks +==40330== indirectly lost: 0 bytes in 0 blocks +==40330== possibly lost: 0 bytes in 0 blocks +==40330== still reachable: 56 bytes in 3 blocks +==40330== suppressed: 618,225 bytes in 8,232 blocks +==40330== Reachable blocks (those to which a pointer was found) are not shown. +==40330== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40330== +==40330== For lists of detected and suppressed errors, rerun with: -s +==40330== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt b/log-files/2024-09-23_05-40-48/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt new file mode 100644 index 000000000..1b528b495 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt @@ -0,0 +1,73 @@ +==43606== Memcheck, a memory error detector +==43606== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43606== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43606== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestVoltageInterpolaterOntoMechanicsMesh -malloc_debug -malloc_dump -memory_info +==43606== Parent PID: 24048 +==43606== +==43606== +==43606== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43606== Open file descriptor 12: +==43606== at 0xB8FF07D: pipe (pipe.c:29) +==43606== by 0x1432407D: ??? +==43606== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43606== by 0xBC7A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43606== by 0xBC13D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43606== by 0x9F91D38: PetscInitialize (pinit.c:924) +==43606== by 0x9E681D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43606== by 0x9E68227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43606== by 0x11D9D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43606== by 0x119393: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43606== by 0x11B94C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43606== by 0x11B847: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43606== by 0x11BE5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43606== by 0x117B95: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) +==43606== +==43606== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43606== at 0xB903A1C: __open_nocancel (open64_nocancel.c:39) +==43606== by 0xB887BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43606== by 0xB221822: ??? +==43606== by 0xB22196F: ??? +==43606== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43606== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43606== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43606== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43606== by 0xBC7A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43606== by 0xBC13D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43606== by 0x9F91D38: PetscInitialize (pinit.c:924) +==43606== by 0x9E681D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43606== by 0x9E68227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43606== by 0x11D9D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43606== by 0x119393: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43606== by 0x11B94C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43606== by 0x11B847: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43606== by 0x11BE5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43606== by 0x117B95: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) +==43606== +==43606== Open file descriptor 113: +==43606== +==43606== +==43606== Open file descriptor 110: +==43606== +==43606== +==43606== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt +==43606== +==43606== +==43606== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43606== +==43606== +==43606== +==43606== HEAP SUMMARY: +==43606== in use at exit: 618,818 bytes in 8,248 blocks +==43606== total heap usage: 544,329 allocs, 536,081 frees, 1,522,645,445 bytes allocated +==43606== +==43606== LEAK SUMMARY: +==43606== definitely lost: 0 bytes in 0 blocks +==43606== indirectly lost: 0 bytes in 0 blocks +==43606== possibly lost: 0 bytes in 0 blocks +==43606== still reachable: 24 bytes in 2 blocks +==43606== suppressed: 618,794 bytes in 8,246 blocks +==43606== Reachable blocks (those to which a pointer was found) are not shown. +==43606== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43606== +==43606== For lists of detected and suppressed errors, rerun with: -s +==43606== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 38) diff --git a/log-files/2024-09-23_05-40-48/TestVolumeTrackingModifier_valgrind.txt b/log-files/2024-09-23_05-40-48/TestVolumeTrackingModifier_valgrind.txt new file mode 100644 index 000000000..0641d2fab --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestVolumeTrackingModifier_valgrind.txt @@ -0,0 +1,73 @@ +==39753== Memcheck, a memory error detector +==39753== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39753== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39753== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVolumeTrackingModifier -malloc_debug -malloc_dump -memory_info +==39753== Parent PID: 24048 +==39753== +==39753== +==39753== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39753== Open file descriptor 12: +==39753== at 0xF83B07D: pipe (pipe.c:29) +==39753== by 0x196AD07D: ??? +==39753== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39753== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39753== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39753== by 0x10127D38: PetscInitialize (pinit.c:924) +==39753== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39753== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39753== by 0x20235E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39753== by 0x1FA77F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39753== by 0x1FDF12: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39753== by 0x1FDE0D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39753== by 0x1FE421: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39753== by 0x1F8F75: main (TestVolumeTrackingModifier.cpp:18) +==39753== +==39753== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39753== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==39753== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39753== by 0xF137822: ??? +==39753== by 0xF13796F: ??? +==39753== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39753== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39753== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39753== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39753== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39753== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39753== by 0x10127D38: PetscInitialize (pinit.c:924) +==39753== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39753== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39753== by 0x20235E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39753== by 0x1FA77F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39753== by 0x1FDF12: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39753== by 0x1FDE0D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39753== by 0x1FE421: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39753== by 0x1F8F75: main (TestVolumeTrackingModifier.cpp:18) +==39753== +==39753== Open file descriptor 113: +==39753== +==39753== +==39753== Open file descriptor 110: +==39753== +==39753== +==39753== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVolumeTrackingModifier_valgrind.txt +==39753== +==39753== +==39753== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39753== +==39753== +==39753== +==39753== HEAP SUMMARY: +==39753== in use at exit: 618,297 bytes in 8,236 blocks +==39753== total heap usage: 11,260,958 allocs, 11,252,722 frees, 3,060,134,629 bytes allocated +==39753== +==39753== LEAK SUMMARY: +==39753== definitely lost: 0 bytes in 0 blocks +==39753== indirectly lost: 0 bytes in 0 blocks +==39753== possibly lost: 0 bytes in 0 blocks +==39753== still reachable: 72 bytes in 4 blocks +==39753== suppressed: 618,225 bytes in 8,232 blocks +==39753== Reachable blocks (those to which a pointer was found) are not shown. +==39753== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39753== +==39753== For lists of detected and suppressed errors, rerun with: -s +==39753== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestVoronoiVertexMeshGenerator_valgrind.txt b/log-files/2024-09-23_05-40-48/TestVoronoiVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..db92a9f87 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestVoronoiVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24822== Memcheck, a memory error detector +==24822== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24822== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24822== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVoronoiVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24822== Parent PID: 24048 +==24822== +==24822== +==24822== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24822== Open file descriptor 12: +==24822== at 0x6D3B07D: pipe (pipe.c:29) +==24822== by 0x100C507D: ??? +==24822== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24822== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24822== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24822== by 0x7017D38: PetscInitialize (pinit.c:924) +==24822== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24822== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24822== by 0x1216D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24822== by 0x11C6AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24822== by 0x11F25A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24822== by 0x11F0FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24822== by 0x11F791: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24822== by 0x11AAD5: main (TestVoronoiVertexMeshGenerator.cpp:19) +==24822== +==24822== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24822== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24822== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24822== by 0x6590822: ??? +==24822== by 0x659096F: ??? +==24822== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24822== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24822== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24822== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24822== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24822== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24822== by 0x7017D38: PetscInitialize (pinit.c:924) +==24822== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24822== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24822== by 0x1216D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24822== by 0x11C6AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24822== by 0x11F25A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24822== by 0x11F0FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24822== by 0x11F791: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24822== by 0x11AAD5: main (TestVoronoiVertexMeshGenerator.cpp:19) +==24822== +==24822== Open file descriptor 113: +==24822== +==24822== +==24822== Open file descriptor 110: +==24822== +==24822== +==24822== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVoronoiVertexMeshGenerator_valgrind.txt +==24822== +==24822== +==24822== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24822== +==24822== +==24822== +==24822== HEAP SUMMARY: +==24822== in use at exit: 620,705 bytes in 8,235 blocks +==24822== total heap usage: 446,960 allocs, 438,725 frees, 1,381,744,918 bytes allocated +==24822== +==24822== LEAK SUMMARY: +==24822== definitely lost: 0 bytes in 0 blocks +==24822== indirectly lost: 0 bytes in 0 blocks +==24822== possibly lost: 0 bytes in 0 blocks +==24822== still reachable: 2,576 bytes in 3 blocks +==24822== suppressed: 618,129 bytes in 8,232 blocks +==24822== Reachable blocks (those to which a pointer was found) are not shown. +==24822== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24822== +==24822== For lists of detected and suppressed errors, rerun with: -s +==24822== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-23_05-40-48/TestVtkMeshReader_valgrind.txt b/log-files/2024-09-23_05-40-48/TestVtkMeshReader_valgrind.txt new file mode 100644 index 000000000..77b829cbd --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestVtkMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24664== Memcheck, a memory error detector +==24664== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24664== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24664== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVtkMeshReader -malloc_debug -malloc_dump -memory_info +==24664== Parent PID: 24048 +==24664== +==24664== +==24664== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24664== Open file descriptor 12: +==24664== at 0x6D3B07D: pipe (pipe.c:29) +==24664== by 0x100C507D: ??? +==24664== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24664== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24664== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24664== by 0x7017D38: PetscInitialize (pinit.c:924) +==24664== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24664== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24664== by 0x12E1F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24664== by 0x12936D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24664== by 0x12C13E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24664== by 0x12BFDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24664== by 0x12C675: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24664== by 0x127795: main (TestVtkMeshReader.cpp:19) +==24664== +==24664== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24664== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24664== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24664== by 0x6590822: ??? +==24664== by 0x659096F: ??? +==24664== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24664== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24664== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24664== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24664== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24664== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24664== by 0x7017D38: PetscInitialize (pinit.c:924) +==24664== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24664== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24664== by 0x12E1F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24664== by 0x12936D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24664== by 0x12C13E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24664== by 0x12BFDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24664== by 0x12C675: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24664== by 0x127795: main (TestVtkMeshReader.cpp:19) +==24664== +==24664== Open file descriptor 113: +==24664== +==24664== +==24664== Open file descriptor 110: +==24664== +==24664== +==24664== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVtkMeshReader_valgrind.txt +==24664== +==24664== +==24664== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24664== +==24664== +==24664== +==24664== HEAP SUMMARY: +==24664== in use at exit: 618,226 bytes in 8,238 blocks +==24664== total heap usage: 161,766 allocs, 153,528 frees, 1,348,897,294 bytes allocated +==24664== +==24664== LEAK SUMMARY: +==24664== definitely lost: 0 bytes in 0 blocks +==24664== indirectly lost: 0 bytes in 0 blocks +==24664== possibly lost: 0 bytes in 0 blocks +==24664== still reachable: 24 bytes in 2 blocks +==24664== suppressed: 618,202 bytes in 8,236 blocks +==24664== Reachable blocks (those to which a pointer was found) are not shown. +==24664== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24664== +==24664== For lists of detected and suppressed errors, rerun with: -s +==24664== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt b/log-files/2024-09-23_05-40-48/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt new file mode 100644 index 000000000..7e89ff0f1 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt @@ -0,0 +1,73 @@ +==25406== Memcheck, a memory error detector +==25406== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25406== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25406== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestVtkNonlinearElasticitySolutionWriter -malloc_debug -malloc_dump -memory_info +==25406== Parent PID: 24048 +==25406== +==25406== +==25406== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25406== Open file descriptor 12: +==25406== at 0x82CA07D: pipe (pipe.c:29) +==25406== by 0x106D707D: ??? +==25406== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25406== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25406== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25406== by 0x688FD38: PetscInitialize (pinit.c:924) +==25406== by 0x67661D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25406== by 0x6766227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25406== by 0x132248: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25406== by 0x12D1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25406== by 0x1302BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25406== by 0x13015C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25406== by 0x1307F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25406== by 0x12B615: main (TestVtkNonlinearElasticitySolutionWriter.cpp:19) +==25406== +==25406== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25406== at 0x82CEA1C: __open_nocancel (open64_nocancel.c:39) +==25406== by 0x8252BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25406== by 0x7B1F822: ??? +==25406== by 0x7B1F96F: ??? +==25406== by 0xC0846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25406== by 0xC084938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25406== by 0xC03A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25406== by 0xBFDF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25406== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25406== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25406== by 0x688FD38: PetscInitialize (pinit.c:924) +==25406== by 0x67661D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25406== by 0x6766227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25406== by 0x132248: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25406== by 0x12D1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25406== by 0x1302BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25406== by 0x13015C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25406== by 0x1307F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25406== by 0x12B615: main (TestVtkNonlinearElasticitySolutionWriter.cpp:19) +==25406== +==25406== Open file descriptor 113: +==25406== +==25406== +==25406== Open file descriptor 110: +==25406== +==25406== +==25406== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt +==25406== +==25406== +==25406== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25406== +==25406== +==25406== +==25406== HEAP SUMMARY: +==25406== in use at exit: 618,274 bytes in 8,238 blocks +==25406== total heap usage: 419,051 allocs, 410,813 frees, 1,414,784,935 bytes allocated +==25406== +==25406== LEAK SUMMARY: +==25406== definitely lost: 0 bytes in 0 blocks +==25406== indirectly lost: 0 bytes in 0 blocks +==25406== possibly lost: 0 bytes in 0 blocks +==25406== still reachable: 24 bytes in 2 blocks +==25406== suppressed: 618,250 bytes in 8,236 blocks +==25406== Reachable blocks (those to which a pointer was found) are not shown. +==25406== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25406== +==25406== For lists of detected and suppressed errors, rerun with: -s +==25406== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestWarnings_valgrind.txt b/log-files/2024-09-23_05-40-48/TestWarnings_valgrind.txt new file mode 100644 index 000000000..a9c45cd3e --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestWarnings_valgrind.txt @@ -0,0 +1,73 @@ +==24294== Memcheck, a memory error detector +==24294== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24294== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24294== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestWarnings -malloc_debug -malloc_dump -memory_info +==24294== Parent PID: 24048 +==24294== +==24294== +==24294== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24294== Open file descriptor 12: +==24294== at 0x616907D: pipe (pipe.c:29) +==24294== by 0xAEA507D: ??? +==24294== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24294== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24294== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24294== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24294== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24294== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24294== by 0x114FFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24294== by 0x1106CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24294== by 0x11308E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24294== by 0x112F2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24294== by 0x1135C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24294== by 0x10EAF5: main (TestWarnings.cpp:19) +==24294== +==24294== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24294== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24294== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24294== by 0x5CB3822: ??? +==24294== by 0x5CB396F: ??? +==24294== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24294== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24294== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24294== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24294== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24294== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24294== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24294== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24294== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24294== by 0x114FFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24294== by 0x1106CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24294== by 0x11308E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24294== by 0x112F2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24294== by 0x1135C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24294== by 0x10EAF5: main (TestWarnings.cpp:19) +==24294== +==24294== Open file descriptor 113: +==24294== +==24294== +==24294== Open file descriptor 110: +==24294== +==24294== +==24294== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWarnings_valgrind.txt +==24294== +==24294== +==24294== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24294== +==24294== +==24294== +==24294== HEAP SUMMARY: +==24294== in use at exit: 617,842 bytes in 8,238 blocks +==24294== total heap usage: 45,668 allocs, 37,430 frees, 1,338,292,987 bytes allocated +==24294== +==24294== LEAK SUMMARY: +==24294== definitely lost: 0 bytes in 0 blocks +==24294== indirectly lost: 0 bytes in 0 blocks +==24294== possibly lost: 0 bytes in 0 blocks +==24294== still reachable: 24 bytes in 2 blocks +==24294== suppressed: 617,818 bytes in 8,236 blocks +==24294== Reachable blocks (those to which a pointer was found) are not shown. +==24294== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24294== +==24294== For lists of detected and suppressed errors, rerun with: -s +==24294== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-23_05-40-48/TestWntCellCycleOdeSystem_valgrind.txt b/log-files/2024-09-23_05-40-48/TestWntCellCycleOdeSystem_valgrind.txt new file mode 100644 index 000000000..b0351c68d --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestWntCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==40477== Memcheck, a memory error detector +==40477== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40477== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40477== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==40477== Parent PID: 24048 +==40477== +==40477== +==40477== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40477== Open file descriptor 12: +==40477== at 0x1085407D: pipe (pipe.c:29) +==40477== by 0x1B36E07D: ??? +==40477== by 0x155114CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40477== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40477== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40477== by 0xF131D38: PetscInitialize (pinit.c:924) +==40477== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40477== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40477== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40477== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40477== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40477== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40477== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40477== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) +==40477== +==40477== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40477== at 0x10858A1C: __open_nocancel (open64_nocancel.c:39) +==40477== by 0x107DCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40477== by 0xEFDE822: ??? +==40477== by 0xEFDE96F: ??? +==40477== by 0x155B66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40477== by 0x155B6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40477== by 0x1556C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40477== by 0x155112DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40477== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40477== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40477== by 0xF131D38: PetscInitialize (pinit.c:924) +==40477== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40477== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40477== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40477== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40477== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40477== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40477== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40477== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) +==40477== +==40477== Open file descriptor 113: +==40477== +==40477== +==40477== Open file descriptor 110: +==40477== +==40477== +==40477== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntCellCycleOdeSystem_valgrind.txt +==40477== +==40477== +==40477== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40477== +==40477== +==40477== +==40477== HEAP SUMMARY: +==40477== in use at exit: 618,338 bytes in 8,238 blocks +==40477== total heap usage: 185,583 allocs, 177,345 frees, 1,419,924,406 bytes allocated +==40477== +==40477== LEAK SUMMARY: +==40477== definitely lost: 0 bytes in 0 blocks +==40477== indirectly lost: 0 bytes in 0 blocks +==40477== possibly lost: 0 bytes in 0 blocks +==40477== still reachable: 24 bytes in 2 blocks +==40477== suppressed: 618,314 bytes in 8,236 blocks +==40477== Reachable blocks (those to which a pointer was found) are not shown. +==40477== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40477== +==40477== For lists of detected and suppressed errors, rerun with: -s +==40477== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestWntConcentration_valgrind.txt b/log-files/2024-09-23_05-40-48/TestWntConcentration_valgrind.txt new file mode 100644 index 000000000..e9271cf05 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestWntConcentration_valgrind.txt @@ -0,0 +1,73 @@ +==40401== Memcheck, a memory error detector +==40401== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40401== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40401== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntConcentration -malloc_debug -malloc_dump -memory_info +==40401== Parent PID: 24048 +==40401== +==40401== +==40401== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40401== Open file descriptor 12: +==40401== at 0x1269907D: pipe (pipe.c:29) +==40401== by 0x1B36D07D: ??? +==40401== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40401== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40401== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40401== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40401== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40401== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40401== by 0x1449B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40401== by 0x13F409: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40401== by 0x14221A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40401== by 0x1420BA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40401== by 0x142751: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40401== by 0x13D825: main (TestWntConcentration.cpp:19) +==40401== +==40401== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40401== at 0x1269DA1C: __open_nocancel (open64_nocancel.c:39) +==40401== by 0x12621BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40401== by 0x109F7822: ??? +==40401== by 0x109F796F: ??? +==40401== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40401== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40401== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40401== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40401== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40401== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40401== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40401== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40401== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40401== by 0x1449B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40401== by 0x13F409: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40401== by 0x14221A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40401== by 0x1420BA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40401== by 0x142751: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40401== by 0x13D825: main (TestWntConcentration.cpp:19) +==40401== +==40401== Open file descriptor 113: +==40401== +==40401== +==40401== Open file descriptor 110: +==40401== +==40401== +==40401== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntConcentration_valgrind.txt +==40401== +==40401== +==40401== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40401== +==40401== +==40401== +==40401== HEAP SUMMARY: +==40401== in use at exit: 618,450 bytes in 8,240 blocks +==40401== total heap usage: 56,678 allocs, 48,438 frees, 1,340,183,441 bytes allocated +==40401== +==40401== LEAK SUMMARY: +==40401== definitely lost: 0 bytes in 0 blocks +==40401== indirectly lost: 0 bytes in 0 blocks +==40401== possibly lost: 0 bytes in 0 blocks +==40401== still reachable: 136 bytes in 4 blocks +==40401== suppressed: 618,314 bytes in 8,236 blocks +==40401== Reachable blocks (those to which a pointer was found) are not shown. +==40401== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40401== +==40401== For lists of detected and suppressed errors, rerun with: -s +==40401== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-23_05-40-48/TestWritingPdeSolversTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestWritingPdeSolversTutorial_valgrind.txt new file mode 100644 index 000000000..a3da2c716 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestWritingPdeSolversTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==25140== Memcheck, a memory error detector +==25140== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25140== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25140== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestWritingPdeSolversTutorial -malloc_debug -malloc_dump -memory_info +==25140== Parent PID: 24048 +==25140== +==25140== +==25140== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25140== Open file descriptor 12: +==25140== at 0x855A07D: pipe (pipe.c:29) +==25140== by 0x104D507D: ??? +==25140== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25140== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25140== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25140== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==25140== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25140== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25140== by 0x14C16C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25140== by 0x147113: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25140== by 0x149DC4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25140== by 0x149CBF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25140== by 0x14A2D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25140== by 0x145915: main (TestWritingPdeSolversTutorial.cpp:18) +==25140== +==25140== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25140== at 0x855EA1C: __open_nocancel (open64_nocancel.c:39) +==25140== by 0x84E2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25140== by 0x7DAF822: ??? +==25140== by 0x7DAF96F: ??? +==25140== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25140== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25140== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25140== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25140== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25140== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25140== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==25140== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25140== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25140== by 0x14C16C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25140== by 0x147113: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25140== by 0x149DC4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25140== by 0x149CBF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25140== by 0x14A2D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25140== by 0x145915: main (TestWritingPdeSolversTutorial.cpp:18) +==25140== +==25140== Open file descriptor 113: +==25140== +==25140== +==25140== Open file descriptor 110: +==25140== +==25140== +==25140== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingPdeSolversTutorial_valgrind.txt +==25140== +==25140== +==25140== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25140== +==25140== +==25140== +==25140== HEAP SUMMARY: +==25140== in use at exit: 618,665 bytes in 8,244 blocks +==25140== total heap usage: 1,131,257 allocs, 1,123,013 frees, 1,457,327,788 bytes allocated +==25140== +==25140== LEAK SUMMARY: +==25140== definitely lost: 0 bytes in 0 blocks +==25140== indirectly lost: 0 bytes in 0 blocks +==25140== possibly lost: 0 bytes in 0 blocks +==25140== still reachable: 24 bytes in 2 blocks +==25140== suppressed: 618,641 bytes in 8,242 blocks +==25140== Reachable blocks (those to which a pointer was found) are not shown. +==25140== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25140== +==25140== For lists of detected and suppressed errors, rerun with: -s +==25140== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 31) diff --git a/log-files/2024-09-23_05-40-48/TestWritingPdeSolversTwoTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestWritingPdeSolversTwoTutorial_valgrind.txt new file mode 100644 index 000000000..704cd4916 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestWritingPdeSolversTwoTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==25155== Memcheck, a memory error detector +==25155== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25155== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25155== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestWritingPdeSolversTwoTutorial -malloc_debug -malloc_dump -memory_info +==25155== Parent PID: 24048 +==25155== +==25155== +==25155== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25155== Open file descriptor 12: +==25155== at 0x855A07D: pipe (pipe.c:29) +==25155== by 0x104D507D: ??? +==25155== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25155== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25155== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25155== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==25155== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25155== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25155== by 0x13DDFA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25155== by 0x138DF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25155== by 0x13B99A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25155== by 0x13B895: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25155== by 0x13BEA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25155== by 0x1375F5: main (TestWritingPdeSolversTwoTutorial.cpp:18) +==25155== +==25155== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25155== at 0x855EA1C: __open_nocancel (open64_nocancel.c:39) +==25155== by 0x84E2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25155== by 0x7DAF822: ??? +==25155== by 0x7DAF96F: ??? +==25155== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25155== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25155== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25155== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25155== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25155== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25155== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==25155== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25155== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25155== by 0x13DDFA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25155== by 0x138DF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25155== by 0x13B99A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25155== by 0x13B895: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25155== by 0x13BEA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25155== by 0x1375F5: main (TestWritingPdeSolversTwoTutorial.cpp:18) +==25155== +==25155== Open file descriptor 113: +==25155== +==25155== +==25155== Open file descriptor 110: +==25155== +==25155== +==25155== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingPdeSolversTwoTutorial_valgrind.txt +==25155== +==25155== +==25155== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25155== +==25155== +==25155== +==25155== HEAP SUMMARY: +==25155== in use at exit: 618,738 bytes in 8,248 blocks +==25155== total heap usage: 128,428 allocs, 120,180 frees, 1,367,378,451 bytes allocated +==25155== +==25155== LEAK SUMMARY: +==25155== definitely lost: 0 bytes in 0 blocks +==25155== indirectly lost: 0 bytes in 0 blocks +==25155== possibly lost: 0 bytes in 0 blocks +==25155== still reachable: 24 bytes in 2 blocks +==25155== suppressed: 618,714 bytes in 8,246 blocks +==25155== Reachable blocks (those to which a pointer was found) are not shown. +==25155== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25155== +==25155== For lists of detected and suppressed errors, rerun with: -s +==25155== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 38) diff --git a/log-files/2024-09-23_05-40-48/TestWritingTestsTutorial_valgrind.txt b/log-files/2024-09-23_05-40-48/TestWritingTestsTutorial_valgrind.txt new file mode 100644 index 000000000..c7fd3c19b --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestWritingTestsTutorial_valgrind.txt @@ -0,0 +1,36 @@ +==24295== Memcheck, a memory error detector +==24295== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24295== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24295== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestWritingTestsTutorial -malloc_debug -malloc_dump -memory_info +==24295== Parent PID: 24048 +==24295== +==24295== +==24295== FILE DESCRIPTORS: 7 open (3 std) at exit. +==24295== Open file descriptor 113: +==24295== +==24295== +==24295== Open file descriptor 110: +==24295== +==24295== +==24295== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingTestsTutorial_valgrind.txt +==24295== +==24295== +==24295== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24295== +==24295== +==24295== +==24295== HEAP SUMMARY: +==24295== in use at exit: 24 bytes in 2 blocks +==24295== total heap usage: 3,071 allocs, 3,069 frees, 350,881 bytes allocated +==24295== +==24295== LEAK SUMMARY: +==24295== definitely lost: 0 bytes in 0 blocks +==24295== indirectly lost: 0 bytes in 0 blocks +==24295== possibly lost: 0 bytes in 0 blocks +==24295== still reachable: 24 bytes in 2 blocks +==24295== suppressed: 0 bytes in 0 blocks +==24295== Reachable blocks (those to which a pointer was found) are not shown. +==24295== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24295== +==24295== For lists of detected and suppressed errors, rerun with: -s +==24295== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-23_05-40-48/TestXmlMeshWriters_valgrind.txt b/log-files/2024-09-23_05-40-48/TestXmlMeshWriters_valgrind.txt new file mode 100644 index 000000000..c2cabeaea --- /dev/null +++ b/log-files/2024-09-23_05-40-48/TestXmlMeshWriters_valgrind.txt @@ -0,0 +1,73 @@ +==24837== Memcheck, a memory error detector +==24837== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24837== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24837== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestXmlMeshWriters -malloc_debug -malloc_dump -memory_info +==24837== Parent PID: 24048 +==24837== +==24837== +==24837== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24837== Open file descriptor 12: +==24837== at 0x708F07D: pipe (pipe.c:29) +==24837== by 0x100C307D: ??? +==24837== by 0xBCEF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24837== by 0x86DB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24837== by 0x8674D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24837== by 0x736BD38: PetscInitialize (pinit.c:924) +==24837== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24837== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24837== by 0x141D14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24837== by 0x13CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24837== by 0x13FA20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24837== by 0x13F8C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24837== by 0x13FF57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24837== by 0x13B075: main (TestXmlMeshWriters.cpp:19) +==24837== +==24837== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24837== at 0x7093A1C: __open_nocancel (open64_nocancel.c:39) +==24837== by 0x7017BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24837== by 0x6590822: ??? +==24837== by 0x659096F: ??? +==24837== by 0xBD946DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24837== by 0xBD94938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24837== by 0xBD4A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24837== by 0xBCEF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24837== by 0x86DB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24837== by 0x8674D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24837== by 0x736BD38: PetscInitialize (pinit.c:924) +==24837== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24837== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24837== by 0x141D14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24837== by 0x13CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24837== by 0x13FA20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24837== by 0x13F8C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24837== by 0x13FF57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24837== by 0x13B075: main (TestXmlMeshWriters.cpp:19) +==24837== +==24837== Open file descriptor 113: +==24837== +==24837== +==24837== Open file descriptor 110: +==24837== +==24837== +==24837== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestXmlMeshWriters_valgrind.txt +==24837== +==24837== +==24837== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24837== +==24837== +==24837== +==24837== HEAP SUMMARY: +==24837== in use at exit: 618,226 bytes in 8,238 blocks +==24837== total heap usage: 453,224 allocs, 444,986 frees, 1,402,960,800 bytes allocated +==24837== +==24837== LEAK SUMMARY: +==24837== definitely lost: 0 bytes in 0 blocks +==24837== indirectly lost: 0 bytes in 0 blocks +==24837== possibly lost: 0 bytes in 0 blocks +==24837== still reachable: 24 bytes in 2 blocks +==24837== suppressed: 618,202 bytes in 8,236 blocks +==24837== Reachable blocks (those to which a pointer was found) are not shown. +==24837== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24837== +==24837== For lists of detected and suppressed errors, rerun with: -s +==24837== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 70 from 38) diff --git a/log-files/2024-09-23_05-40-48/Test_valgrind.txt b/log-files/2024-09-23_05-40-48/Test_valgrind.txt new file mode 100644 index 000000000..f64a7a9ff --- /dev/null +++ b/log-files/2024-09-23_05-40-48/Test_valgrind.txt @@ -0,0 +1,73 @@ +==42758== Memcheck, a memory error detector +==42758== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42758== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42758== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCodegen -malloc_debug -malloc_dump -memory_info +==42758== Parent PID: 24048 +==42758== +==42758== +==42758== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42758== Open file descriptor 12: +==42758== at 0x9E0107D: pipe (pipe.c:29) +==42758== by 0x1432407D: ??? +==42758== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42758== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42758== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42758== by 0x85DDD38: PetscInitialize (pinit.c:924) +==42758== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42758== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42758== by 0x135779: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42758== by 0x12FB0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42758== by 0x132D44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42758== by 0x132BE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42758== by 0x13327B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42758== by 0x12ADA5: main (Test.cpp:19) +==42758== +==42758== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42758== at 0x9E05A1C: __open_nocancel (open64_nocancel.c:39) +==42758== by 0x9D89BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42758== by 0x848A822: ??? +==42758== by 0x848A96F: ??? +==42758== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42758== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42758== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42758== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42758== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42758== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42758== by 0x85DDD38: PetscInitialize (pinit.c:924) +==42758== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42758== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42758== by 0x135779: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42758== by 0x12FB0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42758== by 0x132D44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42758== by 0x132BE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42758== by 0x13327B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42758== by 0x12ADA5: main (Test.cpp:19) +==42758== +==42758== Open file descriptor 113: +==42758== +==42758== +==42758== Open file descriptor 110: +==42758== +==42758== +==42758== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test_valgrind.txt +==42758== +==42758== +==42758== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42758== +==42758== +==42758== +==42758== HEAP SUMMARY: +==42758== in use at exit: 623,608 bytes in 8,246 blocks +==42758== total heap usage: 941,056 allocs, 932,810 frees, 2,144,096,992 bytes allocated +==42758== +==42758== LEAK SUMMARY: +==42758== definitely lost: 0 bytes in 0 blocks +==42758== indirectly lost: 0 bytes in 0 blocks +==42758== possibly lost: 0 bytes in 0 blocks +==42758== still reachable: 5,367 bytes in 14 blocks +==42758== suppressed: 618,241 bytes in 8,232 blocks +==42758== Reachable blocks (those to which a pointer was found) are not shown. +==42758== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42758== +==42758== For lists of detected and suppressed errors, rerun with: -s +==42758== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2024-09-23_05-40-48/index.html b/log-files/2024-09-23_05-40-48/index.html new file mode 100644 index 000000000..7a6ffc468 --- /dev/null +++ b/log-files/2024-09-23_05-40-48/index.html @@ -0,0 +1,425 @@ + + + + + + Chaste valgrind memtest output + + +

Memtest output for commit 140cb4550f479528f0873548f39c3abdd0d14826 on branch codegen-help-links

+
+

Summary of 398 tests:

+

green: 398

+

orange: 0

+

red: 0

+
+

Test1D3DLinearEllipticSolver: No leaks found (test output)

+

Test1dMonodomainShannonCvodeBenchmarks: No leaks found (test output)

+

Test2dVertexBasedSimulationWithSrnModels: No leaks found (test output)

+

Test: No leaks found (test output)

+

TestAbstractAnalyticJacobian: No leaks found (test output)

+

TestAbstractContinuumMechanicsAssembler: No leaks found (test output)

+

TestAbstractContractionCellFactory: No leaks found (test output)

+

TestAbstractCvodeSystem: No leaks found (test output)

+

TestAbstractFeCableIntegralAssembler: No leaks found (test output)

+

TestAbstractFeSurfaceIntegralAssembler: No leaks found (test output)

+

TestAbstractFeVolumeIntegralAssembler: No leaks found (test output)

+

TestAbstractFunctionalCalculator: No leaks found (test output)

+

TestAbstractIvpOdeSolver: No leaks found (test output)

+

TestAbstractOdeSystem: No leaks found (test output)

+

TestAbstractPurkinjeCellFactory: No leaks found (test output)

+

TestAcinarUnitModels: No leaks found (test output)

+

TestAirwayBranch: No leaks found (test output)

+

TestAirwayGeneration: No leaks found (test output)

+

TestAirwayGenerator: No leaks found (test output)

+

TestAirwayPropertiesCalculator: No leaks found (test output)

+

TestAirwayRemesher: No leaks found (test output)

+

TestAirwayTreeWalker: No leaks found (test output)

+

TestAirwayWallModels: No leaks found (test output)

+

TestAlarcon2004OxygenBasedCellCycleOdeSystem: No leaks found (test output)

+

TestArchiveCell: No leaks found (test output)

+

TestArchiveFormat: No leaks found (test output)

+

TestArchiving: No leaks found (test output)

+

TestArchivingExtendedBidomain: No leaks found (test output)

+

TestArchivingHelperClasses: No leaks found (test output)

+

TestBackwardEulerIvpOdeSolver: No leaks found (test output)

+

TestBenchmarkPreconditionersForMeshIndependence: No leaks found (test output)

+

TestBidomainDistributedMesh: No leaks found (test output)

+

TestBidomainProblem: No leaks found (test output)

+

TestBidomainTissue: No leaks found (test output)

+

TestBidomainWithBathProblem: No leaks found (test output)

+

TestBidomainWithSvi: No leaks found (test output)

+

TestBoundaryConditionsContainer: No leaks found (test output)

+

TestBuskeForces: No leaks found (test output)

+

TestCaBasedCellPopulation: No leaks found (test output)

+

TestCaBasedDivisionRules: No leaks found (test output)

+

TestCaUpdateRules: No leaks found (test output)

+

TestCableTestProblem: No leaks found (test output)

+

TestCardiacElectroMechanicsFurtherFunctionality: No leaks found (test output)

+

TestCardiacElectroMechanicsProblem: No leaks found (test output)

+

TestCardiacSimulation: No leaks found (test output)

+

TestCardiacSimulationArchiver: No leaks found (test output)

+

TestCell: No leaks found (test output)

+

TestCellBasedCellProperties: No leaks found (test output)

+

TestCellBasedEllipticPdeSolver: No leaks found (test output)

+

TestCellBasedEllipticPdes: No leaks found (test output)

+

TestCellBasedEventHandler: No leaks found (test output)

+

TestCellBasedParabolicPdes: No leaks found (test output)

+

TestCellBetaCateninWriter: No leaks found (test output)

+

TestCellCycleModelOdeSolver: No leaks found (test output)

+

TestCellDataMaps: No leaks found (test output)

+

TestCellForCrypt: No leaks found (test output)

+

TestCellKillers: No leaks found (test output)

+

TestCellMutationStates: No leaks found (test output)

+

TestCellPopulationBoundaryConditions: No leaks found (test output)

+

TestCellPopulationCountWriters: No leaks found (test output)

+

TestCellPopulationEventWriters: No leaks found (test output)

+

TestCellPopulationWriters: No leaks found (test output)

+

TestCellProliferativeTypes: No leaks found (test output)

+

TestCellProperties: No leaks found (test output)

+

TestCellPropertyCollection: No leaks found (test output)

+

TestCellPropertyRegistry: No leaks found (test output)

+

TestCellSrn: No leaks found (test output)

+

TestCellWriters: No leaks found (test output)

+

TestCellsGenerator: No leaks found (test output)

+

TestCellwiseDataGradient: No leaks found (test output)

+

TestCentreBasedDivisionRules: No leaks found (test output)

+

TestChasteBuildInfo: No leaks found (test output)

+

TestChastePoint: No leaks found (test output)

+

TestChasteRegions: No leaks found (test output)

+

TestChebyshevIteration: No leaks found (test output)

+

TestCheckpointing: No leaks found (test output)

+

TestCitations: No leaks found (test output)

+

TestCodegenPresent: No leaks found (test output)

+

TestColumnDataReaderWriter: No leaks found (test output)

+

TestCombinedOdeSystem: No leaks found (test output)

+

TestCommandLineArguments: No leaks found (test output)

+

TestCommandLineArgumentsTutorial: No leaks found (test output)

+

TestCompressibleNonlinearElasticitySolver: No leaks found (test output)

+

TestConductivityTensors: No leaks found (test output)

+

TestConstBoundaryCondition: No leaks found (test output)

+

TestContinuumMechanicsNeumannBcsAssembler: No leaks found (test output)

+

TestContractionModels: No leaks found (test output)

+

TestConvergenceTester: No leaks found (test output)

+

TestCoupledCableTestProblem: No leaks found (test output)

+

TestCreatingAndUsingANewCellBasedSimulationModifierTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellCycleModelTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellKillerTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellMutationStateTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellPropertyTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewForceTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewSrnModelTutorial: No leaks found (test output)

+

TestCreatingAndUsingNewCellBasedWritersTutorial: No leaks found (test output)

+

TestCryptCellsGenerator: No leaks found (test output)

+

TestCryptDivisionRules: No leaks found (test output)

+

TestCryptProjectionForce: No leaks found (test output)

+

TestCryptProjectionStatistics: No leaks found (test output)

+

TestCryptSimulation1d: No leaks found (test output)

+

TestCryptSimulation2dWithMeshBasedCellPopulation: No leaks found (test output)

+

TestCryptSimulation2dWithVertexBasedCellPopulation: No leaks found (test output)

+

TestCryptSimulationBoundaryCondition: No leaks found (test output)

+

TestCryptStatistics: No leaks found (test output)

+

TestCvodeAdaptor: No leaks found (test output)

+

TestCvodeCells: No leaks found (test output)

+

TestCvodeCellsWithDataClamp: No leaks found (test output)

+

TestCvodeWithJacobian: No leaks found (test output)

+

TestCwd: No leaks found (test output)

+

TestCylindrical2dMesh: No leaks found (test output)

+

TestCylindrical2dNodesOnlyMesh: No leaks found (test output)

+

TestCylindrical2dVertexMesh: No leaks found (test output)

+

TestCylindricalHoneycombMeshGenerator: No leaks found (test output)

+

TestCylindricalHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestDebug: No leaks found (test output)

+

TestDeltaNotchModifier: No leaks found (test output)

+

TestDeltaNotchOdeSystem: No leaks found (test output)

+

TestDiscreteSystemForceCalculator: No leaks found (test output)

+

TestDistanceMapCalculator: No leaks found (test output)

+

TestDistributedBoxCollection: No leaks found (test output)

+

TestDistributedQuadraticMesh: No leaks found (test output)

+

TestDistributedTetrahedralMesh: No leaks found (test output)

+

TestDistributedVector: No leaks found (test output)

+

TestDivisionBiasTrackingModifier: No leaks found (test output)

+

TestDynamicVentilation: No leaks found (test output)

+

TestDynamicallyLoadedCellModels: No leaks found (test output)

+

TestEdge: No leaks found (test output)

+

TestEdgeInteriorSrn: No leaks found (test output)

+

TestElectroMechanicsExactSolution: No leaks found (test output)

+

TestElectroMechanicsProblemDefinition: No leaks found (test output)

+

TestElectrodes: No leaks found (test output)

+

TestElement: No leaks found (test output)

+

TestElementAttributes: No leaks found (test output)

+

TestEllipticBoxDomainPdeModifier: No leaks found (test output)

+

TestEllipticGrowingDomainPdeModifier: No leaks found (test output)

+

TestException: No leaks found (test output)

+

TestExecutableSupport: No leaks found (test output)

+

TestExplicitCardiacMechanicsSolver: No leaks found (test output)

+

TestExtendedBidomainProblem: No leaks found (test output)

+

TestExtendedBidomainTissue: No leaks found (test output)

+

TestExtendedVsBidomainProblem: No leaks found (test output)

+

TestExtrinsicPullModifier: No leaks found (test output)

+

TestFemlabMeshReader: No leaks found (test output)

+

TestFibreReader: No leaks found (test output)

+

TestFibreReaderAbilityExtendedBidomainProblem: No leaks found (test output)

+

TestFibreWriter: No leaks found (test output)

+

TestFileComparison: No leaks found (test output)

+

TestFileFinder: No leaks found (test output)

+

TestFineCoarseMeshPair: No leaks found (test output)

+

TestFloatingPointDivisionByZero: No leaks found (test output)

+

TestFloatingPointDivisionByZeroPetsc: No leaks found (test output)

+

TestFluidSource: No leaks found (test output)

+

TestForces: No leaks found (test output)

+

TestFourthOrderTensor: No leaks found (test output)

+

TestGIModifiedModels: No leaks found (test output)

+

TestGRL1IvpOdeSolver: No leaks found (test output)

+

TestGRL2IvpOdeSolver: No leaks found (test output)

+

TestGaussianQuadratureRule: No leaks found (test output)

+

TestGeneralizedRushLarsen: No leaks found (test output)

+

TestGenericEventHandler: No leaks found (test output)

+

TestGmshMeshReader: No leaks found (test output)

+

TestGoldbeter1991OdeSystem: No leaks found (test output)

+

TestHdf5Converters: No leaks found (test output)

+

TestHdf5DataReader: No leaks found (test output)

+

TestHdf5DataWriter: No leaks found (test output)

+

TestHdf5ToVisualizerConverters: No leaks found (test output)

+

TestHeartConfig: No leaks found (test output)

+

TestHeartEventHandler: No leaks found (test output)

+

TestHeartFileFinder: No leaks found (test output)

+

TestHeartGeometryInformation: No leaks found (test output)

+

TestHeartRegionCodes: No leaks found (test output)

+

TestHelloWorld: No leaks found (test output)

+

TestHeterogeneousConductivities: No leaks found (test output)

+

TestHeun2IvpOdeSolver: No leaks found (test output)

+

TestHodgkinHuxleySquidAxon1952OriginalOdeSystem: No leaks found (test output)

+

TestHoneycombMeshGenerator: No leaks found (test output)

+

TestHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestImmersedBoundary2dArrays: No leaks found (test output)

+

TestImmersedBoundaryCellPopulation: No leaks found (test output)

+

TestImmersedBoundaryDivisionRules: No leaks found (test output)

+

TestImmersedBoundaryElement: No leaks found (test output)

+

TestImmersedBoundaryFftInterface: No leaks found (test output)

+

TestImmersedBoundaryForces: No leaks found (test output)

+

TestImmersedBoundaryHoneycombMeshGenerator: No leaks found (test output)

+

TestImmersedBoundaryMesh: No leaks found (test output)

+

TestImmersedBoundaryMeshReader: No leaks found (test output)

+

TestImmersedBoundaryMeshWriter: No leaks found (test output)

+

TestImmersedBoundaryPalisadeMeshGenerator: No leaks found (test output)

+

TestImmersedBoundarySimulationModifier: No leaks found (test output)

+

TestImmersedBoundarySvgWriter: No leaks found (test output)

+

TestImpedancePostProcessor: No leaks found (test output)

+

TestImplicitCardiacMechanicsSolver: No leaks found (test output)

+

TestIncompressibleNonlinearElasticitySolver: No leaks found (test output)

+

TestIonicModels: No leaks found (test output)

+

TestIonicModelsWithSacs: No leaks found (test output)

+

TestLinearBasisFunction: No leaks found (test output)

+

TestLinearParabolicPdeSystemForCoupledOdeSystem: No leaks found (test output)

+

TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver: No leaks found (test output)

+

TestLinearSpringWithVariableSpringConstantsForce: No leaks found (test output)

+

TestLinearSystem: No leaks found (test output)

+

TestLobePropertiesCalculator: No leaks found (test output)

+

TestLogFile: No leaks found (test output)

+

TestMajorAirwaysCentreLinesCleaner: No leaks found (test output)

+

TestMaterialLaws: No leaks found (test output)

+

TestMathsCustomFunctions: No leaks found (test output)

+

TestMatrixVentilationProblem: No leaks found (test output)

+

TestMemfemMeshReader: No leaks found (test output)

+

TestMeshBasedCellPopulation: No leaks found (test output)

+

TestMeshBasedCellPopulationWithGhostNodes: No leaks found (test output)

+

TestMeshUtilityFunctions: No leaks found (test output)

+

TestMeshWriters: No leaks found (test output)

+

TestMirams2010WntOdeSystem: No leaks found (test output)

+

TestMixedDimensionMesh: No leaks found (test output)

+

TestMockEulerIvpOdeSolver: No leaks found (test output)

+

TestModernCppFeatures: No leaks found (test output)

+

TestModifiers: No leaks found (test output)

+

TestMonodomainConductionVelocity: No leaks found (test output)

+

TestMonodomainFitzHughNagumo: No leaks found (test output)

+

TestMonodomainMassLumping: No leaks found (test output)

+

TestMonodomainProblem: No leaks found (test output)

+

TestMonodomainPurkinjeAssemblersAndSolver: No leaks found (test output)

+

TestMonodomainPurkinjeProblem: No leaks found (test output)

+

TestMonodomainStiffnessMatrixAssembler: No leaks found (test output)

+

TestMonodomainTissue: No leaks found (test output)

+

TestMonodomainWithSvi: No leaks found (test output)

+

TestMonodomainWithTimeAdaptivity: No leaks found (test output)

+

TestMoreMechanics: No leaks found (test output)

+

TestMultiLobeAirwayGenerator: No leaks found (test output)

+

TestMutableMesh: No leaks found (test output)

+

TestMutableMeshRemesh: No leaks found (test output)

+

TestMutableVertexMesh: No leaks found (test output)

+

TestMutableVertexMeshOperationsWithPopulationSrn: No leaks found (test output)

+

TestMutableVertexMeshReMesh: No leaks found (test output)

+

TestMutableVertexMeshRosetteMethods: No leaks found (test output)

+

TestNeumannStimulus: No leaks found (test output)

+

TestNhsModelWithBackwardSolver: No leaks found (test output)

+

TestNode: No leaks found (test output)

+

TestNodeAttributes: No leaks found (test output)

+

TestNodeBasedCellPopulation: No leaks found (test output)

+

TestNodeBasedCellPopulationParallelMethods: No leaks found (test output)

+

TestNodeBasedCellPopulationWithBuskeUpdate: No leaks found (test output)

+

TestNodeBasedCellPopulationWithParticles: No leaks found (test output)

+

TestNodesOnlyMesh: No leaks found (test output)

+

TestNonCachedTetrahedralMesh: No leaks found (test output)

+

TestNonlinearElasticityTools: No leaks found (test output)

+

TestNonlinearSolvers: No leaks found (test output)

+

TestNormallyDistributedTargetAreaModifier: No leaks found (test output)

+

TestNumericFileComparison: No leaks found (test output)

+

TestNumericalMethods: No leaks found (test output)

+

TestObjectCommunicator: No leaks found (test output)

+

TestObsoleteBoxCollection: No leaks found (test output)

+

TestOdeBasedCellCycleModels: No leaks found (test output)

+

TestOdeBasedCellCycleModelsForCrypt: No leaks found (test output)

+

TestOdeBasedSrnModels: No leaks found (test output)

+

TestOdeLinearSystemSolver: No leaks found (test output)

+

TestOffLatticeCryptProjectionSimulation: No leaks found (test output)

+

TestOffLatticeRandomFieldGenerator: No leaks found (test output)

+

TestOffLatticeSimulation3d: No leaks found (test output)

+

TestOffLatticeSimulation: No leaks found (test output)

+

TestOffLatticeSimulationWithBuskeForces: No leaks found (test output)

+

TestOffLatticeSimulationWithNodeBasedCellPopulation: No leaks found (test output)

+

TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d: No leaks found (test output)

+

TestOffLatticeSimulationWithPdes: No leaks found (test output)

+

TestOffLatticeSimulationWithVertexBasedCellPopulation: No leaks found (test output)

+

TestOnLatticeSimulationWithCaBasedCellPopulation: No leaks found (test output)

+

TestOnLatticeSimulationWithPdes: No leaks found (test output)

+

TestOnLatticeSimulationWithPottsBasedCellPopulation: No leaks found (test output)

+

TestOperatorSplittingMonodomainSolver: No leaks found (test output)

+

TestOutputDirectoryFifoQueue: No leaks found (test output)

+

TestOutputFileHandler: No leaks found (test output)

+

TestPCBlockDiagonal: No leaks found (test output)

+

TestPCLDUFactorisation: No leaks found (test output)

+

TestPCTwoLevelsBlockDiagonal: No leaks found (test output)

+

TestPapillaryFibreCalculator: No leaks found (test output)

+

TestParabolicBoxDomainPdeModifier: No leaks found (test output)

+

TestParabolicGrowingDomainPdeModifier: No leaks found (test output)

+

TestParallelCellsGenerator: No leaks found (test output)

+

TestParallelColumnDataReaderWriter: No leaks found (test output)

+

TestParallelWriterPerformance: No leaks found (test output)

+

TestPdeSimulationTime: No leaks found (test output)

+

TestPdeTestClasses: No leaks found (test output)

+

TestPerElementWriter: No leaks found (test output)

+

TestPeriodicNodeBasedCellPopulationParallelMethods: No leaks found (test output)

+

TestPeriodicNodesOnlyMesh: No leaks found (test output)

+

TestPetscEvents: No leaks found (test output)

+

TestPetscMatTools: No leaks found (test output)

+

TestPetscSetup: No leaks found (test output)

+

TestPetscTools2: No leaks found (test output)

+

TestPetscTools: No leaks found (test output)

+

TestPetscVecTools: No leaks found (test output)

+

TestPlaneStimulusCellFactory: No leaks found (test output)

+

TestPostProcessingWriter: No leaks found (test output)

+

TestPottsBasedCellPopulation: No leaks found (test output)

+

TestPottsBasedCryptSimulation: No leaks found (test output)

+

TestPottsElement: No leaks found (test output)

+

TestPottsMesh: No leaks found (test output)

+

TestPottsMeshGenerator: No leaks found (test output)

+

TestPottsMeshReader: No leaks found (test output)

+

TestPottsMeshWriter: No leaks found (test output)

+

TestPottsUpdateRules: No leaks found (test output)

+

TestProblemDefinitions: No leaks found (test output)

+

TestProgressReporter: No leaks found (test output)

+

TestPropagationPropertiesCalculator: No leaks found (test output)

+

TestPseudoEcgCalculator: No leaks found (test output)

+

TestQuadraticBasisFunction: No leaks found (test output)

+

TestQuadraticMesh: No leaks found (test output)

+

TestQuadraturePointsGroup: No leaks found (test output)

+

TestRKC21IvpOdeSolver: No leaks found (test output)

+

TestRandomNumberGenerator: No leaks found (test output)

+

TestReplicatableVector: No leaks found (test output)

+

TestRepresentativeImmersedBoundarySimulations: No leaks found (test output)

+

TestRestitutionStimuli: No leaks found (test output)

+

TestRungeKuttaFehlbergIvpOdeSolver: No leaks found (test output)

+

TestRunningContactInhibitionSimulationsTutorial: No leaks found (test output)

+

TestRunningCryptSimulationsWithMutationsTutorial: No leaks found (test output)

+

TestRunningDeltaNotchSimulationsTutorial: No leaks found (test output)

+

TestRunningDifferentialAdhesionSimulationsTutorial: No leaks found (test output)

+

TestRunningImmersedBoundarySimulationsTutorial: No leaks found (test output)

+

TestRunningMeshBasedCryptSimulationsTutorial: No leaks found (test output)

+

TestRunningMeshBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningNodeBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningPottsBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningTumourSpheroidSimulationsTutorial: No leaks found (test output)

+

TestRunningVertexBasedCryptSimulationsTutorial: No leaks found (test output)

+

TestRunningVertexBasedSimulationsTutorial: No leaks found (test output)

+

TestRushLarsen: No leaks found (test output)

+

TestShovingCaBasedDivisionRules: No leaks found (test output)

+

TestSimpleCellCycleModels: No leaks found (test output)

+

TestSimpleCellCycleModelsForCrypt: No leaks found (test output)

+

TestSimpleDataWriter: No leaks found (test output)

+

TestSimpleImpedanceProblem: No leaks found (test output)

+

TestSimpleLinearEllipticSolver: No leaks found (test output)

+

TestSimpleLinearParabolicSolver: No leaks found (test output)

+

TestSimpleNonlinearEllipticSolver: No leaks found (test output)

+

TestSimpleTargetAreaModifier: No leaks found (test output)

+

TestSimulationTime: No leaks found (test output)

+

TestSimulationsWithEllipticBoxDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithEllipticGrowingDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithParabolicBoxDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithParabolicGrowingDomainPdeModifier: No leaks found (test output)

+

TestSingleOdeWntCellCycleModel: No leaks found (test output)

+

TestSloughingCellKillers: No leaks found (test output)

+

TestSolveLaplacianWithQuadratics: No leaks found (test output)

+

TestSolvingCoupledPdes: No leaks found (test output)

+

TestSolvingNonlinearPdesTutorial: No leaks found (test output)

+

TestSolvingOdesTutorial: No leaks found (test output)

+

TestSolvingStiffOdeSystems: No leaks found (test output)

+

TestSpiralWaveAndPhase: No leaks found (test output)

+

TestSteadyStateRunner: No leaks found (test output)

+

TestStepSizeException: No leaks found (test output)

+

TestStimulus: No leaks found (test output)

+

TestStimulusBoundaryCondition: No leaks found (test output)

+

TestStimulusFactory: No leaks found (test output)

+

TestStokesFlowAssembler: No leaks found (test output)

+

TestStokesFlowSolver: No leaks found (test output)

+

TestStreeterFibreGenerator: No leaks found (test output)

+

TestSuperellipseGenerator: No leaks found (test output)

+

TestT2SwapCellKiller: No leaks found (test output)

+

TestTargetAreaLinearGrowthModifier: No leaks found (test output)

+

TestTetrahedralMesh: No leaks found (test output)

+

TestTimeAdaptivityController: No leaks found (test output)

+

TestTimeStepper: No leaks found (test output)

+

TestTimer: No leaks found (test output)

+

TestToroidal2dMesh: No leaks found (test output)

+

TestToroidal2dVertexMesh: No leaks found (test output)

+

TestToroidalHoneycombMeshGenerator: No leaks found (test output)

+

TestToroidalHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestTransformations: No leaks found (test output)

+

TestTrianglesMeshReader: No leaks found (test output)

+

TestTysonNovak2001OdeSystem: No leaks found (test output)

+

TestUblasCustomFunctions: No leaks found (test output)

+

TestUniformGridRandomFieldGenerator: No leaks found (test output)

+

TestVanLeeuwen2009WntSwatCellCycleOdeSystem: No leaks found (test output)

+

TestVentilationProblem: No leaks found (test output)

+

TestVertexBasedCellPopulation: No leaks found (test output)

+

TestVertexBasedCellPopulationForCrypt: No leaks found (test output)

+

TestVertexBasedDivisionRules: No leaks found (test output)

+

TestVertexCryptBoundaryForce: No leaks found (test output)

+

TestVertexElement: No leaks found (test output)

+

TestVertexMesh: No leaks found (test output)

+

TestVertexMeshReader: No leaks found (test output)

+

TestVertexMeshWriter: No leaks found (test output)

+

TestVisualizingWithParaviewTutorial: No leaks found (test output)

+

TestVoltageInterpolaterOntoMechanicsMesh: No leaks found (test output)

+

TestVolumeTrackingModifier: No leaks found (test output)

+

TestVoronoiVertexMeshGenerator: No leaks found (test output)

+

TestVtkMeshReader: No leaks found (test output)

+

TestVtkNonlinearElasticitySolutionWriter: No leaks found (test output)

+

TestWarnings: No leaks found (test output)

+

TestWntCellCycleOdeSystem: No leaks found (test output)

+

TestWntConcentration: No leaks found (test output)

+

TestWritingPdeSolversTutorial: No leaks found (test output)

+

TestWritingPdeSolversTwoTutorial: No leaks found (test output)

+

TestWritingTestsTutorial: No leaks found (test output)

+

TestXmlMeshWriters: No leaks found (test output)


+ + diff --git a/log-files/index.html b/log-files/index.html index 8d9e1f7fa..8161f86fd 100644 --- a/log-files/index.html +++ b/log-files/index.html @@ -15,6 +15,16 @@

Index of Valgrind Memcheck output

September 2024

+ + + + + +
+ 2024-09-23_05-40-48 + greencodegen-help-links + 140cb4550f479528f0873548f39c3abdd0d14826 +
2024-09-22_17-48-38