diff --git a/log-files/2024-09-20_21-41-09/Test1D3DLinearEllipticSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/Test1D3DLinearEllipticSolver_valgrind.txt new file mode 100644 index 000000000..c57deff12 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/Test1D3DLinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24987== Memcheck, a memory error detector +==24987== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24987== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24987== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/Test1D3DLinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==24987== Parent PID: 24036 +==24987== +==24987== +==24987== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24987== Open file descriptor 12: +==24987== at 0x84E707D: pipe (pipe.c:29) +==24987== by 0x104D507D: ??? +==24987== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24987== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24987== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24987== by 0x6AACD38: PetscInitialize (pinit.c:924) +==24987== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24987== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24987== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24987== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24987== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24987== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24987== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24987== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18) +==24987== +==24987== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24987== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==24987== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24987== by 0x7D3C822: ??? +==24987== by 0x7D3C96F: ??? +==24987== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24987== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24987== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24987== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24987== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24987== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24987== by 0x6AACD38: PetscInitialize (pinit.c:924) +==24987== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24987== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24987== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24987== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24987== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24987== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24987== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24987== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18) +==24987== +==24987== Open file descriptor 113: +==24987== +==24987== +==24987== Open file descriptor 110: +==24987== +==24987== +==24987== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1D3DLinearEllipticSolver_valgrind.txt +==24987== +==24987== +==24987== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24987== +==24987== +==24987== +==24987== HEAP SUMMARY: +==24987== in use at exit: 618,254 bytes in 8,238 blocks +==24987== total heap usage: 51,119 allocs, 42,881 frees, 1,339,258,840 bytes allocated +==24987== +==24987== LEAK SUMMARY: +==24987== definitely lost: 0 bytes in 0 blocks +==24987== indirectly lost: 0 bytes in 0 blocks +==24987== possibly lost: 0 bytes in 0 blocks +==24987== still reachable: 24 bytes in 2 blocks +==24987== suppressed: 618,230 bytes in 8,236 blocks +==24987== Reachable blocks (those to which a pointer was found) are not shown. +==24987== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24987== +==24987== For lists of detected and suppressed errors, rerun with: -s +==24987== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt b/log-files/2024-09-20_21-41-09/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt new file mode 100644 index 000000000..c992f7832 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt @@ -0,0 +1,73 @@ +==43570== Memcheck, a memory error detector +==43570== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43570== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43570== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/Test1dMonodomainShannonCvodeBenchmarks -malloc_debug -malloc_dump -memory_info +==43570== Parent PID: 24036 +==43570== +==43570== +==43570== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43570== Open file descriptor 12: +==43570== at 0xA7C307D: pipe (pipe.c:29) +==43570== by 0x1432407D: ??? +==43570== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43570== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43570== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43570== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==43570== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43570== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43570== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43570== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43570== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43570== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43570== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43570== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18) +==43570== +==43570== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43570== at 0xA7C7A1C: __open_nocancel (open64_nocancel.c:39) +==43570== by 0xA74BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43570== by 0xA0E5822: ??? +==43570== by 0xA0E596F: ??? +==43570== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43570== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43570== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43570== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43570== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43570== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43570== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==43570== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43570== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43570== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43570== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43570== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43570== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43570== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43570== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18) +==43570== +==43570== Open file descriptor 113: +==43570== +==43570== +==43570== Open file descriptor 110: +==43570== +==43570== +==43570== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt +==43570== +==43570== +==43570== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43570== +==43570== +==43570== +==43570== HEAP SUMMARY: +==43570== in use at exit: 618,743 bytes in 8,244 blocks +==43570== total heap usage: 319,602 allocs, 311,358 frees, 1,398,098,417 bytes allocated +==43570== +==43570== LEAK SUMMARY: +==43570== definitely lost: 0 bytes in 0 blocks +==43570== indirectly lost: 0 bytes in 0 blocks +==43570== possibly lost: 0 bytes in 0 blocks +==43570== still reachable: 24 bytes in 2 blocks +==43570== suppressed: 618,719 bytes in 8,242 blocks +==43570== Reachable blocks (those to which a pointer was found) are not shown. +==43570== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43570== +==43570== For lists of detected and suppressed errors, rerun with: -s +==43570== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 42 from 34) diff --git a/log-files/2024-09-20_21-41-09/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt b/log-files/2024-09-20_21-41-09/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt new file mode 100644 index 000000000..afbdffefe --- /dev/null +++ b/log-files/2024-09-20_21-41-09/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt @@ -0,0 +1,73 @@ +==26232== Memcheck, a memory error detector +==26232== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26232== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26232== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info +==26232== Parent PID: 24036 +==26232== +==26232== +==26232== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26232== Open file descriptor 12: +==26232== at 0xF7F907D: pipe (pipe.c:29) +==26232== by 0x196AD07D: ??? +==26232== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26232== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26232== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26232== by 0x10127D38: PetscInitialize (pinit.c:924) +==26232== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26232== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26232== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26232== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26232== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26232== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26232== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26232== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) +==26232== +==26232== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26232== at 0xF7FDA1C: __open_nocancel (open64_nocancel.c:39) +==26232== by 0xF781BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26232== by 0xF137822: ??? +==26232== by 0xF13796F: ??? +==26232== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26232== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26232== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26232== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26232== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26232== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26232== by 0x10127D38: PetscInitialize (pinit.c:924) +==26232== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26232== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26232== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26232== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26232== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26232== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26232== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26232== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) +==26232== +==26232== Open file descriptor 113: +==26232== +==26232== +==26232== Open file descriptor 110: +==26232== +==26232== +==26232== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt +==26232== +==26232== +==26232== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26232== +==26232== +==26232== +==26232== HEAP SUMMARY: +==26232== in use at exit: 618,350 bytes in 8,239 blocks +==26232== total heap usage: 1,124,534 allocs, 1,116,295 frees, 1,415,927,986 bytes allocated +==26232== +==26232== LEAK SUMMARY: +==26232== definitely lost: 0 bytes in 0 blocks +==26232== indirectly lost: 0 bytes in 0 blocks +==26232== possibly lost: 0 bytes in 0 blocks +==26232== still reachable: 56 bytes in 3 blocks +==26232== suppressed: 618,294 bytes in 8,236 blocks +==26232== Reachable blocks (those to which a pointer was found) are not shown. +==26232== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26232== +==26232== For lists of detected and suppressed errors, rerun with: -s +==26232== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestAbstractAnalyticJacobian_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAbstractAnalyticJacobian_valgrind.txt new file mode 100644 index 000000000..3318c0995 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAbstractAnalyticJacobian_valgrind.txt @@ -0,0 +1,73 @@ +==24900== Memcheck, a memory error detector +==24900== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24900== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24900== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractAnalyticJacobian -malloc_debug -malloc_dump -memory_info +==24900== Parent PID: 24036 +==24900== +==24900== +==24900== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24900== Open file descriptor 12: +==24900== at 0x4F1007D: pipe (pipe.c:29) +==24900== by 0xB1E607D: ??? +==24900== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24900== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24900== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24900== by 0x5308D38: PetscInitialize (pinit.c:924) +==24900== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24900== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24900== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24900== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24900== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24900== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24900== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24900== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18) +==24900== +==24900== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24900== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39) +==24900== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24900== by 0x4B77822: ??? +==24900== by 0x4B7796F: ??? +==24900== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24900== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24900== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24900== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24900== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24900== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24900== by 0x5308D38: PetscInitialize (pinit.c:924) +==24900== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24900== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24900== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24900== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24900== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24900== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24900== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24900== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18) +==24900== +==24900== Open file descriptor 113: +==24900== +==24900== +==24900== Open file descriptor 110: +==24900== +==24900== +==24900== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractAnalyticJacobian_valgrind.txt +==24900== +==24900== +==24900== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24900== +==24900== +==24900== +==24900== HEAP SUMMARY: +==24900== in use at exit: 617,902 bytes in 8,238 blocks +==24900== total heap usage: 45,031 allocs, 36,793 frees, 1,338,169,453 bytes allocated +==24900== +==24900== LEAK SUMMARY: +==24900== definitely lost: 0 bytes in 0 blocks +==24900== indirectly lost: 0 bytes in 0 blocks +==24900== possibly lost: 0 bytes in 0 blocks +==24900== still reachable: 24 bytes in 2 blocks +==24900== suppressed: 617,878 bytes in 8,236 blocks +==24900== Reachable blocks (those to which a pointer was found) are not shown. +==24900== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24900== +==24900== For lists of detected and suppressed errors, rerun with: -s +==24900== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestAbstractContinuumMechanicsAssembler_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAbstractContinuumMechanicsAssembler_valgrind.txt new file mode 100644 index 000000000..69920fee9 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAbstractContinuumMechanicsAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25278== Memcheck, a memory error detector +==25278== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25278== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25278== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestAbstractContinuumMechanicsAssembler -malloc_debug -malloc_dump -memory_info +==25278== Parent PID: 24036 +==25278== +==25278== +==25278== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25278== Open file descriptor 12: +==25278== at 0x84E707D: pipe (pipe.c:29) +==25278== by 0x104D507D: ??? +==25278== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25278== by 0x8B4E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25278== by 0x8AE7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25278== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25278== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25278== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25278== by 0x1507F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25278== by 0x14B24D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25278== by 0x14E462: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25278== by 0x14E302: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25278== by 0x14E999: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25278== by 0x149675: main (TestAbstractContinuumMechanicsAssembler.cpp:19) +==25278== +==25278== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25278== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25278== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25278== by 0x7D3C822: ??? +==25278== by 0x7D3C96F: ??? +==25278== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25278== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25278== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25278== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25278== by 0x8B4E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25278== by 0x8AE7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25278== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25278== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25278== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25278== by 0x1507F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25278== by 0x14B24D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25278== by 0x14E462: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25278== by 0x14E302: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25278== by 0x14E999: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25278== by 0x149675: main (TestAbstractContinuumMechanicsAssembler.cpp:19) +==25278== +==25278== Open file descriptor 113: +==25278== +==25278== +==25278== Open file descriptor 110: +==25278== +==25278== +==25278== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractContinuumMechanicsAssembler_valgrind.txt +==25278== +==25278== +==25278== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25278== +==25278== +==25278== +==25278== HEAP SUMMARY: +==25278== in use at exit: 618,254 bytes in 8,238 blocks +==25278== total heap usage: 50,433 allocs, 42,195 frees, 1,339,924,362 bytes allocated +==25278== +==25278== LEAK SUMMARY: +==25278== definitely lost: 0 bytes in 0 blocks +==25278== indirectly lost: 0 bytes in 0 blocks +==25278== possibly lost: 0 bytes in 0 blocks +==25278== still reachable: 24 bytes in 2 blocks +==25278== suppressed: 618,230 bytes in 8,236 blocks +==25278== Reachable blocks (those to which a pointer was found) are not shown. +==25278== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25278== +==25278== For lists of detected and suppressed errors, rerun with: -s +==25278== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestAbstractContractionCellFactory_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAbstractContractionCellFactory_valgrind.txt new file mode 100644 index 000000000..54b3d950e --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAbstractContractionCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==43752== Memcheck, a memory error detector +==43752== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43752== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43752== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestAbstractContractionCellFactory -malloc_debug -malloc_dump -memory_info +==43752== Parent PID: 24036 +==43752== +==43752== +==43752== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43752== Open file descriptor 12: +==43752== at 0xA8D007D: pipe (pipe.c:29) +==43752== by 0x1432407D: ??? +==43752== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43752== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43752== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43752== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43752== by 0xA1B71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43752== by 0xA1B7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43752== by 0x11F78E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43752== by 0x11A553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43752== by 0x11C978: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43752== by 0x11C873: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43752== by 0x11CE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43752== by 0x118D55: main (TestAbstractContractionCellFactory.cpp:18) +==43752== +==43752== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43752== at 0xA8D4A1C: __open_nocancel (open64_nocancel.c:39) +==43752== by 0xA858BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43752== by 0xA1F2822: ??? +==43752== by 0xA1F296F: ??? +==43752== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43752== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43752== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43752== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43752== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43752== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43752== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43752== by 0xA1B71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43752== by 0xA1B7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43752== by 0x11F78E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43752== by 0x11A553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43752== by 0x11C978: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43752== by 0x11C873: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43752== by 0x11CE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43752== by 0x118D55: main (TestAbstractContractionCellFactory.cpp:18) +==43752== +==43752== Open file descriptor 113: +==43752== +==43752== +==43752== Open file descriptor 110: +==43752== +==43752== +==43752== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractContractionCellFactory_valgrind.txt +==43752== +==43752== +==43752== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43752== +==43752== +==43752== +==43752== HEAP SUMMARY: +==43752== in use at exit: 618,814 bytes in 8,248 blocks +==43752== total heap usage: 169,217 allocs, 160,969 frees, 1,363,021,354 bytes allocated +==43752== +==43752== LEAK SUMMARY: +==43752== definitely lost: 0 bytes in 0 blocks +==43752== indirectly lost: 0 bytes in 0 blocks +==43752== possibly lost: 0 bytes in 0 blocks +==43752== still reachable: 24 bytes in 2 blocks +==43752== suppressed: 618,790 bytes in 8,246 blocks +==43752== Reachable blocks (those to which a pointer was found) are not shown. +==43752== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43752== +==43752== For lists of detected and suppressed errors, rerun with: -s +==43752== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestAbstractCvodeSystem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAbstractCvodeSystem_valgrind.txt new file mode 100644 index 000000000..40768c1c4 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAbstractCvodeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24891== Memcheck, a memory error detector +==24891== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24891== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24891== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractCvodeSystem -malloc_debug -malloc_dump -memory_info +==24891== Parent PID: 24036 +==24891== +==24891== +==24891== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24891== Open file descriptor 12: +==24891== at 0x643E07D: pipe (pipe.c:29) +==24891== by 0xB1CA07D: ??? +==24891== by 0x8CC44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24891== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24891== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24891== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24891== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24891== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24891== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24891== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24891== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24891== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24891== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24891== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) +==24891== +==24891== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24891== at 0x6442A1C: __open_nocancel (open64_nocancel.c:39) +==24891== by 0x63C6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24891== by 0x4B77822: ??? +==24891== by 0x4B7796F: ??? +==24891== by 0x8D696DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24891== by 0x8D69938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24891== by 0x8D1F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24891== by 0x8CC42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24891== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24891== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24891== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24891== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24891== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24891== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24891== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24891== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24891== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24891== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24891== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) +==24891== +==24891== Open file descriptor 113: +==24891== +==24891== +==24891== Open file descriptor 110: +==24891== +==24891== +==24891== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractCvodeSystem_valgrind.txt +==24891== +==24891== +==24891== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24891== +==24891== +==24891== +==24891== HEAP SUMMARY: +==24891== in use at exit: 617,886 bytes in 8,238 blocks +==24891== total heap usage: 46,487 allocs, 38,249 frees, 1,338,366,537 bytes allocated +==24891== +==24891== LEAK SUMMARY: +==24891== definitely lost: 0 bytes in 0 blocks +==24891== indirectly lost: 0 bytes in 0 blocks +==24891== possibly lost: 0 bytes in 0 blocks +==24891== still reachable: 24 bytes in 2 blocks +==24891== suppressed: 617,862 bytes in 8,236 blocks +==24891== Reachable blocks (those to which a pointer was found) are not shown. +==24891== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24891== +==24891== For lists of detected and suppressed errors, rerun with: -s +==24891== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestAbstractFeCableIntegralAssembler_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAbstractFeCableIntegralAssembler_valgrind.txt new file mode 100644 index 000000000..620af4377 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAbstractFeCableIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25173== Memcheck, a memory error detector +==25173== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25173== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25173== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeCableIntegralAssembler -malloc_debug -malloc_dump -memory_info +==25173== Parent PID: 24036 +==25173== +==25173== +==25173== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25173== Open file descriptor 12: +==25173== at 0x84E707D: pipe (pipe.c:29) +==25173== by 0x104D507D: ??? +==25173== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25173== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25173== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25173== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25173== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25173== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25173== by 0x136062: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25173== by 0x130C2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25173== by 0x133CD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25173== by 0x133B72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25173== by 0x134209: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25173== by 0x12F055: main (TestAbstractFeCableIntegralAssembler.cpp:19) +==25173== +==25173== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25173== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25173== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25173== by 0x7D3C822: ??? +==25173== by 0x7D3C96F: ??? +==25173== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25173== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25173== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25173== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25173== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25173== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25173== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25173== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25173== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25173== by 0x136062: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25173== by 0x130C2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25173== by 0x133CD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25173== by 0x133B72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25173== by 0x134209: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25173== by 0x12F055: main (TestAbstractFeCableIntegralAssembler.cpp:19) +==25173== +==25173== Open file descriptor 113: +==25173== +==25173== +==25173== Open file descriptor 110: +==25173== +==25173== +==25173== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeCableIntegralAssembler_valgrind.txt +==25173== +==25173== +==25173== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25173== +==25173== +==25173== +==25173== HEAP SUMMARY: +==25173== in use at exit: 618,254 bytes in 8,238 blocks +==25173== total heap usage: 59,953 allocs, 51,715 frees, 1,339,371,788 bytes allocated +==25173== +==25173== LEAK SUMMARY: +==25173== definitely lost: 0 bytes in 0 blocks +==25173== indirectly lost: 0 bytes in 0 blocks +==25173== possibly lost: 0 bytes in 0 blocks +==25173== still reachable: 24 bytes in 2 blocks +==25173== suppressed: 618,230 bytes in 8,236 blocks +==25173== Reachable blocks (those to which a pointer was found) are not shown. +==25173== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25173== +==25173== For lists of detected and suppressed errors, rerun with: -s +==25173== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt new file mode 100644 index 000000000..a7b0aedfd --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25190== Memcheck, a memory error detector +==25190== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25190== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25190== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeSurfaceIntegralAssembler -malloc_debug -malloc_dump -memory_info +==25190== Parent PID: 24036 +==25190== +==25190== +==25190== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25190== Open file descriptor 12: +==25190== at 0x84E707D: pipe (pipe.c:29) +==25190== by 0x104D507D: ??? +==25190== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25190== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25190== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25190== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25190== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25190== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25190== by 0x12D738: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25190== by 0x128933: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25190== by 0x12B4AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25190== by 0x12B3A5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25190== by 0x12B9B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25190== by 0x127135: main (TestAbstractFeSurfaceIntegralAssembler.cpp:18) +==25190== +==25190== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25190== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25190== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25190== by 0x7D3C822: ??? +==25190== by 0x7D3C96F: ??? +==25190== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25190== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25190== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25190== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25190== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25190== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25190== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25190== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25190== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25190== by 0x12D738: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25190== by 0x128933: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25190== by 0x12B4AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25190== by 0x12B3A5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25190== by 0x12B9B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25190== by 0x127135: main (TestAbstractFeSurfaceIntegralAssembler.cpp:18) +==25190== +==25190== Open file descriptor 113: +==25190== +==25190== +==25190== Open file descriptor 110: +==25190== +==25190== +==25190== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt +==25190== +==25190== +==25190== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25190== +==25190== +==25190== +==25190== HEAP SUMMARY: +==25190== in use at exit: 618,254 bytes in 8,238 blocks +==25190== total heap usage: 47,968 allocs, 39,730 frees, 1,338,473,174 bytes allocated +==25190== +==25190== LEAK SUMMARY: +==25190== definitely lost: 0 bytes in 0 blocks +==25190== indirectly lost: 0 bytes in 0 blocks +==25190== possibly lost: 0 bytes in 0 blocks +==25190== still reachable: 24 bytes in 2 blocks +==25190== suppressed: 618,230 bytes in 8,236 blocks +==25190== Reachable blocks (those to which a pointer was found) are not shown. +==25190== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25190== +==25190== For lists of detected and suppressed errors, rerun with: -s +==25190== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestAbstractFeVolumeIntegralAssembler_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAbstractFeVolumeIntegralAssembler_valgrind.txt new file mode 100644 index 000000000..5e5e0b22a --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAbstractFeVolumeIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25191== Memcheck, a memory error detector +==25191== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25191== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25191== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeVolumeIntegralAssembler -malloc_debug -malloc_dump -memory_info +==25191== Parent PID: 24036 +==25191== +==25191== +==25191== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25191== Open file descriptor 12: +==25191== at 0x84E707D: pipe (pipe.c:29) +==25191== by 0x104D507D: ??? +==25191== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25191== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25191== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25191== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25191== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25191== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25191== by 0x15E73C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25191== by 0x15920D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25191== by 0x15C3AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25191== by 0x15C24C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25191== by 0x15C8E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25191== by 0x157635: main (TestAbstractFeVolumeIntegralAssembler.cpp:19) +==25191== +==25191== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25191== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25191== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25191== by 0x7D3C822: ??? +==25191== by 0x7D3C96F: ??? +==25191== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25191== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25191== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25191== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25191== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25191== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25191== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25191== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25191== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25191== by 0x15E73C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25191== by 0x15920D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25191== by 0x15C3AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25191== by 0x15C24C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25191== by 0x15C8E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25191== by 0x157635: main (TestAbstractFeVolumeIntegralAssembler.cpp:19) +==25191== +==25191== Open file descriptor 113: +==25191== +==25191== +==25191== Open file descriptor 110: +==25191== +==25191== +==25191== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeVolumeIntegralAssembler_valgrind.txt +==25191== +==25191== +==25191== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25191== +==25191== +==25191== +==25191== HEAP SUMMARY: +==25191== in use at exit: 618,254 bytes in 8,238 blocks +==25191== total heap usage: 57,061 allocs, 48,823 frees, 1,339,698,174 bytes allocated +==25191== +==25191== LEAK SUMMARY: +==25191== definitely lost: 0 bytes in 0 blocks +==25191== indirectly lost: 0 bytes in 0 blocks +==25191== possibly lost: 0 bytes in 0 blocks +==25191== still reachable: 24 bytes in 2 blocks +==25191== suppressed: 618,230 bytes in 8,236 blocks +==25191== Reachable blocks (those to which a pointer was found) are not shown. +==25191== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25191== +==25191== For lists of detected and suppressed errors, rerun with: -s +==25191== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestAbstractFunctionalCalculator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAbstractFunctionalCalculator_valgrind.txt new file mode 100644 index 000000000..6e2b6b17d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAbstractFunctionalCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==25204== Memcheck, a memory error detector +==25204== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25204== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25204== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFunctionalCalculator -malloc_debug -malloc_dump -memory_info +==25204== Parent PID: 24036 +==25204== +==25204== +==25204== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25204== Open file descriptor 12: +==25204== at 0x858F07D: pipe (pipe.c:29) +==25204== by 0x104D607D: ??? +==25204== by 0xBE164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25204== by 0x7DB0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25204== by 0x7D49D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25204== by 0x6A1DD38: PetscInitialize (pinit.c:924) +==25204== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25204== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25204== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25204== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25204== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25204== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25204== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25204== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) +==25204== +==25204== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25204== at 0x8593A1C: __open_nocancel (open64_nocancel.c:39) +==25204== by 0x8517BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25204== by 0x7CAD822: ??? +==25204== by 0x7CAD96F: ??? +==25204== by 0xBEBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25204== by 0xBEBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25204== by 0xBE71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25204== by 0xBE162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25204== by 0x7DB0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25204== by 0x7D49D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25204== by 0x6A1DD38: PetscInitialize (pinit.c:924) +==25204== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25204== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25204== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25204== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25204== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25204== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25204== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25204== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) +==25204== +==25204== Open file descriptor 113: +==25204== +==25204== +==25204== Open file descriptor 110: +==25204== +==25204== +==25204== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFunctionalCalculator_valgrind.txt +==25204== +==25204== +==25204== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25204== +==25204== +==25204== +==25204== HEAP SUMMARY: +==25204== in use at exit: 618,254 bytes in 8,238 blocks +==25204== total heap usage: 89,962 allocs, 81,724 frees, 1,340,571,104 bytes allocated +==25204== +==25204== LEAK SUMMARY: +==25204== definitely lost: 0 bytes in 0 blocks +==25204== indirectly lost: 0 bytes in 0 blocks +==25204== possibly lost: 0 bytes in 0 blocks +==25204== still reachable: 24 bytes in 2 blocks +==25204== suppressed: 618,230 bytes in 8,236 blocks +==25204== Reachable blocks (those to which a pointer was found) are not shown. +==25204== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25204== +==25204== For lists of detected and suppressed errors, rerun with: -s +==25204== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestAbstractIvpOdeSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAbstractIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..09fe1a90a --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAbstractIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24878== Memcheck, a memory error detector +==24878== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24878== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24878== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24878== Parent PID: 24036 +==24878== +==24878== +==24878== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24878== Open file descriptor 12: +==24878== at 0x503907D: pipe (pipe.c:29) +==24878== by 0xB1E607D: ??? +==24878== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24878== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24878== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24878== by 0x5308D38: PetscInitialize (pinit.c:924) +==24878== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24878== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24878== by 0x13ABB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24878== by 0x13250D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24878== by 0x13549A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24878== by 0x13533A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24878== by 0x1359D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24878== by 0x12FAD5: main (TestAbstractIvpOdeSolver.cpp:19) +==24878== +==24878== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24878== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24878== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24878== by 0x4B77822: ??? +==24878== by 0x4B7796F: ??? +==24878== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24878== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24878== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24878== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24878== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24878== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24878== by 0x5308D38: PetscInitialize (pinit.c:924) +==24878== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24878== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24878== by 0x13ABB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24878== by 0x13250D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24878== by 0x13549A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24878== by 0x13533A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24878== by 0x1359D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24878== by 0x12FAD5: main (TestAbstractIvpOdeSolver.cpp:19) +==24878== +==24878== Open file descriptor 113: +==24878== +==24878== +==24878== Open file descriptor 110: +==24878== +==24878== +==24878== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractIvpOdeSolver_valgrind.txt +==24878== +==24878== +==24878== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24878== +==24878== +==24878== +==24878== HEAP SUMMARY: +==24878== in use at exit: 617,902 bytes in 8,238 blocks +==24878== total heap usage: 138,422 allocs, 130,184 frees, 1,346,068,997 bytes allocated +==24878== +==24878== LEAK SUMMARY: +==24878== definitely lost: 0 bytes in 0 blocks +==24878== indirectly lost: 0 bytes in 0 blocks +==24878== possibly lost: 0 bytes in 0 blocks +==24878== still reachable: 24 bytes in 2 blocks +==24878== suppressed: 617,878 bytes in 8,236 blocks +==24878== Reachable blocks (those to which a pointer was found) are not shown. +==24878== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24878== +==24878== For lists of detected and suppressed errors, rerun with: -s +==24878== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestAbstractOdeSystem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAbstractOdeSystem_valgrind.txt new file mode 100644 index 000000000..078c3251b --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAbstractOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24892== Memcheck, a memory error detector +==24892== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24892== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24892== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractOdeSystem -malloc_debug -malloc_dump -memory_info +==24892== Parent PID: 24036 +==24892== +==24892== +==24892== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24892== Open file descriptor 12: +==24892== at 0x640707D: pipe (pipe.c:29) +==24892== by 0xB1E407D: ??? +==24892== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24892== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24892== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24892== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24892== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24892== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24892== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24892== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24892== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24892== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24892== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24892== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) +==24892== +==24892== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24892== at 0x640BA1C: __open_nocancel (open64_nocancel.c:39) +==24892== by 0x638FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24892== by 0x4B77822: ??? +==24892== by 0x4B7796F: ??? +==24892== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24892== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24892== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24892== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24892== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24892== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24892== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24892== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24892== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24892== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24892== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24892== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24892== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24892== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24892== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) +==24892== +==24892== Open file descriptor 113: +==24892== +==24892== +==24892== Open file descriptor 110: +==24892== +==24892== +==24892== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractOdeSystem_valgrind.txt +==24892== +==24892== +==24892== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24892== +==24892== +==24892== +==24892== HEAP SUMMARY: +==24892== in use at exit: 617,902 bytes in 8,238 blocks +==24892== total heap usage: 45,968 allocs, 37,730 frees, 1,338,333,687 bytes allocated +==24892== +==24892== LEAK SUMMARY: +==24892== definitely lost: 0 bytes in 0 blocks +==24892== indirectly lost: 0 bytes in 0 blocks +==24892== possibly lost: 0 bytes in 0 blocks +==24892== still reachable: 24 bytes in 2 blocks +==24892== suppressed: 617,878 bytes in 8,236 blocks +==24892== Reachable blocks (those to which a pointer was found) are not shown. +==24892== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24892== +==24892== For lists of detected and suppressed errors, rerun with: -s +==24892== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestAbstractPurkinjeCellFactory_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAbstractPurkinjeCellFactory_valgrind.txt new file mode 100644 index 000000000..68b3de179 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAbstractPurkinjeCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==43759== Memcheck, a memory error detector +==43759== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43759== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43759== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestAbstractPurkinjeCellFactory -malloc_debug -malloc_dump -memory_info +==43759== Parent PID: 24036 +==43759== +==43759== +==43759== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43759== Open file descriptor 12: +==43759== at 0xA50C07D: pipe (pipe.c:29) +==43759== by 0x1432407D: ??? +==43759== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43759== by 0xBC07418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43759== by 0xBBA0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43759== by 0xA897D38: PetscInitialize (pinit.c:924) +==43759== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43759== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43759== by 0x11B060: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43759== by 0x11664D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43759== by 0x118D6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43759== by 0x118C0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43759== by 0x1192A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43759== by 0x114A75: main (TestAbstractPurkinjeCellFactory.cpp:19) +==43759== +==43759== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43759== at 0xA510A1C: __open_nocancel (open64_nocancel.c:39) +==43759== by 0xA494BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43759== by 0x9E30822: ??? +==43759== by 0x9E3096F: ??? +==43759== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43759== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43759== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43759== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43759== by 0xBC07418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43759== by 0xBBA0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43759== by 0xA897D38: PetscInitialize (pinit.c:924) +==43759== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43759== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43759== by 0x11B060: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43759== by 0x11664D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43759== by 0x118D6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43759== by 0x118C0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43759== by 0x1192A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43759== by 0x114A75: main (TestAbstractPurkinjeCellFactory.cpp:19) +==43759== +==43759== Open file descriptor 113: +==43759== +==43759== +==43759== Open file descriptor 110: +==43759== +==43759== +==43759== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractPurkinjeCellFactory_valgrind.txt +==43759== +==43759== +==43759== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43759== +==43759== +==43759== +==43759== HEAP SUMMARY: +==43759== in use at exit: 618,334 bytes in 8,238 blocks +==43759== total heap usage: 60,034 allocs, 51,796 frees, 1,339,347,966 bytes allocated +==43759== +==43759== LEAK SUMMARY: +==43759== definitely lost: 0 bytes in 0 blocks +==43759== indirectly lost: 0 bytes in 0 blocks +==43759== possibly lost: 0 bytes in 0 blocks +==43759== still reachable: 24 bytes in 2 blocks +==43759== suppressed: 618,310 bytes in 8,236 blocks +==43759== Reachable blocks (those to which a pointer was found) are not shown. +==43759== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43759== +==43759== For lists of detected and suppressed errors, rerun with: -s +==43759== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestAcinarUnitModels_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAcinarUnitModels_valgrind.txt new file mode 100644 index 000000000..6379e2783 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAcinarUnitModels_valgrind.txt @@ -0,0 +1,36 @@ +==41283== Memcheck, a memory error detector +==41283== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41283== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41283== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAcinarUnitModels -malloc_debug -malloc_dump -memory_info +==41283== Parent PID: 24036 +==41283== +==41283== +==41283== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41283== Open file descriptor 113: +==41283== +==41283== +==41283== Open file descriptor 110: +==41283== +==41283== +==41283== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAcinarUnitModels_valgrind.txt +==41283== +==41283== +==41283== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41283== +==41283== +==41283== +==41283== HEAP SUMMARY: +==41283== in use at exit: 24 bytes in 2 blocks +==41283== total heap usage: 56,753 allocs, 56,751 frees, 1,351,562 bytes allocated +==41283== +==41283== LEAK SUMMARY: +==41283== definitely lost: 0 bytes in 0 blocks +==41283== indirectly lost: 0 bytes in 0 blocks +==41283== possibly lost: 0 bytes in 0 blocks +==41283== still reachable: 24 bytes in 2 blocks +==41283== suppressed: 0 bytes in 0 blocks +==41283== Reachable blocks (those to which a pointer was found) are not shown. +==41283== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41283== +==41283== For lists of detected and suppressed errors, rerun with: -s +==41283== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-20_21-41-09/TestAirwayBranch_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAirwayBranch_valgrind.txt new file mode 100644 index 000000000..6354971b7 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAirwayBranch_valgrind.txt @@ -0,0 +1,36 @@ +==41187== Memcheck, a memory error detector +==41187== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41187== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41187== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayBranch -malloc_debug -malloc_dump -memory_info +==41187== Parent PID: 24036 +==41187== +==41187== +==41187== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41187== Open file descriptor 113: +==41187== +==41187== +==41187== Open file descriptor 110: +==41187== +==41187== +==41187== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayBranch_valgrind.txt +==41187== +==41187== +==41187== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41187== +==41187== +==41187== +==41187== HEAP SUMMARY: +==41187== in use at exit: 24 bytes in 2 blocks +==41187== total heap usage: 7,276 allocs, 7,274 frees, 1,027,073 bytes allocated +==41187== +==41187== LEAK SUMMARY: +==41187== definitely lost: 0 bytes in 0 blocks +==41187== indirectly lost: 0 bytes in 0 blocks +==41187== possibly lost: 0 bytes in 0 blocks +==41187== still reachable: 24 bytes in 2 blocks +==41187== suppressed: 0 bytes in 0 blocks +==41187== Reachable blocks (those to which a pointer was found) are not shown. +==41187== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41187== +==41187== For lists of detected and suppressed errors, rerun with: -s +==41187== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-20_21-41-09/TestAirwayGeneration_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAirwayGeneration_valgrind.txt new file mode 100644 index 000000000..623d9a87a --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAirwayGeneration_valgrind.txt @@ -0,0 +1,36 @@ +==41240== Memcheck, a memory error detector +==41240== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41240== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41240== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayGeneration -malloc_debug -malloc_dump -memory_info +==41240== Parent PID: 24036 +==41240== +==41240== +==41240== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41240== Open file descriptor 113: +==41240== +==41240== +==41240== Open file descriptor 110: +==41240== +==41240== +==41240== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayGeneration_valgrind.txt +==41240== +==41240== +==41240== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41240== +==41240== +==41240== +==41240== HEAP SUMMARY: +==41240== in use at exit: 24 bytes in 2 blocks +==41240== total heap usage: 7,378 allocs, 7,376 frees, 939,180 bytes allocated +==41240== +==41240== LEAK SUMMARY: +==41240== definitely lost: 0 bytes in 0 blocks +==41240== indirectly lost: 0 bytes in 0 blocks +==41240== possibly lost: 0 bytes in 0 blocks +==41240== still reachable: 24 bytes in 2 blocks +==41240== suppressed: 0 bytes in 0 blocks +==41240== Reachable blocks (those to which a pointer was found) are not shown. +==41240== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41240== +==41240== For lists of detected and suppressed errors, rerun with: -s +==41240== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-20_21-41-09/TestAirwayGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAirwayGenerator_valgrind.txt new file mode 100644 index 000000000..2d3dc5d44 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAirwayGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==41243== Memcheck, a memory error detector +==41243== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41243== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41243== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayGenerator -malloc_debug -malloc_dump -memory_info +==41243== Parent PID: 24036 +==41243== +==41243== +==41243== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41243== Open file descriptor 12: +==41243== at 0x6BD107D: pipe (pipe.c:29) +==41243== by 0x107A407D: ??? +==41243== by 0xBAC94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41243== by 0x5ED6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41243== by 0x5E6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41243== by 0x4B43D38: PetscInitialize (pinit.c:924) +==41243== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41243== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41243== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41243== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41243== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41243== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41243== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41243== by 0x111D35: main (TestAirwayGenerator.cpp:19) +==41243== +==41243== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41243== at 0x6BD5A1C: __open_nocancel (open64_nocancel.c:39) +==41243== by 0x6B59BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41243== by 0x5DD3822: ??? +==41243== by 0x5DD396F: ??? +==41243== by 0xBB6E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41243== by 0xBB6E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41243== by 0xBB24922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41243== by 0xBAC92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41243== by 0x5ED6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41243== by 0x5E6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41243== by 0x4B43D38: PetscInitialize (pinit.c:924) +==41243== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41243== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41243== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41243== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41243== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41243== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41243== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41243== by 0x111D35: main (TestAirwayGenerator.cpp:19) +==41243== +==41243== Open file descriptor 113: +==41243== +==41243== +==41243== Open file descriptor 110: +==41243== +==41243== +==41243== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayGenerator_valgrind.txt +==41243== +==41243== +==41243== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41243== +==41243== +==41243== +==41243== HEAP SUMMARY: +==41243== in use at exit: 618,318 bytes in 8,238 blocks +==41243== total heap usage: 627,253 allocs, 619,015 frees, 1,787,062,398 bytes allocated +==41243== +==41243== LEAK SUMMARY: +==41243== definitely lost: 0 bytes in 0 blocks +==41243== indirectly lost: 0 bytes in 0 blocks +==41243== possibly lost: 0 bytes in 0 blocks +==41243== still reachable: 24 bytes in 2 blocks +==41243== suppressed: 618,294 bytes in 8,236 blocks +==41243== Reachable blocks (those to which a pointer was found) are not shown. +==41243== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41243== +==41243== For lists of detected and suppressed errors, rerun with: -s +==41243== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestAirwayPropertiesCalculator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAirwayPropertiesCalculator_valgrind.txt new file mode 100644 index 000000000..aa527b1f2 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAirwayPropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==41189== Memcheck, a memory error detector +==41189== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41189== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41189== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayPropertiesCalculator -malloc_debug -malloc_dump -memory_info +==41189== Parent PID: 24036 +==41189== +==41189== +==41189== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41189== Open file descriptor 113: +==41189== +==41189== +==41189== Open file descriptor 110: +==41189== +==41189== +==41189== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayPropertiesCalculator_valgrind.txt +==41189== +==41189== +==41189== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41189== +==41189== +==41189== +==41189== HEAP SUMMARY: +==41189== in use at exit: 24 bytes in 2 blocks +==41189== total heap usage: 6,941,070 allocs, 6,941,068 frees, 279,826,148 bytes allocated +==41189== +==41189== LEAK SUMMARY: +==41189== definitely lost: 0 bytes in 0 blocks +==41189== indirectly lost: 0 bytes in 0 blocks +==41189== possibly lost: 0 bytes in 0 blocks +==41189== still reachable: 24 bytes in 2 blocks +==41189== suppressed: 0 bytes in 0 blocks +==41189== Reachable blocks (those to which a pointer was found) are not shown. +==41189== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41189== +==41189== For lists of detected and suppressed errors, rerun with: -s +==41189== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-20_21-41-09/TestAirwayRemesher_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAirwayRemesher_valgrind.txt new file mode 100644 index 000000000..235393a4a --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAirwayRemesher_valgrind.txt @@ -0,0 +1,73 @@ +==41252== Memcheck, a memory error detector +==41252== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41252== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41252== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayRemesher -malloc_debug -malloc_dump -memory_info +==41252== Parent PID: 24036 +==41252== +==41252== +==41252== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41252== Open file descriptor 12: +==41252== at 0x822907D: pipe (pipe.c:29) +==41252== by 0x107A407D: ??? +==41252== by 0xBFCD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41252== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41252== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41252== by 0x679ED38: PetscInitialize (pinit.c:924) +==41252== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41252== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41252== by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41252== by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41252== by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41252== by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41252== by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41252== by 0x114955: main (TestAirwayRemesher.cpp:18) +==41252== +==41252== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41252== at 0x822DA1C: __open_nocancel (open64_nocancel.c:39) +==41252== by 0x81B1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41252== by 0x7A2E822: ??? +==41252== by 0x7A2E96F: ??? +==41252== by 0xC0726DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41252== by 0xC072938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41252== by 0xC028922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41252== by 0xBFCD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41252== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41252== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41252== by 0x679ED38: PetscInitialize (pinit.c:924) +==41252== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41252== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41252== by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41252== by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41252== by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41252== by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41252== by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41252== by 0x114955: main (TestAirwayRemesher.cpp:18) +==41252== +==41252== Open file descriptor 113: +==41252== +==41252== +==41252== Open file descriptor 110: +==41252== +==41252== +==41252== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayRemesher_valgrind.txt +==41252== +==41252== +==41252== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41252== +==41252== +==41252== +==41252== HEAP SUMMARY: +==41252== in use at exit: 618,247 bytes in 8,234 blocks +==41252== total heap usage: 11,597,064 allocs, 11,588,830 frees, 1,797,523,660 bytes allocated +==41252== +==41252== LEAK SUMMARY: +==41252== definitely lost: 0 bytes in 0 blocks +==41252== indirectly lost: 0 bytes in 0 blocks +==41252== possibly lost: 0 bytes in 0 blocks +==41252== still reachable: 24 bytes in 2 blocks +==41252== suppressed: 618,223 bytes in 8,232 blocks +==41252== Reachable blocks (those to which a pointer was found) are not shown. +==41252== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41252== +==41252== For lists of detected and suppressed errors, rerun with: -s +==41252== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-20_21-41-09/TestAirwayTreeWalker_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAirwayTreeWalker_valgrind.txt new file mode 100644 index 000000000..35bac4569 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAirwayTreeWalker_valgrind.txt @@ -0,0 +1,36 @@ +==41190== Memcheck, a memory error detector +==41190== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41190== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41190== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayTreeWalker -malloc_debug -malloc_dump -memory_info +==41190== Parent PID: 24036 +==41190== +==41190== +==41190== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41190== Open file descriptor 113: +==41190== +==41190== +==41190== Open file descriptor 110: +==41190== +==41190== +==41190== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayTreeWalker_valgrind.txt +==41190== +==41190== +==41190== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41190== +==41190== +==41190== +==41190== HEAP SUMMARY: +==41190== in use at exit: 24 bytes in 2 blocks +==41190== total heap usage: 7,161 allocs, 7,159 frees, 1,017,852 bytes allocated +==41190== +==41190== LEAK SUMMARY: +==41190== definitely lost: 0 bytes in 0 blocks +==41190== indirectly lost: 0 bytes in 0 blocks +==41190== possibly lost: 0 bytes in 0 blocks +==41190== still reachable: 24 bytes in 2 blocks +==41190== suppressed: 0 bytes in 0 blocks +==41190== Reachable blocks (those to which a pointer was found) are not shown. +==41190== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41190== +==41190== For lists of detected and suppressed errors, rerun with: -s +==41190== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-20_21-41-09/TestAirwayWallModels_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAirwayWallModels_valgrind.txt new file mode 100644 index 000000000..7c6404282 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAirwayWallModels_valgrind.txt @@ -0,0 +1,36 @@ +==41285== Memcheck, a memory error detector +==41285== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41285== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41285== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayWallModels -malloc_debug -malloc_dump -memory_info +==41285== Parent PID: 24036 +==41285== +==41285== +==41285== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41285== Open file descriptor 113: +==41285== +==41285== +==41285== Open file descriptor 110: +==41285== +==41285== +==41285== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayWallModels_valgrind.txt +==41285== +==41285== +==41285== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41285== +==41285== +==41285== +==41285== HEAP SUMMARY: +==41285== in use at exit: 24 bytes in 2 blocks +==41285== total heap usage: 7,221 allocs, 7,219 frees, 1,020,269 bytes allocated +==41285== +==41285== LEAK SUMMARY: +==41285== definitely lost: 0 bytes in 0 blocks +==41285== indirectly lost: 0 bytes in 0 blocks +==41285== possibly lost: 0 bytes in 0 blocks +==41285== still reachable: 24 bytes in 2 blocks +==41285== suppressed: 0 bytes in 0 blocks +==41285== Reachable blocks (those to which a pointer was found) are not shown. +==41285== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41285== +==41285== For lists of detected and suppressed errors, rerun with: -s +==41285== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-20_21-41-09/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt new file mode 100644 index 000000000..2ab0b4c53 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25828== Memcheck, a memory error detector +==25828== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25828== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25828== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==25828== Parent PID: 24036 +==25828== +==25828== +==25828== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25828== Open file descriptor 12: +==25828== at 0xEF9407D: pipe (pipe.c:29) +==25828== by 0x196AC07D: ??? +==25828== by 0x13C514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25828== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25828== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25828== by 0xD871D38: PetscInitialize (pinit.c:924) +==25828== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25828== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25828== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25828== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25828== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25828== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25828== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25828== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) +==25828== +==25828== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25828== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25828== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25828== by 0xD71E822: ??? +==25828== by 0xD71E96F: ??? +==25828== by 0x13CF66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25828== by 0x13CF6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25828== by 0x13CAC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25828== by 0x13C512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25828== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25828== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25828== by 0xD871D38: PetscInitialize (pinit.c:924) +==25828== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25828== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25828== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25828== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25828== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25828== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25828== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25828== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) +==25828== +==25828== Open file descriptor 113: +==25828== +==25828== +==25828== Open file descriptor 110: +==25828== +==25828== +==25828== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt +==25828== +==25828== +==25828== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25828== +==25828== +==25828== +==25828== HEAP SUMMARY: +==25828== in use at exit: 618,318 bytes in 8,238 blocks +==25828== total heap usage: 166,109 allocs, 157,871 frees, 1,349,639,943 bytes allocated +==25828== +==25828== LEAK SUMMARY: +==25828== definitely lost: 0 bytes in 0 blocks +==25828== indirectly lost: 0 bytes in 0 blocks +==25828== possibly lost: 0 bytes in 0 blocks +==25828== still reachable: 24 bytes in 2 blocks +==25828== suppressed: 618,294 bytes in 8,236 blocks +==25828== Reachable blocks (those to which a pointer was found) are not shown. +==25828== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25828== +==25828== For lists of detected and suppressed errors, rerun with: -s +==25828== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestArchiveCell_valgrind.txt b/log-files/2024-09-20_21-41-09/TestArchiveCell_valgrind.txt new file mode 100644 index 000000000..6218d7800 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestArchiveCell_valgrind.txt @@ -0,0 +1,73 @@ +==25370== Memcheck, a memory error detector +==25370== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25370== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25370== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestArchiveCell -malloc_debug -malloc_dump -memory_info +==25370== Parent PID: 24036 +==25370== +==25370== +==25370== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25370== Open file descriptor 12: +==25370== at 0xED5007D: pipe (pipe.c:29) +==25370== by 0x196AC07D: ??? +==25370== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25370== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25370== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25370== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25370== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25370== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25370== by 0x1A4DB1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25370== by 0x19F1FF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25370== by 0x1A2140: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25370== by 0x1A203C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25370== by 0x1A264F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25370== by 0x19D9F5: main (TestArchiveCell.cpp:18) +==25370== +==25370== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25370== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25370== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25370== by 0xD4DA822: ??? +==25370== by 0xD4DA96F: ??? +==25370== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25370== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25370== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25370== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25370== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25370== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25370== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25370== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25370== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25370== by 0x1A4DB1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25370== by 0x19F1FF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25370== by 0x1A2140: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25370== by 0x1A203C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25370== by 0x1A264F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25370== by 0x19D9F5: main (TestArchiveCell.cpp:18) +==25370== +==25370== Open file descriptor 113: +==25370== +==25370== +==25370== Open file descriptor 110: +==25370== +==25370== +==25370== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiveCell_valgrind.txt +==25370== +==25370== +==25370== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25370== +==25370== +==25370== +==25370== HEAP SUMMARY: +==25370== in use at exit: 618,414 bytes in 8,240 blocks +==25370== total heap usage: 53,934 allocs, 45,694 frees, 1,339,008,841 bytes allocated +==25370== +==25370== LEAK SUMMARY: +==25370== definitely lost: 0 bytes in 0 blocks +==25370== indirectly lost: 0 bytes in 0 blocks +==25370== possibly lost: 0 bytes in 0 blocks +==25370== still reachable: 120 bytes in 4 blocks +==25370== suppressed: 618,294 bytes in 8,236 blocks +==25370== Reachable blocks (those to which a pointer was found) are not shown. +==25370== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25370== +==25370== For lists of detected and suppressed errors, rerun with: -s +==25370== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestArchiveFormat_valgrind.txt b/log-files/2024-09-20_21-41-09/TestArchiveFormat_valgrind.txt new file mode 100644 index 000000000..c2f6b51cd --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestArchiveFormat_valgrind.txt @@ -0,0 +1,73 @@ +==40617== Memcheck, a memory error detector +==40617== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40617== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40617== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestArchiveFormat -malloc_debug -malloc_dump -memory_info +==40617== Parent PID: 24036 +==40617== +==40617== +==40617== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40617== Open file descriptor 12: +==40617== at 0x125B207D: pipe (pipe.c:29) +==40617== by 0x1B36D07D: ??? +==40617== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40617== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40617== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40617== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40617== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40617== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40617== by 0x1C0D5D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40617== by 0x1BBA9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40617== by 0x1BE6BA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40617== by 0x1BE5B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40617== by 0x1BEBC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40617== by 0x1BA295: main (TestArchiveFormat.cpp:18) +==40617== +==40617== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40617== at 0x125B6A1C: __open_nocancel (open64_nocancel.c:39) +==40617== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40617== by 0x109F7822: ??? +==40617== by 0x109F796F: ??? +==40617== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40617== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40617== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40617== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40617== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40617== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40617== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40617== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40617== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40617== by 0x1C0D5D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40617== by 0x1BBA9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40617== by 0x1BE6BA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40617== by 0x1BE5B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40617== by 0x1BEBC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40617== by 0x1BA295: main (TestArchiveFormat.cpp:18) +==40617== +==40617== Open file descriptor 113: +==40617== +==40617== +==40617== Open file descriptor 110: +==40617== +==40617== +==40617== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiveFormat_valgrind.txt +==40617== +==40617== +==40617== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40617== +==40617== +==40617== +==40617== HEAP SUMMARY: +==40617== in use at exit: 618,414 bytes in 8,239 blocks +==40617== total heap usage: 137,686 allocs, 129,447 frees, 1,345,407,353 bytes allocated +==40617== +==40617== LEAK SUMMARY: +==40617== definitely lost: 0 bytes in 0 blocks +==40617== indirectly lost: 0 bytes in 0 blocks +==40617== possibly lost: 0 bytes in 0 blocks +==40617== still reachable: 104 bytes in 3 blocks +==40617== suppressed: 618,310 bytes in 8,236 blocks +==40617== Reachable blocks (those to which a pointer was found) are not shown. +==40617== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40617== +==40617== For lists of detected and suppressed errors, rerun with: -s +==40617== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestArchivingExtendedBidomain_valgrind.txt b/log-files/2024-09-20_21-41-09/TestArchivingExtendedBidomain_valgrind.txt new file mode 100644 index 000000000..01f6ee88f --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestArchivingExtendedBidomain_valgrind.txt @@ -0,0 +1,73 @@ +==41387== Memcheck, a memory error detector +==41387== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41387== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41387== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestArchivingExtendedBidomain -malloc_debug -malloc_dump -memory_info +==41387== Parent PID: 24036 +==41387== +==41387== +==41387== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41387== Open file descriptor 12: +==41387== at 0xBD4907D: pipe (pipe.c:29) +==41387== by 0x1432407D: ??? +==41387== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41387== by 0xB639418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41387== by 0xB5D2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41387== by 0xA2C9D38: PetscInitialize (pinit.c:924) +==41387== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41387== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41387== by 0x12EE9E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41387== by 0x129BF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41387== by 0x12CABA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41387== by 0x12C9B5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41387== by 0x12CFC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41387== by 0x1283A5: main (TestArchivingExtendedBidomain.cpp:18) +==41387== +==41387== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41387== at 0xBD4DA1C: __open_nocancel (open64_nocancel.c:39) +==41387== by 0xBCD1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41387== by 0xA174822: ??? +==41387== by 0xA17496F: ??? +==41387== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41387== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41387== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41387== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41387== by 0xB639418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41387== by 0xB5D2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41387== by 0xA2C9D38: PetscInitialize (pinit.c:924) +==41387== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41387== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41387== by 0x12EE9E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41387== by 0x129BF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41387== by 0x12CABA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41387== by 0x12C9B5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41387== by 0x12CFC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41387== by 0x1283A5: main (TestArchivingExtendedBidomain.cpp:18) +==41387== +==41387== Open file descriptor 113: +==41387== +==41387== +==41387== Open file descriptor 110: +==41387== +==41387== +==41387== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchivingExtendedBidomain_valgrind.txt +==41387== +==41387== +==41387== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41387== +==41387== +==41387== +==41387== HEAP SUMMARY: +==41387== in use at exit: 618,743 bytes in 8,244 blocks +==41387== total heap usage: 352,177 allocs, 343,933 frees, 1,440,037,472 bytes allocated +==41387== +==41387== LEAK SUMMARY: +==41387== definitely lost: 0 bytes in 0 blocks +==41387== indirectly lost: 0 bytes in 0 blocks +==41387== possibly lost: 0 bytes in 0 blocks +==41387== still reachable: 24 bytes in 2 blocks +==41387== suppressed: 618,719 bytes in 8,242 blocks +==41387== Reachable blocks (those to which a pointer was found) are not shown. +==41387== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41387== +==41387== For lists of detected and suppressed errors, rerun with: -s +==41387== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 51 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestArchivingHelperClasses_valgrind.txt b/log-files/2024-09-20_21-41-09/TestArchivingHelperClasses_valgrind.txt new file mode 100644 index 000000000..a79f16810 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestArchivingHelperClasses_valgrind.txt @@ -0,0 +1,73 @@ +==24037== Memcheck, a memory error detector +==24037== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24037== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24037== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestArchivingHelperClasses -malloc_debug -malloc_dump -memory_info +==24037== Parent PID: 24036 +==24037== +==24037== +==24037== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24037== Open file descriptor 12: +==24037== at 0x4CF607D: pipe (pipe.c:29) +==24037== by 0xAEA507D: ??? +==24037== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24037== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24037== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24037== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24037== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24037== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24037== by 0x11F878: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24037== by 0x11ABDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24037== by 0x11D596: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24037== by 0x11D436: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24037== by 0x11DACD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24037== by 0x119005: main (TestArchivingHelperClasses.cpp:19) +==24037== +==24037== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24037== at 0x4CFAA1C: __open_nocancel (open64_nocancel.c:39) +==24037== by 0x4C7EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24037== by 0x4935822: ??? +==24037== by 0x493596F: ??? +==24037== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24037== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24037== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24037== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24037== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24037== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24037== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24037== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24037== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24037== by 0x11F878: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24037== by 0x11ABDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24037== by 0x11D596: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24037== by 0x11D436: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24037== by 0x11DACD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24037== by 0x119005: main (TestArchivingHelperClasses.cpp:19) +==24037== +==24037== Open file descriptor 113: +==24037== +==24037== +==24037== Open file descriptor 110: +==24037== +==24037== +==24037== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchivingHelperClasses_valgrind.txt +==24037== +==24037== +==24037== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24037== +==24037== +==24037== +==24037== HEAP SUMMARY: +==24037== in use at exit: 617,838 bytes in 8,238 blocks +==24037== total heap usage: 45,932 allocs, 37,694 frees, 1,338,445,132 bytes allocated +==24037== +==24037== LEAK SUMMARY: +==24037== definitely lost: 0 bytes in 0 blocks +==24037== indirectly lost: 0 bytes in 0 blocks +==24037== possibly lost: 0 bytes in 0 blocks +==24037== still reachable: 24 bytes in 2 blocks +==24037== suppressed: 617,814 bytes in 8,236 blocks +==24037== Reachable blocks (those to which a pointer was found) are not shown. +==24037== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24037== +==24037== For lists of detected and suppressed errors, rerun with: -s +==24037== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestArchiving_valgrind.txt b/log-files/2024-09-20_21-41-09/TestArchiving_valgrind.txt new file mode 100644 index 000000000..101dfbe2d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestArchiving_valgrind.txt @@ -0,0 +1,73 @@ +==24038== Memcheck, a memory error detector +==24038== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24038== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24038== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestArchiving -malloc_debug -malloc_dump -memory_info +==24038== Parent PID: 24036 +==24038== +==24038== +==24038== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24038== Open file descriptor 12: +==24038== at 0x61AB07D: pipe (pipe.c:29) +==24038== by 0xAEA507D: ??? +==24038== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24038== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24038== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24038== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24038== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24038== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24038== by 0x12FB25: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24038== by 0x128E5F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24038== by 0x12CB36: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24038== by 0x12CA31: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24038== by 0x12D045: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24038== by 0x127655: main (TestArchiving.cpp:18) +==24038== +==24038== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24038== at 0x61AFA1C: __open_nocancel (open64_nocancel.c:39) +==24038== by 0x6133BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24038== by 0x4935822: ??? +==24038== by 0x493596F: ??? +==24038== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24038== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24038== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24038== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24038== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24038== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24038== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24038== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24038== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24038== by 0x12FB25: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24038== by 0x128E5F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24038== by 0x12CB36: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24038== by 0x12CA31: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24038== by 0x12D045: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24038== by 0x127655: main (TestArchiving.cpp:18) +==24038== +==24038== Open file descriptor 113: +==24038== +==24038== +==24038== Open file descriptor 110: +==24038== +==24038== +==24038== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiving_valgrind.txt +==24038== +==24038== +==24038== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24038== +==24038== +==24038== +==24038== HEAP SUMMARY: +==24038== in use at exit: 617,838 bytes in 8,238 blocks +==24038== total heap usage: 45,506 allocs, 37,268 frees, 1,338,352,746 bytes allocated +==24038== +==24038== LEAK SUMMARY: +==24038== definitely lost: 0 bytes in 0 blocks +==24038== indirectly lost: 0 bytes in 0 blocks +==24038== possibly lost: 0 bytes in 0 blocks +==24038== still reachable: 24 bytes in 2 blocks +==24038== suppressed: 617,814 bytes in 8,236 blocks +==24038== Reachable blocks (those to which a pointer was found) are not shown. +==24038== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24038== +==24038== For lists of detected and suppressed errors, rerun with: -s +==24038== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestBackwardEulerIvpOdeSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestBackwardEulerIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..332a13f0d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestBackwardEulerIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24913== Memcheck, a memory error detector +==24913== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24913== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24913== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestBackwardEulerIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24913== Parent PID: 24036 +==24913== +==24913== +==24913== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24913== Open file descriptor 12: +==24913== at 0x503907D: pipe (pipe.c:29) +==24913== by 0xB1E607D: ??? +==24913== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24913== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24913== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24913== by 0x5308D38: PetscInitialize (pinit.c:924) +==24913== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24913== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24913== by 0x125F28: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24913== by 0x120619: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24913== by 0x122DCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24913== by 0x122CCA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24913== by 0x1232DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24913== by 0x11DEE5: main (TestBackwardEulerIvpOdeSolver.cpp:18) +==24913== +==24913== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24913== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24913== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24913== by 0x4B77822: ??? +==24913== by 0x4B7796F: ??? +==24913== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24913== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24913== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24913== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24913== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24913== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24913== by 0x5308D38: PetscInitialize (pinit.c:924) +==24913== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24913== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24913== by 0x125F28: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24913== by 0x120619: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24913== by 0x122DCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24913== by 0x122CCA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24913== by 0x1232DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24913== by 0x11DEE5: main (TestBackwardEulerIvpOdeSolver.cpp:18) +==24913== +==24913== Open file descriptor 113: +==24913== +==24913== +==24913== Open file descriptor 110: +==24913== +==24913== +==24913== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBackwardEulerIvpOdeSolver_valgrind.txt +==24913== +==24913== +==24913== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24913== +==24913== +==24913== +==24913== HEAP SUMMARY: +==24913== in use at exit: 617,902 bytes in 8,238 blocks +==24913== total heap usage: 386,055 allocs, 377,817 frees, 1,344,036,800 bytes allocated +==24913== +==24913== LEAK SUMMARY: +==24913== definitely lost: 0 bytes in 0 blocks +==24913== indirectly lost: 0 bytes in 0 blocks +==24913== possibly lost: 0 bytes in 0 blocks +==24913== still reachable: 24 bytes in 2 blocks +==24913== suppressed: 617,878 bytes in 8,236 blocks +==24913== Reachable blocks (those to which a pointer was found) are not shown. +==24913== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24913== +==24913== For lists of detected and suppressed errors, rerun with: -s +==24913== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt b/log-files/2024-09-20_21-41-09/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt new file mode 100644 index 000000000..b61fbd9d3 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt @@ -0,0 +1,73 @@ +==41329== Memcheck, a memory error detector +==41329== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41329== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41329== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBenchmarkPreconditionersForMeshIndependence -malloc_debug -malloc_dump -memory_info +==41329== Parent PID: 24036 +==41329== +==41329== +==41329== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41329== Open file descriptor 12: +==41329== at 0xBCEC07D: pipe (pipe.c:29) +==41329== by 0x1432407D: ??? +==41329== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41329== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41329== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41329== by 0xA160D38: PetscInitialize (pinit.c:924) +==41329== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41329== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41329== by 0x11D9C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41329== by 0x1189AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41329== by 0x11B52E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41329== by 0x11B3CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41329== by 0x11BA65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41329== by 0x116DD5: main (TestBenchmarkPreconditionersForMeshIndependence.cpp:19) +==41329== +==41329== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41329== at 0xBCF0A1C: __open_nocancel (open64_nocancel.c:39) +==41329== by 0xBC74BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41329== by 0xB3F0822: ??? +==41329== by 0xB3F096F: ??? +==41329== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41329== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41329== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41329== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41329== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41329== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41329== by 0xA160D38: PetscInitialize (pinit.c:924) +==41329== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41329== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41329== by 0x11D9C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41329== by 0x1189AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41329== by 0x11B52E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41329== by 0x11B3CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41329== by 0x11BA65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41329== by 0x116DD5: main (TestBenchmarkPreconditionersForMeshIndependence.cpp:19) +==41329== +==41329== Open file descriptor 113: +==41329== +==41329== +==41329== Open file descriptor 110: +==41329== +==41329== +==41329== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt +==41329== +==41329== +==41329== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41329== +==41329== +==41329== +==41329== HEAP SUMMARY: +==41329== in use at exit: 618,759 bytes in 8,245 blocks +==41329== total heap usage: 466,127 allocs, 457,882 frees, 1,542,132,490 bytes allocated +==41329== +==41329== LEAK SUMMARY: +==41329== definitely lost: 0 bytes in 0 blocks +==41329== indirectly lost: 0 bytes in 0 blocks +==41329== possibly lost: 0 bytes in 0 blocks +==41329== still reachable: 40 bytes in 3 blocks +==41329== suppressed: 618,719 bytes in 8,242 blocks +==41329== Reachable blocks (those to which a pointer was found) are not shown. +==41329== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41329== +==41329== For lists of detected and suppressed errors, rerun with: -s +==41329== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 51 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestBidomainDistributedMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestBidomainDistributedMesh_valgrind.txt new file mode 100644 index 000000000..91f69fe8e --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestBidomainDistributedMesh_valgrind.txt @@ -0,0 +1,73 @@ +==41343== Memcheck, a memory error detector +==41343== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41343== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41343== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainDistributedMesh -malloc_debug -malloc_dump -memory_info +==41343== Parent PID: 24036 +==41343== +==41343== +==41343== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41343== Open file descriptor 12: +==41343== at 0xBC0507D: pipe (pipe.c:29) +==41343== by 0x1432407D: ??? +==41343== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41343== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41343== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41343== by 0xA160D38: PetscInitialize (pinit.c:924) +==41343== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41343== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41343== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41343== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41343== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41343== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41343== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41343== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) +==41343== +==41343== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41343== at 0xBC09A1C: __open_nocancel (open64_nocancel.c:39) +==41343== by 0xBB8DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41343== by 0xB3F0822: ??? +==41343== by 0xB3F096F: ??? +==41343== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41343== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41343== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41343== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41343== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41343== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41343== by 0xA160D38: PetscInitialize (pinit.c:924) +==41343== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41343== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41343== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41343== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41343== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41343== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41343== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41343== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) +==41343== +==41343== Open file descriptor 113: +==41343== +==41343== +==41343== Open file descriptor 110: +==41343== +==41343== +==41343== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainDistributedMesh_valgrind.txt +==41343== +==41343== +==41343== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41343== +==41343== +==41343== +==41343== HEAP SUMMARY: +==41343== in use at exit: 618,814 bytes in 8,248 blocks +==41343== total heap usage: 428,253 allocs, 420,005 frees, 1,437,393,453 bytes allocated +==41343== +==41343== LEAK SUMMARY: +==41343== definitely lost: 0 bytes in 0 blocks +==41343== indirectly lost: 0 bytes in 0 blocks +==41343== possibly lost: 0 bytes in 0 blocks +==41343== still reachable: 24 bytes in 2 blocks +==41343== suppressed: 618,790 bytes in 8,246 blocks +==41343== Reachable blocks (those to which a pointer was found) are not shown. +==41343== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41343== +==41343== For lists of detected and suppressed errors, rerun with: -s +==41343== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 55 from 38) diff --git a/log-files/2024-09-20_21-41-09/TestBidomainProblem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestBidomainProblem_valgrind.txt new file mode 100644 index 000000000..53311bf1a --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41362== Memcheck, a memory error detector +==41362== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41362== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41362== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainProblem -malloc_debug -malloc_dump -memory_info +==41362== Parent PID: 24036 +==41362== +==41362== +==41362== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41362== Open file descriptor 12: +==41362== at 0xC0E807D: pipe (pipe.c:29) +==41362== by 0x1432407D: ??? +==41362== by 0xFADE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41362== by 0xB9D6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41362== by 0xB96FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41362== by 0xA666D38: PetscInitialize (pinit.c:924) +==41362== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41362== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41362== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41362== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41362== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41362== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41362== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41362== by 0x138285: main (TestBidomainProblem.cpp:19) +==41362== +==41362== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41362== at 0xC0ECA1C: __open_nocancel (open64_nocancel.c:39) +==41362== by 0xC070BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41362== by 0xA511822: ??? +==41362== by 0xA51196F: ??? +==41362== by 0xFB836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41362== by 0xFB83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41362== by 0xFB39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41362== by 0xFADE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41362== by 0xB9D6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41362== by 0xB96FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41362== by 0xA666D38: PetscInitialize (pinit.c:924) +==41362== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41362== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41362== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41362== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41362== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41362== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41362== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41362== by 0x138285: main (TestBidomainProblem.cpp:19) +==41362== +==41362== Open file descriptor 113: +==41362== +==41362== +==41362== Open file descriptor 110: +==41362== +==41362== +==41362== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainProblem_valgrind.txt +==41362== +==41362== +==41362== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41362== +==41362== +==41362== +==41362== HEAP SUMMARY: +==41362== in use at exit: 618,814 bytes in 8,248 blocks +==41362== total heap usage: 584,919 allocs, 576,671 frees, 1,548,983,912 bytes allocated +==41362== +==41362== LEAK SUMMARY: +==41362== definitely lost: 0 bytes in 0 blocks +==41362== indirectly lost: 0 bytes in 0 blocks +==41362== possibly lost: 0 bytes in 0 blocks +==41362== still reachable: 24 bytes in 2 blocks +==41362== suppressed: 618,790 bytes in 8,246 blocks +==41362== Reachable blocks (those to which a pointer was found) are not shown. +==41362== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41362== +==41362== For lists of detected and suppressed errors, rerun with: -s +==41362== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 103 from 38) diff --git a/log-files/2024-09-20_21-41-09/TestBidomainTissue_valgrind.txt b/log-files/2024-09-20_21-41-09/TestBidomainTissue_valgrind.txt new file mode 100644 index 000000000..5cd2b8dd1 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestBidomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==41353== Memcheck, a memory error detector +==41353== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41353== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41353== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainTissue -malloc_debug -malloc_dump -memory_info +==41353== Parent PID: 24036 +==41353== +==41353== +==41353== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41353== Open file descriptor 12: +==41353== at 0xBB9F07D: pipe (pipe.c:29) +==41353== by 0x1432407D: ??? +==41353== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41353== by 0xBF1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41353== by 0xBEB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41353== by 0xA254D38: PetscInitialize (pinit.c:924) +==41353== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41353== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41353== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41353== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41353== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41353== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41353== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41353== by 0x1326C5: main (TestBidomainTissue.cpp:18) +==41353== +==41353== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41353== at 0xBBA3A1C: __open_nocancel (open64_nocancel.c:39) +==41353== by 0xBB27BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41353== by 0xA101822: ??? +==41353== by 0xA10196F: ??? +==41353== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41353== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41353== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41353== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41353== by 0xBF1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41353== by 0xBEB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41353== by 0xA254D38: PetscInitialize (pinit.c:924) +==41353== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41353== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41353== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41353== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41353== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41353== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41353== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41353== by 0x1326C5: main (TestBidomainTissue.cpp:18) +==41353== +==41353== Open file descriptor 113: +==41353== +==41353== +==41353== Open file descriptor 110: +==41353== +==41353== +==41353== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainTissue_valgrind.txt +==41353== +==41353== +==41353== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41353== +==41353== +==41353== +==41353== HEAP SUMMARY: +==41353== in use at exit: 618,334 bytes in 8,238 blocks +==41353== total heap usage: 192,058 allocs, 183,820 frees, 1,381,063,380 bytes allocated +==41353== +==41353== LEAK SUMMARY: +==41353== definitely lost: 0 bytes in 0 blocks +==41353== indirectly lost: 0 bytes in 0 blocks +==41353== possibly lost: 0 bytes in 0 blocks +==41353== still reachable: 24 bytes in 2 blocks +==41353== suppressed: 618,310 bytes in 8,236 blocks +==41353== Reachable blocks (those to which a pointer was found) are not shown. +==41353== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41353== +==41353== For lists of detected and suppressed errors, rerun with: -s +==41353== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestBidomainWithBathProblem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestBidomainWithBathProblem_valgrind.txt new file mode 100644 index 000000000..55baaa7e3 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestBidomainWithBathProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41363== Memcheck, a memory error detector +==41363== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41363== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41363== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainWithBathProblem -malloc_debug -malloc_dump -memory_info +==41363== Parent PID: 24036 +==41363== +==41363== +==41363== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41363== Open file descriptor 12: +==41363== at 0xAC6307D: pipe (pipe.c:29) +==41363== by 0x1432407D: ??? +==41363== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41363== by 0xC35E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41363== by 0xC2F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41363== by 0xAFEED38: PetscInitialize (pinit.c:924) +==41363== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41363== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41363== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41363== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41363== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41363== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41363== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41363== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) +==41363== +==41363== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41363== at 0xAC67A1C: __open_nocancel (open64_nocancel.c:39) +==41363== by 0xABEBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41363== by 0xA49E822: ??? +==41363== by 0xA49E96F: ??? +==41363== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41363== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41363== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41363== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41363== by 0xC35E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41363== by 0xC2F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41363== by 0xAFEED38: PetscInitialize (pinit.c:924) +==41363== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41363== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41363== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41363== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41363== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41363== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41363== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41363== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) +==41363== +==41363== Open file descriptor 113: +==41363== +==41363== +==41363== Open file descriptor 110: +==41363== +==41363== +==41363== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainWithBathProblem_valgrind.txt +==41363== +==41363== +==41363== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41363== +==41363== +==41363== +==41363== HEAP SUMMARY: +==41363== in use at exit: 618,743 bytes in 8,244 blocks +==41363== total heap usage: 1,394,261 allocs, 1,386,017 frees, 1,987,570,440 bytes allocated +==41363== +==41363== LEAK SUMMARY: +==41363== definitely lost: 0 bytes in 0 blocks +==41363== indirectly lost: 0 bytes in 0 blocks +==41363== possibly lost: 0 bytes in 0 blocks +==41363== still reachable: 24 bytes in 2 blocks +==41363== suppressed: 618,719 bytes in 8,242 blocks +==41363== Reachable blocks (those to which a pointer was found) are not shown. +==41363== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41363== +==41363== For lists of detected and suppressed errors, rerun with: -s +==41363== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 69 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestBidomainWithSvi_valgrind.txt b/log-files/2024-09-20_21-41-09/TestBidomainWithSvi_valgrind.txt new file mode 100644 index 000000000..3f4de858c --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestBidomainWithSvi_valgrind.txt @@ -0,0 +1,73 @@ +==41364== Memcheck, a memory error detector +==41364== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41364== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41364== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainWithSvi -malloc_debug -malloc_dump -memory_info +==41364== Parent PID: 24036 +==41364== +==41364== +==41364== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41364== Open file descriptor 12: +==41364== at 0xA7DF07D: pipe (pipe.c:29) +==41364== by 0x1432407D: ??? +==41364== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41364== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41364== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41364== by 0xAB68D38: PetscInitialize (pinit.c:924) +==41364== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41364== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41364== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41364== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41364== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41364== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41364== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41364== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) +==41364== +==41364== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41364== at 0xA7E3A1C: __open_nocancel (open64_nocancel.c:39) +==41364== by 0xA767BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41364== by 0xA101822: ??? +==41364== by 0xA10196F: ??? +==41364== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41364== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41364== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41364== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41364== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41364== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41364== by 0xAB68D38: PetscInitialize (pinit.c:924) +==41364== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41364== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41364== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41364== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41364== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41364== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41364== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41364== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) +==41364== +==41364== Open file descriptor 113: +==41364== +==41364== +==41364== Open file descriptor 110: +==41364== +==41364== +==41364== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainWithSvi_valgrind.txt +==41364== +==41364== +==41364== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41364== +==41364== +==41364== +==41364== HEAP SUMMARY: +==41364== in use at exit: 618,743 bytes in 8,244 blocks +==41364== total heap usage: 3,540,033 allocs, 3,531,789 frees, 2,046,652,001 bytes allocated +==41364== +==41364== LEAK SUMMARY: +==41364== definitely lost: 0 bytes in 0 blocks +==41364== indirectly lost: 0 bytes in 0 blocks +==41364== possibly lost: 0 bytes in 0 blocks +==41364== still reachable: 24 bytes in 2 blocks +==41364== suppressed: 618,719 bytes in 8,242 blocks +==41364== Reachable blocks (those to which a pointer was found) are not shown. +==41364== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41364== +==41364== For lists of detected and suppressed errors, rerun with: -s +==41364== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 72 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestBoundaryConditionsContainer_valgrind.txt b/log-files/2024-09-20_21-41-09/TestBoundaryConditionsContainer_valgrind.txt new file mode 100644 index 000000000..be99c34c2 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestBoundaryConditionsContainer_valgrind.txt @@ -0,0 +1,73 @@ +==25205== Memcheck, a memory error detector +==25205== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25205== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25205== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestBoundaryConditionsContainer -malloc_debug -malloc_dump -memory_info +==25205== Parent PID: 24036 +==25205== +==25205== +==25205== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25205== Open file descriptor 12: +==25205== at 0x844207D: pipe (pipe.c:29) +==25205== by 0x104D507D: ??? +==25205== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25205== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25205== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25205== by 0x6B11D38: PetscInitialize (pinit.c:924) +==25205== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25205== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25205== by 0x13D842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25205== by 0x13868F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25205== by 0x13B1AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25205== by 0x13B0A6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25205== by 0x13B6B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25205== by 0x136E85: main (TestBoundaryConditionsContainer.cpp:18) +==25205== +==25205== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25205== at 0x8446A1C: __open_nocancel (open64_nocancel.c:39) +==25205== by 0x83CABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25205== by 0x69BE822: ??? +==25205== by 0x69BE96F: ??? +==25205== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25205== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25205== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25205== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25205== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25205== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25205== by 0x6B11D38: PetscInitialize (pinit.c:924) +==25205== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25205== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25205== by 0x13D842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25205== by 0x13868F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25205== by 0x13B1AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25205== by 0x13B0A6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25205== by 0x13B6B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25205== by 0x136E85: main (TestBoundaryConditionsContainer.cpp:18) +==25205== +==25205== Open file descriptor 113: +==25205== +==25205== +==25205== Open file descriptor 110: +==25205== +==25205== +==25205== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBoundaryConditionsContainer_valgrind.txt +==25205== +==25205== +==25205== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25205== +==25205== +==25205== +==25205== HEAP SUMMARY: +==25205== in use at exit: 618,254 bytes in 8,238 blocks +==25205== total heap usage: 54,303 allocs, 46,065 frees, 1,340,402,417 bytes allocated +==25205== +==25205== LEAK SUMMARY: +==25205== definitely lost: 0 bytes in 0 blocks +==25205== indirectly lost: 0 bytes in 0 blocks +==25205== possibly lost: 0 bytes in 0 blocks +==25205== still reachable: 24 bytes in 2 blocks +==25205== suppressed: 618,230 bytes in 8,236 blocks +==25205== Reachable blocks (those to which a pointer was found) are not shown. +==25205== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25205== +==25205== For lists of detected and suppressed errors, rerun with: -s +==25205== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestBuskeForces_valgrind.txt b/log-files/2024-09-20_21-41-09/TestBuskeForces_valgrind.txt new file mode 100644 index 000000000..80970222c --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestBuskeForces_valgrind.txt @@ -0,0 +1,73 @@ +==25852== Memcheck, a memory error detector +==25852== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25852== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25852== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestBuskeForces -malloc_debug -malloc_dump -memory_info +==25852== Parent PID: 24036 +==25852== +==25852== +==25852== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25852== Open file descriptor 12: +==25852== at 0xF92407D: pipe (pipe.c:29) +==25852== by 0x196AD07D: ??? +==25852== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25852== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25852== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25852== by 0x10210D38: PetscInitialize (pinit.c:924) +==25852== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25852== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25852== by 0x1373C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25852== by 0x1302A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25852== by 0x132EDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25852== by 0x132DD7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25852== by 0x1333EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25852== by 0x12EAA5: main (TestBuskeForces.cpp:18) +==25852== +==25852== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25852== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==25852== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25852== by 0xF137822: ??? +==25852== by 0xF13796F: ??? +==25852== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25852== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25852== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25852== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25852== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25852== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25852== by 0x10210D38: PetscInitialize (pinit.c:924) +==25852== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25852== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25852== by 0x1373C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25852== by 0x1302A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25852== by 0x132EDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25852== by 0x132DD7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25852== by 0x1333EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25852== by 0x12EAA5: main (TestBuskeForces.cpp:18) +==25852== +==25852== Open file descriptor 113: +==25852== +==25852== +==25852== Open file descriptor 110: +==25852== +==25852== +==25852== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBuskeForces_valgrind.txt +==25852== +==25852== +==25852== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25852== +==25852== +==25852== +==25852== HEAP SUMMARY: +==25852== in use at exit: 618,350 bytes in 8,239 blocks +==25852== total heap usage: 56,044 allocs, 47,805 frees, 1,339,842,007 bytes allocated +==25852== +==25852== LEAK SUMMARY: +==25852== definitely lost: 0 bytes in 0 blocks +==25852== indirectly lost: 0 bytes in 0 blocks +==25852== possibly lost: 0 bytes in 0 blocks +==25852== still reachable: 56 bytes in 3 blocks +==25852== suppressed: 618,294 bytes in 8,236 blocks +==25852== Reachable blocks (those to which a pointer was found) are not shown. +==25852== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25852== +==25852== For lists of detected and suppressed errors, rerun with: -s +==25852== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCaBasedCellPopulation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCaBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..1a1f2caae --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCaBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==25859== Memcheck, a memory error detector +==25859== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25859== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25859== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==25859== Parent PID: 24036 +==25859== +==25859== +==25859== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25859== Open file descriptor 12: +==25859== at 0xF83B07D: pipe (pipe.c:29) +==25859== by 0x196AD07D: ??? +==25859== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25859== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25859== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25859== by 0x10127D38: PetscInitialize (pinit.c:924) +==25859== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25859== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25859== by 0x16556C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25859== by 0x15DBC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25859== by 0x160D98: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25859== by 0x160C38: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25859== by 0x1612CF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25859== by 0x15BFE5: main (TestCaBasedCellPopulation.cpp:19) +==25859== +==25859== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25859== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==25859== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25859== by 0xF137822: ??? +==25859== by 0xF13796F: ??? +==25859== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25859== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25859== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25859== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25859== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25859== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25859== by 0x10127D38: PetscInitialize (pinit.c:924) +==25859== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25859== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25859== by 0x16556C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25859== by 0x15DBC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25859== by 0x160D98: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25859== by 0x160C38: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25859== by 0x1612CF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25859== by 0x15BFE5: main (TestCaBasedCellPopulation.cpp:19) +==25859== +==25859== Open file descriptor 113: +==25859== +==25859== +==25859== Open file descriptor 110: +==25859== +==25859== +==25859== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaBasedCellPopulation_valgrind.txt +==25859== +==25859== +==25859== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25859== +==25859== +==25859== +==25859== HEAP SUMMARY: +==25859== in use at exit: 618,350 bytes in 8,239 blocks +==25859== total heap usage: 75,852 allocs, 67,613 frees, 1,347,378,713 bytes allocated +==25859== +==25859== LEAK SUMMARY: +==25859== definitely lost: 0 bytes in 0 blocks +==25859== indirectly lost: 0 bytes in 0 blocks +==25859== possibly lost: 0 bytes in 0 blocks +==25859== still reachable: 56 bytes in 3 blocks +==25859== suppressed: 618,294 bytes in 8,236 blocks +==25859== Reachable blocks (those to which a pointer was found) are not shown. +==25859== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25859== +==25859== For lists of detected and suppressed errors, rerun with: -s +==25859== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCaBasedDivisionRules_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCaBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..06395f706 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCaBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==25872== Memcheck, a memory error detector +==25872== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25872== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25872== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==25872== Parent PID: 24036 +==25872== +==25872== +==25872== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25872== Open file descriptor 12: +==25872== at 0xF09707D: pipe (pipe.c:29) +==25872== by 0x196AC07D: ??? +==25872== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25872== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25872== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25872== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25872== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25872== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25872== by 0x12E085: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25872== by 0x128EDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25872== by 0x12B8BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25872== by 0x12B75E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25872== by 0x12BDF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25872== by 0x127305: main (TestCaBasedDivisionRules.cpp:19) +==25872== +==25872== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25872== at 0xF09BA1C: __open_nocancel (open64_nocancel.c:39) +==25872== by 0xF01FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25872== by 0xD4DA822: ??? +==25872== by 0xD4DA96F: ??? +==25872== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25872== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25872== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25872== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25872== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25872== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25872== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25872== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25872== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25872== by 0x12E085: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25872== by 0x128EDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25872== by 0x12B8BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25872== by 0x12B75E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25872== by 0x12BDF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25872== by 0x127305: main (TestCaBasedDivisionRules.cpp:19) +==25872== +==25872== Open file descriptor 113: +==25872== +==25872== +==25872== Open file descriptor 110: +==25872== +==25872== +==25872== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaBasedDivisionRules_valgrind.txt +==25872== +==25872== +==25872== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25872== +==25872== +==25872== +==25872== HEAP SUMMARY: +==25872== in use at exit: 618,366 bytes in 8,240 blocks +==25872== total heap usage: 56,337 allocs, 48,097 frees, 1,339,110,127 bytes allocated +==25872== +==25872== LEAK SUMMARY: +==25872== definitely lost: 0 bytes in 0 blocks +==25872== indirectly lost: 0 bytes in 0 blocks +==25872== possibly lost: 0 bytes in 0 blocks +==25872== still reachable: 72 bytes in 4 blocks +==25872== suppressed: 618,294 bytes in 8,236 blocks +==25872== Reachable blocks (those to which a pointer was found) are not shown. +==25872== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25872== +==25872== For lists of detected and suppressed errors, rerun with: -s +==25872== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCaUpdateRules_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCaUpdateRules_valgrind.txt new file mode 100644 index 000000000..a9cc5a1c7 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCaUpdateRules_valgrind.txt @@ -0,0 +1,73 @@ +==25881== Memcheck, a memory error detector +==25881== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25881== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25881== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaUpdateRules -malloc_debug -malloc_dump -memory_info +==25881== Parent PID: 24036 +==25881== +==25881== +==25881== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25881== Open file descriptor 12: +==25881== at 0xDBE007D: pipe (pipe.c:29) +==25881== by 0x196AD07D: ??? +==25881== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25881== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25881== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25881== by 0x10129D38: PetscInitialize (pinit.c:924) +==25881== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25881== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25881== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25881== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25881== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25881== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25881== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25881== by 0x12A645: main (TestCaUpdateRules.cpp:18) +==25881== +==25881== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25881== at 0xDBE4A1C: __open_nocancel (open64_nocancel.c:39) +==25881== by 0xDB68BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25881== by 0xD4DA822: ??? +==25881== by 0xD4DA96F: ??? +==25881== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25881== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25881== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25881== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25881== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25881== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25881== by 0x10129D38: PetscInitialize (pinit.c:924) +==25881== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25881== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25881== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25881== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25881== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25881== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25881== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25881== by 0x12A645: main (TestCaUpdateRules.cpp:18) +==25881== +==25881== Open file descriptor 113: +==25881== +==25881== +==25881== Open file descriptor 110: +==25881== +==25881== +==25881== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaUpdateRules_valgrind.txt +==25881== +==25881== +==25881== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25881== +==25881== +==25881== +==25881== HEAP SUMMARY: +==25881== in use at exit: 618,350 bytes in 8,239 blocks +==25881== total heap usage: 55,757 allocs, 47,518 frees, 1,339,201,910 bytes allocated +==25881== +==25881== LEAK SUMMARY: +==25881== definitely lost: 0 bytes in 0 blocks +==25881== indirectly lost: 0 bytes in 0 blocks +==25881== possibly lost: 0 bytes in 0 blocks +==25881== still reachable: 56 bytes in 3 blocks +==25881== suppressed: 618,294 bytes in 8,236 blocks +==25881== Reachable blocks (those to which a pointer was found) are not shown. +==25881== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25881== +==25881== For lists of detected and suppressed errors, rerun with: -s +==25881== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCableTestProblem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCableTestProblem_valgrind.txt new file mode 100644 index 000000000..7ab4ed054 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCableTestProblem_valgrind.txt @@ -0,0 +1,73 @@ +==25002== Memcheck, a memory error detector +==25002== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25002== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25002== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestCableTestProblem -malloc_debug -malloc_dump -memory_info +==25002== Parent PID: 24036 +==25002== +==25002== +==25002== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25002== Open file descriptor 12: +==25002== at 0x84E707D: pipe (pipe.c:29) +==25002== by 0x104D507D: ??? +==25002== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25002== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25002== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25002== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25002== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25002== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25002== by 0x1419F6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25002== by 0x13CAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25002== by 0x13F69A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25002== by 0x13F595: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25002== by 0x13FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25002== by 0x13B2F5: main (TestCableTestProblem.cpp:18) +==25002== +==25002== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25002== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25002== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25002== by 0x7D3C822: ??? +==25002== by 0x7D3C96F: ??? +==25002== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25002== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25002== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25002== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25002== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25002== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25002== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25002== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25002== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25002== by 0x1419F6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25002== by 0x13CAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25002== by 0x13F69A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25002== by 0x13F595: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25002== by 0x13FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25002== by 0x13B2F5: main (TestCableTestProblem.cpp:18) +==25002== +==25002== Open file descriptor 113: +==25002== +==25002== +==25002== Open file descriptor 110: +==25002== +==25002== +==25002== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCableTestProblem_valgrind.txt +==25002== +==25002== +==25002== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25002== +==25002== +==25002== +==25002== HEAP SUMMARY: +==25002== in use at exit: 618,254 bytes in 8,238 blocks +==25002== total heap usage: 104,260 allocs, 96,022 frees, 1,341,042,857 bytes allocated +==25002== +==25002== LEAK SUMMARY: +==25002== definitely lost: 0 bytes in 0 blocks +==25002== indirectly lost: 0 bytes in 0 blocks +==25002== possibly lost: 0 bytes in 0 blocks +==25002== still reachable: 24 bytes in 2 blocks +==25002== suppressed: 618,230 bytes in 8,236 blocks +==25002== Reachable blocks (those to which a pointer was found) are not shown. +==25002== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25002== +==25002== For lists of detected and suppressed errors, rerun with: -s +==25002== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt new file mode 100644 index 000000000..86ab15dcf --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt @@ -0,0 +1,73 @@ +==43390== Memcheck, a memory error detector +==43390== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43390== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43390== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacElectroMechanicsFurtherFunctionality -malloc_debug -malloc_dump -memory_info +==43390== Parent PID: 24036 +==43390== +==43390== +==43390== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43390== Open file descriptor 12: +==43390== at 0xBDA807D: pipe (pipe.c:29) +==43390== by 0x1432407D: ??? +==43390== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43390== by 0xBFA5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43390== by 0xBF3ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43390== by 0xA353D38: PetscInitialize (pinit.c:924) +==43390== by 0xA22A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43390== by 0xA22A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43390== by 0x123A6C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43390== by 0x11EC6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43390== by 0x1213DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43390== by 0x12127F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43390== by 0x121915: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43390== by 0x11D095: main (TestCardiacElectroMechanicsFurtherFunctionality.cpp:19) +==43390== +==43390== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43390== at 0xBDACA1C: __open_nocancel (open64_nocancel.c:39) +==43390== by 0xBD30BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43390== by 0xB5E3822: ??? +==43390== by 0xB5E396F: ??? +==43390== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43390== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43390== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43390== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43390== by 0xBFA5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43390== by 0xBF3ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43390== by 0xA353D38: PetscInitialize (pinit.c:924) +==43390== by 0xA22A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43390== by 0xA22A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43390== by 0x123A6C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43390== by 0x11EC6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43390== by 0x1213DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43390== by 0x12127F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43390== by 0x121915: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43390== by 0x11D095: main (TestCardiacElectroMechanicsFurtherFunctionality.cpp:19) +==43390== +==43390== Open file descriptor 113: +==43390== +==43390== +==43390== Open file descriptor 110: +==43390== +==43390== +==43390== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt +==43390== +==43390== +==43390== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43390== +==43390== +==43390== +==43390== HEAP SUMMARY: +==43390== in use at exit: 618,743 bytes in 8,244 blocks +==43390== total heap usage: 1,199,844 allocs, 1,191,600 frees, 1,496,533,938 bytes allocated +==43390== +==43390== LEAK SUMMARY: +==43390== definitely lost: 0 bytes in 0 blocks +==43390== indirectly lost: 0 bytes in 0 blocks +==43390== possibly lost: 0 bytes in 0 blocks +==43390== still reachable: 24 bytes in 2 blocks +==43390== suppressed: 618,719 bytes in 8,242 blocks +==43390== Reachable blocks (those to which a pointer was found) are not shown. +==43390== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43390== +==43390== For lists of detected and suppressed errors, rerun with: -s +==43390== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 57 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCardiacElectroMechanicsProblem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCardiacElectroMechanicsProblem_valgrind.txt new file mode 100644 index 000000000..c8f8f6537 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCardiacElectroMechanicsProblem_valgrind.txt @@ -0,0 +1,73 @@ +==43361== Memcheck, a memory error detector +==43361== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43361== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43361== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacElectroMechanicsProblem -malloc_debug -malloc_dump -memory_info +==43361== Parent PID: 24036 +==43361== +==43361== +==43361== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43361== Open file descriptor 12: +==43361== at 0xABF007D: pipe (pipe.c:29) +==43361== by 0x1432407D: ??? +==43361== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43361== by 0xA3F7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43361== by 0xA390D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43361== by 0xADFBD38: PetscInitialize (pinit.c:924) +==43361== by 0xA2B91D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43361== by 0xA2B9227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43361== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43361== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43361== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43361== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43361== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43361== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) +==43361== +==43361== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43361== at 0xABF4A1C: __open_nocancel (open64_nocancel.c:39) +==43361== by 0xAB78BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43361== by 0xA2F4822: ??? +==43361== by 0xA2F496F: ??? +==43361== by 0xDA036DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43361== by 0xDA03938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43361== by 0xD9B9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43361== by 0xD95E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43361== by 0xA3F7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43361== by 0xA390D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43361== by 0xADFBD38: PetscInitialize (pinit.c:924) +==43361== by 0xA2B91D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43361== by 0xA2B9227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43361== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43361== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43361== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43361== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43361== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43361== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) +==43361== +==43361== Open file descriptor 113: +==43361== +==43361== +==43361== Open file descriptor 110: +==43361== +==43361== +==43361== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacElectroMechanicsProblem_valgrind.txt +==43361== +==43361== +==43361== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43361== +==43361== +==43361== +==43361== HEAP SUMMARY: +==43361== in use at exit: 618,814 bytes in 8,248 blocks +==43361== total heap usage: 580,635 allocs, 572,387 frees, 1,482,472,841 bytes allocated +==43361== +==43361== LEAK SUMMARY: +==43361== definitely lost: 0 bytes in 0 blocks +==43361== indirectly lost: 0 bytes in 0 blocks +==43361== possibly lost: 0 bytes in 0 blocks +==43361== still reachable: 24 bytes in 2 blocks +==43361== suppressed: 618,790 bytes in 8,246 blocks +==43361== Reachable blocks (those to which a pointer was found) are not shown. +==43361== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43361== +==43361== For lists of detected and suppressed errors, rerun with: -s +==43361== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 79 from 38) diff --git a/log-files/2024-09-20_21-41-09/TestCardiacSimulationArchiver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCardiacSimulationArchiver_valgrind.txt new file mode 100644 index 000000000..788217316 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCardiacSimulationArchiver_valgrind.txt @@ -0,0 +1,73 @@ +==43784== Memcheck, a memory error detector +==43784== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43784== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43784== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacSimulationArchiver -malloc_debug -malloc_dump -memory_info +==43784== Parent PID: 24036 +==43784== +==43784== +==43784== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43784== Open file descriptor 12: +==43784== at 0xBFAF07D: pipe (pipe.c:29) +==43784== by 0x1432407D: ??? +==43784== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43784== by 0xC32C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43784== by 0xC2C5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43784== by 0xA666D38: PetscInitialize (pinit.c:924) +==43784== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43784== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43784== by 0x207DA8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43784== by 0x200F5B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43784== by 0x204A44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43784== by 0x2048E4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43784== by 0x204F7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43784== by 0x1FF1D5: main (TestCardiacSimulationArchiver.cpp:19) +==43784== +==43784== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43784== at 0xBFB3A1C: __open_nocancel (open64_nocancel.c:39) +==43784== by 0xBF37BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43784== by 0xA511822: ??? +==43784== by 0xA51196F: ??? +==43784== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43784== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43784== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43784== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43784== by 0xC32C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43784== by 0xC2C5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43784== by 0xA666D38: PetscInitialize (pinit.c:924) +==43784== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43784== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43784== by 0x207DA8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43784== by 0x200F5B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43784== by 0x204A44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43784== by 0x2048E4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43784== by 0x204F7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43784== by 0x1FF1D5: main (TestCardiacSimulationArchiver.cpp:19) +==43784== +==43784== Open file descriptor 113: +==43784== +==43784== +==43784== Open file descriptor 110: +==43784== +==43784== +==43784== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacSimulationArchiver_valgrind.txt +==43784== +==43784== +==43784== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43784== +==43784== +==43784== +==43784== HEAP SUMMARY: +==43784== in use at exit: 618,743 bytes in 8,244 blocks +==43784== total heap usage: 2,894,962 allocs, 2,886,718 frees, 2,307,100,272 bytes allocated +==43784== +==43784== LEAK SUMMARY: +==43784== definitely lost: 0 bytes in 0 blocks +==43784== indirectly lost: 0 bytes in 0 blocks +==43784== possibly lost: 0 bytes in 0 blocks +==43784== still reachable: 24 bytes in 2 blocks +==43784== suppressed: 618,719 bytes in 8,242 blocks +==43784== Reachable blocks (those to which a pointer was found) are not shown. +==43784== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43784== +==43784== For lists of detected and suppressed errors, rerun with: -s +==43784== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 138 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCardiacSimulation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCardiacSimulation_valgrind.txt new file mode 100644 index 000000000..f076cf2e0 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCardiacSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==43775== Memcheck, a memory error detector +==43775== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43775== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43775== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacSimulation -malloc_debug -malloc_dump -memory_info +==43775== Parent PID: 24036 +==43775== +==43775== +==43775== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43775== Open file descriptor 12: +==43775== at 0x892407D: pipe (pipe.c:29) +==43775== by 0x1432507D: ??? +==43775== by 0xEE6D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43775== by 0xA01F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43775== by 0x9FB8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43775== by 0x8CAFD38: PetscInitialize (pinit.c:924) +==43775== by 0x820D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43775== by 0x820D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43775== by 0x1202B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43775== by 0x11A98D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43775== by 0x11E13C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43775== by 0x11DFDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43775== by 0x11E673: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43775== by 0x118DB5: main (TestCardiacSimulation.cpp:19) +==43775== +==43775== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43775== at 0x8928A1C: __open_nocancel (open64_nocancel.c:39) +==43775== by 0x88ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43775== by 0x8248822: ??? +==43775== by 0x824896F: ??? +==43775== by 0xEF126DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43775== by 0xEF12938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43775== by 0xEEC8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43775== by 0xEE6D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43775== by 0xA01F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43775== by 0x9FB8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43775== by 0x8CAFD38: PetscInitialize (pinit.c:924) +==43775== by 0x820D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43775== by 0x820D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43775== by 0x1202B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43775== by 0x11A98D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43775== by 0x11E13C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43775== by 0x11DFDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43775== by 0x11E673: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43775== by 0x118DB5: main (TestCardiacSimulation.cpp:19) +==43775== +==43775== Open file descriptor 113: +==43775== +==43775== +==43775== Open file descriptor 110: +==43775== +==43775== +==43775== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacSimulation_valgrind.txt +==43775== +==43775== +==43775== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43775== +==43775== +==43775== +==43775== HEAP SUMMARY: +==43775== in use at exit: 625,875 bytes in 8,260 blocks +==43775== total heap usage: 4,756,895 allocs, 4,748,635 frees, 2,828,620,714 bytes allocated +==43775== +==43775== LEAK SUMMARY: +==43775== definitely lost: 0 bytes in 0 blocks +==43775== indirectly lost: 0 bytes in 0 blocks +==43775== possibly lost: 0 bytes in 0 blocks +==43775== still reachable: 7,156 bytes in 18 blocks +==43775== suppressed: 618,719 bytes in 8,242 blocks +==43775== Reachable blocks (those to which a pointer was found) are not shown. +==43775== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43775== +==43775== For lists of detected and suppressed errors, rerun with: -s +==43775== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 231 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCellBasedCellProperties_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellBasedCellProperties_valgrind.txt new file mode 100644 index 000000000..81b4729d8 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellBasedCellProperties_valgrind.txt @@ -0,0 +1,73 @@ +==25401== Memcheck, a memory error detector +==25401== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25401== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25401== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedCellProperties -malloc_debug -malloc_dump -memory_info +==25401== Parent PID: 24036 +==25401== +==25401== +==25401== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25401== Open file descriptor 12: +==25401== at 0xED5007D: pipe (pipe.c:29) +==25401== by 0x196AC07D: ??? +==25401== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25401== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25401== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25401== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25401== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25401== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25401== by 0x12F18B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25401== by 0x129EE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25401== by 0x12CAE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25401== by 0x12C980: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25401== by 0x12D017: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25401== by 0x128305: main (TestCellBasedCellProperties.cpp:19) +==25401== +==25401== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25401== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25401== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25401== by 0xD4DA822: ??? +==25401== by 0xD4DA96F: ??? +==25401== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25401== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25401== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25401== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25401== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25401== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25401== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25401== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25401== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25401== by 0x12F18B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25401== by 0x129EE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25401== by 0x12CAE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25401== by 0x12C980: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25401== by 0x12D017: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25401== by 0x128305: main (TestCellBasedCellProperties.cpp:19) +==25401== +==25401== Open file descriptor 113: +==25401== +==25401== +==25401== Open file descriptor 110: +==25401== +==25401== +==25401== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedCellProperties_valgrind.txt +==25401== +==25401== +==25401== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25401== +==25401== +==25401== +==25401== HEAP SUMMARY: +==25401== in use at exit: 618,350 bytes in 8,239 blocks +==25401== total heap usage: 53,419 allocs, 45,180 frees, 1,338,994,984 bytes allocated +==25401== +==25401== LEAK SUMMARY: +==25401== definitely lost: 0 bytes in 0 blocks +==25401== indirectly lost: 0 bytes in 0 blocks +==25401== possibly lost: 0 bytes in 0 blocks +==25401== still reachable: 56 bytes in 3 blocks +==25401== suppressed: 618,294 bytes in 8,236 blocks +==25401== Reachable blocks (those to which a pointer was found) are not shown. +==25401== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25401== +==25401== For lists of detected and suppressed errors, rerun with: -s +==25401== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestCellBasedEllipticPdeSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellBasedEllipticPdeSolver_valgrind.txt new file mode 100644 index 000000000..f692285da --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellBasedEllipticPdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25509== Memcheck, a memory error detector +==25509== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25509== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25509== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedEllipticPdeSolver -malloc_debug -malloc_dump -memory_info +==25509== Parent PID: 24036 +==25509== +==25509== +==25509== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25509== Open file descriptor 12: +==25509== at 0x1108C07D: pipe (pipe.c:29) +==25509== by 0x196AC07D: ??? +==25509== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25509== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25509== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25509== by 0xF651D38: PetscInitialize (pinit.c:924) +==25509== by 0xF5281D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25509== by 0xF528227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25509== by 0x13C922: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25509== by 0x137A33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25509== by 0x13A5DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25509== by 0x13A4D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25509== by 0x13AAE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25509== by 0x136235: main (TestCellBasedEllipticPdeSolver.cpp:18) +==25509== +==25509== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25509== at 0x11090A1C: __open_nocancel (open64_nocancel.c:39) +==25509== by 0x11014BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25509== by 0x108E1822: ??? +==25509== by 0x108E196F: ??? +==25509== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25509== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25509== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25509== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25509== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25509== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25509== by 0xF651D38: PetscInitialize (pinit.c:924) +==25509== by 0xF5281D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25509== by 0xF528227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25509== by 0x13C922: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25509== by 0x137A33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25509== by 0x13A5DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25509== by 0x13A4D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25509== by 0x13AAE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25509== by 0x136235: main (TestCellBasedEllipticPdeSolver.cpp:18) +==25509== +==25509== Open file descriptor 113: +==25509== +==25509== +==25509== Open file descriptor 110: +==25509== +==25509== +==25509== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEllipticPdeSolver_valgrind.txt +==25509== +==25509== +==25509== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25509== +==25509== +==25509== +==25509== HEAP SUMMARY: +==25509== in use at exit: 618,318 bytes in 8,238 blocks +==25509== total heap usage: 55,378 allocs, 47,140 frees, 1,339,444,862 bytes allocated +==25509== +==25509== LEAK SUMMARY: +==25509== definitely lost: 0 bytes in 0 blocks +==25509== indirectly lost: 0 bytes in 0 blocks +==25509== possibly lost: 0 bytes in 0 blocks +==25509== still reachable: 24 bytes in 2 blocks +==25509== suppressed: 618,294 bytes in 8,236 blocks +==25509== Reachable blocks (those to which a pointer was found) are not shown. +==25509== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25509== +==25509== For lists of detected and suppressed errors, rerun with: -s +==25509== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellBasedEllipticPdes_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellBasedEllipticPdes_valgrind.txt new file mode 100644 index 000000000..5f5c48411 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellBasedEllipticPdes_valgrind.txt @@ -0,0 +1,73 @@ +==25497== Memcheck, a memory error detector +==25497== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25497== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25497== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedEllipticPdes -malloc_debug -malloc_dump -memory_info +==25497== Parent PID: 24036 +==25497== +==25497== +==25497== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25497== Open file descriptor 12: +==25497== at 0x10CF207D: pipe (pipe.c:29) +==25497== by 0x196AD07D: ??? +==25497== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25497== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25497== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25497== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25497== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25497== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25497== by 0x12CAB7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25497== by 0x127CC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25497== by 0x12A3DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25497== by 0x12A2D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25497== by 0x12A8EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25497== by 0x1264C5: main (TestCellBasedEllipticPdes.cpp:18) +==25497== +==25497== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25497== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==25497== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25497== by 0xF137822: ??? +==25497== by 0xF13796F: ??? +==25497== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25497== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25497== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25497== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25497== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25497== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25497== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25497== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25497== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25497== by 0x12CAB7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25497== by 0x127CC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25497== by 0x12A3DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25497== by 0x12A2D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25497== by 0x12A8EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25497== by 0x1264C5: main (TestCellBasedEllipticPdes.cpp:18) +==25497== +==25497== Open file descriptor 113: +==25497== +==25497== +==25497== Open file descriptor 110: +==25497== +==25497== +==25497== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEllipticPdes_valgrind.txt +==25497== +==25497== +==25497== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25497== +==25497== +==25497== +==25497== HEAP SUMMARY: +==25497== in use at exit: 618,350 bytes in 8,239 blocks +==25497== total heap usage: 79,162 allocs, 70,923 frees, 1,343,927,016 bytes allocated +==25497== +==25497== LEAK SUMMARY: +==25497== definitely lost: 0 bytes in 0 blocks +==25497== indirectly lost: 0 bytes in 0 blocks +==25497== possibly lost: 0 bytes in 0 blocks +==25497== still reachable: 56 bytes in 3 blocks +==25497== suppressed: 618,294 bytes in 8,236 blocks +==25497== Reachable blocks (those to which a pointer was found) are not shown. +==25497== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25497== +==25497== For lists of detected and suppressed errors, rerun with: -s +==25497== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellBasedEventHandler_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellBasedEventHandler_valgrind.txt new file mode 100644 index 000000000..b9d53a697 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellBasedEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24065== Memcheck, a memory error detector +==24065== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24065== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24065== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCellBasedEventHandler -malloc_debug -malloc_dump -memory_info +==24065== Parent PID: 24036 +==24065== +==24065== +==24065== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24065== Open file descriptor 12: +==24065== at 0x4DEB07D: pipe (pipe.c:29) +==24065== by 0xAEA307D: ??? +==24065== by 0x643A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24065== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24065== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24065== by 0x5036D38: PetscInitialize (pinit.c:924) +==24065== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24065== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24065== by 0x114A22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24065== by 0x110173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24065== by 0x112AEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24065== by 0x1129E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24065== by 0x112FFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24065== by 0x10E975: main (TestCellBasedEventHandler.cpp:18) +==24065== +==24065== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24065== at 0x4DEFA1C: __open_nocancel (open64_nocancel.c:39) +==24065== by 0x4D73BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24065== by 0x4935822: ??? +==24065== by 0x493596F: ??? +==24065== by 0x64E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24065== by 0x64E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24065== by 0x6497922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24065== by 0x643A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24065== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24065== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24065== by 0x5036D38: PetscInitialize (pinit.c:924) +==24065== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24065== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24065== by 0x114A22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24065== by 0x110173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24065== by 0x112AEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24065== by 0x1129E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24065== by 0x112FFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24065== by 0x10E975: main (TestCellBasedEventHandler.cpp:18) +==24065== +==24065== Open file descriptor 113: +==24065== +==24065== +==24065== Open file descriptor 110: +==24065== +==24065== +==24065== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEventHandler_valgrind.txt +==24065== +==24065== +==24065== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24065== +==24065== +==24065== +==24065== HEAP SUMMARY: +==24065== in use at exit: 617,838 bytes in 8,238 blocks +==24065== total heap usage: 44,912 allocs, 36,674 frees, 1,338,159,343 bytes allocated +==24065== +==24065== LEAK SUMMARY: +==24065== definitely lost: 0 bytes in 0 blocks +==24065== indirectly lost: 0 bytes in 0 blocks +==24065== possibly lost: 0 bytes in 0 blocks +==24065== still reachable: 24 bytes in 2 blocks +==24065== suppressed: 617,814 bytes in 8,236 blocks +==24065== Reachable blocks (those to which a pointer was found) are not shown. +==24065== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24065== +==24065== For lists of detected and suppressed errors, rerun with: -s +==24065== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCellBasedParabolicPdes_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellBasedParabolicPdes_valgrind.txt new file mode 100644 index 000000000..d5510a152 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellBasedParabolicPdes_valgrind.txt @@ -0,0 +1,73 @@ +==25523== Memcheck, a memory error detector +==25523== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25523== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25523== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedParabolicPdes -malloc_debug -malloc_dump -memory_info +==25523== Parent PID: 24036 +==25523== +==25523== +==25523== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25523== Open file descriptor 12: +==25523== at 0x10CF207D: pipe (pipe.c:29) +==25523== by 0x196AD07D: ??? +==25523== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25523== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25523== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25523== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25523== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25523== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25523== by 0x12B8B3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25523== by 0x126B23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25523== by 0x1291D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25523== by 0x1290D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25523== by 0x1296E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25523== by 0x125325: main (TestCellBasedParabolicPdes.cpp:18) +==25523== +==25523== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25523== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==25523== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25523== by 0xF137822: ??? +==25523== by 0xF13796F: ??? +==25523== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25523== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25523== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25523== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25523== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25523== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25523== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25523== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25523== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25523== by 0x12B8B3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25523== by 0x126B23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25523== by 0x1291D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25523== by 0x1290D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25523== by 0x1296E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25523== by 0x125325: main (TestCellBasedParabolicPdes.cpp:18) +==25523== +==25523== Open file descriptor 113: +==25523== +==25523== +==25523== Open file descriptor 110: +==25523== +==25523== +==25523== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedParabolicPdes_valgrind.txt +==25523== +==25523== +==25523== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25523== +==25523== +==25523== +==25523== HEAP SUMMARY: +==25523== in use at exit: 618,350 bytes in 8,239 blocks +==25523== total heap usage: 69,554 allocs, 61,315 frees, 1,342,138,099 bytes allocated +==25523== +==25523== LEAK SUMMARY: +==25523== definitely lost: 0 bytes in 0 blocks +==25523== indirectly lost: 0 bytes in 0 blocks +==25523== possibly lost: 0 bytes in 0 blocks +==25523== still reachable: 56 bytes in 3 blocks +==25523== suppressed: 618,294 bytes in 8,236 blocks +==25523== Reachable blocks (those to which a pointer was found) are not shown. +==25523== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25523== +==25523== For lists of detected and suppressed errors, rerun with: -s +==25523== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellBetaCateninWriter_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellBetaCateninWriter_valgrind.txt new file mode 100644 index 000000000..79695fc5d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellBetaCateninWriter_valgrind.txt @@ -0,0 +1,73 @@ +==40564== Memcheck, a memory error detector +==40564== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40564== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40564== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellBetaCateninWriter -malloc_debug -malloc_dump -memory_info +==40564== Parent PID: 24036 +==40564== +==40564== +==40564== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40564== Open file descriptor 12: +==40564== at 0x110FD07D: pipe (pipe.c:29) +==40564== by 0x1B36F07D: ??? +==40564== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40564== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40564== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40564== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40564== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40564== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40564== by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40564== by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40564== by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40564== by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40564== by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40564== by 0x12E905: main (TestCellBetaCateninWriter.cpp:18) +==40564== +==40564== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40564== at 0x11101A1C: __open_nocancel (open64_nocancel.c:39) +==40564== by 0x11085BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40564== by 0x109F7822: ??? +==40564== by 0x109F796F: ??? +==40564== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40564== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40564== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40564== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40564== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40564== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40564== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40564== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40564== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40564== by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40564== by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40564== by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40564== by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40564== by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40564== by 0x12E905: main (TestCellBetaCateninWriter.cpp:18) +==40564== +==40564== Open file descriptor 113: +==40564== +==40564== +==40564== Open file descriptor 110: +==40564== +==40564== +==40564== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBetaCateninWriter_valgrind.txt +==40564== +==40564== +==40564== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40564== +==40564== +==40564== +==40564== HEAP SUMMARY: +==40564== in use at exit: 618,446 bytes in 8,240 blocks +==40564== total heap usage: 63,272 allocs, 55,032 frees, 1,341,084,348 bytes allocated +==40564== +==40564== LEAK SUMMARY: +==40564== definitely lost: 0 bytes in 0 blocks +==40564== indirectly lost: 0 bytes in 0 blocks +==40564== possibly lost: 0 bytes in 0 blocks +==40564== still reachable: 136 bytes in 4 blocks +==40564== suppressed: 618,310 bytes in 8,236 blocks +==40564== Reachable blocks (those to which a pointer was found) are not shown. +==40564== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40564== +==40564== For lists of detected and suppressed errors, rerun with: -s +==40564== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellCycleModelOdeSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellCycleModelOdeSolver_valgrind.txt new file mode 100644 index 000000000..009b21cca --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellCycleModelOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25405== Memcheck, a memory error detector +==25405== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25405== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25405== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellCycleModelOdeSolver -malloc_debug -malloc_dump -memory_info +==25405== Parent PID: 24036 +==25405== +==25405== +==25405== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25405== Open file descriptor 12: +==25405== at 0xEF9407D: pipe (pipe.c:29) +==25405== by 0x196AC07D: ??? +==25405== by 0x13C514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25405== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25405== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25405== by 0xD871D38: PetscInitialize (pinit.c:924) +==25405== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25405== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25405== by 0x162DFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25405== by 0x15D597: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25405== by 0x1604CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25405== by 0x16036A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25405== by 0x160A01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25405== by 0x15B575: main (TestCellCycleModelOdeSolver.cpp:19) +==25405== +==25405== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25405== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25405== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25405== by 0xD71E822: ??? +==25405== by 0xD71E96F: ??? +==25405== by 0x13CF66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25405== by 0x13CF6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25405== by 0x13CAC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25405== by 0x13C512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25405== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25405== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25405== by 0xD871D38: PetscInitialize (pinit.c:924) +==25405== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25405== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25405== by 0x162DFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25405== by 0x15D597: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25405== by 0x1604CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25405== by 0x16036A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25405== by 0x160A01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25405== by 0x15B575: main (TestCellCycleModelOdeSolver.cpp:19) +==25405== +==25405== Open file descriptor 113: +==25405== +==25405== +==25405== Open file descriptor 110: +==25405== +==25405== +==25405== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellCycleModelOdeSolver_valgrind.txt +==25405== +==25405== +==25405== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25405== +==25405== +==25405== +==25405== HEAP SUMMARY: +==25405== in use at exit: 618,350 bytes in 8,239 blocks +==25405== total heap usage: 547,401 allocs, 539,162 frees, 1,344,758,805 bytes allocated +==25405== +==25405== LEAK SUMMARY: +==25405== definitely lost: 0 bytes in 0 blocks +==25405== indirectly lost: 0 bytes in 0 blocks +==25405== possibly lost: 0 bytes in 0 blocks +==25405== still reachable: 56 bytes in 3 blocks +==25405== suppressed: 618,294 bytes in 8,236 blocks +==25405== Reachable blocks (those to which a pointer was found) are not shown. +==25405== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25405== +==25405== For lists of detected and suppressed errors, rerun with: -s +==25405== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellDataMaps_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellDataMaps_valgrind.txt new file mode 100644 index 000000000..4715d4714 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellDataMaps_valgrind.txt @@ -0,0 +1,73 @@ +==25407== Memcheck, a memory error detector +==25407== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25407== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25407== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellDataMaps -malloc_debug -malloc_dump -memory_info +==25407== Parent PID: 24036 +==25407== +==25407== +==25407== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25407== Open file descriptor 12: +==25407== at 0xED9D07D: pipe (pipe.c:29) +==25407== by 0x196AC07D: ??? +==25407== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25407== by 0xE9EC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25407== by 0xE985D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25407== by 0xD659D38: PetscInitialize (pinit.c:924) +==25407== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25407== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25407== by 0x11C5E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25407== by 0x11792D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25407== by 0x11A1FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25407== by 0x11A09E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25407== by 0x11A735: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25407== by 0x115D55: main (TestCellDataMaps.cpp:19) +==25407== +==25407== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25407== at 0xEDA1A1C: __open_nocancel (open64_nocancel.c:39) +==25407== by 0xED25BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25407== by 0xE8E9822: ??? +==25407== by 0xE8E996F: ??? +==25407== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25407== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25407== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25407== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25407== by 0xE9EC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25407== by 0xE985D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25407== by 0xD659D38: PetscInitialize (pinit.c:924) +==25407== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25407== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25407== by 0x11C5E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25407== by 0x11792D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25407== by 0x11A1FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25407== by 0x11A09E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25407== by 0x11A735: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25407== by 0x115D55: main (TestCellDataMaps.cpp:19) +==25407== +==25407== Open file descriptor 113: +==25407== +==25407== +==25407== Open file descriptor 110: +==25407== +==25407== +==25407== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellDataMaps_valgrind.txt +==25407== +==25407== +==25407== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25407== +==25407== +==25407== +==25407== HEAP SUMMARY: +==25407== in use at exit: 618,478 bytes in 8,240 blocks +==25407== total heap usage: 53,648 allocs, 45,408 frees, 1,338,978,485 bytes allocated +==25407== +==25407== LEAK SUMMARY: +==25407== definitely lost: 0 bytes in 0 blocks +==25407== indirectly lost: 0 bytes in 0 blocks +==25407== possibly lost: 0 bytes in 0 blocks +==25407== still reachable: 184 bytes in 4 blocks +==25407== suppressed: 618,294 bytes in 8,236 blocks +==25407== Reachable blocks (those to which a pointer was found) are not shown. +==25407== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25407== +==25407== For lists of detected and suppressed errors, rerun with: -s +==25407== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellForCrypt_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellForCrypt_valgrind.txt new file mode 100644 index 000000000..a61c88b44 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40413== Memcheck, a memory error detector +==40413== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40413== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40413== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellForCrypt -malloc_debug -malloc_dump -memory_info +==40413== Parent PID: 24036 +==40413== +==40413== +==40413== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40413== Open file descriptor 12: +==40413== at 0xF45E07D: pipe (pipe.c:29) +==40413== by 0x1B36E07D: ??? +==40413== by 0x165804CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40413== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40413== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40413== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40413== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40413== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40413== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40413== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40413== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40413== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40413== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40413== by 0x118975: main (TestCellForCrypt.cpp:18) +==40413== +==40413== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40413== at 0xF462A1C: __open_nocancel (open64_nocancel.c:39) +==40413== by 0xF3E6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40413== by 0xED9C822: ??? +==40413== by 0xED9C96F: ??? +==40413== by 0x166256DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40413== by 0x16625938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40413== by 0x165DB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40413== by 0x165802DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40413== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40413== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40413== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40413== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40413== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40413== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40413== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40413== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40413== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40413== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40413== by 0x118975: main (TestCellForCrypt.cpp:18) +==40413== +==40413== Open file descriptor 113: +==40413== +==40413== +==40413== Open file descriptor 110: +==40413== +==40413== +==40413== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellForCrypt_valgrind.txt +==40413== +==40413== +==40413== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40413== +==40413== +==40413== +==40413== HEAP SUMMARY: +==40413== in use at exit: 618,494 bytes in 8,240 blocks +==40413== total heap usage: 55,769 allocs, 47,529 frees, 1,339,199,298 bytes allocated +==40413== +==40413== LEAK SUMMARY: +==40413== definitely lost: 0 bytes in 0 blocks +==40413== indirectly lost: 0 bytes in 0 blocks +==40413== possibly lost: 0 bytes in 0 blocks +==40413== still reachable: 184 bytes in 4 blocks +==40413== suppressed: 618,310 bytes in 8,236 blocks +==40413== Reachable blocks (those to which a pointer was found) are not shown. +==40413== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40413== +==40413== For lists of detected and suppressed errors, rerun with: -s +==40413== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellKillers_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellKillers_valgrind.txt new file mode 100644 index 000000000..c08371a81 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellKillers_valgrind.txt @@ -0,0 +1,73 @@ +==25889== Memcheck, a memory error detector +==25889== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25889== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25889== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellKillers -malloc_debug -malloc_dump -memory_info +==25889== Parent PID: 24036 +==25889== +==25889== +==25889== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25889== Open file descriptor 12: +==25889== at 0x10DD907D: pipe (pipe.c:29) +==25889== by 0x196AD07D: ??? +==25889== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25889== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25889== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25889== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25889== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25889== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25889== by 0x1A5341: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25889== by 0x19D239: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25889== by 0x1A087C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25889== by 0x1A071C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25889== by 0x1A0DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25889== by 0x19B655: main (TestCellKillers.cpp:19) +==25889== +==25889== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25889== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==25889== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25889== by 0xF137822: ??? +==25889== by 0xF13796F: ??? +==25889== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25889== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25889== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25889== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25889== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25889== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25889== by 0xF28AD38: PetscInitialize (pinit.c:924) +==25889== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25889== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25889== by 0x1A5341: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25889== by 0x19D239: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25889== by 0x1A087C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25889== by 0x1A071C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25889== by 0x1A0DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25889== by 0x19B655: main (TestCellKillers.cpp:19) +==25889== +==25889== Open file descriptor 113: +==25889== +==25889== +==25889== Open file descriptor 110: +==25889== +==25889== +==25889== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellKillers_valgrind.txt +==25889== +==25889== +==25889== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25889== +==25889== +==25889== +==25889== HEAP SUMMARY: +==25889== in use at exit: 618,350 bytes in 8,239 blocks +==25889== total heap usage: 119,758 allocs, 111,519 frees, 1,344,137,947 bytes allocated +==25889== +==25889== LEAK SUMMARY: +==25889== definitely lost: 0 bytes in 0 blocks +==25889== indirectly lost: 0 bytes in 0 blocks +==25889== possibly lost: 0 bytes in 0 blocks +==25889== still reachable: 56 bytes in 3 blocks +==25889== suppressed: 618,294 bytes in 8,236 blocks +==25889== Reachable blocks (those to which a pointer was found) are not shown. +==25889== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25889== +==25889== For lists of detected and suppressed errors, rerun with: -s +==25889== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellMutationStates_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellMutationStates_valgrind.txt new file mode 100644 index 000000000..1acede09d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellMutationStates_valgrind.txt @@ -0,0 +1,73 @@ +==25421== Memcheck, a memory error detector +==25421== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25421== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25421== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellMutationStates -malloc_debug -malloc_dump -memory_info +==25421== Parent PID: 24036 +==25421== +==25421== +==25421== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25421== Open file descriptor 12: +==25421== at 0xED5007D: pipe (pipe.c:29) +==25421== by 0x196AC07D: ??? +==25421== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25421== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25421== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25421== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25421== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25421== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25421== by 0x12BE69: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25421== by 0x126E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25421== by 0x129792: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25421== by 0x129632: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25421== by 0x129CC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25421== by 0x125225: main (TestCellMutationStates.cpp:19) +==25421== +==25421== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25421== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25421== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25421== by 0xD4DA822: ??? +==25421== by 0xD4DA96F: ??? +==25421== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25421== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25421== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25421== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25421== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25421== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25421== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25421== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25421== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25421== by 0x12BE69: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25421== by 0x126E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25421== by 0x129792: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25421== by 0x129632: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25421== by 0x129CC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25421== by 0x125225: main (TestCellMutationStates.cpp:19) +==25421== +==25421== Open file descriptor 113: +==25421== +==25421== +==25421== Open file descriptor 110: +==25421== +==25421== +==25421== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellMutationStates_valgrind.txt +==25421== +==25421== +==25421== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25421== +==25421== +==25421== +==25421== HEAP SUMMARY: +==25421== in use at exit: 618,350 bytes in 8,239 blocks +==25421== total heap usage: 53,166 allocs, 44,927 frees, 1,338,923,983 bytes allocated +==25421== +==25421== LEAK SUMMARY: +==25421== definitely lost: 0 bytes in 0 blocks +==25421== indirectly lost: 0 bytes in 0 blocks +==25421== possibly lost: 0 bytes in 0 blocks +==25421== still reachable: 56 bytes in 3 blocks +==25421== suppressed: 618,294 bytes in 8,236 blocks +==25421== Reachable blocks (those to which a pointer was found) are not shown. +==25421== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25421== +==25421== For lists of detected and suppressed errors, rerun with: -s +==25421== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellPopulationBoundaryConditions_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellPopulationBoundaryConditions_valgrind.txt new file mode 100644 index 000000000..7d65efde5 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellPopulationBoundaryConditions_valgrind.txt @@ -0,0 +1,73 @@ +==25902== Memcheck, a memory error detector +==25902== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25902== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25902== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationBoundaryConditions -malloc_debug -malloc_dump -memory_info +==25902== Parent PID: 24036 +==25902== +==25902== +==25902== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25902== Open file descriptor 12: +==25902== at 0xF92407D: pipe (pipe.c:29) +==25902== by 0x196AD07D: ??? +==25902== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25902== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25902== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25902== by 0x10210D38: PetscInitialize (pinit.c:924) +==25902== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25902== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25902== by 0x1550EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25902== by 0x14DBDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25902== by 0x150A32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25902== by 0x1508D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25902== by 0x150F69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25902== by 0x14C005: main (TestCellPopulationBoundaryConditions.cpp:19) +==25902== +==25902== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25902== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==25902== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25902== by 0xF137822: ??? +==25902== by 0xF13796F: ??? +==25902== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25902== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25902== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25902== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25902== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25902== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25902== by 0x10210D38: PetscInitialize (pinit.c:924) +==25902== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25902== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25902== by 0x1550EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25902== by 0x14DBDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25902== by 0x150A32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25902== by 0x1508D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25902== by 0x150F69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25902== by 0x14C005: main (TestCellPopulationBoundaryConditions.cpp:19) +==25902== +==25902== Open file descriptor 113: +==25902== +==25902== +==25902== Open file descriptor 110: +==25902== +==25902== +==25902== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationBoundaryConditions_valgrind.txt +==25902== +==25902== +==25902== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25902== +==25902== +==25902== +==25902== HEAP SUMMARY: +==25902== in use at exit: 618,350 bytes in 8,239 blocks +==25902== total heap usage: 70,298 allocs, 62,059 frees, 1,342,462,324 bytes allocated +==25902== +==25902== LEAK SUMMARY: +==25902== definitely lost: 0 bytes in 0 blocks +==25902== indirectly lost: 0 bytes in 0 blocks +==25902== possibly lost: 0 bytes in 0 blocks +==25902== still reachable: 56 bytes in 3 blocks +==25902== suppressed: 618,294 bytes in 8,236 blocks +==25902== Reachable blocks (those to which a pointer was found) are not shown. +==25902== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25902== +==25902== For lists of detected and suppressed errors, rerun with: -s +==25902== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellPopulationCountWriters_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellPopulationCountWriters_valgrind.txt new file mode 100644 index 000000000..feba92496 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellPopulationCountWriters_valgrind.txt @@ -0,0 +1,73 @@ +==25905== Memcheck, a memory error detector +==25905== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25905== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25905== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationCountWriters -malloc_debug -malloc_dump -memory_info +==25905== Parent PID: 24036 +==25905== +==25905== +==25905== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25905== Open file descriptor 12: +==25905== at 0xF83B07D: pipe (pipe.c:29) +==25905== by 0x196AD07D: ??? +==25905== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25905== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25905== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25905== by 0x10127D38: PetscInitialize (pinit.c:924) +==25905== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25905== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25905== by 0x137BD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25905== by 0x130FA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25905== by 0x133996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25905== by 0x133891: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25905== by 0x133EA5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25905== by 0x12F7A5: main (TestCellPopulationCountWriters.cpp:18) +==25905== +==25905== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25905== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==25905== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25905== by 0xF137822: ??? +==25905== by 0xF13796F: ??? +==25905== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25905== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25905== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25905== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25905== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25905== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25905== by 0x10127D38: PetscInitialize (pinit.c:924) +==25905== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25905== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25905== by 0x137BD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25905== by 0x130FA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25905== by 0x133996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25905== by 0x133891: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25905== by 0x133EA5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25905== by 0x12F7A5: main (TestCellPopulationCountWriters.cpp:18) +==25905== +==25905== Open file descriptor 113: +==25905== +==25905== +==25905== Open file descriptor 110: +==25905== +==25905== +==25905== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationCountWriters_valgrind.txt +==25905== +==25905== +==25905== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25905== +==25905== +==25905== +==25905== HEAP SUMMARY: +==25905== in use at exit: 618,350 bytes in 8,239 blocks +==25905== total heap usage: 57,820 allocs, 49,581 frees, 1,346,111,103 bytes allocated +==25905== +==25905== LEAK SUMMARY: +==25905== definitely lost: 0 bytes in 0 blocks +==25905== indirectly lost: 0 bytes in 0 blocks +==25905== possibly lost: 0 bytes in 0 blocks +==25905== still reachable: 56 bytes in 3 blocks +==25905== suppressed: 618,294 bytes in 8,236 blocks +==25905== Reachable blocks (those to which a pointer was found) are not shown. +==25905== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25905== +==25905== For lists of detected and suppressed errors, rerun with: -s +==25905== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellPopulationEventWriters_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellPopulationEventWriters_valgrind.txt new file mode 100644 index 000000000..b8ec067fe --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellPopulationEventWriters_valgrind.txt @@ -0,0 +1,73 @@ +==25912== Memcheck, a memory error detector +==25912== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25912== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25912== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationEventWriters -malloc_debug -malloc_dump -memory_info +==25912== Parent PID: 24036 +==25912== +==25912== +==25912== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25912== Open file descriptor 12: +==25912== at 0xF83B07D: pipe (pipe.c:29) +==25912== by 0x196AD07D: ??? +==25912== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25912== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25912== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25912== by 0x10127D38: PetscInitialize (pinit.c:924) +==25912== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25912== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25912== by 0x13559C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25912== by 0x12E53D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25912== by 0x130F8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25912== by 0x130E2C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25912== by 0x1314C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25912== by 0x12C965: main (TestCellPopulationEventWriters.cpp:19) +==25912== +==25912== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25912== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==25912== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25912== by 0xF137822: ??? +==25912== by 0xF13796F: ??? +==25912== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25912== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25912== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25912== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25912== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25912== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25912== by 0x10127D38: PetscInitialize (pinit.c:924) +==25912== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25912== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25912== by 0x13559C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25912== by 0x12E53D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25912== by 0x130F8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25912== by 0x130E2C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25912== by 0x1314C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25912== by 0x12C965: main (TestCellPopulationEventWriters.cpp:19) +==25912== +==25912== Open file descriptor 113: +==25912== +==25912== +==25912== Open file descriptor 110: +==25912== +==25912== +==25912== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationEventWriters_valgrind.txt +==25912== +==25912== +==25912== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25912== +==25912== +==25912== +==25912== HEAP SUMMARY: +==25912== in use at exit: 618,350 bytes in 8,239 blocks +==25912== total heap usage: 69,864 allocs, 61,625 frees, 1,350,932,926 bytes allocated +==25912== +==25912== LEAK SUMMARY: +==25912== definitely lost: 0 bytes in 0 blocks +==25912== indirectly lost: 0 bytes in 0 blocks +==25912== possibly lost: 0 bytes in 0 blocks +==25912== still reachable: 56 bytes in 3 blocks +==25912== suppressed: 618,294 bytes in 8,236 blocks +==25912== Reachable blocks (those to which a pointer was found) are not shown. +==25912== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25912== +==25912== For lists of detected and suppressed errors, rerun with: -s +==25912== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellPopulationWriters_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellPopulationWriters_valgrind.txt new file mode 100644 index 000000000..9775545d7 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellPopulationWriters_valgrind.txt @@ -0,0 +1,73 @@ +==25926== Memcheck, a memory error detector +==25926== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25926== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25926== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationWriters -malloc_debug -malloc_dump -memory_info +==25926== Parent PID: 24036 +==25926== +==25926== +==25926== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25926== Open file descriptor 12: +==25926== at 0xF83B07D: pipe (pipe.c:29) +==25926== by 0x196AD07D: ??? +==25926== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25926== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25926== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25926== by 0x10127D38: PetscInitialize (pinit.c:924) +==25926== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25926== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25926== by 0x146C30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25926== by 0x13F5FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25926== by 0x14252E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25926== by 0x1423CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25926== by 0x142A65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25926== by 0x13DA25: main (TestCellPopulationWriters.cpp:19) +==25926== +==25926== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25926== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==25926== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25926== by 0xF137822: ??? +==25926== by 0xF13796F: ??? +==25926== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25926== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25926== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25926== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25926== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25926== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25926== by 0x10127D38: PetscInitialize (pinit.c:924) +==25926== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25926== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25926== by 0x146C30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25926== by 0x13F5FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25926== by 0x14252E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25926== by 0x1423CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25926== by 0x142A65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25926== by 0x13DA25: main (TestCellPopulationWriters.cpp:19) +==25926== +==25926== Open file descriptor 113: +==25926== +==25926== +==25926== Open file descriptor 110: +==25926== +==25926== +==25926== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationWriters_valgrind.txt +==25926== +==25926== +==25926== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25926== +==25926== +==25926== +==25926== HEAP SUMMARY: +==25926== in use at exit: 618,350 bytes in 8,239 blocks +==25926== total heap usage: 157,622 allocs, 149,383 frees, 1,399,027,806 bytes allocated +==25926== +==25926== LEAK SUMMARY: +==25926== definitely lost: 0 bytes in 0 blocks +==25926== indirectly lost: 0 bytes in 0 blocks +==25926== possibly lost: 0 bytes in 0 blocks +==25926== still reachable: 56 bytes in 3 blocks +==25926== suppressed: 618,294 bytes in 8,236 blocks +==25926== Reachable blocks (those to which a pointer was found) are not shown. +==25926== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25926== +==25926== For lists of detected and suppressed errors, rerun with: -s +==25926== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellProliferativeTypes_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellProliferativeTypes_valgrind.txt new file mode 100644 index 000000000..a3bd8a2f8 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellProliferativeTypes_valgrind.txt @@ -0,0 +1,73 @@ +==25430== Memcheck, a memory error detector +==25430== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25430== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25430== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellProliferativeTypes -malloc_debug -malloc_dump -memory_info +==25430== Parent PID: 24036 +==25430== +==25430== +==25430== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25430== Open file descriptor 12: +==25430== at 0xED5007D: pipe (pipe.c:29) +==25430== by 0x196AC07D: ??? +==25430== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25430== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25430== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25430== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25430== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25430== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25430== by 0x12CF1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25430== by 0x127E29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25430== by 0x12A848: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25430== by 0x12A6E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25430== by 0x12AD7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25430== by 0x126245: main (TestCellProliferativeTypes.cpp:19) +==25430== +==25430== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25430== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25430== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25430== by 0xD4DA822: ??? +==25430== by 0xD4DA96F: ??? +==25430== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25430== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25430== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25430== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25430== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25430== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25430== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25430== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25430== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25430== by 0x12CF1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25430== by 0x127E29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25430== by 0x12A848: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25430== by 0x12A6E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25430== by 0x12AD7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25430== by 0x126245: main (TestCellProliferativeTypes.cpp:19) +==25430== +==25430== Open file descriptor 113: +==25430== +==25430== +==25430== Open file descriptor 110: +==25430== +==25430== +==25430== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellProliferativeTypes_valgrind.txt +==25430== +==25430== +==25430== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25430== +==25430== +==25430== +==25430== HEAP SUMMARY: +==25430== in use at exit: 618,350 bytes in 8,239 blocks +==25430== total heap usage: 53,388 allocs, 45,149 frees, 1,339,006,344 bytes allocated +==25430== +==25430== LEAK SUMMARY: +==25430== definitely lost: 0 bytes in 0 blocks +==25430== indirectly lost: 0 bytes in 0 blocks +==25430== possibly lost: 0 bytes in 0 blocks +==25430== still reachable: 56 bytes in 3 blocks +==25430== suppressed: 618,294 bytes in 8,236 blocks +==25430== Reachable blocks (those to which a pointer was found) are not shown. +==25430== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25430== +==25430== For lists of detected and suppressed errors, rerun with: -s +==25430== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellProperties_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellProperties_valgrind.txt new file mode 100644 index 000000000..83e187c60 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellProperties_valgrind.txt @@ -0,0 +1,73 @@ +==43583== Memcheck, a memory error detector +==43583== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43583== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43583== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCellProperties -malloc_debug -malloc_dump -memory_info +==43583== Parent PID: 24036 +==43583== +==43583== +==43583== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43583== Open file descriptor 12: +==43583== at 0x882107D: pipe (pipe.c:29) +==43583== by 0x1432407D: ??? +==43583== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43583== by 0x9F1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43583== by 0x9EB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43583== by 0x8BACD38: PetscInitialize (pinit.c:924) +==43583== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43583== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43583== by 0x11C95A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43583== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43583== by 0x11A450: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43583== by 0x11A2F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43583== by 0x11A987: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43583== by 0x115CD5: main (TestCellProperties.cpp:19) +==43583== +==43583== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43583== at 0x8825A1C: __open_nocancel (open64_nocancel.c:39) +==43583== by 0x87A9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43583== by 0x848A822: ??? +==43583== by 0x848A96F: ??? +==43583== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43583== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43583== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43583== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43583== by 0x9F1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43583== by 0x9EB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43583== by 0x8BACD38: PetscInitialize (pinit.c:924) +==43583== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43583== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43583== by 0x11C95A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43583== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43583== by 0x11A450: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43583== by 0x11A2F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43583== by 0x11A987: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43583== by 0x115CD5: main (TestCellProperties.cpp:19) +==43583== +==43583== Open file descriptor 113: +==43583== +==43583== +==43583== Open file descriptor 110: +==43583== +==43583== +==43583== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellProperties_valgrind.txt +==43583== +==43583== +==43583== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43583== +==43583== +==43583== +==43583== HEAP SUMMARY: +==43583== in use at exit: 618,263 bytes in 8,234 blocks +==43583== total heap usage: 1,086,635 allocs, 1,078,401 frees, 1,460,646,422 bytes allocated +==43583== +==43583== LEAK SUMMARY: +==43583== definitely lost: 0 bytes in 0 blocks +==43583== indirectly lost: 0 bytes in 0 blocks +==43583== possibly lost: 0 bytes in 0 blocks +==43583== still reachable: 24 bytes in 2 blocks +==43583== suppressed: 618,239 bytes in 8,232 blocks +==43583== Reachable blocks (those to which a pointer was found) are not shown. +==43583== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43583== +==43583== For lists of detected and suppressed errors, rerun with: -s +==43583== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestCellPropertyCollection_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellPropertyCollection_valgrind.txt new file mode 100644 index 000000000..cc148e6d3 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellPropertyCollection_valgrind.txt @@ -0,0 +1,73 @@ +==25433== Memcheck, a memory error detector +==25433== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25433== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25433== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPropertyCollection -malloc_debug -malloc_dump -memory_info +==25433== Parent PID: 24036 +==25433== +==25433== +==25433== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25433== Open file descriptor 12: +==25433== at 0xED5007D: pipe (pipe.c:29) +==25433== by 0x196AC07D: ??? +==25433== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25433== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25433== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25433== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25433== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25433== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25433== by 0x1546B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25433== by 0x14F129: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25433== by 0x151D20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25433== by 0x151BC0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25433== by 0x152257: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25433== by 0x14D545: main (TestCellPropertyCollection.cpp:19) +==25433== +==25433== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25433== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25433== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25433== by 0xD4DA822: ??? +==25433== by 0xD4DA96F: ??? +==25433== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25433== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25433== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25433== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25433== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25433== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25433== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25433== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25433== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25433== by 0x1546B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25433== by 0x14F129: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25433== by 0x151D20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25433== by 0x151BC0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25433== by 0x152257: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25433== by 0x14D545: main (TestCellPropertyCollection.cpp:19) +==25433== +==25433== Open file descriptor 113: +==25433== +==25433== +==25433== Open file descriptor 110: +==25433== +==25433== +==25433== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPropertyCollection_valgrind.txt +==25433== +==25433== +==25433== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25433== +==25433== +==25433== +==25433== HEAP SUMMARY: +==25433== in use at exit: 618,350 bytes in 8,239 blocks +==25433== total heap usage: 53,256 allocs, 45,017 frees, 1,338,931,324 bytes allocated +==25433== +==25433== LEAK SUMMARY: +==25433== definitely lost: 0 bytes in 0 blocks +==25433== indirectly lost: 0 bytes in 0 blocks +==25433== possibly lost: 0 bytes in 0 blocks +==25433== still reachable: 56 bytes in 3 blocks +==25433== suppressed: 618,294 bytes in 8,236 blocks +==25433== Reachable blocks (those to which a pointer was found) are not shown. +==25433== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25433== +==25433== For lists of detected and suppressed errors, rerun with: -s +==25433== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellPropertyRegistry_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellPropertyRegistry_valgrind.txt new file mode 100644 index 000000000..fcb2db8ba --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellPropertyRegistry_valgrind.txt @@ -0,0 +1,73 @@ +==25442== Memcheck, a memory error detector +==25442== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25442== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25442== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPropertyRegistry -malloc_debug -malloc_dump -memory_info +==25442== Parent PID: 24036 +==25442== +==25442== +==25442== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25442== Open file descriptor 12: +==25442== at 0xED5007D: pipe (pipe.c:29) +==25442== by 0x196AC07D: ??? +==25442== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25442== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25442== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25442== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25442== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25442== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25442== by 0x15B69D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25442== by 0x156089: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25442== by 0x158D4C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25442== by 0x158BEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25442== by 0x159283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25442== by 0x1544A5: main (TestCellPropertyRegistry.cpp:19) +==25442== +==25442== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25442== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25442== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25442== by 0xD4DA822: ??? +==25442== by 0xD4DA96F: ??? +==25442== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25442== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25442== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25442== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25442== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25442== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25442== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25442== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25442== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25442== by 0x15B69D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25442== by 0x156089: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25442== by 0x158D4C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25442== by 0x158BEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25442== by 0x159283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25442== by 0x1544A5: main (TestCellPropertyRegistry.cpp:19) +==25442== +==25442== Open file descriptor 113: +==25442== +==25442== +==25442== Open file descriptor 110: +==25442== +==25442== +==25442== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPropertyRegistry_valgrind.txt +==25442== +==25442== +==25442== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25442== +==25442== +==25442== +==25442== HEAP SUMMARY: +==25442== in use at exit: 618,350 bytes in 8,239 blocks +==25442== total heap usage: 53,293 allocs, 45,054 frees, 1,338,959,771 bytes allocated +==25442== +==25442== LEAK SUMMARY: +==25442== definitely lost: 0 bytes in 0 blocks +==25442== indirectly lost: 0 bytes in 0 blocks +==25442== possibly lost: 0 bytes in 0 blocks +==25442== still reachable: 56 bytes in 3 blocks +==25442== suppressed: 618,294 bytes in 8,236 blocks +==25442== Reachable blocks (those to which a pointer was found) are not shown. +==25442== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25442== +==25442== For lists of detected and suppressed errors, rerun with: -s +==25442== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellSrn_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellSrn_valgrind.txt new file mode 100644 index 000000000..7cd6e2bc1 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellSrn_valgrind.txt @@ -0,0 +1,73 @@ +==25384== Memcheck, a memory error detector +==25384== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25384== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25384== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellSrn -malloc_debug -malloc_dump -memory_info +==25384== Parent PID: 24036 +==25384== +==25384== +==25384== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25384== Open file descriptor 12: +==25384== at 0xED0E07D: pipe (pipe.c:29) +==25384== by 0x196AC07D: ??? +==25384== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25384== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25384== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25384== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25384== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25384== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25384== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25384== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25384== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25384== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25384== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25384== by 0x113935: main (TestCellSrn.cpp:18) +==25384== +==25384== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25384== at 0xED12A1C: __open_nocancel (open64_nocancel.c:39) +==25384== by 0xEC96BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25384== by 0xE85A822: ??? +==25384== by 0xE85A96F: ??? +==25384== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25384== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25384== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25384== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25384== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25384== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25384== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25384== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25384== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25384== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25384== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25384== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25384== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25384== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25384== by 0x113935: main (TestCellSrn.cpp:18) +==25384== +==25384== Open file descriptor 113: +==25384== +==25384== +==25384== Open file descriptor 110: +==25384== +==25384== +==25384== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellSrn_valgrind.txt +==25384== +==25384== +==25384== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25384== +==25384== +==25384== +==25384== HEAP SUMMARY: +==25384== in use at exit: 618,414 bytes in 8,240 blocks +==25384== total heap usage: 63,351 allocs, 55,111 frees, 1,339,389,450 bytes allocated +==25384== +==25384== LEAK SUMMARY: +==25384== definitely lost: 0 bytes in 0 blocks +==25384== indirectly lost: 0 bytes in 0 blocks +==25384== possibly lost: 0 bytes in 0 blocks +==25384== still reachable: 120 bytes in 4 blocks +==25384== suppressed: 618,294 bytes in 8,236 blocks +==25384== Reachable blocks (those to which a pointer was found) are not shown. +==25384== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25384== +==25384== For lists of detected and suppressed errors, rerun with: -s +==25384== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellWriters_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellWriters_valgrind.txt new file mode 100644 index 000000000..168822fd5 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellWriters_valgrind.txt @@ -0,0 +1,73 @@ +==26002== Memcheck, a memory error detector +==26002== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26002== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26002== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellWriters -malloc_debug -malloc_dump -memory_info +==26002== Parent PID: 24036 +==26002== +==26002== +==26002== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26002== Open file descriptor 12: +==26002== at 0xFB0E07D: pipe (pipe.c:29) +==26002== by 0x196AD07D: ??? +==26002== by 0x14CB94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26002== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26002== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26002== by 0x10127D38: PetscInitialize (pinit.c:924) +==26002== by 0xF3CD1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26002== by 0xF3CD227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26002== by 0x144A2A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26002== by 0x13CE5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26002== by 0x14024C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26002== by 0x1400EC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26002== by 0x140783: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26002== by 0x13B285: main (TestCellWriters.cpp:19) +==26002== +==26002== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26002== at 0xFB12A1C: __open_nocancel (open64_nocancel.c:39) +==26002== by 0xFA96BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26002== by 0xF408822: ??? +==26002== by 0xF40896F: ??? +==26002== by 0x14D5E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26002== by 0x14D5E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26002== by 0x14D14922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26002== by 0x14CB92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26002== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26002== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26002== by 0x10127D38: PetscInitialize (pinit.c:924) +==26002== by 0xF3CD1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26002== by 0xF3CD227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26002== by 0x144A2A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26002== by 0x13CE5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26002== by 0x14024C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26002== by 0x1400EC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26002== by 0x140783: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26002== by 0x13B285: main (TestCellWriters.cpp:19) +==26002== +==26002== Open file descriptor 113: +==26002== +==26002== +==26002== Open file descriptor 110: +==26002== +==26002== +==26002== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellWriters_valgrind.txt +==26002== +==26002== +==26002== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26002== +==26002== +==26002== +==26002== HEAP SUMMARY: +==26002== in use at exit: 618,350 bytes in 8,239 blocks +==26002== total heap usage: 69,782 allocs, 61,543 frees, 1,342,420,352 bytes allocated +==26002== +==26002== LEAK SUMMARY: +==26002== definitely lost: 0 bytes in 0 blocks +==26002== indirectly lost: 0 bytes in 0 blocks +==26002== possibly lost: 0 bytes in 0 blocks +==26002== still reachable: 56 bytes in 3 blocks +==26002== suppressed: 618,294 bytes in 8,236 blocks +==26002== Reachable blocks (those to which a pointer was found) are not shown. +==26002== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26002== +==26002== For lists of detected and suppressed errors, rerun with: -s +==26002== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCell_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCell_valgrind.txt new file mode 100644 index 000000000..187fb6176 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCell_valgrind.txt @@ -0,0 +1,73 @@ +==25373== Memcheck, a memory error detector +==25373== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25373== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25373== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCell -malloc_debug -malloc_dump -memory_info +==25373== Parent PID: 24036 +==25373== +==25373== +==25373== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25373== Open file descriptor 12: +==25373== at 0xED0E07D: pipe (pipe.c:29) +==25373== by 0x196AC07D: ??? +==25373== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25373== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25373== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25373== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25373== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25373== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25373== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25373== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25373== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25373== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25373== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25373== by 0x1222F5: main (TestCell.cpp:19) +==25373== +==25373== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25373== at 0xED12A1C: __open_nocancel (open64_nocancel.c:39) +==25373== by 0xEC96BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25373== by 0xE85A822: ??? +==25373== by 0xE85A96F: ??? +==25373== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25373== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25373== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25373== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25373== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25373== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25373== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25373== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25373== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25373== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25373== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25373== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25373== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25373== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25373== by 0x1222F5: main (TestCell.cpp:19) +==25373== +==25373== Open file descriptor 113: +==25373== +==25373== +==25373== Open file descriptor 110: +==25373== +==25373== +==25373== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCell_valgrind.txt +==25373== +==25373== +==25373== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25373== +==25373== +==25373== +==25373== HEAP SUMMARY: +==25373== in use at exit: 618,407 bytes in 8,236 blocks +==25373== total heap usage: 5,183,521 allocs, 5,175,285 frees, 1,819,191,032 bytes allocated +==25373== +==25373== LEAK SUMMARY: +==25373== definitely lost: 0 bytes in 0 blocks +==25373== indirectly lost: 0 bytes in 0 blocks +==25373== possibly lost: 0 bytes in 0 blocks +==25373== still reachable: 184 bytes in 4 blocks +==25373== suppressed: 618,223 bytes in 8,232 blocks +==25373== Reachable blocks (those to which a pointer was found) are not shown. +==25373== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25373== +==25373== For lists of detected and suppressed errors, rerun with: -s +==25373== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestCellsGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellsGenerator_valgrind.txt new file mode 100644 index 000000000..952eae01f --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==25456== Memcheck, a memory error detector +==25456== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25456== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25456== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellsGenerator -malloc_debug -malloc_dump -memory_info +==25456== Parent PID: 24036 +==25456== +==25456== +==25456== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25456== Open file descriptor 12: +==25456== at 0xF7F907D: pipe (pipe.c:29) +==25456== by 0x196AD07D: ??? +==25456== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25456== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25456== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25456== by 0x10127D38: PetscInitialize (pinit.c:924) +==25456== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25456== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25456== by 0x1248EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25456== by 0x11F90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25456== by 0x122428: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25456== by 0x1222C8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25456== by 0x12295F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25456== by 0x11DD35: main (TestCellsGenerator.cpp:19) +==25456== +==25456== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25456== at 0xF7FDA1C: __open_nocancel (open64_nocancel.c:39) +==25456== by 0xF781BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25456== by 0xF137822: ??? +==25456== by 0xF13796F: ??? +==25456== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25456== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25456== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25456== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25456== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25456== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25456== by 0x10127D38: PetscInitialize (pinit.c:924) +==25456== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25456== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25456== by 0x1248EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25456== by 0x11F90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25456== by 0x122428: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25456== by 0x1222C8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25456== by 0x12295F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25456== by 0x11DD35: main (TestCellsGenerator.cpp:19) +==25456== +==25456== Open file descriptor 113: +==25456== +==25456== +==25456== Open file descriptor 110: +==25456== +==25456== +==25456== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellsGenerator_valgrind.txt +==25456== +==25456== +==25456== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25456== +==25456== +==25456== +==25456== HEAP SUMMARY: +==25456== in use at exit: 618,414 bytes in 8,240 blocks +==25456== total heap usage: 69,419 allocs, 61,179 frees, 1,340,699,206 bytes allocated +==25456== +==25456== LEAK SUMMARY: +==25456== definitely lost: 0 bytes in 0 blocks +==25456== indirectly lost: 0 bytes in 0 blocks +==25456== possibly lost: 0 bytes in 0 blocks +==25456== still reachable: 120 bytes in 4 blocks +==25456== suppressed: 618,294 bytes in 8,236 blocks +==25456== Reachable blocks (those to which a pointer was found) are not shown. +==25456== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25456== +==25456== For lists of detected and suppressed errors, rerun with: -s +==25456== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCellwiseDataGradient_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCellwiseDataGradient_valgrind.txt new file mode 100644 index 000000000..e66c7c52b --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCellwiseDataGradient_valgrind.txt @@ -0,0 +1,73 @@ +==25927== Memcheck, a memory error detector +==25927== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25927== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25927== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellwiseDataGradient -malloc_debug -malloc_dump -memory_info +==25927== Parent PID: 24036 +==25927== +==25927== +==25927== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25927== Open file descriptor 12: +==25927== at 0xF7F907D: pipe (pipe.c:29) +==25927== by 0x196AD07D: ??? +==25927== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25927== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25927== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25927== by 0x10127D38: PetscInitialize (pinit.c:924) +==25927== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25927== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25927== by 0x11DD52: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25927== by 0x119493: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25927== by 0x11B86C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25927== by 0x11B767: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25927== by 0x11BD7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25927== by 0x117C95: main (TestCellwiseDataGradient.cpp:18) +==25927== +==25927== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25927== at 0xF7FDA1C: __open_nocancel (open64_nocancel.c:39) +==25927== by 0xF781BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25927== by 0xF137822: ??? +==25927== by 0xF13796F: ??? +==25927== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25927== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25927== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25927== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25927== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25927== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25927== by 0x10127D38: PetscInitialize (pinit.c:924) +==25927== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25927== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25927== by 0x11DD52: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25927== by 0x119493: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25927== by 0x11B86C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25927== by 0x11B767: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25927== by 0x11BD7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25927== by 0x117C95: main (TestCellwiseDataGradient.cpp:18) +==25927== +==25927== Open file descriptor 113: +==25927== +==25927== +==25927== Open file descriptor 110: +==25927== +==25927== +==25927== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellwiseDataGradient_valgrind.txt +==25927== +==25927== +==25927== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25927== +==25927== +==25927== +==25927== HEAP SUMMARY: +==25927== in use at exit: 618,350 bytes in 8,239 blocks +==25927== total heap usage: 418,858 allocs, 410,619 frees, 1,353,657,127 bytes allocated +==25927== +==25927== LEAK SUMMARY: +==25927== definitely lost: 0 bytes in 0 blocks +==25927== indirectly lost: 0 bytes in 0 blocks +==25927== possibly lost: 0 bytes in 0 blocks +==25927== still reachable: 56 bytes in 3 blocks +==25927== suppressed: 618,294 bytes in 8,236 blocks +==25927== Reachable blocks (those to which a pointer was found) are not shown. +==25927== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25927== +==25927== For lists of detected and suppressed errors, rerun with: -s +==25927== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCentreBasedDivisionRules_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCentreBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..b182481a8 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCentreBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==26025== Memcheck, a memory error detector +==26025== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26025== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26025== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCentreBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==26025== Parent PID: 24036 +==26025== +==26025== +==26025== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26025== Open file descriptor 12: +==26025== at 0x10DD907D: pipe (pipe.c:29) +==26025== by 0x196AD07D: ??? +==26025== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26025== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26025== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26025== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26025== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26025== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26025== by 0x140B79: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26025== by 0x13BAA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26025== by 0x13E124: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26025== by 0x13E020: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26025== by 0x13E633: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26025== by 0x13A2A5: main (TestCentreBasedDivisionRules.cpp:18) +==26025== +==26025== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26025== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==26025== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26025== by 0xF137822: ??? +==26025== by 0xF13796F: ??? +==26025== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26025== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26025== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26025== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26025== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26025== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26025== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26025== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26025== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26025== by 0x140B79: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26025== by 0x13BAA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26025== by 0x13E124: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26025== by 0x13E020: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26025== by 0x13E633: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26025== by 0x13A2A5: main (TestCentreBasedDivisionRules.cpp:18) +==26025== +==26025== Open file descriptor 113: +==26025== +==26025== +==26025== Open file descriptor 110: +==26025== +==26025== +==26025== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCentreBasedDivisionRules_valgrind.txt +==26025== +==26025== +==26025== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26025== +==26025== +==26025== +==26025== HEAP SUMMARY: +==26025== in use at exit: 618,350 bytes in 8,239 blocks +==26025== total heap usage: 58,547 allocs, 50,308 frees, 1,339,872,322 bytes allocated +==26025== +==26025== LEAK SUMMARY: +==26025== definitely lost: 0 bytes in 0 blocks +==26025== indirectly lost: 0 bytes in 0 blocks +==26025== possibly lost: 0 bytes in 0 blocks +==26025== still reachable: 56 bytes in 3 blocks +==26025== suppressed: 618,294 bytes in 8,236 blocks +==26025== Reachable blocks (those to which a pointer was found) are not shown. +==26025== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26025== +==26025== For lists of detected and suppressed errors, rerun with: -s +==26025== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestChasteBuildInfo_valgrind.txt b/log-files/2024-09-20_21-41-09/TestChasteBuildInfo_valgrind.txt new file mode 100644 index 000000000..aef00224c --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestChasteBuildInfo_valgrind.txt @@ -0,0 +1,73 @@ +==24066== Memcheck, a memory error detector +==24066== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24066== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24066== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestChasteBuildInfo -malloc_debug -malloc_dump -memory_info +==24066== Parent PID: 24036 +==24066== +==24066== +==24066== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24066== Open file descriptor 12: +==24066== at 0x616907D: pipe (pipe.c:29) +==24066== by 0xAEA507D: ??? +==24066== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24066== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24066== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24066== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24066== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24066== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24066== by 0x111D89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24066== by 0x10DC93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24066== by 0x10FE44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24066== by 0x10FD40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24066== by 0x110353: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24066== by 0x10C495: main (TestChasteBuildInfo.cpp:18) +==24066== +==24066== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24066== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24066== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24066== by 0x5CB3822: ??? +==24066== by 0x5CB396F: ??? +==24066== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24066== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24066== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24066== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24066== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24066== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24066== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24066== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24066== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24066== by 0x111D89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24066== by 0x10DC93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24066== by 0x10FE44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24066== by 0x10FD40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24066== by 0x110353: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24066== by 0x10C495: main (TestChasteBuildInfo.cpp:18) +==24066== +==24066== Open file descriptor 113: +==24066== +==24066== +==24066== Open file descriptor 110: +==24066== +==24066== +==24066== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChasteBuildInfo_valgrind.txt +==24066== +==24066== +==24066== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24066== +==24066== +==24066== +==24066== HEAP SUMMARY: +==24066== in use at exit: 617,838 bytes in 8,238 blocks +==24066== total heap usage: 44,925 allocs, 36,687 frees, 1,338,164,982 bytes allocated +==24066== +==24066== LEAK SUMMARY: +==24066== definitely lost: 0 bytes in 0 blocks +==24066== indirectly lost: 0 bytes in 0 blocks +==24066== possibly lost: 0 bytes in 0 blocks +==24066== still reachable: 24 bytes in 2 blocks +==24066== suppressed: 617,814 bytes in 8,236 blocks +==24066== Reachable blocks (those to which a pointer was found) are not shown. +==24066== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24066== +==24066== For lists of detected and suppressed errors, rerun with: -s +==24066== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestChastePoint_valgrind.txt b/log-files/2024-09-20_21-41-09/TestChastePoint_valgrind.txt new file mode 100644 index 000000000..fef703a68 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestChastePoint_valgrind.txt @@ -0,0 +1,73 @@ +==24408== Memcheck, a memory error detector +==24408== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24408== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24408== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestChastePoint -malloc_debug -malloc_dump -memory_info +==24408== Parent PID: 24036 +==24408== +==24408== +==24408== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24408== Open file descriptor 12: +==24408== at 0x7E0607D: pipe (pipe.c:29) +==24408== by 0x100C307D: ??? +==24408== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24408== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24408== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24408== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24408== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24408== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24408== by 0x1434C7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24408== by 0x13DFC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24408== by 0x140D84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24408== by 0x140C24: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24408== by 0x1412BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24408== by 0x13C3E5: main (TestChastePoint.cpp:19) +==24408== +==24408== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24408== at 0x7E0AA1C: __open_nocancel (open64_nocancel.c:39) +==24408== by 0x7D8EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24408== by 0x6590822: ??? +==24408== by 0x659096F: ??? +==24408== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24408== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24408== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24408== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24408== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24408== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24408== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24408== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24408== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24408== by 0x1434C7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24408== by 0x13DFC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24408== by 0x140D84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24408== by 0x140C24: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24408== by 0x1412BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24408== by 0x13C3E5: main (TestChastePoint.cpp:19) +==24408== +==24408== Open file descriptor 113: +==24408== +==24408== +==24408== Open file descriptor 110: +==24408== +==24408== +==24408== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChastePoint_valgrind.txt +==24408== +==24408== +==24408== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24408== +==24408== +==24408== +==24408== HEAP SUMMARY: +==24408== in use at exit: 618,222 bytes in 8,238 blocks +==24408== total heap usage: 47,414 allocs, 39,176 frees, 1,338,408,383 bytes allocated +==24408== +==24408== LEAK SUMMARY: +==24408== definitely lost: 0 bytes in 0 blocks +==24408== indirectly lost: 0 bytes in 0 blocks +==24408== possibly lost: 0 bytes in 0 blocks +==24408== still reachable: 24 bytes in 2 blocks +==24408== suppressed: 618,198 bytes in 8,236 blocks +==24408== Reachable blocks (those to which a pointer was found) are not shown. +==24408== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24408== +==24408== For lists of detected and suppressed errors, rerun with: -s +==24408== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestChasteRegions_valgrind.txt b/log-files/2024-09-20_21-41-09/TestChasteRegions_valgrind.txt new file mode 100644 index 000000000..0b4316ec6 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestChasteRegions_valgrind.txt @@ -0,0 +1,73 @@ +==24409== Memcheck, a memory error detector +==24409== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24409== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24409== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestChasteRegions -malloc_debug -malloc_dump -memory_info +==24409== Parent PID: 24036 +==24409== +==24409== +==24409== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24409== Open file descriptor 12: +==24409== at 0x6A3807D: pipe (pipe.c:29) +==24409== by 0x100C307D: ??? +==24409== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24409== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24409== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24409== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==24409== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24409== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24409== by 0x127EAE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24409== by 0x122DBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24409== by 0x12589A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24409== by 0x12573A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24409== by 0x125DD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24409== by 0x1211E5: main (TestChasteRegions.cpp:19) +==24409== +==24409== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24409== at 0x6A3CA1C: __open_nocancel (open64_nocancel.c:39) +==24409== by 0x69C0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24409== by 0x6590822: ??? +==24409== by 0x659096F: ??? +==24409== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24409== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24409== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24409== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24409== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24409== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24409== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==24409== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24409== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24409== by 0x127EAE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24409== by 0x122DBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24409== by 0x12589A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24409== by 0x12573A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24409== by 0x125DD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24409== by 0x1211E5: main (TestChasteRegions.cpp:19) +==24409== +==24409== Open file descriptor 113: +==24409== +==24409== +==24409== Open file descriptor 110: +==24409== +==24409== +==24409== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChasteRegions_valgrind.txt +==24409== +==24409== +==24409== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24409== +==24409== +==24409== +==24409== HEAP SUMMARY: +==24409== in use at exit: 618,222 bytes in 8,238 blocks +==24409== total heap usage: 47,507 allocs, 39,269 frees, 1,338,414,906 bytes allocated +==24409== +==24409== LEAK SUMMARY: +==24409== definitely lost: 0 bytes in 0 blocks +==24409== indirectly lost: 0 bytes in 0 blocks +==24409== possibly lost: 0 bytes in 0 blocks +==24409== still reachable: 24 bytes in 2 blocks +==24409== suppressed: 618,198 bytes in 8,236 blocks +==24409== Reachable blocks (those to which a pointer was found) are not shown. +==24409== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24409== +==24409== For lists of detected and suppressed errors, rerun with: -s +==24409== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestChebyshevIteration_valgrind.txt b/log-files/2024-09-20_21-41-09/TestChebyshevIteration_valgrind.txt new file mode 100644 index 000000000..711e9cbe3 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestChebyshevIteration_valgrind.txt @@ -0,0 +1,73 @@ +==24336== Memcheck, a memory error detector +==24336== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24336== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24336== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestChebyshevIteration -malloc_debug -malloc_dump -memory_info +==24336== Parent PID: 24036 +==24336== +==24336== +==24336== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24336== Open file descriptor 12: +==24336== at 0x60C107D: pipe (pipe.c:29) +==24336== by 0xAF3907D: ??? +==24336== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24336== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24336== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24336== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24336== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24336== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24336== by 0x115156: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24336== by 0x11068D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24336== by 0x112F8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24336== by 0x112E2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24336== by 0x1134C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24336== by 0x10EAB5: main (TestChebyshevIteration.cpp:19) +==24336== +==24336== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24336== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24336== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24336== by 0x5D42822: ??? +==24336== by 0x5D4296F: ??? +==24336== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24336== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24336== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24336== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24336== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24336== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24336== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24336== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24336== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24336== by 0x115156: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24336== by 0x11068D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24336== by 0x112F8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24336== by 0x112E2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24336== by 0x1134C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24336== by 0x10EAB5: main (TestChebyshevIteration.cpp:19) +==24336== +==24336== Open file descriptor 113: +==24336== +==24336== +==24336== Open file descriptor 110: +==24336== +==24336== +==24336== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChebyshevIteration_valgrind.txt +==24336== +==24336== +==24336== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24336== +==24336== +==24336== +==24336== HEAP SUMMARY: +==24336== in use at exit: 617,854 bytes in 8,238 blocks +==24336== total heap usage: 49,164 allocs, 40,926 frees, 1,357,740,135 bytes allocated +==24336== +==24336== LEAK SUMMARY: +==24336== definitely lost: 0 bytes in 0 blocks +==24336== indirectly lost: 0 bytes in 0 blocks +==24336== possibly lost: 0 bytes in 0 blocks +==24336== still reachable: 24 bytes in 2 blocks +==24336== suppressed: 617,830 bytes in 8,236 blocks +==24336== Reachable blocks (those to which a pointer was found) are not shown. +==24336== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24336== +==24336== For lists of detected and suppressed errors, rerun with: -s +==24336== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCheckpointing_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCheckpointing_valgrind.txt new file mode 100644 index 000000000..dda998d01 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCheckpointing_valgrind.txt @@ -0,0 +1,73 @@ +==43785== Memcheck, a memory error detector +==43785== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43785== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43785== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCheckpointing -malloc_debug -malloc_dump -memory_info +==43785== Parent PID: 24036 +==43785== +==43785== +==43785== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43785== Open file descriptor 12: +==43785== at 0xA7C307D: pipe (pipe.c:29) +==43785== by 0x1432407D: ??? +==43785== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43785== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43785== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43785== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==43785== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43785== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43785== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43785== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43785== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43785== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43785== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43785== by 0x11CCF5: main (TestCheckpointing.cpp:18) +==43785== +==43785== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43785== at 0xA7C7A1C: __open_nocancel (open64_nocancel.c:39) +==43785== by 0xA74BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43785== by 0xA0E5822: ??? +==43785== by 0xA0E596F: ??? +==43785== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43785== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43785== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43785== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43785== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43785== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43785== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==43785== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43785== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43785== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43785== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43785== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43785== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43785== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43785== by 0x11CCF5: main (TestCheckpointing.cpp:18) +==43785== +==43785== Open file descriptor 113: +==43785== +==43785== +==43785== Open file descriptor 110: +==43785== +==43785== +==43785== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCheckpointing_valgrind.txt +==43785== +==43785== +==43785== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43785== +==43785== +==43785== +==43785== HEAP SUMMARY: +==43785== in use at exit: 618,743 bytes in 8,244 blocks +==43785== total heap usage: 834,308 allocs, 826,064 frees, 1,443,021,694 bytes allocated +==43785== +==43785== LEAK SUMMARY: +==43785== definitely lost: 0 bytes in 0 blocks +==43785== indirectly lost: 0 bytes in 0 blocks +==43785== possibly lost: 0 bytes in 0 blocks +==43785== still reachable: 24 bytes in 2 blocks +==43785== suppressed: 618,719 bytes in 8,242 blocks +==43785== Reachable blocks (those to which a pointer was found) are not shown. +==43785== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43785== +==43785== For lists of detected and suppressed errors, rerun with: -s +==43785== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 60 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCitations_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCitations_valgrind.txt new file mode 100644 index 000000000..eb7e0f1a9 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCitations_valgrind.txt @@ -0,0 +1,79 @@ +==24039== Memcheck, a memory error detector +==24039== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24039== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24039== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCitations -malloc_debug -malloc_dump -memory_info +==24039== Parent PID: 24036 +==24039== +==24039== +==24039== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24039== Open file descriptor 12: +==24039== at 0x4CB207D: pipe (pipe.c:29) +==24039== by 0xAEA507D: ??? +==24039== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24039== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24039== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24039== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24039== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24039== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24039== by 0x11862B: TestCitations::TestChasteCitation() (TestCitations.hpp:72) +==24039== by 0x118ED8: TestDescription_TestCitations_TestChasteCitation::runTest() (TestCitations.cpp:30) +==24039== by 0x111C4A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==24039== by 0x114E74: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==24039== by 0x114D59: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==24039== by 0x114BFF: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==24039== by 0x114AC1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24039== by 0x1150D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24039== by 0x110C15: main (TestCitations.cpp:18) +==24039== +==24039== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24039== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24039== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24039== by 0x4935822: ??? +==24039== by 0x493596F: ??? +==24039== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24039== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24039== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24039== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24039== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24039== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24039== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24039== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24039== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24039== by 0x11862B: TestCitations::TestChasteCitation() (TestCitations.hpp:72) +==24039== by 0x118ED8: TestDescription_TestCitations_TestChasteCitation::runTest() (TestCitations.cpp:30) +==24039== by 0x111C4A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==24039== by 0x114E74: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==24039== by 0x114D59: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==24039== by 0x114BFF: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==24039== by 0x114AC1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24039== by 0x1150D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24039== by 0x110C15: main (TestCitations.cpp:18) +==24039== +==24039== Open file descriptor 113: +==24039== +==24039== +==24039== Open file descriptor 110: +==24039== +==24039== +==24039== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCitations_valgrind.txt +==24039== +==24039== +==24039== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24039== +==24039== +==24039== +==24039== HEAP SUMMARY: +==24039== in use at exit: 617,838 bytes in 8,238 blocks +==24039== total heap usage: 45,216 allocs, 36,978 frees, 1,338,328,521 bytes allocated +==24039== +==24039== LEAK SUMMARY: +==24039== definitely lost: 0 bytes in 0 blocks +==24039== indirectly lost: 0 bytes in 0 blocks +==24039== possibly lost: 0 bytes in 0 blocks +==24039== still reachable: 24 bytes in 2 blocks +==24039== suppressed: 617,814 bytes in 8,236 blocks +==24039== Reachable blocks (those to which a pointer was found) are not shown. +==24039== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24039== +==24039== For lists of detected and suppressed errors, rerun with: -s +==24039== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCodegenPresent_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCodegenPresent_valgrind.txt new file mode 100644 index 000000000..343457949 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCodegenPresent_valgrind.txt @@ -0,0 +1,73 @@ +==42663== Memcheck, a memory error detector +==42663== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42663== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42663== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCodegenPresent -malloc_debug -malloc_dump -memory_info +==42663== Parent PID: 24036 +==42663== +==42663== +==42663== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42663== Open file descriptor 12: +==42663== at 0x616907D: pipe (pipe.c:29) +==42663== by 0xAEA507D: ??? +==42663== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42663== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42663== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42663== by 0x4A23D38: PetscInitialize (pinit.c:924) +==42663== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42663== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42663== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42663== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42663== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42663== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42663== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42663== by 0x10C695: main (TestCodegenPresent.cpp:18) +==42663== +==42663== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42663== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==42663== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42663== by 0x5CB3822: ??? +==42663== by 0x5CB396F: ??? +==42663== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42663== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42663== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42663== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42663== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42663== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42663== by 0x4A23D38: PetscInitialize (pinit.c:924) +==42663== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42663== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42663== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42663== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42663== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42663== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42663== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42663== by 0x10C695: main (TestCodegenPresent.cpp:18) +==42663== +==42663== Open file descriptor 113: +==42663== +==42663== +==42663== Open file descriptor 110: +==42663== +==42663== +==42663== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCodegenPresent_valgrind.txt +==42663== +==42663== +==42663== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42663== +==42663== +==42663== +==42663== HEAP SUMMARY: +==42663== in use at exit: 617,838 bytes in 8,238 blocks +==42663== total heap usage: 44,921 allocs, 36,683 frees, 1,338,160,304 bytes allocated +==42663== +==42663== LEAK SUMMARY: +==42663== definitely lost: 0 bytes in 0 blocks +==42663== indirectly lost: 0 bytes in 0 blocks +==42663== possibly lost: 0 bytes in 0 blocks +==42663== still reachable: 24 bytes in 2 blocks +==42663== suppressed: 617,814 bytes in 8,236 blocks +==42663== Reachable blocks (those to which a pointer was found) are not shown. +==42663== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42663== +==42663== For lists of detected and suppressed errors, rerun with: -s +==42663== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestColumnDataReaderWriter_valgrind.txt b/log-files/2024-09-20_21-41-09/TestColumnDataReaderWriter_valgrind.txt new file mode 100644 index 000000000..a18a22e0d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestColumnDataReaderWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24287== Memcheck, a memory error detector +==24287== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24287== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24287== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestColumnDataReaderWriter -malloc_debug -malloc_dump -memory_info +==24287== Parent PID: 24036 +==24287== +==24287== +==24287== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24287== Open file descriptor 12: +==24287== at 0x61DC07D: pipe (pipe.c:29) +==24287== by 0xAF1807D: ??? +==24287== by 0x8A2F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24287== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24287== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24287== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24287== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24287== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24287== by 0x11A4DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24287== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24287== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24287== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24287== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24287== by 0x113AF5: main (TestColumnDataReaderWriter.cpp:19) +==24287== +==24287== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24287== at 0x61E0A1C: __open_nocancel (open64_nocancel.c:39) +==24287== by 0x6164BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24287== by 0x5D26822: ??? +==24287== by 0x5D2696F: ??? +==24287== by 0x8AD66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24287== by 0x8AD6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24287== by 0x8A8C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24287== by 0x8A2F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24287== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24287== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24287== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24287== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24287== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24287== by 0x11A4DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24287== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24287== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24287== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24287== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24287== by 0x113AF5: main (TestColumnDataReaderWriter.cpp:19) +==24287== +==24287== Open file descriptor 113: +==24287== +==24287== +==24287== Open file descriptor 110: +==24287== +==24287== +==24287== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestColumnDataReaderWriter_valgrind.txt +==24287== +==24287== +==24287== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24287== +==24287== +==24287== +==24287== HEAP SUMMARY: +==24287== in use at exit: 617,854 bytes in 8,238 blocks +==24287== total heap usage: 61,709 allocs, 53,471 frees, 1,341,174,265 bytes allocated +==24287== +==24287== LEAK SUMMARY: +==24287== definitely lost: 0 bytes in 0 blocks +==24287== indirectly lost: 0 bytes in 0 blocks +==24287== possibly lost: 0 bytes in 0 blocks +==24287== still reachable: 24 bytes in 2 blocks +==24287== suppressed: 617,830 bytes in 8,236 blocks +==24287== Reachable blocks (those to which a pointer was found) are not shown. +==24287== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24287== +==24287== For lists of detected and suppressed errors, rerun with: -s +==24287== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCombinedOdeSystem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCombinedOdeSystem_valgrind.txt new file mode 100644 index 000000000..443c501e3 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCombinedOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24921== Memcheck, a memory error detector +==24921== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24921== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24921== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestCombinedOdeSystem -malloc_debug -malloc_dump -memory_info +==24921== Parent PID: 24036 +==24921== +==24921== +==24921== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24921== Open file descriptor 12: +==24921== at 0x4F1007D: pipe (pipe.c:29) +==24921== by 0xB1E607D: ??? +==24921== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24921== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24921== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24921== by 0x5308D38: PetscInitialize (pinit.c:924) +==24921== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24921== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24921== by 0x11FE4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24921== by 0x11AEED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24921== by 0x11DACC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24921== by 0x11D9C7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24921== by 0x11DFDB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24921== by 0x118A75: main (TestCombinedOdeSystem.cpp:18) +==24921== +==24921== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24921== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39) +==24921== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24921== by 0x4B77822: ??? +==24921== by 0x4B7796F: ??? +==24921== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24921== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24921== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24921== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24921== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24921== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24921== by 0x5308D38: PetscInitialize (pinit.c:924) +==24921== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24921== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24921== by 0x11FE4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24921== by 0x11AEED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24921== by 0x11DACC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24921== by 0x11D9C7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24921== by 0x11DFDB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24921== by 0x118A75: main (TestCombinedOdeSystem.cpp:18) +==24921== +==24921== Open file descriptor 113: +==24921== +==24921== +==24921== Open file descriptor 110: +==24921== +==24921== +==24921== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCombinedOdeSystem_valgrind.txt +==24921== +==24921== +==24921== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24921== +==24921== +==24921== +==24921== HEAP SUMMARY: +==24921== in use at exit: 617,902 bytes in 8,238 blocks +==24921== total heap usage: 46,089 allocs, 37,851 frees, 1,338,258,611 bytes allocated +==24921== +==24921== LEAK SUMMARY: +==24921== definitely lost: 0 bytes in 0 blocks +==24921== indirectly lost: 0 bytes in 0 blocks +==24921== possibly lost: 0 bytes in 0 blocks +==24921== still reachable: 24 bytes in 2 blocks +==24921== suppressed: 617,878 bytes in 8,236 blocks +==24921== Reachable blocks (those to which a pointer was found) are not shown. +==24921== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24921== +==24921== For lists of detected and suppressed errors, rerun with: -s +==24921== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCommandLineArgumentsTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCommandLineArgumentsTutorial_valgrind.txt new file mode 100644 index 000000000..969fb0ea7 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCommandLineArgumentsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==24281== Memcheck, a memory error detector +==24281== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24281== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24281== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCommandLineArgumentsTutorial -malloc_debug -malloc_dump -memory_info +==24281== Parent PID: 24036 +==24281== +==24281== +==24281== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24281== Open file descriptor 12: +==24281== at 0x4CB207D: pipe (pipe.c:29) +==24281== by 0xAEA507D: ??? +==24281== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24281== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24281== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24281== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24281== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24281== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24281== by 0x112FDA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24281== by 0x10EE73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24281== by 0x111094: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24281== by 0x110F90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24281== by 0x1115A3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24281== by 0x10D675: main (TestCommandLineArgumentsTutorial.cpp:18) +==24281== +==24281== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24281== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24281== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24281== by 0x4935822: ??? +==24281== by 0x493596F: ??? +==24281== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24281== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24281== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24281== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24281== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24281== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24281== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24281== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24281== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24281== by 0x112FDA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24281== by 0x10EE73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24281== by 0x111094: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24281== by 0x110F90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24281== by 0x1115A3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24281== by 0x10D675: main (TestCommandLineArgumentsTutorial.cpp:18) +==24281== +==24281== Open file descriptor 113: +==24281== +==24281== +==24281== Open file descriptor 110: +==24281== +==24281== +==24281== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCommandLineArgumentsTutorial_valgrind.txt +==24281== +==24281== +==24281== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24281== +==24281== +==24281== +==24281== HEAP SUMMARY: +==24281== in use at exit: 617,838 bytes in 8,238 blocks +==24281== total heap usage: 44,942 allocs, 36,704 frees, 1,338,162,675 bytes allocated +==24281== +==24281== LEAK SUMMARY: +==24281== definitely lost: 0 bytes in 0 blocks +==24281== indirectly lost: 0 bytes in 0 blocks +==24281== possibly lost: 0 bytes in 0 blocks +==24281== still reachable: 24 bytes in 2 blocks +==24281== suppressed: 617,814 bytes in 8,236 blocks +==24281== Reachable blocks (those to which a pointer was found) are not shown. +==24281== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24281== +==24281== For lists of detected and suppressed errors, rerun with: -s +==24281== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCommandLineArguments_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCommandLineArguments_valgrind.txt new file mode 100644 index 000000000..715623fdd --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCommandLineArguments_valgrind.txt @@ -0,0 +1,73 @@ +==24040== Memcheck, a memory error detector +==24040== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24040== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24040== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCommandLineArguments -malloc_debug -malloc_dump -memory_info +==24040== Parent PID: 24036 +==24040== +==24040== +==24040== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24040== Open file descriptor 12: +==24040== at 0x4CB207D: pipe (pipe.c:29) +==24040== by 0xAEA507D: ??? +==24040== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24040== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24040== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24040== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24040== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24040== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24040== by 0x115FD0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24040== by 0x11158D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24040== by 0x114072: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24040== by 0x113F12: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24040== by 0x1145A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24040== by 0x10F9B5: main (TestCommandLineArguments.cpp:19) +==24040== +==24040== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24040== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24040== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24040== by 0x4935822: ??? +==24040== by 0x493596F: ??? +==24040== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24040== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24040== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24040== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24040== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24040== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24040== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24040== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24040== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24040== by 0x115FD0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24040== by 0x11158D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24040== by 0x114072: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24040== by 0x113F12: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24040== by 0x1145A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24040== by 0x10F9B5: main (TestCommandLineArguments.cpp:19) +==24040== +==24040== Open file descriptor 113: +==24040== +==24040== +==24040== Open file descriptor 110: +==24040== +==24040== +==24040== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCommandLineArguments_valgrind.txt +==24040== +==24040== +==24040== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24040== +==24040== +==24040== +==24040== HEAP SUMMARY: +==24040== in use at exit: 617,838 bytes in 8,238 blocks +==24040== total heap usage: 45,102 allocs, 36,864 frees, 1,338,179,415 bytes allocated +==24040== +==24040== LEAK SUMMARY: +==24040== definitely lost: 0 bytes in 0 blocks +==24040== indirectly lost: 0 bytes in 0 blocks +==24040== possibly lost: 0 bytes in 0 blocks +==24040== still reachable: 24 bytes in 2 blocks +==24040== suppressed: 617,814 bytes in 8,236 blocks +==24040== Reachable blocks (those to which a pointer was found) are not shown. +==24040== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24040== +==24040== For lists of detected and suppressed errors, rerun with: -s +==24040== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCompressibleNonlinearElasticitySolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCompressibleNonlinearElasticitySolver_valgrind.txt new file mode 100644 index 000000000..ed13b37ce --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCompressibleNonlinearElasticitySolver_valgrind.txt @@ -0,0 +1,73 @@ +==25285== Memcheck, a memory error detector +==25285== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25285== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25285== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestCompressibleNonlinearElasticitySolver -malloc_debug -malloc_dump -memory_info +==25285== Parent PID: 24036 +==25285== +==25285== +==25285== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25285== Open file descriptor 12: +==25285== at 0x879E07D: pipe (pipe.c:29) +==25285== by 0x106D807D: ??? +==25285== by 0xBF914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25285== by 0x7FBF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25285== by 0x7F58D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25285== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25285== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25285== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25285== by 0x169A90: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25285== by 0x163FD1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25285== by 0x16757C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25285== by 0x16741C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25285== by 0x167AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25285== by 0x161595: main (TestCompressibleNonlinearElasticitySolver.cpp:19) +==25285== +==25285== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25285== at 0x87A2A1C: __open_nocancel (open64_nocancel.c:39) +==25285== by 0x8726BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25285== by 0x7EBC822: ??? +==25285== by 0x7EBC96F: ??? +==25285== by 0xC0366DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25285== by 0xC036938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25285== by 0xBFEC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25285== by 0xBF912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25285== by 0x7FBF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25285== by 0x7F58D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25285== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25285== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25285== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25285== by 0x169A90: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25285== by 0x163FD1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25285== by 0x16757C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25285== by 0x16741C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25285== by 0x167AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25285== by 0x161595: main (TestCompressibleNonlinearElasticitySolver.cpp:19) +==25285== +==25285== Open file descriptor 113: +==25285== +==25285== +==25285== Open file descriptor 110: +==25285== +==25285== +==25285== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCompressibleNonlinearElasticitySolver_valgrind.txt +==25285== +==25285== +==25285== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25285== +==25285== +==25285== +==25285== HEAP SUMMARY: +==25285== in use at exit: 618,270 bytes in 8,238 blocks +==25285== total heap usage: 309,155 allocs, 300,917 frees, 1,381,168,600 bytes allocated +==25285== +==25285== LEAK SUMMARY: +==25285== definitely lost: 0 bytes in 0 blocks +==25285== indirectly lost: 0 bytes in 0 blocks +==25285== possibly lost: 0 bytes in 0 blocks +==25285== still reachable: 24 bytes in 2 blocks +==25285== suppressed: 618,246 bytes in 8,236 blocks +==25285== Reachable blocks (those to which a pointer was found) are not shown. +==25285== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25285== +==25285== For lists of detected and suppressed errors, rerun with: -s +==25285== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestConductivityTensors_valgrind.txt b/log-files/2024-09-20_21-41-09/TestConductivityTensors_valgrind.txt new file mode 100644 index 000000000..1af084d1f --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestConductivityTensors_valgrind.txt @@ -0,0 +1,73 @@ +==43805== Memcheck, a memory error detector +==43805== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43805== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43805== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestConductivityTensors -malloc_debug -malloc_dump -memory_info +==43805== Parent PID: 24036 +==43805== +==43805== +==43805== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43805== Open file descriptor 12: +==43805== at 0xA68407D: pipe (pipe.c:29) +==43805== by 0x1432407D: ??? +==43805== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43805== by 0xBD7D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43805== by 0xBD16D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43805== by 0xAA0DD38: PetscInitialize (pinit.c:924) +==43805== by 0x9E841D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43805== by 0x9E84227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43805== by 0x1288D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43805== by 0x123B0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43805== by 0x12665E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43805== by 0x1264FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43805== by 0x126B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43805== by 0x121F35: main (TestConductivityTensors.cpp:19) +==43805== +==43805== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43805== at 0xA688A1C: __open_nocancel (open64_nocancel.c:39) +==43805== by 0xA60CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43805== by 0x9EBF822: ??? +==43805== by 0x9EBF96F: ??? +==43805== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43805== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43805== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43805== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43805== by 0xBD7D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43805== by 0xBD16D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43805== by 0xAA0DD38: PetscInitialize (pinit.c:924) +==43805== by 0x9E841D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43805== by 0x9E84227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43805== by 0x1288D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43805== by 0x123B0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43805== by 0x12665E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43805== by 0x1264FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43805== by 0x126B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43805== by 0x121F35: main (TestConductivityTensors.cpp:19) +==43805== +==43805== Open file descriptor 113: +==43805== +==43805== +==43805== Open file descriptor 110: +==43805== +==43805== +==43805== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConductivityTensors_valgrind.txt +==43805== +==43805== +==43805== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43805== +==43805== +==43805== +==43805== HEAP SUMMARY: +==43805== in use at exit: 618,334 bytes in 8,238 blocks +==43805== total heap usage: 58,721 allocs, 50,483 frees, 1,339,525,291 bytes allocated +==43805== +==43805== LEAK SUMMARY: +==43805== definitely lost: 0 bytes in 0 blocks +==43805== indirectly lost: 0 bytes in 0 blocks +==43805== possibly lost: 0 bytes in 0 blocks +==43805== still reachable: 24 bytes in 2 blocks +==43805== suppressed: 618,310 bytes in 8,236 blocks +==43805== Reachable blocks (those to which a pointer was found) are not shown. +==43805== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43805== +==43805== For lists of detected and suppressed errors, rerun with: -s +==43805== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestConstBoundaryCondition_valgrind.txt b/log-files/2024-09-20_21-41-09/TestConstBoundaryCondition_valgrind.txt new file mode 100644 index 000000000..ef0471e29 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestConstBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==25220== Memcheck, a memory error detector +==25220== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25220== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25220== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestConstBoundaryCondition -malloc_debug -malloc_dump -memory_info +==25220== Parent PID: 24036 +==25220== +==25220== +==25220== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25220== Open file descriptor 12: +==25220== at 0x6CAC07D: pipe (pipe.c:29) +==25220== by 0x104D507D: ??? +==25220== by 0xC31D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25220== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25220== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25220== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25220== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25220== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25220== by 0x111DEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25220== by 0x10DBB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25220== by 0x10FEA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25220== by 0x10FD9D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25220== by 0x1103B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25220== by 0x10C3B5: main (TestConstBoundaryCondition.cpp:18) +==25220== +==25220== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25220== at 0x6CB0A1C: __open_nocancel (open64_nocancel.c:39) +==25220== by 0x6C34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25220== by 0x692F822: ??? +==25220== by 0x692F96F: ??? +==25220== by 0xC3C26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25220== by 0xC3C2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25220== by 0xC378922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25220== by 0xC31D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25220== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25220== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25220== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25220== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25220== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25220== by 0x111DEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25220== by 0x10DBB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25220== by 0x10FEA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25220== by 0x10FD9D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25220== by 0x1103B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25220== by 0x10C3B5: main (TestConstBoundaryCondition.cpp:18) +==25220== +==25220== Open file descriptor 113: +==25220== +==25220== +==25220== Open file descriptor 110: +==25220== +==25220== +==25220== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConstBoundaryCondition_valgrind.txt +==25220== +==25220== +==25220== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25220== +==25220== +==25220== +==25220== HEAP SUMMARY: +==25220== in use at exit: 618,254 bytes in 8,238 blocks +==25220== total heap usage: 47,330 allocs, 39,092 frees, 1,338,384,073 bytes allocated +==25220== +==25220== LEAK SUMMARY: +==25220== definitely lost: 0 bytes in 0 blocks +==25220== indirectly lost: 0 bytes in 0 blocks +==25220== possibly lost: 0 bytes in 0 blocks +==25220== still reachable: 24 bytes in 2 blocks +==25220== suppressed: 618,230 bytes in 8,236 blocks +==25220== Reachable blocks (those to which a pointer was found) are not shown. +==25220== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25220== +==25220== For lists of detected and suppressed errors, rerun with: -s +==25220== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt b/log-files/2024-09-20_21-41-09/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt new file mode 100644 index 000000000..c6ef4f3ef --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25287== Memcheck, a memory error detector +==25287== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25287== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25287== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestContinuumMechanicsNeumannBcsAssembler -malloc_debug -malloc_dump -memory_info +==25287== Parent PID: 24036 +==25287== +==25287== +==25287== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25287== Open file descriptor 12: +==25287== at 0x866707D: pipe (pipe.c:29) +==25287== by 0x106D807D: ??? +==25287== by 0xC4EC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25287== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25287== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25287== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25287== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25287== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25287== by 0x132A16: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25287== by 0x12DD0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25287== by 0x130686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25287== by 0x130526: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25287== by 0x130BBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25287== by 0x12C135: main (TestContinuumMechanicsNeumannBcsAssembler.cpp:19) +==25287== +==25287== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25287== at 0x866BA1C: __open_nocancel (open64_nocancel.c:39) +==25287== by 0x85EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25287== by 0x7EBC822: ??? +==25287== by 0x7EBC96F: ??? +==25287== by 0xC5916DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25287== by 0xC591938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25287== by 0xC547922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25287== by 0xC4EC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25287== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25287== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25287== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25287== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25287== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25287== by 0x132A16: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25287== by 0x12DD0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25287== by 0x130686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25287== by 0x130526: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25287== by 0x130BBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25287== by 0x12C135: main (TestContinuumMechanicsNeumannBcsAssembler.cpp:19) +==25287== +==25287== Open file descriptor 113: +==25287== +==25287== +==25287== Open file descriptor 110: +==25287== +==25287== +==25287== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt +==25287== +==25287== +==25287== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25287== +==25287== +==25287== +==25287== HEAP SUMMARY: +==25287== in use at exit: 618,270 bytes in 8,238 blocks +==25287== total heap usage: 48,482 allocs, 40,244 frees, 1,338,691,694 bytes allocated +==25287== +==25287== LEAK SUMMARY: +==25287== definitely lost: 0 bytes in 0 blocks +==25287== indirectly lost: 0 bytes in 0 blocks +==25287== possibly lost: 0 bytes in 0 blocks +==25287== still reachable: 24 bytes in 2 blocks +==25287== suppressed: 618,246 bytes in 8,236 blocks +==25287== Reachable blocks (those to which a pointer was found) are not shown. +==25287== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25287== +==25287== For lists of detected and suppressed errors, rerun with: -s +==25287== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestContractionModels_valgrind.txt b/log-files/2024-09-20_21-41-09/TestContractionModels_valgrind.txt new file mode 100644 index 000000000..37d708144 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestContractionModels_valgrind.txt @@ -0,0 +1,73 @@ +==43392== Memcheck, a memory error detector +==43392== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43392== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43392== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestContractionModels -malloc_debug -malloc_dump -memory_info +==43392== Parent PID: 24036 +==43392== +==43392== +==43392== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43392== Open file descriptor 12: +==43392== at 0x9DBF07D: pipe (pipe.c:29) +==43392== by 0x1432407D: ??? +==43392== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43392== by 0x990B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43392== by 0x98A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43392== by 0x8578D38: PetscInitialize (pinit.c:924) +==43392== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43392== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43392== by 0x12263F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43392== by 0x11CBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43392== by 0x11F788: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43392== by 0x11F628: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43392== by 0x11FCBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43392== by 0x11AE95: main (TestContractionModels.cpp:19) +==43392== +==43392== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43392== at 0x9DC3A1C: __open_nocancel (open64_nocancel.c:39) +==43392== by 0x9D47BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43392== by 0x9808822: ??? +==43392== by 0x980896F: ??? +==43392== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43392== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43392== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43392== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43392== by 0x990B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43392== by 0x98A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43392== by 0x8578D38: PetscInitialize (pinit.c:924) +==43392== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43392== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43392== by 0x12263F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43392== by 0x11CBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43392== by 0x11F788: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43392== by 0x11F628: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43392== by 0x11FCBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43392== by 0x11AE95: main (TestContractionModels.cpp:19) +==43392== +==43392== Open file descriptor 113: +==43392== +==43392== +==43392== Open file descriptor 110: +==43392== +==43392== +==43392== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestContractionModels_valgrind.txt +==43392== +==43392== +==43392== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43392== +==43392== +==43392== +==43392== HEAP SUMMARY: +==43392== in use at exit: 618,263 bytes in 8,234 blocks +==43392== total heap usage: 4,643,676 allocs, 4,635,442 frees, 1,548,568,389 bytes allocated +==43392== +==43392== LEAK SUMMARY: +==43392== definitely lost: 0 bytes in 0 blocks +==43392== indirectly lost: 0 bytes in 0 blocks +==43392== possibly lost: 0 bytes in 0 blocks +==43392== still reachable: 24 bytes in 2 blocks +==43392== suppressed: 618,239 bytes in 8,232 blocks +==43392== Reachable blocks (those to which a pointer was found) are not shown. +==43392== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43392== +==43392== For lists of detected and suppressed errors, rerun with: -s +==43392== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestConvergenceTester_valgrind.txt b/log-files/2024-09-20_21-41-09/TestConvergenceTester_valgrind.txt new file mode 100644 index 000000000..c917df23e --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestConvergenceTester_valgrind.txt @@ -0,0 +1,73 @@ +==41456== Memcheck, a memory error detector +==41456== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41456== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41456== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestConvergenceTester -malloc_debug -malloc_dump -memory_info +==41456== Parent PID: 24036 +==41456== +==41456== +==41456== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41456== Open file descriptor 12: +==41456== at 0xAC4707D: pipe (pipe.c:29) +==41456== by 0x1432407D: ??? +==41456== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41456== by 0xC342418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41456== by 0xC2DBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41456== by 0xAFD2D38: PetscInitialize (pinit.c:924) +==41456== by 0xA4471D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41456== by 0xA447227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41456== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41456== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41456== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41456== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41456== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41456== by 0x11B5F5: main (TestConvergenceTester.cpp:18) +==41456== +==41456== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41456== at 0xAC4BA1C: __open_nocancel (open64_nocancel.c:39) +==41456== by 0xABCFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41456== by 0xA482822: ??? +==41456== by 0xA48296F: ??? +==41456== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41456== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41456== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41456== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41456== by 0xC342418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41456== by 0xC2DBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41456== by 0xAFD2D38: PetscInitialize (pinit.c:924) +==41456== by 0xA4471D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41456== by 0xA447227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41456== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41456== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41456== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41456== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41456== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41456== by 0x11B5F5: main (TestConvergenceTester.cpp:18) +==41456== +==41456== Open file descriptor 113: +==41456== +==41456== +==41456== Open file descriptor 110: +==41456== +==41456== +==41456== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConvergenceTester_valgrind.txt +==41456== +==41456== +==41456== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41456== +==41456== +==41456== +==41456== HEAP SUMMARY: +==41456== in use at exit: 618,814 bytes in 8,248 blocks +==41456== total heap usage: 1,810,245 allocs, 1,801,997 frees, 1,914,182,568 bytes allocated +==41456== +==41456== LEAK SUMMARY: +==41456== definitely lost: 0 bytes in 0 blocks +==41456== indirectly lost: 0 bytes in 0 blocks +==41456== possibly lost: 0 bytes in 0 blocks +==41456== still reachable: 24 bytes in 2 blocks +==41456== suppressed: 618,790 bytes in 8,246 blocks +==41456== Reachable blocks (those to which a pointer was found) are not shown. +==41456== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41456== +==41456== For lists of detected and suppressed errors, rerun with: -s +==41456== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 121 from 38) diff --git a/log-files/2024-09-20_21-41-09/TestCoupledCableTestProblem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCoupledCableTestProblem_valgrind.txt new file mode 100644 index 000000000..1b84f017e --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCoupledCableTestProblem_valgrind.txt @@ -0,0 +1,73 @@ +==25009== Memcheck, a memory error detector +==25009== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25009== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25009== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestCoupledCableTestProblem -malloc_debug -malloc_dump -memory_info +==25009== Parent PID: 24036 +==25009== +==25009== +==25009== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25009== Open file descriptor 12: +==25009== at 0x84E707D: pipe (pipe.c:29) +==25009== by 0x104D507D: ??? +==25009== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25009== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25009== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25009== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25009== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25009== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25009== by 0x13CC22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25009== by 0x137D33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25009== by 0x13A8DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25009== by 0x13A7D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25009== by 0x13ADE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25009== by 0x136535: main (TestCoupledCableTestProblem.cpp:18) +==25009== +==25009== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25009== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25009== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25009== by 0x7D3C822: ??? +==25009== by 0x7D3C96F: ??? +==25009== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25009== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25009== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25009== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25009== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25009== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25009== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25009== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25009== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25009== by 0x13CC22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25009== by 0x137D33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25009== by 0x13A8DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25009== by 0x13A7D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25009== by 0x13ADE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25009== by 0x136535: main (TestCoupledCableTestProblem.cpp:18) +==25009== +==25009== Open file descriptor 113: +==25009== +==25009== +==25009== Open file descriptor 110: +==25009== +==25009== +==25009== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCoupledCableTestProblem_valgrind.txt +==25009== +==25009== +==25009== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25009== +==25009== +==25009== +==25009== HEAP SUMMARY: +==25009== in use at exit: 618,254 bytes in 8,238 blocks +==25009== total heap usage: 501,737 allocs, 493,499 frees, 1,359,093,990 bytes allocated +==25009== +==25009== LEAK SUMMARY: +==25009== definitely lost: 0 bytes in 0 blocks +==25009== indirectly lost: 0 bytes in 0 blocks +==25009== possibly lost: 0 bytes in 0 blocks +==25009== still reachable: 24 bytes in 2 blocks +==25009== suppressed: 618,230 bytes in 8,236 blocks +==25009== Reachable blocks (those to which a pointer was found) are not shown. +==25009== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25009== +==25009== For lists of detected and suppressed errors, rerun with: -s +==25009== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt new file mode 100644 index 000000000..5c8efcbe5 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39693== Memcheck, a memory error detector +==39693== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39693== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39693== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial -malloc_debug -malloc_dump -memory_info +==39693== Parent PID: 24036 +==39693== +==39693== +==39693== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39693== Open file descriptor 12: +==39693== at 0x10CF207D: pipe (pipe.c:29) +==39693== by 0x196AD07D: ??? +==39693== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39693== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39693== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39693== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39693== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39693== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39693== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39693== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39693== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39693== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39693== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39693== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) +==39693== +==39693== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39693== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==39693== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39693== by 0xF137822: ??? +==39693== by 0xF13796F: ??? +==39693== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39693== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39693== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39693== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39693== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39693== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39693== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39693== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39693== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39693== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39693== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39693== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39693== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39693== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39693== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) +==39693== +==39693== Open file descriptor 113: +==39693== +==39693== +==39693== Open file descriptor 110: +==39693== +==39693== +==39693== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt +==39693== +==39693== +==39693== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39693== +==39693== +==39693== +==39693== HEAP SUMMARY: +==39693== in use at exit: 618,350 bytes in 8,239 blocks +==39693== total heap usage: 514,150 allocs, 505,911 frees, 1,651,566,156 bytes allocated +==39693== +==39693== LEAK SUMMARY: +==39693== definitely lost: 0 bytes in 0 blocks +==39693== indirectly lost: 0 bytes in 0 blocks +==39693== possibly lost: 0 bytes in 0 blocks +==39693== still reachable: 56 bytes in 3 blocks +==39693== suppressed: 618,294 bytes in 8,236 blocks +==39693== Reachable blocks (those to which a pointer was found) are not shown. +==39693== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39693== +==39693== For lists of detected and suppressed errors, rerun with: -s +==39693== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt new file mode 100644 index 000000000..db12f25bf --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39766== Memcheck, a memory error detector +==39766== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39766== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39766== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellCycleModelTutorial -malloc_debug -malloc_dump -memory_info +==39766== Parent PID: 24036 +==39766== +==39766== +==39766== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39766== Open file descriptor 12: +==39766== at 0x10DD907D: pipe (pipe.c:29) +==39766== by 0x196AD07D: ??? +==39766== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39766== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39766== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39766== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39766== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39766== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39766== by 0x2258F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39766== by 0x21F2AB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39766== by 0x222B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39766== by 0x222A01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39766== by 0x223097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39766== by 0x21BBD5: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19) +==39766== +==39766== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39766== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==39766== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39766== by 0xF137822: ??? +==39766== by 0xF13796F: ??? +==39766== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39766== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39766== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39766== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39766== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39766== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39766== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39766== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39766== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39766== by 0x2258F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39766== by 0x21F2AB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39766== by 0x222B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39766== by 0x222A01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39766== by 0x223097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39766== by 0x21BBD5: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19) +==39766== +==39766== Open file descriptor 113: +==39766== +==39766== +==39766== Open file descriptor 110: +==39766== +==39766== +==39766== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt +==39766== +==39766== +==39766== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39766== +==39766== +==39766== +==39766== HEAP SUMMARY: +==39766== in use at exit: 618,279 bytes in 8,235 blocks +==39766== total heap usage: 8,976,907 allocs, 8,968,672 frees, 2,183,735,885 bytes allocated +==39766== +==39766== LEAK SUMMARY: +==39766== definitely lost: 0 bytes in 0 blocks +==39766== indirectly lost: 0 bytes in 0 blocks +==39766== possibly lost: 0 bytes in 0 blocks +==39766== still reachable: 56 bytes in 3 blocks +==39766== suppressed: 618,223 bytes in 8,232 blocks +==39766== Reachable blocks (those to which a pointer was found) are not shown. +==39766== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39766== +==39766== For lists of detected and suppressed errors, rerun with: -s +==39766== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt new file mode 100644 index 000000000..a42cb7838 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39767== Memcheck, a memory error detector +==39767== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39767== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39767== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellKillerTutorial -malloc_debug -malloc_dump -memory_info +==39767== Parent PID: 24036 +==39767== +==39767== +==39767== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39767== Open file descriptor 12: +==39767== at 0x10DD907D: pipe (pipe.c:29) +==39767== by 0x196AD07D: ??? +==39767== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39767== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39767== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39767== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39767== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39767== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39767== by 0x141179: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39767== by 0x13BF3F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39767== by 0x13E6FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39767== by 0x13E5F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39767== by 0x13EC09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39767== by 0x13A735: main (TestCreatingAndUsingANewCellKillerTutorial.cpp:18) +==39767== +==39767== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39767== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==39767== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39767== by 0xF137822: ??? +==39767== by 0xF13796F: ??? +==39767== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39767== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39767== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39767== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39767== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39767== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39767== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39767== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39767== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39767== by 0x141179: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39767== by 0x13BF3F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39767== by 0x13E6FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39767== by 0x13E5F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39767== by 0x13EC09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39767== by 0x13A735: main (TestCreatingAndUsingANewCellKillerTutorial.cpp:18) +==39767== +==39767== Open file descriptor 113: +==39767== +==39767== +==39767== Open file descriptor 110: +==39767== +==39767== +==39767== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt +==39767== +==39767== +==39767== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39767== +==39767== +==39767== +==39767== HEAP SUMMARY: +==39767== in use at exit: 618,279 bytes in 8,235 blocks +==39767== total heap usage: 2,717,562 allocs, 2,709,327 frees, 1,507,788,670 bytes allocated +==39767== +==39767== LEAK SUMMARY: +==39767== definitely lost: 0 bytes in 0 blocks +==39767== indirectly lost: 0 bytes in 0 blocks +==39767== possibly lost: 0 bytes in 0 blocks +==39767== still reachable: 56 bytes in 3 blocks +==39767== suppressed: 618,223 bytes in 8,232 blocks +==39767== Reachable blocks (those to which a pointer was found) are not shown. +==39767== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39767== +==39767== For lists of detected and suppressed errors, rerun with: -s +==39767== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt new file mode 100644 index 000000000..bb14e1016 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39768== Memcheck, a memory error detector +==39768== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39768== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39768== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellMutationStateTutorial -malloc_debug -malloc_dump -memory_info +==39768== Parent PID: 24036 +==39768== +==39768== +==39768== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39768== Open file descriptor 12: +==39768== at 0x10CF207D: pipe (pipe.c:29) +==39768== by 0x196AD07D: ??? +==39768== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39768== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39768== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39768== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39768== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39768== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39768== by 0x149987: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39768== by 0x1442D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39768== by 0x146FD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39768== by 0x146E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39768== by 0x147509: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39768== by 0x1426F5: main (TestCreatingAndUsingANewCellMutationStateTutorial.cpp:19) +==39768== +==39768== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39768== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==39768== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39768== by 0xF137822: ??? +==39768== by 0xF13796F: ??? +==39768== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39768== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39768== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39768== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39768== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39768== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39768== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39768== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39768== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39768== by 0x149987: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39768== by 0x1442D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39768== by 0x146FD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39768== by 0x146E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39768== by 0x147509: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39768== by 0x1426F5: main (TestCreatingAndUsingANewCellMutationStateTutorial.cpp:19) +==39768== +==39768== Open file descriptor 113: +==39768== +==39768== +==39768== Open file descriptor 110: +==39768== +==39768== +==39768== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt +==39768== +==39768== +==39768== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39768== +==39768== +==39768== +==39768== HEAP SUMMARY: +==39768== in use at exit: 618,279 bytes in 8,235 blocks +==39768== total heap usage: 4,262,895 allocs, 4,254,660 frees, 1,898,477,052 bytes allocated +==39768== +==39768== LEAK SUMMARY: +==39768== definitely lost: 0 bytes in 0 blocks +==39768== indirectly lost: 0 bytes in 0 blocks +==39768== possibly lost: 0 bytes in 0 blocks +==39768== still reachable: 56 bytes in 3 blocks +==39768== suppressed: 618,223 bytes in 8,232 blocks +==39768== Reachable blocks (those to which a pointer was found) are not shown. +==39768== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39768== +==39768== For lists of detected and suppressed errors, rerun with: -s +==39768== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt new file mode 100644 index 000000000..e6fa22e19 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39852== Memcheck, a memory error detector +==39852== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39852== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39852== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial -malloc_debug -malloc_dump -memory_info +==39852== Parent PID: 24036 +==39852== +==39852== +==39852== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39852== Open file descriptor 12: +==39852== at 0x10CF207D: pipe (pipe.c:29) +==39852== by 0x196AD07D: ??? +==39852== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39852== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39852== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39852== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39852== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39852== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39852== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39852== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39852== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39852== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39852== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39852== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) +==39852== +==39852== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39852== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==39852== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39852== by 0xF137822: ??? +==39852== by 0xF13796F: ??? +==39852== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39852== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39852== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39852== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39852== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39852== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39852== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39852== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39852== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39852== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39852== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39852== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39852== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39852== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39852== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) +==39852== +==39852== Open file descriptor 113: +==39852== +==39852== +==39852== Open file descriptor 110: +==39852== +==39852== +==39852== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt +==39852== +==39852== +==39852== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39852== +==39852== +==39852== +==39852== HEAP SUMMARY: +==39852== in use at exit: 618,350 bytes in 8,239 blocks +==39852== total heap usage: 426,445 allocs, 418,206 frees, 1,393,461,542 bytes allocated +==39852== +==39852== LEAK SUMMARY: +==39852== definitely lost: 0 bytes in 0 blocks +==39852== indirectly lost: 0 bytes in 0 blocks +==39852== possibly lost: 0 bytes in 0 blocks +==39852== still reachable: 56 bytes in 3 blocks +==39852== suppressed: 618,294 bytes in 8,236 blocks +==39852== Reachable blocks (those to which a pointer was found) are not shown. +==39852== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39852== +==39852== For lists of detected and suppressed errors, rerun with: -s +==39852== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt new file mode 100644 index 000000000..dc506cb22 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39884== Memcheck, a memory error detector +==39884== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39884== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39884== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellPropertyTutorial -malloc_debug -malloc_dump -memory_info +==39884== Parent PID: 24036 +==39884== +==39884== +==39884== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39884== Open file descriptor 12: +==39884== at 0x10CF207D: pipe (pipe.c:29) +==39884== by 0x196AD07D: ??? +==39884== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39884== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39884== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39884== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39884== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39884== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39884== by 0x1502FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39884== by 0x14A5F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39884== by 0x14D664: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39884== by 0x14D504: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39884== by 0x14DB9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39884== by 0x148A15: main (TestCreatingAndUsingANewCellPropertyTutorial.cpp:19) +==39884== +==39884== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39884== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==39884== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39884== by 0xF137822: ??? +==39884== by 0xF13796F: ??? +==39884== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39884== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39884== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39884== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39884== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39884== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39884== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39884== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39884== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39884== by 0x1502FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39884== by 0x14A5F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39884== by 0x14D664: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39884== by 0x14D504: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39884== by 0x14DB9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39884== by 0x148A15: main (TestCreatingAndUsingANewCellPropertyTutorial.cpp:19) +==39884== +==39884== Open file descriptor 113: +==39884== +==39884== +==39884== Open file descriptor 110: +==39884== +==39884== +==39884== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt +==39884== +==39884== +==39884== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39884== +==39884== +==39884== +==39884== HEAP SUMMARY: +==39884== in use at exit: 618,279 bytes in 8,235 blocks +==39884== total heap usage: 2,410,740 allocs, 2,402,505 frees, 1,556,332,642 bytes allocated +==39884== +==39884== LEAK SUMMARY: +==39884== definitely lost: 0 bytes in 0 blocks +==39884== indirectly lost: 0 bytes in 0 blocks +==39884== possibly lost: 0 bytes in 0 blocks +==39884== still reachable: 56 bytes in 3 blocks +==39884== suppressed: 618,223 bytes in 8,232 blocks +==39884== Reachable blocks (those to which a pointer was found) are not shown. +==39884== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39884== +==39884== For lists of detected and suppressed errors, rerun with: -s +==39884== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewForceTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewForceTutorial_valgrind.txt new file mode 100644 index 000000000..6f5d74ffe --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewForceTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39889== Memcheck, a memory error detector +==39889== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39889== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39889== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewForceTutorial -malloc_debug -malloc_dump -memory_info +==39889== Parent PID: 24036 +==39889== +==39889== +==39889== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39889== Open file descriptor 12: +==39889== at 0x10DD907D: pipe (pipe.c:29) +==39889== by 0x196AD07D: ??? +==39889== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39889== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39889== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39889== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39889== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39889== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39889== by 0x14368F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39889== by 0x13E09F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39889== by 0x140942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39889== by 0x14083D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39889== by 0x140E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39889== by 0x13C895: main (TestCreatingAndUsingANewForceTutorial.cpp:18) +==39889== +==39889== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39889== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==39889== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39889== by 0xF137822: ??? +==39889== by 0xF13796F: ??? +==39889== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39889== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39889== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39889== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39889== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39889== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39889== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39889== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39889== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39889== by 0x14368F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39889== by 0x13E09F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39889== by 0x140942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39889== by 0x14083D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39889== by 0x140E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39889== by 0x13C895: main (TestCreatingAndUsingANewForceTutorial.cpp:18) +==39889== +==39889== Open file descriptor 113: +==39889== +==39889== +==39889== Open file descriptor 110: +==39889== +==39889== +==39889== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewForceTutorial_valgrind.txt +==39889== +==39889== +==39889== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39889== +==39889== +==39889== +==39889== HEAP SUMMARY: +==39889== in use at exit: 618,350 bytes in 8,239 blocks +==39889== total heap usage: 681,547 allocs, 673,308 frees, 1,549,479,314 bytes allocated +==39889== +==39889== LEAK SUMMARY: +==39889== definitely lost: 0 bytes in 0 blocks +==39889== indirectly lost: 0 bytes in 0 blocks +==39889== possibly lost: 0 bytes in 0 blocks +==39889== still reachable: 56 bytes in 3 blocks +==39889== suppressed: 618,294 bytes in 8,236 blocks +==39889== Reachable blocks (those to which a pointer was found) are not shown. +==39889== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39889== +==39889== For lists of detected and suppressed errors, rerun with: -s +==39889== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt new file mode 100644 index 000000000..716b086fa --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39983== Memcheck, a memory error detector +==39983== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39983== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39983== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewSrnModelTutorial -malloc_debug -malloc_dump -memory_info +==39983== Parent PID: 24036 +==39983== +==39983== +==39983== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39983== Open file descriptor 12: +==39983== at 0x1101B07D: pipe (pipe.c:29) +==39983== by 0x196AB07D: ??? +==39983== by 0x14C6C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39983== by 0x1083C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39983== by 0x107D5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39983== by 0xF4CCD38: PetscInitialize (pinit.c:924) +==39983== by 0xF33E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39983== by 0xF33E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39983== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39983== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39983== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39983== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39983== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39983== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) +==39983== +==39983== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39983== at 0x1101FA1C: __open_nocancel (open64_nocancel.c:39) +==39983== by 0x10FA3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39983== by 0xF379822: ??? +==39983== by 0xF37996F: ??? +==39983== by 0x14D116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39983== by 0x14D11938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39983== by 0x14CC7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39983== by 0x14C6C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39983== by 0x1083C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39983== by 0x107D5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39983== by 0xF4CCD38: PetscInitialize (pinit.c:924) +==39983== by 0xF33E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39983== by 0xF33E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39983== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39983== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39983== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39983== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39983== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39983== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) +==39983== +==39983== Open file descriptor 113: +==39983== +==39983== +==39983== Open file descriptor 110: +==39983== +==39983== +==39983== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt +==39983== +==39983== +==39983== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39983== +==39983== +==39983== +==39983== HEAP SUMMARY: +==39983== in use at exit: 618,279 bytes in 8,235 blocks +==39983== total heap usage: 3,817,498 allocs, 3,809,263 frees, 1,509,499,215 bytes allocated +==39983== +==39983== LEAK SUMMARY: +==39983== definitely lost: 0 bytes in 0 blocks +==39983== indirectly lost: 0 bytes in 0 blocks +==39983== possibly lost: 0 bytes in 0 blocks +==39983== still reachable: 56 bytes in 3 blocks +==39983== suppressed: 618,223 bytes in 8,232 blocks +==39983== Reachable blocks (those to which a pointer was found) are not shown. +==39983== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39983== +==39983== For lists of detected and suppressed errors, rerun with: -s +==39983== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt new file mode 100644 index 000000000..a95360541 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40013== Memcheck, a memory error detector +==40013== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40013== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40013== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingNewCellBasedWritersTutorial -malloc_debug -malloc_dump -memory_info +==40013== Parent PID: 24036 +==40013== +==40013== +==40013== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40013== Open file descriptor 12: +==40013== at 0xF83B07D: pipe (pipe.c:29) +==40013== by 0x196AD07D: ??? +==40013== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40013== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40013== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40013== by 0x10127D38: PetscInitialize (pinit.c:924) +==40013== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40013== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40013== by 0x1B8DC8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40013== by 0x1B2CFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40013== by 0x1B669A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40013== by 0x1B6596: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40013== by 0x1B6BA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40013== by 0x1B14F5: main (TestCreatingAndUsingNewCellBasedWritersTutorial.cpp:18) +==40013== +==40013== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40013== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==40013== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40013== by 0xF137822: ??? +==40013== by 0xF13796F: ??? +==40013== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40013== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40013== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40013== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40013== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40013== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40013== by 0x10127D38: PetscInitialize (pinit.c:924) +==40013== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40013== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40013== by 0x1B8DC8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40013== by 0x1B2CFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40013== by 0x1B669A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40013== by 0x1B6596: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40013== by 0x1B6BA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40013== by 0x1B14F5: main (TestCreatingAndUsingNewCellBasedWritersTutorial.cpp:18) +==40013== +==40013== Open file descriptor 113: +==40013== +==40013== +==40013== Open file descriptor 110: +==40013== +==40013== +==40013== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt +==40013== +==40013== +==40013== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40013== +==40013== +==40013== +==40013== HEAP SUMMARY: +==40013== in use at exit: 618,279 bytes in 8,235 blocks +==40013== total heap usage: 2,243,067 allocs, 2,234,832 frees, 1,577,629,957 bytes allocated +==40013== +==40013== LEAK SUMMARY: +==40013== definitely lost: 0 bytes in 0 blocks +==40013== indirectly lost: 0 bytes in 0 blocks +==40013== possibly lost: 0 bytes in 0 blocks +==40013== still reachable: 56 bytes in 3 blocks +==40013== suppressed: 618,223 bytes in 8,232 blocks +==40013== Reachable blocks (those to which a pointer was found) are not shown. +==40013== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40013== +==40013== For lists of detected and suppressed errors, rerun with: -s +==40013== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestCryptCellsGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCryptCellsGenerator_valgrind.txt new file mode 100644 index 000000000..19ed793d4 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCryptCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==40422== Memcheck, a memory error detector +==40422== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40422== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40422== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptCellsGenerator -malloc_debug -malloc_dump -memory_info +==40422== Parent PID: 24036 +==40422== +==40422== +==40422== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40422== Open file descriptor 12: +==40422== at 0x1257007D: pipe (pipe.c:29) +==40422== by 0x1B36D07D: ??? +==40422== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40422== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40422== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40422== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40422== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40422== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40422== by 0x1222A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40422== by 0x11D653: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40422== by 0x11FD06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40422== by 0x11FC01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40422== by 0x120215: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40422== by 0x11BE55: main (TestCryptCellsGenerator.cpp:18) +==40422== +==40422== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40422== at 0x12574A1C: __open_nocancel (open64_nocancel.c:39) +==40422== by 0x124F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40422== by 0x11D75822: ??? +==40422== by 0x11D7596F: ??? +==40422== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40422== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40422== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40422== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40422== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40422== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40422== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40422== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40422== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40422== by 0x1222A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40422== by 0x11D653: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40422== by 0x11FD06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40422== by 0x11FC01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40422== by 0x120215: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40422== by 0x11BE55: main (TestCryptCellsGenerator.cpp:18) +==40422== +==40422== Open file descriptor 113: +==40422== +==40422== +==40422== Open file descriptor 110: +==40422== +==40422== +==40422== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptCellsGenerator_valgrind.txt +==40422== +==40422== +==40422== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40422== +==40422== +==40422== +==40422== HEAP SUMMARY: +==40422== in use at exit: 618,494 bytes in 8,240 blocks +==40422== total heap usage: 87,338 allocs, 79,098 frees, 1,342,271,870 bytes allocated +==40422== +==40422== LEAK SUMMARY: +==40422== definitely lost: 0 bytes in 0 blocks +==40422== indirectly lost: 0 bytes in 0 blocks +==40422== possibly lost: 0 bytes in 0 blocks +==40422== still reachable: 184 bytes in 4 blocks +==40422== suppressed: 618,310 bytes in 8,236 blocks +==40422== Reachable blocks (those to which a pointer was found) are not shown. +==40422== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40422== +==40422== For lists of detected and suppressed errors, rerun with: -s +==40422== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCryptDivisionRules_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCryptDivisionRules_valgrind.txt new file mode 100644 index 000000000..e82eb8e56 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCryptDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==40567== Memcheck, a memory error detector +==40567== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40567== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40567== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptDivisionRules -malloc_debug -malloc_dump -memory_info +==40567== Parent PID: 24036 +==40567== +==40567== +==40567== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40567== Open file descriptor 12: +==40567== at 0x125B207D: pipe (pipe.c:29) +==40567== by 0x1B36D07D: ??? +==40567== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40567== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40567== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40567== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40567== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40567== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40567== by 0x15D2DD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40567== by 0x15795D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40567== by 0x15A6A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40567== by 0x15A542: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40567== by 0x15ABD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40567== by 0x155D85: main (TestCryptDivisionRules.cpp:19) +==40567== +==40567== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40567== at 0x125B6A1C: __open_nocancel (open64_nocancel.c:39) +==40567== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40567== by 0x109F7822: ??? +==40567== by 0x109F796F: ??? +==40567== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40567== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40567== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40567== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40567== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40567== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40567== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40567== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40567== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40567== by 0x15D2DD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40567== by 0x15795D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40567== by 0x15A6A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40567== by 0x15A542: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40567== by 0x15ABD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40567== by 0x155D85: main (TestCryptDivisionRules.cpp:19) +==40567== +==40567== Open file descriptor 113: +==40567== +==40567== +==40567== Open file descriptor 110: +==40567== +==40567== +==40567== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptDivisionRules_valgrind.txt +==40567== +==40567== +==40567== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40567== +==40567== +==40567== +==40567== HEAP SUMMARY: +==40567== in use at exit: 618,382 bytes in 8,240 blocks +==40567== total heap usage: 56,684 allocs, 48,444 frees, 1,339,374,636 bytes allocated +==40567== +==40567== LEAK SUMMARY: +==40567== definitely lost: 0 bytes in 0 blocks +==40567== indirectly lost: 0 bytes in 0 blocks +==40567== possibly lost: 0 bytes in 0 blocks +==40567== still reachable: 72 bytes in 4 blocks +==40567== suppressed: 618,310 bytes in 8,236 blocks +==40567== Reachable blocks (those to which a pointer was found) are not shown. +==40567== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40567== +==40567== For lists of detected and suppressed errors, rerun with: -s +==40567== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCryptProjectionForce_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCryptProjectionForce_valgrind.txt new file mode 100644 index 000000000..30ac27b48 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCryptProjectionForce_valgrind.txt @@ -0,0 +1,73 @@ +==40468== Memcheck, a memory error detector +==40468== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40468== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40468== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptProjectionForce -malloc_debug -malloc_dump -memory_info +==40468== Parent PID: 24036 +==40468== +==40468== +==40468== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40468== Open file descriptor 12: +==40468== at 0x111E407D: pipe (pipe.c:29) +==40468== by 0x1B36F07D: ??? +==40468== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40468== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40468== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40468== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40468== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40468== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40468== by 0x162A3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40468== by 0x15AE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40468== by 0x15DF5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40468== by 0x15DDFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40468== by 0x15E491: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40468== by 0x159295: main (TestCryptProjectionForce.cpp:19) +==40468== +==40468== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40468== at 0x111E8A1C: __open_nocancel (open64_nocancel.c:39) +==40468== by 0x1116CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40468== by 0x109F7822: ??? +==40468== by 0x109F796F: ??? +==40468== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40468== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40468== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40468== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40468== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40468== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40468== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40468== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40468== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40468== by 0x162A3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40468== by 0x15AE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40468== by 0x15DF5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40468== by 0x15DDFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40468== by 0x15E491: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40468== by 0x159295: main (TestCryptProjectionForce.cpp:19) +==40468== +==40468== Open file descriptor 113: +==40468== +==40468== +==40468== Open file descriptor 110: +==40468== +==40468== +==40468== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptProjectionForce_valgrind.txt +==40468== +==40468== +==40468== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40468== +==40468== +==40468== +==40468== HEAP SUMMARY: +==40468== in use at exit: 618,446 bytes in 8,240 blocks +==40468== total heap usage: 88,282 allocs, 80,042 frees, 1,341,616,402 bytes allocated +==40468== +==40468== LEAK SUMMARY: +==40468== definitely lost: 0 bytes in 0 blocks +==40468== indirectly lost: 0 bytes in 0 blocks +==40468== possibly lost: 0 bytes in 0 blocks +==40468== still reachable: 136 bytes in 4 blocks +==40468== suppressed: 618,310 bytes in 8,236 blocks +==40468== Reachable blocks (those to which a pointer was found) are not shown. +==40468== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40468== +==40468== For lists of detected and suppressed errors, rerun with: -s +==40468== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCryptProjectionStatistics_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCryptProjectionStatistics_valgrind.txt new file mode 100644 index 000000000..bca311137 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCryptProjectionStatistics_valgrind.txt @@ -0,0 +1,73 @@ +==40850== Memcheck, a memory error detector +==40850== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40850== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40850== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptProjectionStatistics -malloc_debug -malloc_dump -memory_info +==40850== Parent PID: 24036 +==40850== +==40850== +==40850== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40850== Open file descriptor 12: +==40850== at 0x1265707D: pipe (pipe.c:29) +==40850== by 0x1B36D07D: ??? +==40850== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40850== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40850== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40850== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40850== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40850== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40850== by 0x128443: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40850== by 0x123753: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40850== by 0x125C6C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40850== by 0x125B67: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40850== by 0x12617B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40850== by 0x121F55: main (TestCryptProjectionStatistics.cpp:18) +==40850== +==40850== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40850== at 0x1265BA1C: __open_nocancel (open64_nocancel.c:39) +==40850== by 0x125DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40850== by 0x11D75822: ??? +==40850== by 0x11D7596F: ??? +==40850== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40850== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40850== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40850== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40850== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40850== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40850== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40850== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40850== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40850== by 0x128443: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40850== by 0x123753: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40850== by 0x125C6C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40850== by 0x125B67: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40850== by 0x12617B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40850== by 0x121F55: main (TestCryptProjectionStatistics.cpp:18) +==40850== +==40850== Open file descriptor 113: +==40850== +==40850== +==40850== Open file descriptor 110: +==40850== +==40850== +==40850== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptProjectionStatistics_valgrind.txt +==40850== +==40850== +==40850== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40850== +==40850== +==40850== +==40850== HEAP SUMMARY: +==40850== in use at exit: 618,366 bytes in 8,239 blocks +==40850== total heap usage: 1,083,856 allocs, 1,075,617 frees, 1,401,240,285 bytes allocated +==40850== +==40850== LEAK SUMMARY: +==40850== definitely lost: 0 bytes in 0 blocks +==40850== indirectly lost: 0 bytes in 0 blocks +==40850== possibly lost: 0 bytes in 0 blocks +==40850== still reachable: 56 bytes in 3 blocks +==40850== suppressed: 618,310 bytes in 8,236 blocks +==40850== Reachable blocks (those to which a pointer was found) are not shown. +==40850== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40850== +==40850== For lists of detected and suppressed errors, rerun with: -s +==40850== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCryptSimulation1d_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCryptSimulation1d_valgrind.txt new file mode 100644 index 000000000..c13879a0b --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCryptSimulation1d_valgrind.txt @@ -0,0 +1,73 @@ +==40618== Memcheck, a memory error detector +==40618== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40618== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40618== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation1d -malloc_debug -malloc_dump -memory_info +==40618== Parent PID: 24036 +==40618== +==40618== +==40618== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40618== Open file descriptor 12: +==40618== at 0x125B207D: pipe (pipe.c:29) +==40618== by 0x1B36D07D: ??? +==40618== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40618== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40618== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40618== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40618== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40618== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40618== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40618== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40618== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40618== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40618== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40618== by 0x21B395: main (TestCryptSimulation1d.cpp:18) +==40618== +==40618== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40618== at 0x125B6A1C: __open_nocancel (open64_nocancel.c:39) +==40618== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40618== by 0x109F7822: ??? +==40618== by 0x109F796F: ??? +==40618== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40618== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40618== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40618== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40618== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40618== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40618== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40618== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40618== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40618== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40618== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40618== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40618== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40618== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40618== by 0x21B395: main (TestCryptSimulation1d.cpp:18) +==40618== +==40618== Open file descriptor 113: +==40618== +==40618== +==40618== Open file descriptor 110: +==40618== +==40618== +==40618== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation1d_valgrind.txt +==40618== +==40618== +==40618== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40618== +==40618== +==40618== +==40618== HEAP SUMMARY: +==40618== in use at exit: 618,295 bytes in 8,235 blocks +==40618== total heap usage: 4,119,324 allocs, 4,111,089 frees, 1,972,574,165 bytes allocated +==40618== +==40618== LEAK SUMMARY: +==40618== definitely lost: 0 bytes in 0 blocks +==40618== indirectly lost: 0 bytes in 0 blocks +==40618== possibly lost: 0 bytes in 0 blocks +==40618== still reachable: 56 bytes in 3 blocks +==40618== suppressed: 618,239 bytes in 8,232 blocks +==40618== Reachable blocks (those to which a pointer was found) are not shown. +==40618== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40618== +==40618== For lists of detected and suppressed errors, rerun with: -s +==40618== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..78518f1af --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==40665== Memcheck, a memory error detector +==40665== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40665== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40665== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==40665== Parent PID: 24036 +==40665== +==40665== +==40665== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40665== Open file descriptor 12: +==40665== at 0x111E407D: pipe (pipe.c:29) +==40665== by 0x1B36F07D: ??? +==40665== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40665== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40665== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40665== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40665== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40665== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40665== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40665== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40665== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40665== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40665== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40665== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) +==40665== +==40665== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40665== at 0x111E8A1C: __open_nocancel (open64_nocancel.c:39) +==40665== by 0x1116CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40665== by 0x109F7822: ??? +==40665== by 0x109F796F: ??? +==40665== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40665== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40665== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40665== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40665== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40665== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40665== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40665== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40665== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40665== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40665== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40665== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40665== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40665== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40665== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) +==40665== +==40665== Open file descriptor 113: +==40665== +==40665== +==40665== Open file descriptor 110: +==40665== +==40665== +==40665== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt +==40665== +==40665== +==40665== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40665== +==40665== +==40665== +==40665== HEAP SUMMARY: +==40665== in use at exit: 618,295 bytes in 8,235 blocks +==40665== total heap usage: 6,308,306 allocs, 6,300,071 frees, 2,056,531,729 bytes allocated +==40665== +==40665== LEAK SUMMARY: +==40665== definitely lost: 0 bytes in 0 blocks +==40665== indirectly lost: 0 bytes in 0 blocks +==40665== possibly lost: 0 bytes in 0 blocks +==40665== still reachable: 56 bytes in 3 blocks +==40665== suppressed: 618,239 bytes in 8,232 blocks +==40665== Reachable blocks (those to which a pointer was found) are not shown. +==40665== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40665== +==40665== For lists of detected and suppressed errors, rerun with: -s +==40665== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..86cdc2f7a --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==40694== Memcheck, a memory error detector +==40694== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40694== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40694== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==40694== Parent PID: 24036 +==40694== +==40694== +==40694== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40694== Open file descriptor 12: +==40694== at 0x125B207D: pipe (pipe.c:29) +==40694== by 0x1B36D07D: ??? +==40694== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40694== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40694== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40694== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40694== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40694== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40694== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40694== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40694== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40694== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40694== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40694== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) +==40694== +==40694== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40694== at 0x125B6A1C: __open_nocancel (open64_nocancel.c:39) +==40694== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40694== by 0x109F7822: ??? +==40694== by 0x109F796F: ??? +==40694== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40694== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40694== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40694== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40694== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40694== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40694== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40694== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40694== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40694== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40694== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40694== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40694== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40694== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40694== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) +==40694== +==40694== Open file descriptor 113: +==40694== +==40694== +==40694== Open file descriptor 110: +==40694== +==40694== +==40694== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt +==40694== +==40694== +==40694== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40694== +==40694== +==40694== +==40694== HEAP SUMMARY: +==40694== in use at exit: 618,295 bytes in 8,235 blocks +==40694== total heap usage: 3,713,954 allocs, 3,705,719 frees, 1,620,332,662 bytes allocated +==40694== +==40694== LEAK SUMMARY: +==40694== definitely lost: 0 bytes in 0 blocks +==40694== indirectly lost: 0 bytes in 0 blocks +==40694== possibly lost: 0 bytes in 0 blocks +==40694== still reachable: 56 bytes in 3 blocks +==40694== suppressed: 618,239 bytes in 8,232 blocks +==40694== Reachable blocks (those to which a pointer was found) are not shown. +==40694== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40694== +==40694== For lists of detected and suppressed errors, rerun with: -s +==40694== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestCryptSimulationBoundaryCondition_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCryptSimulationBoundaryCondition_valgrind.txt new file mode 100644 index 000000000..520463450 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCryptSimulationBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==40568== Memcheck, a memory error detector +==40568== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40568== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40568== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulationBoundaryCondition -malloc_debug -malloc_dump -memory_info +==40568== Parent PID: 24036 +==40568== +==40568== +==40568== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40568== Open file descriptor 12: +==40568== at 0x125B207D: pipe (pipe.c:29) +==40568== by 0x1B36D07D: ??? +==40568== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40568== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40568== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40568== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40568== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40568== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40568== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40568== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40568== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40568== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40568== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40568== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) +==40568== +==40568== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40568== at 0x125B6A1C: __open_nocancel (open64_nocancel.c:39) +==40568== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40568== by 0x109F7822: ??? +==40568== by 0x109F796F: ??? +==40568== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40568== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40568== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40568== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40568== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40568== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40568== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40568== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40568== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40568== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40568== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40568== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40568== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40568== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40568== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) +==40568== +==40568== Open file descriptor 113: +==40568== +==40568== +==40568== Open file descriptor 110: +==40568== +==40568== +==40568== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulationBoundaryCondition_valgrind.txt +==40568== +==40568== +==40568== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40568== +==40568== +==40568== +==40568== HEAP SUMMARY: +==40568== in use at exit: 618,446 bytes in 8,240 blocks +==40568== total heap usage: 70,031 allocs, 61,791 frees, 1,343,020,888 bytes allocated +==40568== +==40568== LEAK SUMMARY: +==40568== definitely lost: 0 bytes in 0 blocks +==40568== indirectly lost: 0 bytes in 0 blocks +==40568== possibly lost: 0 bytes in 0 blocks +==40568== still reachable: 136 bytes in 4 blocks +==40568== suppressed: 618,310 bytes in 8,236 blocks +==40568== Reachable blocks (those to which a pointer was found) are not shown. +==40568== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40568== +==40568== For lists of detected and suppressed errors, rerun with: -s +==40568== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestCryptStatistics_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCryptStatistics_valgrind.txt new file mode 100644 index 000000000..a04b67467 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCryptStatistics_valgrind.txt @@ -0,0 +1,73 @@ +==40921== Memcheck, a memory error detector +==40921== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40921== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40921== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info +==40921== Parent PID: 24036 +==40921== +==40921== +==40921== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40921== Open file descriptor 12: +==40921== at 0x1270C07D: pipe (pipe.c:29) +==40921== by 0x1B36F07D: ??? +==40921== by 0x164D44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40921== by 0x11F2D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40921== by 0x11EC6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40921== by 0x10BBDD38: PetscInitialize (pinit.c:924) +==40921== by 0x10A2F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40921== by 0x10A2F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40921== by 0x1BB797: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40921== by 0x1B35DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40921== by 0x1B6DC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40921== by 0x1B6CBD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40921== by 0x1B72D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40921== by 0x1B1DD5: main (TestCryptStatistics.cpp:18) +==40921== +==40921== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40921== at 0x12710A1C: __open_nocancel (open64_nocancel.c:39) +==40921== by 0x12694BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40921== by 0x10A6A822: ??? +==40921== by 0x10A6A96F: ??? +==40921== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40921== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40921== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40921== by 0x164D42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40921== by 0x11F2D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40921== by 0x11EC6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40921== by 0x10BBDD38: PetscInitialize (pinit.c:924) +==40921== by 0x10A2F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40921== by 0x10A2F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40921== by 0x1BB797: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40921== by 0x1B35DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40921== by 0x1B6DC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40921== by 0x1B6CBD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40921== by 0x1B72D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40921== by 0x1B1DD5: main (TestCryptStatistics.cpp:18) +==40921== +==40921== Open file descriptor 113: +==40921== +==40921== +==40921== Open file descriptor 110: +==40921== +==40921== +==40921== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptStatistics_valgrind.txt +==40921== +==40921== +==40921== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40921== +==40921== +==40921== +==40921== HEAP SUMMARY: +==40921== in use at exit: 618,263 bytes in 8,234 blocks +==40921== total heap usage: 1,798,656 allocs, 1,790,422 frees, 1,443,890,114 bytes allocated +==40921== +==40921== LEAK SUMMARY: +==40921== definitely lost: 0 bytes in 0 blocks +==40921== indirectly lost: 0 bytes in 0 blocks +==40921== possibly lost: 0 bytes in 0 blocks +==40921== still reachable: 24 bytes in 2 blocks +==40921== suppressed: 618,239 bytes in 8,232 blocks +==40921== Reachable blocks (those to which a pointer was found) are not shown. +==40921== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40921== +==40921== For lists of detected and suppressed errors, rerun with: -s +==40921== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestCvodeAdaptor_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCvodeAdaptor_valgrind.txt new file mode 100644 index 000000000..64fd415ac --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCvodeAdaptor_valgrind.txt @@ -0,0 +1,73 @@ +==24927== Memcheck, a memory error detector +==24927== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24927== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24927== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestCvodeAdaptor -malloc_debug -malloc_dump -memory_info +==24927== Parent PID: 24036 +==24927== +==24927== +==24927== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24927== Open file descriptor 12: +==24927== at 0x4F5207D: pipe (pipe.c:29) +==24927== by 0xB1E607D: ??? +==24927== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24927== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24927== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24927== by 0x5308D38: PetscInitialize (pinit.c:924) +==24927== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24927== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24927== by 0x126E96: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24927== by 0x1215DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24927== by 0x1243B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24927== by 0x124254: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24927== by 0x1248EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24927== by 0x11F185: main (TestCvodeAdaptor.cpp:19) +==24927== +==24927== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24927== at 0x4F56A1C: __open_nocancel (open64_nocancel.c:39) +==24927== by 0x4EDABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24927== by 0x4B77822: ??? +==24927== by 0x4B7796F: ??? +==24927== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24927== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24927== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24927== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24927== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24927== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24927== by 0x5308D38: PetscInitialize (pinit.c:924) +==24927== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24927== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24927== by 0x126E96: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24927== by 0x1215DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24927== by 0x1243B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24927== by 0x124254: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24927== by 0x1248EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24927== by 0x11F185: main (TestCvodeAdaptor.cpp:19) +==24927== +==24927== Open file descriptor 113: +==24927== +==24927== +==24927== Open file descriptor 110: +==24927== +==24927== +==24927== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeAdaptor_valgrind.txt +==24927== +==24927== +==24927== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24927== +==24927== +==24927== +==24927== HEAP SUMMARY: +==24927== in use at exit: 617,902 bytes in 8,238 blocks +==24927== total heap usage: 49,832 allocs, 41,594 frees, 1,338,663,341 bytes allocated +==24927== +==24927== LEAK SUMMARY: +==24927== definitely lost: 0 bytes in 0 blocks +==24927== indirectly lost: 0 bytes in 0 blocks +==24927== possibly lost: 0 bytes in 0 blocks +==24927== still reachable: 24 bytes in 2 blocks +==24927== suppressed: 617,878 bytes in 8,236 blocks +==24927== Reachable blocks (those to which a pointer was found) are not shown. +==24927== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24927== +==24927== For lists of detected and suppressed errors, rerun with: -s +==24927== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCvodeCellsWithDataClamp_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCvodeCellsWithDataClamp_valgrind.txt new file mode 100644 index 000000000..e87bdd9d1 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCvodeCellsWithDataClamp_valgrind.txt @@ -0,0 +1,73 @@ +==41487== Memcheck, a memory error detector +==41487== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41487== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41487== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeCellsWithDataClamp -malloc_debug -malloc_dump -memory_info +==41487== Parent PID: 24036 +==41487== +==41487== +==41487== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41487== Open file descriptor 12: +==41487== at 0x9D8E07D: pipe (pipe.c:29) +==41487== by 0x1432407D: ??? +==41487== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41487== by 0x98DA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41487== by 0x9873D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41487== by 0x856AD38: PetscInitialize (pinit.c:924) +==41487== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41487== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41487== by 0x12948D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41487== by 0x124351: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41487== by 0x126E16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41487== by 0x126CB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41487== by 0x12734D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41487== by 0x1222A5: main (TestCvodeCellsWithDataClamp.cpp:19) +==41487== +==41487== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41487== at 0x9D92A1C: __open_nocancel (open64_nocancel.c:39) +==41487== by 0x9D16BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41487== by 0x8417822: ??? +==41487== by 0x841796F: ??? +==41487== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41487== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41487== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41487== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41487== by 0x98DA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41487== by 0x9873D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41487== by 0x856AD38: PetscInitialize (pinit.c:924) +==41487== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41487== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41487== by 0x12948D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41487== by 0x124351: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41487== by 0x126E16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41487== by 0x126CB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41487== by 0x12734D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41487== by 0x1222A5: main (TestCvodeCellsWithDataClamp.cpp:19) +==41487== +==41487== Open file descriptor 113: +==41487== +==41487== +==41487== Open file descriptor 110: +==41487== +==41487== +==41487== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeCellsWithDataClamp_valgrind.txt +==41487== +==41487== +==41487== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41487== +==41487== +==41487== +==41487== HEAP SUMMARY: +==41487== in use at exit: 624,618 bytes in 8,243 blocks +==41487== total heap usage: 102,616 allocs, 94,373 frees, 1,481,816,585 bytes allocated +==41487== +==41487== LEAK SUMMARY: +==41487== definitely lost: 0 bytes in 0 blocks +==41487== indirectly lost: 0 bytes in 0 blocks +==41487== possibly lost: 0 bytes in 0 blocks +==41487== still reachable: 6,379 bytes in 11 blocks +==41487== suppressed: 618,239 bytes in 8,232 blocks +==41487== Reachable blocks (those to which a pointer was found) are not shown. +==41487== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41487== +==41487== For lists of detected and suppressed errors, rerun with: -s +==41487== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestCvodeCells_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCvodeCells_valgrind.txt new file mode 100644 index 000000000..0b22f3474 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCvodeCells_valgrind.txt @@ -0,0 +1,73 @@ +==41486== Memcheck, a memory error detector +==41486== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41486== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41486== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeCells -malloc_debug -malloc_dump -memory_info +==41486== Parent PID: 24036 +==41486== +==41486== +==41486== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41486== Open file descriptor 12: +==41486== at 0x9D1A07D: pipe (pipe.c:29) +==41486== by 0x1432407D: ??? +==41486== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41486== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41486== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41486== by 0x85DDD38: PetscInitialize (pinit.c:924) +==41486== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41486== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41486== by 0x1353CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41486== by 0x12FB8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41486== by 0x132882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41486== by 0x132722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41486== by 0x132DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41486== by 0x12AB65: main (TestCvodeCells.cpp:19) +==41486== +==41486== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41486== at 0x9D1EA1C: __open_nocancel (open64_nocancel.c:39) +==41486== by 0x9CA2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41486== by 0x848A822: ??? +==41486== by 0x848A96F: ??? +==41486== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41486== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41486== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41486== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41486== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41486== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41486== by 0x85DDD38: PetscInitialize (pinit.c:924) +==41486== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41486== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41486== by 0x1353CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41486== by 0x12FB8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41486== by 0x132882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41486== by 0x132722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41486== by 0x132DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41486== by 0x12AB65: main (TestCvodeCells.cpp:19) +==41486== +==41486== Open file descriptor 113: +==41486== +==41486== +==41486== Open file descriptor 110: +==41486== +==41486== +==41486== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeCells_valgrind.txt +==41486== +==41486== +==41486== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41486== +==41486== +==41486== +==41486== HEAP SUMMARY: +==41486== in use at exit: 620,034 bytes in 8,238 blocks +==41486== total heap usage: 231,022 allocs, 222,784 frees, 1,363,913,093 bytes allocated +==41486== +==41486== LEAK SUMMARY: +==41486== definitely lost: 0 bytes in 0 blocks +==41486== indirectly lost: 0 bytes in 0 blocks +==41486== possibly lost: 0 bytes in 0 blocks +==41486== still reachable: 1,795 bytes in 6 blocks +==41486== suppressed: 618,239 bytes in 8,232 blocks +==41486== Reachable blocks (those to which a pointer was found) are not shown. +==41486== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41486== +==41486== For lists of detected and suppressed errors, rerun with: -s +==41486== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestCvodeWithJacobian_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCvodeWithJacobian_valgrind.txt new file mode 100644 index 000000000..4b48168d3 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCvodeWithJacobian_valgrind.txt @@ -0,0 +1,73 @@ +==41695== Memcheck, a memory error detector +==41695== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41695== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41695== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeWithJacobian -malloc_debug -malloc_dump -memory_info +==41695== Parent PID: 24036 +==41695== +==41695== +==41695== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41695== Open file descriptor 12: +==41695== at 0x9C6507D: pipe (pipe.c:29) +==41695== by 0x1432407D: ??? +==41695== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41695== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41695== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41695== by 0x8505D38: PetscInitialize (pinit.c:924) +==41695== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41695== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41695== by 0x117769: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41695== by 0x1133B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41695== by 0x1155A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41695== by 0x11549E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41695== by 0x115AB1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41695== by 0x111BB5: main (TestCvodeWithJacobian.cpp:18) +==41695== +==41695== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41695== at 0x9C69A1C: __open_nocancel (open64_nocancel.c:39) +==41695== by 0x9BEDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41695== by 0x9795822: ??? +==41695== by 0x979596F: ??? +==41695== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41695== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41695== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41695== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41695== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41695== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41695== by 0x8505D38: PetscInitialize (pinit.c:924) +==41695== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41695== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41695== by 0x117769: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41695== by 0x1133B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41695== by 0x1155A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41695== by 0x11549E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41695== by 0x115AB1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41695== by 0x111BB5: main (TestCvodeWithJacobian.cpp:18) +==41695== +==41695== Open file descriptor 113: +==41695== +==41695== +==41695== Open file descriptor 110: +==41695== +==41695== +==41695== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeWithJacobian_valgrind.txt +==41695== +==41695== +==41695== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41695== +==41695== +==41695== +==41695== HEAP SUMMARY: +==41695== in use at exit: 618,263 bytes in 8,234 blocks +==41695== total heap usage: 74,028 allocs, 65,794 frees, 1,342,639,666 bytes allocated +==41695== +==41695== LEAK SUMMARY: +==41695== definitely lost: 0 bytes in 0 blocks +==41695== indirectly lost: 0 bytes in 0 blocks +==41695== possibly lost: 0 bytes in 0 blocks +==41695== still reachable: 24 bytes in 2 blocks +==41695== suppressed: 618,239 bytes in 8,232 blocks +==41695== Reachable blocks (those to which a pointer was found) are not shown. +==41695== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41695== +==41695== For lists of detected and suppressed errors, rerun with: -s +==41695== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestCwd_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCwd_valgrind.txt new file mode 100644 index 000000000..7793cf5f5 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCwd_valgrind.txt @@ -0,0 +1,73 @@ +==24068== Memcheck, a memory error detector +==24068== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24068== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24068== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCwd -malloc_debug -malloc_dump -memory_info +==24068== Parent PID: 24036 +==24068== +==24068== +==24068== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24068== Open file descriptor 12: +==24068== at 0x616907D: pipe (pipe.c:29) +==24068== by 0xAEA507D: ??? +==24068== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24068== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24068== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24068== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24068== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24068== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24068== by 0x1130E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24068== by 0x10EFB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24068== by 0x1111A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24068== by 0x11109E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24068== by 0x1116B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24068== by 0x10D7B5: main (TestCwd.cpp:18) +==24068== +==24068== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24068== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24068== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24068== by 0x5CB3822: ??? +==24068== by 0x5CB396F: ??? +==24068== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24068== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24068== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24068== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24068== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24068== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24068== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24068== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24068== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24068== by 0x1130E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24068== by 0x10EFB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24068== by 0x1111A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24068== by 0x11109E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24068== by 0x1116B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24068== by 0x10D7B5: main (TestCwd.cpp:18) +==24068== +==24068== Open file descriptor 113: +==24068== +==24068== +==24068== Open file descriptor 110: +==24068== +==24068== +==24068== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCwd_valgrind.txt +==24068== +==24068== +==24068== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24068== +==24068== +==24068== +==24068== HEAP SUMMARY: +==24068== in use at exit: 617,838 bytes in 8,238 blocks +==24068== total heap usage: 44,920 allocs, 36,682 frees, 1,338,164,854 bytes allocated +==24068== +==24068== LEAK SUMMARY: +==24068== definitely lost: 0 bytes in 0 blocks +==24068== indirectly lost: 0 bytes in 0 blocks +==24068== possibly lost: 0 bytes in 0 blocks +==24068== still reachable: 24 bytes in 2 blocks +==24068== suppressed: 617,814 bytes in 8,236 blocks +==24068== Reachable blocks (those to which a pointer was found) are not shown. +==24068== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24068== +==24068== For lists of detected and suppressed errors, rerun with: -s +==24068== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCylindrical2dMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCylindrical2dMesh_valgrind.txt new file mode 100644 index 000000000..c496adc85 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCylindrical2dMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24534== Memcheck, a memory error detector +==24534== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24534== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24534== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dMesh -malloc_debug -malloc_dump -memory_info +==24534== Parent PID: 24036 +==24534== +==24534== +==24534== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24534== Open file descriptor 12: +==24534== at 0x823407D: pipe (pipe.c:29) +==24534== by 0x100C507D: ??? +==24534== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24534== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24534== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24534== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24534== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24534== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24534== by 0x12A575: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24534== by 0x124FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24534== by 0x127D3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24534== by 0x127BDF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24534== by 0x128275: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24534== by 0x123425: main (TestCylindrical2dMesh.cpp:19) +==24534== +==24534== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24534== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24534== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24534== by 0x6590822: ??? +==24534== by 0x659096F: ??? +==24534== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24534== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24534== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24534== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24534== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24534== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24534== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24534== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24534== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24534== by 0x12A575: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24534== by 0x124FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24534== by 0x127D3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24534== by 0x127BDF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24534== by 0x128275: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24534== by 0x123425: main (TestCylindrical2dMesh.cpp:19) +==24534== +==24534== Open file descriptor 113: +==24534== +==24534== +==24534== Open file descriptor 110: +==24534== +==24534== +==24534== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dMesh_valgrind.txt +==24534== +==24534== +==24534== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24534== +==24534== +==24534== +==24534== HEAP SUMMARY: +==24534== in use at exit: 618,222 bytes in 8,238 blocks +==24534== total heap usage: 165,000 allocs, 156,762 frees, 1,356,835,235 bytes allocated +==24534== +==24534== LEAK SUMMARY: +==24534== definitely lost: 0 bytes in 0 blocks +==24534== indirectly lost: 0 bytes in 0 blocks +==24534== possibly lost: 0 bytes in 0 blocks +==24534== still reachable: 24 bytes in 2 blocks +==24534== suppressed: 618,198 bytes in 8,236 blocks +==24534== Reachable blocks (those to which a pointer was found) are not shown. +==24534== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24534== +==24534== For lists of detected and suppressed errors, rerun with: -s +==24534== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCylindrical2dNodesOnlyMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCylindrical2dNodesOnlyMesh_valgrind.txt new file mode 100644 index 000000000..1fa424110 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCylindrical2dNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24546== Memcheck, a memory error detector +==24546== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24546== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24546== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==24546== Parent PID: 24036 +==24546== +==24546== +==24546== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24546== Open file descriptor 12: +==24546== at 0x6D7D07D: pipe (pipe.c:29) +==24546== by 0x100C507D: ??? +==24546== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24546== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24546== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24546== by 0x7017D38: PetscInitialize (pinit.c:924) +==24546== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24546== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24546== by 0x126F1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24546== by 0x121B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24546== by 0x1248C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24546== by 0x124768: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24546== by 0x124DFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24546== by 0x11FFC5: main (TestCylindrical2dNodesOnlyMesh.cpp:19) +==24546== +==24546== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24546== at 0x6D81A1C: __open_nocancel (open64_nocancel.c:39) +==24546== by 0x6D05BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24546== by 0x6590822: ??? +==24546== by 0x659096F: ??? +==24546== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24546== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24546== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24546== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24546== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24546== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24546== by 0x7017D38: PetscInitialize (pinit.c:924) +==24546== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24546== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24546== by 0x126F1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24546== by 0x121B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24546== by 0x1248C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24546== by 0x124768: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24546== by 0x124DFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24546== by 0x11FFC5: main (TestCylindrical2dNodesOnlyMesh.cpp:19) +==24546== +==24546== Open file descriptor 113: +==24546== +==24546== +==24546== Open file descriptor 110: +==24546== +==24546== +==24546== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dNodesOnlyMesh_valgrind.txt +==24546== +==24546== +==24546== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24546== +==24546== +==24546== +==24546== HEAP SUMMARY: +==24546== in use at exit: 618,222 bytes in 8,238 blocks +==24546== total heap usage: 58,516 allocs, 50,278 frees, 1,341,296,520 bytes allocated +==24546== +==24546== LEAK SUMMARY: +==24546== definitely lost: 0 bytes in 0 blocks +==24546== indirectly lost: 0 bytes in 0 blocks +==24546== possibly lost: 0 bytes in 0 blocks +==24546== still reachable: 24 bytes in 2 blocks +==24546== suppressed: 618,198 bytes in 8,236 blocks +==24546== Reachable blocks (those to which a pointer was found) are not shown. +==24546== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24546== +==24546== For lists of detected and suppressed errors, rerun with: -s +==24546== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCylindrical2dVertexMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCylindrical2dVertexMesh_valgrind.txt new file mode 100644 index 000000000..164d13eb7 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCylindrical2dVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24671== Memcheck, a memory error detector +==24671== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24671== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24671== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dVertexMesh -malloc_debug -malloc_dump -memory_info +==24671== Parent PID: 24036 +==24671== +==24671== +==24671== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24671== Open file descriptor 12: +==24671== at 0x823407D: pipe (pipe.c:29) +==24671== by 0x100C507D: ??? +==24671== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24671== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24671== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24671== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24671== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24671== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24671== by 0x129413: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24671== by 0x123FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24671== by 0x126C38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24671== by 0x126AD9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24671== by 0x12716F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24671== by 0x1223E5: main (TestCylindrical2dVertexMesh.cpp:19) +==24671== +==24671== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24671== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24671== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24671== by 0x6590822: ??? +==24671== by 0x659096F: ??? +==24671== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24671== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24671== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24671== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24671== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24671== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24671== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24671== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24671== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24671== by 0x129413: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24671== by 0x123FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24671== by 0x126C38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24671== by 0x126AD9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24671== by 0x12716F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24671== by 0x1223E5: main (TestCylindrical2dVertexMesh.cpp:19) +==24671== +==24671== Open file descriptor 113: +==24671== +==24671== +==24671== Open file descriptor 110: +==24671== +==24671== +==24671== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dVertexMesh_valgrind.txt +==24671== +==24671== +==24671== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24671== +==24671== +==24671== +==24671== HEAP SUMMARY: +==24671== in use at exit: 618,222 bytes in 8,238 blocks +==24671== total heap usage: 152,180 allocs, 143,942 frees, 1,348,597,838 bytes allocated +==24671== +==24671== LEAK SUMMARY: +==24671== definitely lost: 0 bytes in 0 blocks +==24671== indirectly lost: 0 bytes in 0 blocks +==24671== possibly lost: 0 bytes in 0 blocks +==24671== still reachable: 24 bytes in 2 blocks +==24671== suppressed: 618,198 bytes in 8,236 blocks +==24671== Reachable blocks (those to which a pointer was found) are not shown. +==24671== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24671== +==24671== For lists of detected and suppressed errors, rerun with: -s +==24671== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCylindricalHoneycombMeshGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCylindricalHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..792250a7e --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCylindricalHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24555== Memcheck, a memory error detector +==24555== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24555== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24555== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindricalHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24555== Parent PID: 24036 +==24555== +==24555== +==24555== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24555== Open file descriptor 12: +==24555== at 0x810907D: pipe (pipe.c:29) +==24555== by 0x100C307D: ??? +==24555== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24555== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24555== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24555== by 0x667ED38: PetscInitialize (pinit.c:924) +==24555== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24555== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24555== by 0x11A3C5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24555== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24555== by 0x1181AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24555== by 0x11804C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24555== by 0x1186E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24555== by 0x113AF5: main (TestCylindricalHoneycombMeshGenerator.cpp:19) +==24555== +==24555== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24555== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24555== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24555== by 0x790E822: ??? +==24555== by 0x790E96F: ??? +==24555== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24555== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24555== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24555== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24555== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24555== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24555== by 0x667ED38: PetscInitialize (pinit.c:924) +==24555== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24555== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24555== by 0x11A3C5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24555== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24555== by 0x1181AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24555== by 0x11804C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24555== by 0x1186E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24555== by 0x113AF5: main (TestCylindricalHoneycombMeshGenerator.cpp:19) +==24555== +==24555== Open file descriptor 113: +==24555== +==24555== +==24555== Open file descriptor 110: +==24555== +==24555== +==24555== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindricalHoneycombMeshGenerator_valgrind.txt +==24555== +==24555== +==24555== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24555== +==24555== +==24555== +==24555== HEAP SUMMARY: +==24555== in use at exit: 618,222 bytes in 8,238 blocks +==24555== total heap usage: 92,046 allocs, 83,808 frees, 1,341,718,662 bytes allocated +==24555== +==24555== LEAK SUMMARY: +==24555== definitely lost: 0 bytes in 0 blocks +==24555== indirectly lost: 0 bytes in 0 blocks +==24555== possibly lost: 0 bytes in 0 blocks +==24555== still reachable: 24 bytes in 2 blocks +==24555== suppressed: 618,198 bytes in 8,236 blocks +==24555== Reachable blocks (those to which a pointer was found) are not shown. +==24555== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24555== +==24555== For lists of detected and suppressed errors, rerun with: -s +==24555== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..8f19f839e --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24673== Memcheck, a memory error detector +==24673== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24673== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24673== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindricalHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24673== Parent PID: 24036 +==24673== +==24673== +==24673== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24673== Open file descriptor 12: +==24673== at 0x810907D: pipe (pipe.c:29) +==24673== by 0x100C307D: ??? +==24673== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24673== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24673== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24673== by 0x667ED38: PetscInitialize (pinit.c:924) +==24673== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24673== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24673== by 0x11A15D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24673== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24673== by 0x1162D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24673== by 0x116176: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24673== by 0x11680D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24673== by 0x111D75: main (TestCylindricalHoneycombVertexMeshGenerator.cpp:19) +==24673== +==24673== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24673== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24673== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24673== by 0x790E822: ??? +==24673== by 0x790E96F: ??? +==24673== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24673== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24673== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24673== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24673== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24673== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24673== by 0x667ED38: PetscInitialize (pinit.c:924) +==24673== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24673== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24673== by 0x11A15D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24673== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24673== by 0x1162D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24673== by 0x116176: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24673== by 0x11680D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24673== by 0x111D75: main (TestCylindricalHoneycombVertexMeshGenerator.cpp:19) +==24673== +==24673== Open file descriptor 113: +==24673== +==24673== +==24673== Open file descriptor 110: +==24673== +==24673== +==24673== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt +==24673== +==24673== +==24673== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24673== +==24673== +==24673== +==24673== HEAP SUMMARY: +==24673== in use at exit: 618,222 bytes in 8,238 blocks +==24673== total heap usage: 50,610 allocs, 42,372 frees, 1,338,861,885 bytes allocated +==24673== +==24673== LEAK SUMMARY: +==24673== definitely lost: 0 bytes in 0 blocks +==24673== indirectly lost: 0 bytes in 0 blocks +==24673== possibly lost: 0 bytes in 0 blocks +==24673== still reachable: 24 bytes in 2 blocks +==24673== suppressed: 618,198 bytes in 8,236 blocks +==24673== Reachable blocks (those to which a pointer was found) are not shown. +==24673== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24673== +==24673== For lists of detected and suppressed errors, rerun with: -s +==24673== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestDebug_valgrind.txt b/log-files/2024-09-20_21-41-09/TestDebug_valgrind.txt new file mode 100644 index 000000000..65cad80cc --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestDebug_valgrind.txt @@ -0,0 +1,73 @@ +==24094== Memcheck, a memory error detector +==24094== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24094== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24094== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestDebug -malloc_debug -malloc_dump -memory_info +==24094== Parent PID: 24036 +==24094== +==24094== +==24094== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24094== Open file descriptor 12: +==24094== at 0x4CB207D: pipe (pipe.c:29) +==24094== by 0xAEA507D: ??? +==24094== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24094== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24094== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24094== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24094== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24094== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24094== by 0x112F42: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24094== by 0x10EE33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24094== by 0x11100C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24094== by 0x110F08: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24094== by 0x11151B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24094== by 0x10D635: main (TestDebug.cpp:18) +==24094== +==24094== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24094== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24094== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24094== by 0x4935822: ??? +==24094== by 0x493596F: ??? +==24094== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24094== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24094== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24094== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24094== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24094== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24094== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24094== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24094== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24094== by 0x112F42: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24094== by 0x10EE33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24094== by 0x11100C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24094== by 0x110F08: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24094== by 0x11151B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24094== by 0x10D635: main (TestDebug.cpp:18) +==24094== +==24094== Open file descriptor 113: +==24094== +==24094== +==24094== Open file descriptor 110: +==24094== +==24094== +==24094== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDebug_valgrind.txt +==24094== +==24094== +==24094== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24094== +==24094== +==24094== +==24094== HEAP SUMMARY: +==24094== in use at exit: 617,838 bytes in 8,238 blocks +==24094== total heap usage: 44,920 allocs, 36,682 frees, 1,340,566,596 bytes allocated +==24094== +==24094== LEAK SUMMARY: +==24094== definitely lost: 0 bytes in 0 blocks +==24094== indirectly lost: 0 bytes in 0 blocks +==24094== possibly lost: 0 bytes in 0 blocks +==24094== still reachable: 24 bytes in 2 blocks +==24094== suppressed: 617,814 bytes in 8,236 blocks +==24094== Reachable blocks (those to which a pointer was found) are not shown. +==24094== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24094== +==24094== For lists of detected and suppressed errors, rerun with: -s +==24094== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestDeltaNotchModifier_valgrind.txt b/log-files/2024-09-20_21-41-09/TestDeltaNotchModifier_valgrind.txt new file mode 100644 index 000000000..89db929de --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestDeltaNotchModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26240== Memcheck, a memory error detector +==26240== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26240== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26240== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDeltaNotchModifier -malloc_debug -malloc_dump -memory_info +==26240== Parent PID: 24036 +==26240== +==26240== +==26240== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26240== Open file descriptor 12: +==26240== at 0xF83B07D: pipe (pipe.c:29) +==26240== by 0x196AD07D: ??? +==26240== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26240== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26240== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26240== by 0x10127D38: PetscInitialize (pinit.c:924) +==26240== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26240== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26240== by 0x208508: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26240== by 0x1FFF99: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26240== by 0x203992: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26240== by 0x203832: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26240== by 0x203EC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26240== by 0x1FE3B5: main (TestDeltaNotchModifier.cpp:19) +==26240== +==26240== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26240== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==26240== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26240== by 0xF137822: ??? +==26240== by 0xF13796F: ??? +==26240== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26240== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26240== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26240== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26240== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26240== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26240== by 0x10127D38: PetscInitialize (pinit.c:924) +==26240== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26240== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26240== by 0x208508: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26240== by 0x1FFF99: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26240== by 0x203992: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26240== by 0x203832: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26240== by 0x203EC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26240== by 0x1FE3B5: main (TestDeltaNotchModifier.cpp:19) +==26240== +==26240== Open file descriptor 113: +==26240== +==26240== +==26240== Open file descriptor 110: +==26240== +==26240== +==26240== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDeltaNotchModifier_valgrind.txt +==26240== +==26240== +==26240== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26240== +==26240== +==26240== +==26240== HEAP SUMMARY: +==26240== in use at exit: 618,279 bytes in 8,235 blocks +==26240== total heap usage: 5,565,414 allocs, 5,557,179 frees, 8,883,972,797 bytes allocated +==26240== +==26240== LEAK SUMMARY: +==26240== definitely lost: 0 bytes in 0 blocks +==26240== indirectly lost: 0 bytes in 0 blocks +==26240== possibly lost: 0 bytes in 0 blocks +==26240== still reachable: 56 bytes in 3 blocks +==26240== suppressed: 618,223 bytes in 8,232 blocks +==26240== Reachable blocks (those to which a pointer was found) are not shown. +==26240== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26240== +==26240== For lists of detected and suppressed errors, rerun with: -s +==26240== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestDeltaNotchOdeSystem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestDeltaNotchOdeSystem_valgrind.txt new file mode 100644 index 000000000..c772ffae0 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestDeltaNotchOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25829== Memcheck, a memory error detector +==25829== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25829== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25829== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDeltaNotchOdeSystem -malloc_debug -malloc_dump -memory_info +==25829== Parent PID: 24036 +==25829== +==25829== +==25829== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25829== Open file descriptor 12: +==25829== at 0xEF9407D: pipe (pipe.c:29) +==25829== by 0x196AC07D: ??? +==25829== by 0x13C514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25829== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25829== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25829== by 0xD871D38: PetscInitialize (pinit.c:924) +==25829== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25829== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25829== by 0x123193: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25829== by 0x11E6C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25829== by 0x120CDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25829== by 0x120BD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25829== by 0x1211EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25829== by 0x11CEC5: main (TestDeltaNotchOdeSystem.cpp:18) +==25829== +==25829== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25829== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25829== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25829== by 0xD71E822: ??? +==25829== by 0xD71E96F: ??? +==25829== by 0x13CF66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25829== by 0x13CF6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25829== by 0x13CAC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25829== by 0x13C512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25829== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25829== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25829== by 0xD871D38: PetscInitialize (pinit.c:924) +==25829== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25829== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25829== by 0x123193: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25829== by 0x11E6C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25829== by 0x120CDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25829== by 0x120BD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25829== by 0x1211EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25829== by 0x11CEC5: main (TestDeltaNotchOdeSystem.cpp:18) +==25829== +==25829== Open file descriptor 113: +==25829== +==25829== +==25829== Open file descriptor 110: +==25829== +==25829== +==25829== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDeltaNotchOdeSystem_valgrind.txt +==25829== +==25829== +==25829== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25829== +==25829== +==25829== +==25829== HEAP SUMMARY: +==25829== in use at exit: 618,318 bytes in 8,238 blocks +==25829== total heap usage: 53,417 allocs, 45,179 frees, 1,338,943,072 bytes allocated +==25829== +==25829== LEAK SUMMARY: +==25829== definitely lost: 0 bytes in 0 blocks +==25829== indirectly lost: 0 bytes in 0 blocks +==25829== possibly lost: 0 bytes in 0 blocks +==25829== still reachable: 24 bytes in 2 blocks +==25829== suppressed: 618,294 bytes in 8,236 blocks +==25829== Reachable blocks (those to which a pointer was found) are not shown. +==25829== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25829== +==25829== For lists of detected and suppressed errors, rerun with: -s +==25829== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestDiscreteSystemForceCalculator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestDiscreteSystemForceCalculator_valgrind.txt new file mode 100644 index 000000000..faa8eb8a6 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestDiscreteSystemForceCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==26026== Memcheck, a memory error detector +==26026== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26026== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26026== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDiscreteSystemForceCalculator -malloc_debug -malloc_dump -memory_info +==26026== Parent PID: 24036 +==26026== +==26026== +==26026== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26026== Open file descriptor 12: +==26026== at 0x10CB007D: pipe (pipe.c:29) +==26026== by 0x196AD07D: ??? +==26026== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26026== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26026== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26026== by 0xF225D38: PetscInitialize (pinit.c:924) +==26026== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26026== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26026== by 0x12A32F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26026== by 0x123F2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26026== by 0x1269BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26026== by 0x12685E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26026== by 0x126EF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26026== by 0x122355: main (TestDiscreteSystemForceCalculator.cpp:19) +==26026== +==26026== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26026== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==26026== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26026== by 0x104B5822: ??? +==26026== by 0x104B596F: ??? +==26026== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26026== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26026== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26026== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26026== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26026== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26026== by 0xF225D38: PetscInitialize (pinit.c:924) +==26026== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26026== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26026== by 0x12A32F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26026== by 0x123F2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26026== by 0x1269BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26026== by 0x12685E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26026== by 0x126EF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26026== by 0x122355: main (TestDiscreteSystemForceCalculator.cpp:19) +==26026== +==26026== Open file descriptor 113: +==26026== +==26026== +==26026== Open file descriptor 110: +==26026== +==26026== +==26026== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDiscreteSystemForceCalculator_valgrind.txt +==26026== +==26026== +==26026== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26026== +==26026== +==26026== +==26026== HEAP SUMMARY: +==26026== in use at exit: 618,350 bytes in 8,239 blocks +==26026== total heap usage: 123,060 allocs, 114,821 frees, 1,345,486,057 bytes allocated +==26026== +==26026== LEAK SUMMARY: +==26026== definitely lost: 0 bytes in 0 blocks +==26026== indirectly lost: 0 bytes in 0 blocks +==26026== possibly lost: 0 bytes in 0 blocks +==26026== still reachable: 56 bytes in 3 blocks +==26026== suppressed: 618,294 bytes in 8,236 blocks +==26026== Reachable blocks (those to which a pointer was found) are not shown. +==26026== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26026== +==26026== For lists of detected and suppressed errors, rerun with: -s +==26026== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestDistanceMapCalculator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestDistanceMapCalculator_valgrind.txt new file mode 100644 index 000000000..c716c2a19 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestDistanceMapCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==24632== Memcheck, a memory error detector +==24632== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24632== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24632== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistanceMapCalculator -malloc_debug -malloc_dump -memory_info +==24632== Parent PID: 24036 +==24632== +==24632== +==24632== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24632== Open file descriptor 12: +==24632== at 0x6D3B07D: pipe (pipe.c:29) +==24632== by 0x100C507D: ??? +==24632== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24632== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24632== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24632== by 0x7017D38: PetscInitialize (pinit.c:924) +==24632== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24632== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24632== by 0x121308: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24632== by 0x11C90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24632== by 0x11F030: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24632== by 0x11EED0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24632== by 0x11F567: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24632== by 0x11AD35: main (TestDistanceMapCalculator.cpp:19) +==24632== +==24632== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24632== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24632== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24632== by 0x6590822: ??? +==24632== by 0x659096F: ??? +==24632== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24632== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24632== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24632== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24632== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24632== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24632== by 0x7017D38: PetscInitialize (pinit.c:924) +==24632== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24632== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24632== by 0x121308: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24632== by 0x11C90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24632== by 0x11F030: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24632== by 0x11EED0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24632== by 0x11F567: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24632== by 0x11AD35: main (TestDistanceMapCalculator.cpp:19) +==24632== +==24632== Open file descriptor 113: +==24632== +==24632== +==24632== Open file descriptor 110: +==24632== +==24632== +==24632== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistanceMapCalculator_valgrind.txt +==24632== +==24632== +==24632== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24632== +==24632== +==24632== +==24632== HEAP SUMMARY: +==24632== in use at exit: 620,703 bytes in 8,235 blocks +==24632== total heap usage: 7,651,834 allocs, 7,643,599 frees, 1,604,363,731 bytes allocated +==24632== +==24632== LEAK SUMMARY: +==24632== definitely lost: 0 bytes in 0 blocks +==24632== indirectly lost: 0 bytes in 0 blocks +==24632== possibly lost: 0 bytes in 0 blocks +==24632== still reachable: 2,576 bytes in 3 blocks +==24632== suppressed: 618,127 bytes in 8,232 blocks +==24632== Reachable blocks (those to which a pointer was found) are not shown. +==24632== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24632== +==24632== For lists of detected and suppressed errors, rerun with: -s +==24632== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-20_21-41-09/TestDistributedBoxCollection_valgrind.txt b/log-files/2024-09-20_21-41-09/TestDistributedBoxCollection_valgrind.txt new file mode 100644 index 000000000..e7433861a --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestDistributedBoxCollection_valgrind.txt @@ -0,0 +1,73 @@ +==24631== Memcheck, a memory error detector +==24631== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24631== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24631== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedBoxCollection -malloc_debug -malloc_dump -memory_info +==24631== Parent PID: 24036 +==24631== +==24631== +==24631== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24631== Open file descriptor 12: +==24631== at 0x823407D: pipe (pipe.c:29) +==24631== by 0x100C507D: ??? +==24631== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24631== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24631== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24631== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24631== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24631== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24631== by 0x161C60: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24631== by 0x15BFE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24631== by 0x15F37A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24631== by 0x15F21A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24631== by 0x15F8B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24631== by 0x15A405: main (TestDistributedBoxCollection.cpp:19) +==24631== +==24631== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24631== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24631== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24631== by 0x6590822: ??? +==24631== by 0x659096F: ??? +==24631== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24631== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24631== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24631== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24631== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24631== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24631== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24631== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24631== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24631== by 0x161C60: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24631== by 0x15BFE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24631== by 0x15F37A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24631== by 0x15F21A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24631== by 0x15F8B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24631== by 0x15A405: main (TestDistributedBoxCollection.cpp:19) +==24631== +==24631== Open file descriptor 113: +==24631== +==24631== +==24631== Open file descriptor 110: +==24631== +==24631== +==24631== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedBoxCollection_valgrind.txt +==24631== +==24631== +==24631== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24631== +==24631== +==24631== +==24631== HEAP SUMMARY: +==24631== in use at exit: 618,222 bytes in 8,238 blocks +==24631== total heap usage: 179,700 allocs, 171,462 frees, 1,440,799,831 bytes allocated +==24631== +==24631== LEAK SUMMARY: +==24631== definitely lost: 0 bytes in 0 blocks +==24631== indirectly lost: 0 bytes in 0 blocks +==24631== possibly lost: 0 bytes in 0 blocks +==24631== still reachable: 24 bytes in 2 blocks +==24631== suppressed: 618,198 bytes in 8,236 blocks +==24631== Reachable blocks (those to which a pointer was found) are not shown. +==24631== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24631== +==24631== For lists of detected and suppressed errors, rerun with: -s +==24631== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestDistributedQuadraticMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestDistributedQuadraticMesh_valgrind.txt new file mode 100644 index 000000000..acf06fa36 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestDistributedQuadraticMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24410== Memcheck, a memory error detector +==24410== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24410== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24410== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedQuadraticMesh -malloc_debug -malloc_dump -memory_info +==24410== Parent PID: 24036 +==24410== +==24410== +==24410== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24410== Open file descriptor 12: +==24410== at 0x6D7D07D: pipe (pipe.c:29) +==24410== by 0x100C507D: ??? +==24410== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24410== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24410== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24410== by 0x7017D38: PetscInitialize (pinit.c:924) +==24410== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24410== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24410== by 0x12A04E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24410== by 0x124E9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24410== by 0x127B7A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24410== by 0x127A1A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24410== by 0x1280B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24410== by 0x1232C5: main (TestDistributedQuadraticMesh.cpp:19) +==24410== +==24410== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24410== at 0x6D81A1C: __open_nocancel (open64_nocancel.c:39) +==24410== by 0x6D05BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24410== by 0x6590822: ??? +==24410== by 0x659096F: ??? +==24410== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24410== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24410== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24410== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24410== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24410== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24410== by 0x7017D38: PetscInitialize (pinit.c:924) +==24410== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24410== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24410== by 0x12A04E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24410== by 0x124E9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24410== by 0x127B7A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24410== by 0x127A1A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24410== by 0x1280B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24410== by 0x1232C5: main (TestDistributedQuadraticMesh.cpp:19) +==24410== +==24410== Open file descriptor 113: +==24410== +==24410== +==24410== Open file descriptor 110: +==24410== +==24410== +==24410== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedQuadraticMesh_valgrind.txt +==24410== +==24410== +==24410== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24410== +==24410== +==24410== +==24410== HEAP SUMMARY: +==24410== in use at exit: 618,222 bytes in 8,238 blocks +==24410== total heap usage: 204,141 allocs, 195,903 frees, 1,346,746,145 bytes allocated +==24410== +==24410== LEAK SUMMARY: +==24410== definitely lost: 0 bytes in 0 blocks +==24410== indirectly lost: 0 bytes in 0 blocks +==24410== possibly lost: 0 bytes in 0 blocks +==24410== still reachable: 24 bytes in 2 blocks +==24410== suppressed: 618,198 bytes in 8,236 blocks +==24410== Reachable blocks (those to which a pointer was found) are not shown. +==24410== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24410== +==24410== For lists of detected and suppressed errors, rerun with: -s +==24410== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestDistributedTetrahedralMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestDistributedTetrahedralMesh_valgrind.txt new file mode 100644 index 000000000..b025d7fe4 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestDistributedTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24411== Memcheck, a memory error detector +==24411== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24411== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24411== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==24411== Parent PID: 24036 +==24411== +==24411== +==24411== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24411== Open file descriptor 12: +==24411== at 0x823407D: pipe (pipe.c:29) +==24411== by 0x100C507D: ??? +==24411== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24411== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24411== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24411== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24411== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24411== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24411== by 0x1464DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24411== by 0x13EB23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24411== by 0x141FCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24411== by 0x141E6E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24411== by 0x142505: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24411== by 0x13CE05: main (TestDistributedTetrahedralMesh.cpp:19) +==24411== +==24411== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24411== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24411== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24411== by 0x6590822: ??? +==24411== by 0x659096F: ??? +==24411== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24411== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24411== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24411== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24411== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24411== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24411== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24411== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24411== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24411== by 0x1464DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24411== by 0x13EB23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24411== by 0x141FCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24411== by 0x141E6E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24411== by 0x142505: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24411== by 0x13CE05: main (TestDistributedTetrahedralMesh.cpp:19) +==24411== +==24411== Open file descriptor 113: +==24411== +==24411== +==24411== Open file descriptor 110: +==24411== +==24411== +==24411== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedTetrahedralMesh_valgrind.txt +==24411== +==24411== +==24411== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24411== +==24411== +==24411== +==24411== HEAP SUMMARY: +==24411== in use at exit: 620,703 bytes in 8,235 blocks +==24411== total heap usage: 3,378,444 allocs, 3,370,209 frees, 1,457,879,495 bytes allocated +==24411== +==24411== LEAK SUMMARY: +==24411== definitely lost: 0 bytes in 0 blocks +==24411== indirectly lost: 0 bytes in 0 blocks +==24411== possibly lost: 0 bytes in 0 blocks +==24411== still reachable: 2,576 bytes in 3 blocks +==24411== suppressed: 618,127 bytes in 8,232 blocks +==24411== Reachable blocks (those to which a pointer was found) are not shown. +==24411== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24411== +==24411== For lists of detected and suppressed errors, rerun with: -s +==24411== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-20_21-41-09/TestDistributedVector_valgrind.txt b/log-files/2024-09-20_21-41-09/TestDistributedVector_valgrind.txt new file mode 100644 index 000000000..93a4ae99c --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestDistributedVector_valgrind.txt @@ -0,0 +1,73 @@ +==24095== Memcheck, a memory error detector +==24095== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24095== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24095== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestDistributedVector -malloc_debug -malloc_dump -memory_info +==24095== Parent PID: 24036 +==24095== +==24095== +==24095== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24095== Open file descriptor 12: +==24095== at 0x607407D: pipe (pipe.c:29) +==24095== by 0xAEA507D: ??? +==24095== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24095== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24095== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24095== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24095== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24095== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24095== by 0x129F94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24095== by 0x124F49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24095== by 0x127BA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24095== by 0x127A48: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24095== by 0x1280DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24095== by 0x123365: main (TestDistributedVector.cpp:19) +==24095== +==24095== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24095== at 0x6078A1C: __open_nocancel (open64_nocancel.c:39) +==24095== by 0x5FFCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24095== by 0x4935822: ??? +==24095== by 0x493596F: ??? +==24095== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24095== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24095== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24095== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24095== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24095== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24095== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24095== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24095== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24095== by 0x129F94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24095== by 0x124F49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24095== by 0x127BA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24095== by 0x127A48: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24095== by 0x1280DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24095== by 0x123365: main (TestDistributedVector.cpp:19) +==24095== +==24095== Open file descriptor 113: +==24095== +==24095== +==24095== Open file descriptor 110: +==24095== +==24095== +==24095== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedVector_valgrind.txt +==24095== +==24095== +==24095== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24095== +==24095== +==24095== +==24095== HEAP SUMMARY: +==24095== in use at exit: 617,838 bytes in 8,238 blocks +==24095== total heap usage: 46,123 allocs, 37,885 frees, 1,338,418,388 bytes allocated +==24095== +==24095== LEAK SUMMARY: +==24095== definitely lost: 0 bytes in 0 blocks +==24095== indirectly lost: 0 bytes in 0 blocks +==24095== possibly lost: 0 bytes in 0 blocks +==24095== still reachable: 24 bytes in 2 blocks +==24095== suppressed: 617,814 bytes in 8,236 blocks +==24095== Reachable blocks (those to which a pointer was found) are not shown. +==24095== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24095== +==24095== For lists of detected and suppressed errors, rerun with: -s +==24095== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestDivisionBiasTrackingModifier_valgrind.txt b/log-files/2024-09-20_21-41-09/TestDivisionBiasTrackingModifier_valgrind.txt new file mode 100644 index 000000000..58b7bc51a --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestDivisionBiasTrackingModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26241== Memcheck, a memory error detector +==26241== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26241== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26241== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDivisionBiasTrackingModifier -malloc_debug -malloc_dump -memory_info +==26241== Parent PID: 24036 +==26241== +==26241== +==26241== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26241== Open file descriptor 12: +==26241== at 0xF83B07D: pipe (pipe.c:29) +==26241== by 0x196AD07D: ??? +==26241== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26241== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26241== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26241== by 0x10127D38: PetscInitialize (pinit.c:924) +==26241== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26241== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26241== by 0x1FE694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26241== by 0x1F67DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26241== by 0x1F9F72: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26241== by 0x1F9E6D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26241== by 0x1FA481: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26241== by 0x1F4FD5: main (TestDivisionBiasTrackingModifier.cpp:18) +==26241== +==26241== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26241== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==26241== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26241== by 0xF137822: ??? +==26241== by 0xF13796F: ??? +==26241== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26241== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26241== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26241== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26241== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26241== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26241== by 0x10127D38: PetscInitialize (pinit.c:924) +==26241== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26241== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26241== by 0x1FE694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26241== by 0x1F67DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26241== by 0x1F9F72: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26241== by 0x1F9E6D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26241== by 0x1FA481: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26241== by 0x1F4FD5: main (TestDivisionBiasTrackingModifier.cpp:18) +==26241== +==26241== Open file descriptor 113: +==26241== +==26241== +==26241== Open file descriptor 110: +==26241== +==26241== +==26241== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDivisionBiasTrackingModifier_valgrind.txt +==26241== +==26241== +==26241== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26241== +==26241== +==26241== +==26241== HEAP SUMMARY: +==26241== in use at exit: 618,279 bytes in 8,235 blocks +==26241== total heap usage: 7,541,912 allocs, 7,533,677 frees, 2,725,541,003 bytes allocated +==26241== +==26241== LEAK SUMMARY: +==26241== definitely lost: 0 bytes in 0 blocks +==26241== indirectly lost: 0 bytes in 0 blocks +==26241== possibly lost: 0 bytes in 0 blocks +==26241== still reachable: 56 bytes in 3 blocks +==26241== suppressed: 618,223 bytes in 8,232 blocks +==26241== Reachable blocks (those to which a pointer was found) are not shown. +==26241== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26241== +==26241== For lists of detected and suppressed errors, rerun with: -s +==26241== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 32 from 32) diff --git a/log-files/2024-09-20_21-41-09/TestDynamicVentilation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestDynamicVentilation_valgrind.txt new file mode 100644 index 000000000..bb7f5de91 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestDynamicVentilation_valgrind.txt @@ -0,0 +1,73 @@ +==41287== Memcheck, a memory error detector +==41287== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41287== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41287== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestDynamicVentilation -malloc_debug -malloc_dump -memory_info +==41287== Parent PID: 24036 +==41287== +==41287== +==41287== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41287== Open file descriptor 12: +==41287== at 0x51FE07D: pipe (pipe.c:29) +==41287== by 0x107A507D: ??? +==41287== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41287== by 0x6779418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41287== by 0x6712D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41287== by 0x5409D38: PetscInitialize (pinit.c:924) +==41287== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41287== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41287== by 0x11807E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41287== by 0x11378D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41287== by 0x1160AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41287== by 0x115F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41287== by 0x1165E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41287== by 0x111BB5: main (TestDynamicVentilation.cpp:19) +==41287== +==41287== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41287== at 0x5202A1C: __open_nocancel (open64_nocancel.c:39) +==41287== by 0x5186BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41287== by 0x4A53822: ??? +==41287== by 0x4A5396F: ??? +==41287== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41287== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41287== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41287== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41287== by 0x6779418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41287== by 0x6712D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41287== by 0x5409D38: PetscInitialize (pinit.c:924) +==41287== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41287== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41287== by 0x11807E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41287== by 0x11378D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41287== by 0x1160AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41287== by 0x115F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41287== by 0x1165E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41287== by 0x111BB5: main (TestDynamicVentilation.cpp:19) +==41287== +==41287== Open file descriptor 113: +==41287== +==41287== +==41287== Open file descriptor 110: +==41287== +==41287== +==41287== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDynamicVentilation_valgrind.txt +==41287== +==41287== +==41287== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41287== +==41287== +==41287== +==41287== HEAP SUMMARY: +==41287== in use at exit: 618,318 bytes in 8,238 blocks +==41287== total heap usage: 74,109 allocs, 65,871 frees, 1,350,507,030 bytes allocated +==41287== +==41287== LEAK SUMMARY: +==41287== definitely lost: 0 bytes in 0 blocks +==41287== indirectly lost: 0 bytes in 0 blocks +==41287== possibly lost: 0 bytes in 0 blocks +==41287== still reachable: 24 bytes in 2 blocks +==41287== suppressed: 618,294 bytes in 8,236 blocks +==41287== Reachable blocks (those to which a pointer was found) are not shown. +==41287== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41287== +==41287== For lists of detected and suppressed errors, rerun with: -s +==41287== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestDynamicallyLoadedCellModels_valgrind.txt b/log-files/2024-09-20_21-41-09/TestDynamicallyLoadedCellModels_valgrind.txt new file mode 100644 index 000000000..0c6c185be --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestDynamicallyLoadedCellModels_valgrind.txt @@ -0,0 +1,73 @@ +==41875== Memcheck, a memory error detector +==41875== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41875== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41875== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestDynamicallyLoadedCellModels -malloc_debug -malloc_dump -memory_info +==41875== Parent PID: 24036 +==41875== +==41875== +==41875== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41875== Open file descriptor 12: +==41875== at 0x882107D: pipe (pipe.c:29) +==41875== by 0x1432407D: ??? +==41875== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41875== by 0x9F1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41875== by 0x9EB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41875== by 0x8BACD38: PetscInitialize (pinit.c:924) +==41875== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41875== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41875== by 0x123164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41875== by 0x11E28F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41875== by 0x120CE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41875== by 0x120B88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41875== by 0x12121F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41875== by 0x119055: main (TestDynamicallyLoadedCellModels.cpp:19) +==41875== +==41875== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41875== at 0x8825A1C: __open_nocancel (open64_nocancel.c:39) +==41875== by 0x87A9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41875== by 0x848A822: ??? +==41875== by 0x848A96F: ??? +==41875== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41875== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41875== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41875== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41875== by 0x9F1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41875== by 0x9EB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41875== by 0x8BACD38: PetscInitialize (pinit.c:924) +==41875== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41875== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41875== by 0x123164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41875== by 0x11E28F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41875== by 0x120CE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41875== by 0x120B88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41875== by 0x12121F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41875== by 0x119055: main (TestDynamicallyLoadedCellModels.cpp:19) +==41875== +==41875== Open file descriptor 113: +==41875== +==41875== +==41875== Open file descriptor 110: +==41875== +==41875== +==41875== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDynamicallyLoadedCellModels_valgrind.txt +==41875== +==41875== +==41875== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41875== +==41875== +==41875== +==41875== HEAP SUMMARY: +==41875== in use at exit: 632,404 bytes in 8,265 blocks +==41875== total heap usage: 958,941 allocs, 950,676 frees, 1,914,138,086 bytes allocated +==41875== +==41875== LEAK SUMMARY: +==41875== definitely lost: 0 bytes in 0 blocks +==41875== indirectly lost: 0 bytes in 0 blocks +==41875== possibly lost: 0 bytes in 0 blocks +==41875== still reachable: 14,165 bytes in 33 blocks +==41875== suppressed: 618,239 bytes in 8,232 blocks +==41875== Reachable blocks (those to which a pointer was found) are not shown. +==41875== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41875== +==41875== For lists of detected and suppressed errors, rerun with: -s +==41875== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestEdgeInteriorSrn_valgrind.txt b/log-files/2024-09-20_21-41-09/TestEdgeInteriorSrn_valgrind.txt new file mode 100644 index 000000000..459175f3e --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestEdgeInteriorSrn_valgrind.txt @@ -0,0 +1,73 @@ +==25496== Memcheck, a memory error detector +==25496== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25496== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25496== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEdgeInteriorSrn -malloc_debug -malloc_dump -memory_info +==25496== Parent PID: 24036 +==25496== +==25496== +==25496== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25496== Open file descriptor 12: +==25496== at 0xF83B07D: pipe (pipe.c:29) +==25496== by 0x196AD07D: ??? +==25496== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25496== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25496== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25496== by 0x10127D38: PetscInitialize (pinit.c:924) +==25496== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25496== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25496== by 0x130B3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25496== by 0x12B59D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25496== by 0x12E2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25496== by 0x12E14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25496== by 0x12E7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25496== by 0x1299C5: main (TestEdgeInteriorSrn.cpp:19) +==25496== +==25496== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25496== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==25496== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25496== by 0xF137822: ??? +==25496== by 0xF13796F: ??? +==25496== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25496== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25496== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25496== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25496== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25496== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25496== by 0x10127D38: PetscInitialize (pinit.c:924) +==25496== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25496== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25496== by 0x130B3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25496== by 0x12B59D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25496== by 0x12E2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25496== by 0x12E14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25496== by 0x12E7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25496== by 0x1299C5: main (TestEdgeInteriorSrn.cpp:19) +==25496== +==25496== Open file descriptor 113: +==25496== +==25496== +==25496== Open file descriptor 110: +==25496== +==25496== +==25496== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEdgeInteriorSrn_valgrind.txt +==25496== +==25496== +==25496== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25496== +==25496== +==25496== +==25496== HEAP SUMMARY: +==25496== in use at exit: 618,366 bytes in 8,240 blocks +==25496== total heap usage: 90,089 allocs, 81,849 frees, 1,342,348,518 bytes allocated +==25496== +==25496== LEAK SUMMARY: +==25496== definitely lost: 0 bytes in 0 blocks +==25496== indirectly lost: 0 bytes in 0 blocks +==25496== possibly lost: 0 bytes in 0 blocks +==25496== still reachable: 72 bytes in 4 blocks +==25496== suppressed: 618,294 bytes in 8,236 blocks +==25496== Reachable blocks (those to which a pointer was found) are not shown. +==25496== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25496== +==25496== For lists of detected and suppressed errors, rerun with: -s +==25496== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-09-20_21-41-09/TestEdge_valgrind.txt b/log-files/2024-09-20_21-41-09/TestEdge_valgrind.txt new file mode 100644 index 000000000..824f95f63 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestEdge_valgrind.txt @@ -0,0 +1,73 @@ +==24533== Memcheck, a memory error detector +==24533== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24533== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24533== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestEdge -malloc_debug -malloc_dump -memory_info +==24533== Parent PID: 24036 +==24533== +==24533== +==24533== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24533== Open file descriptor 12: +==24533== at 0x814B07D: pipe (pipe.c:29) +==24533== by 0x100C507D: ??? +==24533== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24533== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24533== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24533== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24533== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24533== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24533== by 0x15EC55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24533== by 0x15930F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24533== by 0x15C29A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24533== by 0x15C196: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24533== by 0x15C7A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24533== by 0x157B05: main (TestEdge.cpp:18) +==24533== +==24533== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24533== at 0x814FA1C: __open_nocancel (open64_nocancel.c:39) +==24533== by 0x80D3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24533== by 0x6590822: ??? +==24533== by 0x659096F: ??? +==24533== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24533== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24533== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24533== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24533== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24533== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24533== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24533== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24533== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24533== by 0x15EC55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24533== by 0x15930F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24533== by 0x15C29A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24533== by 0x15C196: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24533== by 0x15C7A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24533== by 0x157B05: main (TestEdge.cpp:18) +==24533== +==24533== Open file descriptor 113: +==24533== +==24533== +==24533== Open file descriptor 110: +==24533== +==24533== +==24533== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEdge_valgrind.txt +==24533== +==24533== +==24533== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24533== +==24533== +==24533== +==24533== HEAP SUMMARY: +==24533== in use at exit: 618,222 bytes in 8,238 blocks +==24533== total heap usage: 48,025 allocs, 39,787 frees, 1,338,475,802 bytes allocated +==24533== +==24533== LEAK SUMMARY: +==24533== definitely lost: 0 bytes in 0 blocks +==24533== indirectly lost: 0 bytes in 0 blocks +==24533== possibly lost: 0 bytes in 0 blocks +==24533== still reachable: 24 bytes in 2 blocks +==24533== suppressed: 618,198 bytes in 8,236 blocks +==24533== Reachable blocks (those to which a pointer was found) are not shown. +==24533== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24533== +==24533== For lists of detected and suppressed errors, rerun with: -s +==24533== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestElectroMechanicsExactSolution_valgrind.txt b/log-files/2024-09-20_21-41-09/TestElectroMechanicsExactSolution_valgrind.txt new file mode 100644 index 000000000..22952ddf2 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestElectroMechanicsExactSolution_valgrind.txt @@ -0,0 +1,73 @@ +==43407== Memcheck, a memory error detector +==43407== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43407== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43407== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectroMechanicsExactSolution -malloc_debug -malloc_dump -memory_info +==43407== Parent PID: 24036 +==43407== +==43407== +==43407== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43407== Open file descriptor 12: +==43407== at 0xAAEE07D: pipe (pipe.c:29) +==43407== by 0x1432407D: ??? +==43407== by 0xD5A94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43407== by 0xA2F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43407== by 0xA28ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43407== by 0xACF7D38: PetscInitialize (pinit.c:924) +==43407== by 0xA1B71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43407== by 0xA1B7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43407== by 0x12D4D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43407== by 0x12824F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43407== by 0x12ADF6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43407== by 0x12ACF1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43407== by 0x12B305: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43407== by 0x126095: main (TestElectroMechanicsExactSolution.cpp:18) +==43407== +==43407== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43407== at 0xAAF2A1C: __open_nocancel (open64_nocancel.c:39) +==43407== by 0xAA76BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43407== by 0xA1F2822: ??? +==43407== by 0xA1F296F: ??? +==43407== by 0xD64E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43407== by 0xD64E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43407== by 0xD604922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43407== by 0xD5A92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43407== by 0xA2F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43407== by 0xA28ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43407== by 0xACF7D38: PetscInitialize (pinit.c:924) +==43407== by 0xA1B71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43407== by 0xA1B7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43407== by 0x12D4D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43407== by 0x12824F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43407== by 0x12ADF6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43407== by 0x12ACF1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43407== by 0x12B305: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43407== by 0x126095: main (TestElectroMechanicsExactSolution.cpp:18) +==43407== +==43407== Open file descriptor 113: +==43407== +==43407== +==43407== Open file descriptor 110: +==43407== +==43407== +==43407== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectroMechanicsExactSolution_valgrind.txt +==43407== +==43407== +==43407== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43407== +==43407== +==43407== +==43407== HEAP SUMMARY: +==43407== in use at exit: 618,743 bytes in 8,244 blocks +==43407== total heap usage: 1,257,384 allocs, 1,249,140 frees, 1,488,137,813 bytes allocated +==43407== +==43407== LEAK SUMMARY: +==43407== definitely lost: 0 bytes in 0 blocks +==43407== indirectly lost: 0 bytes in 0 blocks +==43407== possibly lost: 0 bytes in 0 blocks +==43407== still reachable: 24 bytes in 2 blocks +==43407== suppressed: 618,719 bytes in 8,242 blocks +==43407== Reachable blocks (those to which a pointer was found) are not shown. +==43407== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43407== +==43407== For lists of detected and suppressed errors, rerun with: -s +==43407== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestElectroMechanicsProblemDefinition_valgrind.txt b/log-files/2024-09-20_21-41-09/TestElectroMechanicsProblemDefinition_valgrind.txt new file mode 100644 index 000000000..27205c0e2 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestElectroMechanicsProblemDefinition_valgrind.txt @@ -0,0 +1,36 @@ +==43406== Memcheck, a memory error detector +==43406== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43406== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43406== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectroMechanicsProblemDefinition -malloc_debug -malloc_dump -memory_info +==43406== Parent PID: 24036 +==43406== +==43406== +==43406== FILE DESCRIPTORS: 7 open (3 std) at exit. +==43406== Open file descriptor 113: +==43406== +==43406== +==43406== Open file descriptor 110: +==43406== +==43406== +==43406== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectroMechanicsProblemDefinition_valgrind.txt +==43406== +==43406== +==43406== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43406== +==43406== +==43406== +==43406== HEAP SUMMARY: +==43406== in use at exit: 24 bytes in 2 blocks +==43406== total heap usage: 13,908 allocs, 13,906 frees, 1,516,395 bytes allocated +==43406== +==43406== LEAK SUMMARY: +==43406== definitely lost: 0 bytes in 0 blocks +==43406== indirectly lost: 0 bytes in 0 blocks +==43406== possibly lost: 0 bytes in 0 blocks +==43406== still reachable: 24 bytes in 2 blocks +==43406== suppressed: 0 bytes in 0 blocks +==43406== Reachable blocks (those to which a pointer was found) are not shown. +==43406== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43406== +==43406== For lists of detected and suppressed errors, rerun with: -s +==43406== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-20_21-41-09/TestElectrodes_valgrind.txt b/log-files/2024-09-20_21-41-09/TestElectrodes_valgrind.txt new file mode 100644 index 000000000..f9438354d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestElectrodes_valgrind.txt @@ -0,0 +1,73 @@ +==43901== Memcheck, a memory error detector +==43901== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43901== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43901== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectrodes -malloc_debug -malloc_dump -memory_info +==43901== Parent PID: 24036 +==43901== +==43901== +==43901== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43901== Open file descriptor 12: +==43901== at 0xBD6007D: pipe (pipe.c:29) +==43901== by 0x1432407D: ??? +==43901== by 0xFADE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43901== by 0xB64E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43901== by 0xB5E7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43901== by 0xA2BBD38: PetscInitialize (pinit.c:924) +==43901== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43901== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43901== by 0x11B15C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43901== by 0x1167ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43901== by 0x118FC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43901== by 0x118E66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43901== by 0x1194FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43901== by 0x114C15: main (TestElectrodes.cpp:19) +==43901== +==43901== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43901== at 0xBD64A1C: __open_nocancel (open64_nocancel.c:39) +==43901== by 0xBCE8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43901== by 0xB54B822: ??? +==43901== by 0xB54B96F: ??? +==43901== by 0xFB836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43901== by 0xFB83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43901== by 0xFB39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43901== by 0xFADE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43901== by 0xB64E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43901== by 0xB5E7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43901== by 0xA2BBD38: PetscInitialize (pinit.c:924) +==43901== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43901== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43901== by 0x11B15C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43901== by 0x1167ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43901== by 0x118FC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43901== by 0x118E66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43901== by 0x1194FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43901== by 0x114C15: main (TestElectrodes.cpp:19) +==43901== +==43901== Open file descriptor 113: +==43901== +==43901== +==43901== Open file descriptor 110: +==43901== +==43901== +==43901== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectrodes_valgrind.txt +==43901== +==43901== +==43901== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43901== +==43901== +==43901== +==43901== HEAP SUMMARY: +==43901== in use at exit: 618,334 bytes in 8,238 blocks +==43901== total heap usage: 264,938 allocs, 256,700 frees, 1,364,214,310 bytes allocated +==43901== +==43901== LEAK SUMMARY: +==43901== definitely lost: 0 bytes in 0 blocks +==43901== indirectly lost: 0 bytes in 0 blocks +==43901== possibly lost: 0 bytes in 0 blocks +==43901== still reachable: 24 bytes in 2 blocks +==43901== suppressed: 618,310 bytes in 8,236 blocks +==43901== Reachable blocks (those to which a pointer was found) are not shown. +==43901== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43901== +==43901== For lists of detected and suppressed errors, rerun with: -s +==43901== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestElementAttributes_valgrind.txt b/log-files/2024-09-20_21-41-09/TestElementAttributes_valgrind.txt new file mode 100644 index 000000000..c7ccd5044 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestElementAttributes_valgrind.txt @@ -0,0 +1,73 @@ +==24437== Memcheck, a memory error detector +==24437== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24437== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24437== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestElementAttributes -malloc_debug -malloc_dump -memory_info +==24437== Parent PID: 24036 +==24437== +==24437== +==24437== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24437== Open file descriptor 12: +==24437== at 0x695107D: pipe (pipe.c:29) +==24437== by 0x100C307D: ??? +==24437== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24437== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24437== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24437== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24437== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24437== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24437== by 0x12CF3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24437== by 0x127D29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24437== by 0x12A996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24437== by 0x12A836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24437== by 0x12AECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24437== by 0x126145: main (TestElementAttributes.cpp:19) +==24437== +==24437== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24437== at 0x6955A1C: __open_nocancel (open64_nocancel.c:39) +==24437== by 0x68D9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24437== by 0x6590822: ??? +==24437== by 0x659096F: ??? +==24437== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24437== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24437== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24437== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24437== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24437== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24437== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24437== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24437== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24437== by 0x12CF3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24437== by 0x127D29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24437== by 0x12A996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24437== by 0x12A836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24437== by 0x12AECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24437== by 0x126145: main (TestElementAttributes.cpp:19) +==24437== +==24437== Open file descriptor 113: +==24437== +==24437== +==24437== Open file descriptor 110: +==24437== +==24437== +==24437== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElementAttributes_valgrind.txt +==24437== +==24437== +==24437== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24437== +==24437== +==24437== +==24437== HEAP SUMMARY: +==24437== in use at exit: 618,222 bytes in 8,238 blocks +==24437== total heap usage: 47,472 allocs, 39,234 frees, 1,338,441,961 bytes allocated +==24437== +==24437== LEAK SUMMARY: +==24437== definitely lost: 0 bytes in 0 blocks +==24437== indirectly lost: 0 bytes in 0 blocks +==24437== possibly lost: 0 bytes in 0 blocks +==24437== still reachable: 24 bytes in 2 blocks +==24437== suppressed: 618,198 bytes in 8,236 blocks +==24437== Reachable blocks (those to which a pointer was found) are not shown. +==24437== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24437== +==24437== For lists of detected and suppressed errors, rerun with: -s +==24437== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestElement_valgrind.txt b/log-files/2024-09-20_21-41-09/TestElement_valgrind.txt new file mode 100644 index 000000000..e81c74196 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestElement_valgrind.txt @@ -0,0 +1,73 @@ +==24436== Memcheck, a memory error detector +==24436== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24436== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24436== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestElement -malloc_debug -malloc_dump -memory_info +==24436== Parent PID: 24036 +==24436== +==24436== +==24436== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24436== Open file descriptor 12: +==24436== at 0x6D3B07D: pipe (pipe.c:29) +==24436== by 0x100C507D: ??? +==24436== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24436== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24436== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24436== by 0x7017D38: PetscInitialize (pinit.c:924) +==24436== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24436== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24436== by 0x12B5A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24436== by 0x12642D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24436== by 0x12932C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24436== by 0x1291CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24436== by 0x129863: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24436== by 0x124855: main (TestElement.cpp:19) +==24436== +==24436== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24436== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24436== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24436== by 0x6590822: ??? +==24436== by 0x659096F: ??? +==24436== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24436== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24436== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24436== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24436== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24436== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24436== by 0x7017D38: PetscInitialize (pinit.c:924) +==24436== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24436== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24436== by 0x12B5A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24436== by 0x12642D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24436== by 0x12932C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24436== by 0x1291CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24436== by 0x129863: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24436== by 0x124855: main (TestElement.cpp:19) +==24436== +==24436== Open file descriptor 113: +==24436== +==24436== +==24436== Open file descriptor 110: +==24436== +==24436== +==24436== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElement_valgrind.txt +==24436== +==24436== +==24436== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24436== +==24436== +==24436== +==24436== HEAP SUMMARY: +==24436== in use at exit: 618,222 bytes in 8,238 blocks +==24436== total heap usage: 65,855 allocs, 57,617 frees, 1,340,509,004 bytes allocated +==24436== +==24436== LEAK SUMMARY: +==24436== definitely lost: 0 bytes in 0 blocks +==24436== indirectly lost: 0 bytes in 0 blocks +==24436== possibly lost: 0 bytes in 0 blocks +==24436== still reachable: 24 bytes in 2 blocks +==24436== suppressed: 618,198 bytes in 8,236 blocks +==24436== Reachable blocks (those to which a pointer was found) are not shown. +==24436== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24436== +==24436== For lists of detected and suppressed errors, rerun with: -s +==24436== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestEllipticBoxDomainPdeModifier_valgrind.txt b/log-files/2024-09-20_21-41-09/TestEllipticBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..e3636a1db --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestEllipticBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25524== Memcheck, a memory error detector +==25524== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25524== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25524== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEllipticBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25524== Parent PID: 24036 +==25524== +==25524== +==25524== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25524== Open file descriptor 12: +==25524== at 0x1108F07D: pipe (pipe.c:29) +==25524== by 0x196AC07D: ??? +==25524== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25524== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25524== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25524== by 0xF627D38: PetscInitialize (pinit.c:924) +==25524== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25524== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25524== by 0x13AB97: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25524== by 0x135563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25524== by 0x138174: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25524== by 0x13806F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25524== by 0x138683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25524== by 0x133D65: main (TestEllipticBoxDomainPdeModifier.cpp:18) +==25524== +==25524== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25524== at 0x11093A1C: __open_nocancel (open64_nocancel.c:39) +==25524== by 0x11017BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25524== by 0xF4D4822: ??? +==25524== by 0xF4D496F: ??? +==25524== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25524== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25524== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25524== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25524== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25524== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25524== by 0xF627D38: PetscInitialize (pinit.c:924) +==25524== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25524== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25524== by 0x13AB97: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25524== by 0x135563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25524== by 0x138174: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25524== by 0x13806F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25524== by 0x138683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25524== by 0x133D65: main (TestEllipticBoxDomainPdeModifier.cpp:18) +==25524== +==25524== Open file descriptor 113: +==25524== +==25524== +==25524== Open file descriptor 110: +==25524== +==25524== +==25524== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEllipticBoxDomainPdeModifier_valgrind.txt +==25524== +==25524== +==25524== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25524== +==25524== +==25524== +==25524== HEAP SUMMARY: +==25524== in use at exit: 618,279 bytes in 8,235 blocks +==25524== total heap usage: 4,550,112 allocs, 4,541,877 frees, 1,904,492,140 bytes allocated +==25524== +==25524== LEAK SUMMARY: +==25524== definitely lost: 0 bytes in 0 blocks +==25524== indirectly lost: 0 bytes in 0 blocks +==25524== possibly lost: 0 bytes in 0 blocks +==25524== still reachable: 56 bytes in 3 blocks +==25524== suppressed: 618,223 bytes in 8,232 blocks +==25524== Reachable blocks (those to which a pointer was found) are not shown. +==25524== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25524== +==25524== For lists of detected and suppressed errors, rerun with: -s +==25524== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestEllipticGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-09-20_21-41-09/TestEllipticGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..612a966bd --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestEllipticGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25533== Memcheck, a memory error detector +==25533== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25533== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25533== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEllipticGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25533== Parent PID: 24036 +==25533== +==25533== +==25533== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25533== Open file descriptor 12: +==25533== at 0x1117607D: pipe (pipe.c:29) +==25533== by 0x196AC07D: ??? +==25533== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25533== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25533== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25533== by 0xF627D38: PetscInitialize (pinit.c:924) +==25533== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25533== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25533== by 0x13FC51: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25533== by 0x139D3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25533== by 0x13CDD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25533== by 0x13CC74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25533== by 0x13D30B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25533== by 0x138165: main (TestEllipticGrowingDomainPdeModifier.cpp:19) +==25533== +==25533== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25533== at 0x1117AA1C: __open_nocancel (open64_nocancel.c:39) +==25533== by 0x110FEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25533== by 0xF4D4822: ??? +==25533== by 0xF4D496F: ??? +==25533== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25533== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25533== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25533== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25533== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25533== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25533== by 0xF627D38: PetscInitialize (pinit.c:924) +==25533== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25533== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25533== by 0x13FC51: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25533== by 0x139D3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25533== by 0x13CDD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25533== by 0x13CC74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25533== by 0x13D30B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25533== by 0x138165: main (TestEllipticGrowingDomainPdeModifier.cpp:19) +==25533== +==25533== Open file descriptor 113: +==25533== +==25533== +==25533== Open file descriptor 110: +==25533== +==25533== +==25533== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEllipticGrowingDomainPdeModifier_valgrind.txt +==25533== +==25533== +==25533== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25533== +==25533== +==25533== +==25533== HEAP SUMMARY: +==25533== in use at exit: 618,350 bytes in 8,239 blocks +==25533== total heap usage: 1,610,262 allocs, 1,602,023 frees, 1,438,380,590 bytes allocated +==25533== +==25533== LEAK SUMMARY: +==25533== definitely lost: 0 bytes in 0 blocks +==25533== indirectly lost: 0 bytes in 0 blocks +==25533== possibly lost: 0 bytes in 0 blocks +==25533== still reachable: 56 bytes in 3 blocks +==25533== suppressed: 618,294 bytes in 8,236 blocks +==25533== Reachable blocks (those to which a pointer was found) are not shown. +==25533== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25533== +==25533== For lists of detected and suppressed errors, rerun with: -s +==25533== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestException_valgrind.txt b/log-files/2024-09-20_21-41-09/TestException_valgrind.txt new file mode 100644 index 000000000..6ebbb7954 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestException_valgrind.txt @@ -0,0 +1,73 @@ +==24096== Memcheck, a memory error detector +==24096== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24096== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24096== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestException -malloc_debug -malloc_dump -memory_info +==24096== Parent PID: 24036 +==24096== +==24096== +==24096== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24096== Open file descriptor 12: +==24096== at 0x4CB207D: pipe (pipe.c:29) +==24096== by 0xAEA507D: ??? +==24096== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24096== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24096== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24096== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24096== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24096== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24096== by 0x114E36: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24096== by 0x1105AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24096== by 0x112ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24096== by 0x112D78: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24096== by 0x11340F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24096== by 0x10E9D5: main (TestException.cpp:19) +==24096== +==24096== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24096== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24096== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24096== by 0x4935822: ??? +==24096== by 0x493596F: ??? +==24096== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24096== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24096== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24096== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24096== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24096== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24096== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24096== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24096== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24096== by 0x114E36: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24096== by 0x1105AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24096== by 0x112ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24096== by 0x112D78: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24096== by 0x11340F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24096== by 0x10E9D5: main (TestException.cpp:19) +==24096== +==24096== Open file descriptor 113: +==24096== +==24096== +==24096== Open file descriptor 110: +==24096== +==24096== +==24096== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestException_valgrind.txt +==24096== +==24096== +==24096== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24096== +==24096== +==24096== +==24096== HEAP SUMMARY: +==24096== in use at exit: 617,838 bytes in 8,238 blocks +==24096== total heap usage: 45,183 allocs, 36,945 frees, 1,338,187,192 bytes allocated +==24096== +==24096== LEAK SUMMARY: +==24096== definitely lost: 0 bytes in 0 blocks +==24096== indirectly lost: 0 bytes in 0 blocks +==24096== possibly lost: 0 bytes in 0 blocks +==24096== still reachable: 24 bytes in 2 blocks +==24096== suppressed: 617,814 bytes in 8,236 blocks +==24096== Reachable blocks (those to which a pointer was found) are not shown. +==24096== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24096== +==24096== For lists of detected and suppressed errors, rerun with: -s +==24096== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestExecutableSupport_valgrind.txt b/log-files/2024-09-20_21-41-09/TestExecutableSupport_valgrind.txt new file mode 100644 index 000000000..79e21bb58 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestExecutableSupport_valgrind.txt @@ -0,0 +1,79 @@ +==24097== Memcheck, a memory error detector +==24097== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24097== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24097== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestExecutableSupport -malloc_debug -malloc_dump -memory_info +==24097== Parent PID: 24036 +==24097== +==24097== +==24097== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24097== Open file descriptor 12: +==24097== at 0x4CB207D: pipe (pipe.c:29) +==24097== by 0xAEA507D: ??? +==24097== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24097== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24097== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24097== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24097== by 0x48D632C: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) +==24097== by 0x48D7EC0: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:455) +==24097== by 0x1120FD: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) +==24097== by 0x1124BC: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) +==24097== by 0x10D6CA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==24097== by 0x1103DA: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==24097== by 0x1102BF: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==24097== by 0x110165: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==24097== by 0x110027: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24097== by 0x11063B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24097== by 0x10C695: main (TestExecutableSupport.cpp:18) +==24097== +==24097== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24097== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24097== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24097== by 0x4935822: ??? +==24097== by 0x493596F: ??? +==24097== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24097== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24097== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24097== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24097== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24097== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24097== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24097== by 0x48D632C: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) +==24097== by 0x48D7EC0: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:455) +==24097== by 0x1120FD: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) +==24097== by 0x1124BC: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) +==24097== by 0x10D6CA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==24097== by 0x1103DA: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==24097== by 0x1102BF: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==24097== by 0x110165: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==24097== by 0x110027: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24097== by 0x11063B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24097== by 0x10C695: main (TestExecutableSupport.cpp:18) +==24097== +==24097== Open file descriptor 113: +==24097== +==24097== +==24097== Open file descriptor 110: +==24097== +==24097== +==24097== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExecutableSupport_valgrind.txt +==24097== +==24097== +==24097== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24097== +==24097== +==24097== +==24097== HEAP SUMMARY: +==24097== in use at exit: 617,838 bytes in 8,238 blocks +==24097== total heap usage: 45,223 allocs, 36,985 frees, 1,338,262,140 bytes allocated +==24097== +==24097== LEAK SUMMARY: +==24097== definitely lost: 0 bytes in 0 blocks +==24097== indirectly lost: 0 bytes in 0 blocks +==24097== possibly lost: 0 bytes in 0 blocks +==24097== still reachable: 24 bytes in 2 blocks +==24097== suppressed: 617,814 bytes in 8,236 blocks +==24097== Reachable blocks (those to which a pointer was found) are not shown. +==24097== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24097== +==24097== For lists of detected and suppressed errors, rerun with: -s +==24097== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestExplicitCardiacMechanicsSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestExplicitCardiacMechanicsSolver_valgrind.txt new file mode 100644 index 000000000..bf990bf53 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestExplicitCardiacMechanicsSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43435== Memcheck, a memory error detector +==43435== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43435== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43435== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExplicitCardiacMechanicsSolver -malloc_debug -malloc_dump -memory_info +==43435== Parent PID: 24036 +==43435== +==43435== +==43435== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43435== Open file descriptor 12: +==43435== at 0xAB1207D: pipe (pipe.c:29) +==43435== by 0x1432607D: ??? +==43435== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43435== by 0xC08B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43435== by 0xC024D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43435== by 0xAD1BD38: PetscInitialize (pinit.c:924) +==43435== by 0xA3121D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43435== by 0xA312227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43435== by 0x12399A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43435== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43435== by 0x1218A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43435== by 0x121746: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43435== by 0x121DDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43435== by 0x11D175: main (TestExplicitCardiacMechanicsSolver.cpp:19) +==43435== +==43435== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43435== at 0xAB16A1C: __open_nocancel (open64_nocancel.c:39) +==43435== by 0xAA9ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43435== by 0xA34D822: ??? +==43435== by 0xA34D96F: ??? +==43435== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43435== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43435== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43435== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43435== by 0xC08B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43435== by 0xC024D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43435== by 0xAD1BD38: PetscInitialize (pinit.c:924) +==43435== by 0xA3121D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43435== by 0xA312227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43435== by 0x12399A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43435== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43435== by 0x1218A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43435== by 0x121746: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43435== by 0x121DDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43435== by 0x11D175: main (TestExplicitCardiacMechanicsSolver.cpp:19) +==43435== +==43435== Open file descriptor 113: +==43435== +==43435== +==43435== Open file descriptor 110: +==43435== +==43435== +==43435== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExplicitCardiacMechanicsSolver_valgrind.txt +==43435== +==43435== +==43435== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43435== +==43435== +==43435== +==43435== HEAP SUMMARY: +==43435== in use at exit: 618,263 bytes in 8,234 blocks +==43435== total heap usage: 1,587,803 allocs, 1,579,569 frees, 1,535,127,381 bytes allocated +==43435== +==43435== LEAK SUMMARY: +==43435== definitely lost: 0 bytes in 0 blocks +==43435== indirectly lost: 0 bytes in 0 blocks +==43435== possibly lost: 0 bytes in 0 blocks +==43435== still reachable: 24 bytes in 2 blocks +==43435== suppressed: 618,239 bytes in 8,232 blocks +==43435== Reachable blocks (those to which a pointer was found) are not shown. +==43435== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43435== +==43435== For lists of detected and suppressed errors, rerun with: -s +==43435== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestExtendedBidomainProblem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestExtendedBidomainProblem_valgrind.txt new file mode 100644 index 000000000..eb1c6879f --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestExtendedBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41422== Memcheck, a memory error detector +==41422== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41422== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41422== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainProblem -malloc_debug -malloc_dump -memory_info +==41422== Parent PID: 24036 +==41422== +==41422== +==41422== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41422== Open file descriptor 12: +==41422== at 0xA98907D: pipe (pipe.c:29) +==41422== by 0x1432407D: ??? +==41422== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41422== by 0xA277418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41422== by 0xA210D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41422== by 0xAD14D38: PetscInitialize (pinit.c:924) +==41422== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41422== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41422== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41422== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41422== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41422== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41422== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41422== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) +==41422== +==41422== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41422== at 0xA98DA1C: __open_nocancel (open64_nocancel.c:39) +==41422== by 0xA911BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41422== by 0xA174822: ??? +==41422== by 0xA17496F: ??? +==41422== by 0xDA036DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41422== by 0xDA03938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41422== by 0xD9B9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41422== by 0xD95E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41422== by 0xA277418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41422== by 0xA210D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41422== by 0xAD14D38: PetscInitialize (pinit.c:924) +==41422== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41422== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41422== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41422== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41422== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41422== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41422== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41422== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) +==41422== +==41422== Open file descriptor 113: +==41422== +==41422== +==41422== Open file descriptor 110: +==41422== +==41422== +==41422== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainProblem_valgrind.txt +==41422== +==41422== +==41422== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41422== +==41422== +==41422== +==41422== HEAP SUMMARY: +==41422== in use at exit: 618,743 bytes in 8,244 blocks +==41422== total heap usage: 2,372,931 allocs, 2,364,687 frees, 2,468,286,371 bytes allocated +==41422== +==41422== LEAK SUMMARY: +==41422== definitely lost: 0 bytes in 0 blocks +==41422== indirectly lost: 0 bytes in 0 blocks +==41422== possibly lost: 0 bytes in 0 blocks +==41422== still reachable: 24 bytes in 2 blocks +==41422== suppressed: 618,719 bytes in 8,242 blocks +==41422== Reachable blocks (those to which a pointer was found) are not shown. +==41422== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41422== +==41422== For lists of detected and suppressed errors, rerun with: -s +==41422== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestExtendedBidomainTissue_valgrind.txt b/log-files/2024-09-20_21-41-09/TestExtendedBidomainTissue_valgrind.txt new file mode 100644 index 000000000..21f299dba --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestExtendedBidomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==41409== Memcheck, a memory error detector +==41409== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41409== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41409== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainTissue -malloc_debug -malloc_dump -memory_info +==41409== Parent PID: 24036 +==41409== +==41409== +==41409== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41409== Open file descriptor 12: +==41409== at 0xBB9F07D: pipe (pipe.c:29) +==41409== by 0x1432407D: ??? +==41409== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41409== by 0xBF1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41409== by 0xBEB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41409== by 0xA254D38: PetscInitialize (pinit.c:924) +==41409== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41409== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41409== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41409== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41409== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41409== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41409== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41409== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) +==41409== +==41409== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41409== at 0xBBA3A1C: __open_nocancel (open64_nocancel.c:39) +==41409== by 0xBB27BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41409== by 0xA101822: ??? +==41409== by 0xA10196F: ??? +==41409== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41409== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41409== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41409== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41409== by 0xBF1C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41409== by 0xBEB5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41409== by 0xA254D38: PetscInitialize (pinit.c:924) +==41409== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41409== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41409== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41409== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41409== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41409== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41409== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41409== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) +==41409== +==41409== Open file descriptor 113: +==41409== +==41409== +==41409== Open file descriptor 110: +==41409== +==41409== +==41409== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainTissue_valgrind.txt +==41409== +==41409== +==41409== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41409== +==41409== +==41409== +==41409== HEAP SUMMARY: +==41409== in use at exit: 618,334 bytes in 8,238 blocks +==41409== total heap usage: 120,936 allocs, 112,698 frees, 1,354,349,870 bytes allocated +==41409== +==41409== LEAK SUMMARY: +==41409== definitely lost: 0 bytes in 0 blocks +==41409== indirectly lost: 0 bytes in 0 blocks +==41409== possibly lost: 0 bytes in 0 blocks +==41409== still reachable: 24 bytes in 2 blocks +==41409== suppressed: 618,310 bytes in 8,236 blocks +==41409== Reachable blocks (those to which a pointer was found) are not shown. +==41409== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41409== +==41409== For lists of detected and suppressed errors, rerun with: -s +==41409== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestExtendedVsBidomainProblem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestExtendedVsBidomainProblem_valgrind.txt new file mode 100644 index 000000000..0157fc16a --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestExtendedVsBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41408== Memcheck, a memory error detector +==41408== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41408== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41408== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedVsBidomainProblem -malloc_debug -malloc_dump -memory_info +==41408== Parent PID: 24036 +==41408== +==41408== +==41408== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41408== Open file descriptor 12: +==41408== at 0xABEF07D: pipe (pipe.c:29) +==41408== by 0x1432407D: ??? +==41408== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41408== by 0xC2EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41408== by 0xC283D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41408== by 0xAF7AD38: PetscInitialize (pinit.c:924) +==41408== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41408== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41408== by 0x12E254: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41408== by 0x128EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41408== by 0x12C1D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41408== by 0x12C076: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41408== by 0x12C70D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41408== by 0x1272D5: main (TestExtendedVsBidomainProblem.cpp:19) +==41408== +==41408== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41408== at 0xABF3A1C: __open_nocancel (open64_nocancel.c:39) +==41408== by 0xAB77BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41408== by 0xA511822: ??? +==41408== by 0xA51196F: ??? +==41408== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41408== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41408== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41408== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41408== by 0xC2EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41408== by 0xC283D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41408== by 0xAF7AD38: PetscInitialize (pinit.c:924) +==41408== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41408== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41408== by 0x12E254: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41408== by 0x128EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41408== by 0x12C1D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41408== by 0x12C076: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41408== by 0x12C70D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41408== by 0x1272D5: main (TestExtendedVsBidomainProblem.cpp:19) +==41408== +==41408== Open file descriptor 113: +==41408== +==41408== +==41408== Open file descriptor 110: +==41408== +==41408== +==41408== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedVsBidomainProblem_valgrind.txt +==41408== +==41408== +==41408== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41408== +==41408== +==41408== +==41408== HEAP SUMMARY: +==41408== in use at exit: 618,814 bytes in 8,248 blocks +==41408== total heap usage: 466,062 allocs, 457,814 frees, 1,446,177,910 bytes allocated +==41408== +==41408== LEAK SUMMARY: +==41408== definitely lost: 0 bytes in 0 blocks +==41408== indirectly lost: 0 bytes in 0 blocks +==41408== possibly lost: 0 bytes in 0 blocks +==41408== still reachable: 24 bytes in 2 blocks +==41408== suppressed: 618,790 bytes in 8,246 blocks +==41408== Reachable blocks (those to which a pointer was found) are not shown. +==41408== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41408== +==41408== For lists of detected and suppressed errors, rerun with: -s +==41408== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 64 from 38) diff --git a/log-files/2024-09-20_21-41-09/TestExtrinsicPullModifier_valgrind.txt b/log-files/2024-09-20_21-41-09/TestExtrinsicPullModifier_valgrind.txt new file mode 100644 index 000000000..e02d2b8d8 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestExtrinsicPullModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26319== Memcheck, a memory error detector +==26319== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26319== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26319== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestExtrinsicPullModifier -malloc_debug -malloc_dump -memory_info +==26319== Parent PID: 24036 +==26319== +==26319== +==26319== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26319== Open file descriptor 12: +==26319== at 0xF83B07D: pipe (pipe.c:29) +==26319== by 0x196AD07D: ??? +==26319== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26319== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26319== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26319== by 0x10127D38: PetscInitialize (pinit.c:924) +==26319== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26319== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26319== by 0x1FC280: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26319== by 0x1F453F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26319== by 0x1F7DA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26319== by 0x1F7CA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26319== by 0x1F82B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26319== by 0x1F2D35: main (TestExtrinsicPullModifier.cpp:18) +==26319== +==26319== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26319== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==26319== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26319== by 0xF137822: ??? +==26319== by 0xF13796F: ??? +==26319== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26319== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26319== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26319== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26319== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26319== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26319== by 0x10127D38: PetscInitialize (pinit.c:924) +==26319== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26319== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26319== by 0x1FC280: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26319== by 0x1F453F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26319== by 0x1F7DA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26319== by 0x1F7CA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26319== by 0x1F82B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26319== by 0x1F2D35: main (TestExtrinsicPullModifier.cpp:18) +==26319== +==26319== Open file descriptor 113: +==26319== +==26319== +==26319== Open file descriptor 110: +==26319== +==26319== +==26319== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtrinsicPullModifier_valgrind.txt +==26319== +==26319== +==26319== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26319== +==26319== +==26319== +==26319== HEAP SUMMARY: +==26319== in use at exit: 618,350 bytes in 8,239 blocks +==26319== total heap usage: 223,369 allocs, 215,130 frees, 1,365,674,232 bytes allocated +==26319== +==26319== LEAK SUMMARY: +==26319== definitely lost: 0 bytes in 0 blocks +==26319== indirectly lost: 0 bytes in 0 blocks +==26319== possibly lost: 0 bytes in 0 blocks +==26319== still reachable: 56 bytes in 3 blocks +==26319== suppressed: 618,294 bytes in 8,236 blocks +==26319== Reachable blocks (those to which a pointer was found) are not shown. +==26319== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26319== +==26319== For lists of detected and suppressed errors, rerun with: -s +==26319== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-09-20_21-41-09/TestFemlabMeshReader_valgrind.txt b/log-files/2024-09-20_21-41-09/TestFemlabMeshReader_valgrind.txt new file mode 100644 index 000000000..a19133fb5 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestFemlabMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24590== Memcheck, a memory error detector +==24590== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24590== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24590== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestFemlabMeshReader -malloc_debug -malloc_dump -memory_info +==24590== Parent PID: 24036 +==24590== +==24590== +==24590== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24590== Open file descriptor 12: +==24590== at 0x690F07D: pipe (pipe.c:29) +==24590== by 0x100C307D: ??? +==24590== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24590== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24590== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24590== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24590== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24590== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24590== by 0x116D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24590== by 0x11236D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24590== by 0x114DBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24590== by 0x114C5E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24590== by 0x1152F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24590== by 0x110795: main (TestFemlabMeshReader.cpp:19) +==24590== +==24590== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24590== at 0x6913A1C: __open_nocancel (open64_nocancel.c:39) +==24590== by 0x6897BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24590== by 0x6590822: ??? +==24590== by 0x659096F: ??? +==24590== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24590== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24590== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24590== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24590== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24590== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24590== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24590== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24590== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24590== by 0x116D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24590== by 0x11236D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24590== by 0x114DBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24590== by 0x114C5E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24590== by 0x1152F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24590== by 0x110795: main (TestFemlabMeshReader.cpp:19) +==24590== +==24590== Open file descriptor 113: +==24590== +==24590== +==24590== Open file descriptor 110: +==24590== +==24590== +==24590== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFemlabMeshReader_valgrind.txt +==24590== +==24590== +==24590== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24590== +==24590== +==24590== +==24590== HEAP SUMMARY: +==24590== in use at exit: 618,222 bytes in 8,238 blocks +==24590== total heap usage: 68,512 allocs, 60,274 frees, 1,339,840,973 bytes allocated +==24590== +==24590== LEAK SUMMARY: +==24590== definitely lost: 0 bytes in 0 blocks +==24590== indirectly lost: 0 bytes in 0 blocks +==24590== possibly lost: 0 bytes in 0 blocks +==24590== still reachable: 24 bytes in 2 blocks +==24590== suppressed: 618,198 bytes in 8,236 blocks +==24590== Reachable blocks (those to which a pointer was found) are not shown. +==24590== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24590== +==24590== For lists of detected and suppressed errors, rerun with: -s +==24590== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt new file mode 100644 index 000000000..d372ad0f7 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41430== Memcheck, a memory error detector +==41430== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41430== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41430== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreReaderAbilityExtendedBidomainProblem -malloc_debug -malloc_dump -memory_info +==41430== Parent PID: 24036 +==41430== +==41430== +==41430== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41430== Open file descriptor 12: +==41430== at 0xA7DF07D: pipe (pipe.c:29) +==41430== by 0x1432407D: ??? +==41430== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41430== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41430== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41430== by 0xAB68D38: PetscInitialize (pinit.c:924) +==41430== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41430== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41430== by 0x128E4C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41430== by 0x123553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41430== by 0x126214: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41430== by 0x12610F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41430== by 0x126723: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41430== by 0x121D55: main (TestFibreReaderAbilityExtendedBidomainProblem.cpp:18) +==41430== +==41430== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41430== at 0xA7E3A1C: __open_nocancel (open64_nocancel.c:39) +==41430== by 0xA767BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41430== by 0xA101822: ??? +==41430== by 0xA10196F: ??? +==41430== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41430== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41430== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41430== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41430== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41430== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41430== by 0xAB68D38: PetscInitialize (pinit.c:924) +==41430== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41430== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41430== by 0x128E4C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41430== by 0x123553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41430== by 0x126214: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41430== by 0x12610F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41430== by 0x126723: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41430== by 0x121D55: main (TestFibreReaderAbilityExtendedBidomainProblem.cpp:18) +==41430== +==41430== Open file descriptor 113: +==41430== +==41430== +==41430== Open file descriptor 110: +==41430== +==41430== +==41430== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt +==41430== +==41430== +==41430== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41430== +==41430== +==41430== +==41430== HEAP SUMMARY: +==41430== in use at exit: 618,334 bytes in 8,238 blocks +==41430== total heap usage: 115,877 allocs, 107,639 frees, 1,342,959,777 bytes allocated +==41430== +==41430== LEAK SUMMARY: +==41430== definitely lost: 0 bytes in 0 blocks +==41430== indirectly lost: 0 bytes in 0 blocks +==41430== possibly lost: 0 bytes in 0 blocks +==41430== still reachable: 24 bytes in 2 blocks +==41430== suppressed: 618,310 bytes in 8,236 blocks +==41430== Reachable blocks (those to which a pointer was found) are not shown. +==41430== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41430== +==41430== For lists of detected and suppressed errors, rerun with: -s +==41430== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestFibreReader_valgrind.txt b/log-files/2024-09-20_21-41-09/TestFibreReader_valgrind.txt new file mode 100644 index 000000000..78cc46ca1 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestFibreReader_valgrind.txt @@ -0,0 +1,36 @@ +==41473== Memcheck, a memory error detector +==41473== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41473== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41473== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreReader -malloc_debug -malloc_dump -memory_info +==41473== Parent PID: 24036 +==41473== +==41473== +==41473== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41473== Open file descriptor 113: +==41473== +==41473== +==41473== Open file descriptor 110: +==41473== +==41473== +==41473== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreReader_valgrind.txt +==41473== +==41473== +==41473== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41473== +==41473== +==41473== +==41473== HEAP SUMMARY: +==41473== in use at exit: 24 bytes in 2 blocks +==41473== total heap usage: 9,356 allocs, 9,354 frees, 3,309,570 bytes allocated +==41473== +==41473== LEAK SUMMARY: +==41473== definitely lost: 0 bytes in 0 blocks +==41473== indirectly lost: 0 bytes in 0 blocks +==41473== possibly lost: 0 bytes in 0 blocks +==41473== still reachable: 24 bytes in 2 blocks +==41473== suppressed: 0 bytes in 0 blocks +==41473== Reachable blocks (those to which a pointer was found) are not shown. +==41473== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41473== +==41473== For lists of detected and suppressed errors, rerun with: -s +==41473== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-20_21-41-09/TestFibreWriter_valgrind.txt b/log-files/2024-09-20_21-41-09/TestFibreWriter_valgrind.txt new file mode 100644 index 000000000..4f952589c --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestFibreWriter_valgrind.txt @@ -0,0 +1,73 @@ +==41475== Memcheck, a memory error detector +==41475== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41475== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41475== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreWriter -malloc_debug -malloc_dump -memory_info +==41475== Parent PID: 24036 +==41475== +==41475== +==41475== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41475== Open file descriptor 12: +==41475== at 0x9A2107D: pipe (pipe.c:29) +==41475== by 0x1432607D: ??? +==41475== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41475== by 0x9656418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41475== by 0x95EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41475== by 0x82C3D38: PetscInitialize (pinit.c:924) +==41475== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41475== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41475== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41475== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41475== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41475== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41475== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41475== by 0x113DD5: main (TestFibreWriter.cpp:18) +==41475== +==41475== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41475== at 0x9A25A1C: __open_nocancel (open64_nocancel.c:39) +==41475== by 0x99A9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41475== by 0x9553822: ??? +==41475== by 0x955396F: ??? +==41475== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41475== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41475== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41475== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41475== by 0x9656418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41475== by 0x95EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41475== by 0x82C3D38: PetscInitialize (pinit.c:924) +==41475== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41475== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41475== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41475== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41475== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41475== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41475== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41475== by 0x113DD5: main (TestFibreWriter.cpp:18) +==41475== +==41475== Open file descriptor 113: +==41475== +==41475== +==41475== Open file descriptor 110: +==41475== +==41475== +==41475== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreWriter_valgrind.txt +==41475== +==41475== +==41475== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41475== +==41475== +==41475== +==41475== HEAP SUMMARY: +==41475== in use at exit: 618,334 bytes in 8,238 blocks +==41475== total heap usage: 57,353 allocs, 49,115 frees, 1,339,751,137 bytes allocated +==41475== +==41475== LEAK SUMMARY: +==41475== definitely lost: 0 bytes in 0 blocks +==41475== indirectly lost: 0 bytes in 0 blocks +==41475== possibly lost: 0 bytes in 0 blocks +==41475== still reachable: 24 bytes in 2 blocks +==41475== suppressed: 618,310 bytes in 8,236 blocks +==41475== Reachable blocks (those to which a pointer was found) are not shown. +==41475== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41475== +==41475== For lists of detected and suppressed errors, rerun with: -s +==41475== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestFileComparison_valgrind.txt b/log-files/2024-09-20_21-41-09/TestFileComparison_valgrind.txt new file mode 100644 index 000000000..40dfa28d6 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestFileComparison_valgrind.txt @@ -0,0 +1,73 @@ +==24129== Memcheck, a memory error detector +==24129== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24129== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24129== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFileComparison -malloc_debug -malloc_dump -memory_info +==24129== Parent PID: 24036 +==24129== +==24129== +==24129== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24129== Open file descriptor 12: +==24129== at 0x4CB207D: pipe (pipe.c:29) +==24129== by 0xAEA507D: ??? +==24129== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24129== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24129== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24129== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24129== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24129== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24129== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24129== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24129== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24129== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24129== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24129== by 0x110B35: main (TestFileComparison.cpp:18) +==24129== +==24129== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24129== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24129== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24129== by 0x4935822: ??? +==24129== by 0x493596F: ??? +==24129== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24129== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24129== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24129== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24129== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24129== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24129== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24129== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24129== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24129== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24129== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24129== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24129== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24129== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24129== by 0x110B35: main (TestFileComparison.cpp:18) +==24129== +==24129== Open file descriptor 113: +==24129== +==24129== +==24129== Open file descriptor 110: +==24129== +==24129== +==24129== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFileComparison_valgrind.txt +==24129== +==24129== +==24129== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24129== +==24129== +==24129== +==24129== HEAP SUMMARY: +==24129== in use at exit: 617,838 bytes in 8,238 blocks +==24129== total heap usage: 45,391 allocs, 37,153 frees, 1,338,617,883 bytes allocated +==24129== +==24129== LEAK SUMMARY: +==24129== definitely lost: 0 bytes in 0 blocks +==24129== indirectly lost: 0 bytes in 0 blocks +==24129== possibly lost: 0 bytes in 0 blocks +==24129== still reachable: 24 bytes in 2 blocks +==24129== suppressed: 617,814 bytes in 8,236 blocks +==24129== Reachable blocks (those to which a pointer was found) are not shown. +==24129== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24129== +==24129== For lists of detected and suppressed errors, rerun with: -s +==24129== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestFileFinder_valgrind.txt b/log-files/2024-09-20_21-41-09/TestFileFinder_valgrind.txt new file mode 100644 index 000000000..41df084fa --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestFileFinder_valgrind.txt @@ -0,0 +1,73 @@ +==24128== Memcheck, a memory error detector +==24128== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24128== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24128== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFileFinder -malloc_debug -malloc_dump -memory_info +==24128== Parent PID: 24036 +==24128== +==24128== +==24128== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24128== Open file descriptor 12: +==24128== at 0x616907D: pipe (pipe.c:29) +==24128== by 0xAEA507D: ??? +==24128== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24128== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24128== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24128== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24128== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24128== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24128== by 0x118727: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24128== by 0x113B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24128== by 0x1166DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24128== by 0x11657A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24128== by 0x116C11: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24128== by 0x111FB5: main (TestFileFinder.cpp:19) +==24128== +==24128== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24128== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24128== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24128== by 0x5CB3822: ??? +==24128== by 0x5CB396F: ??? +==24128== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24128== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24128== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24128== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24128== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24128== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24128== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24128== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24128== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24128== by 0x118727: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24128== by 0x113B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24128== by 0x1166DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24128== by 0x11657A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24128== by 0x116C11: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24128== by 0x111FB5: main (TestFileFinder.cpp:19) +==24128== +==24128== Open file descriptor 113: +==24128== +==24128== +==24128== Open file descriptor 110: +==24128== +==24128== +==24128== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFileFinder_valgrind.txt +==24128== +==24128== +==24128== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24128== +==24128== +==24128== +==24128== HEAP SUMMARY: +==24128== in use at exit: 617,838 bytes in 8,238 blocks +==24128== total heap usage: 48,409 allocs, 40,171 frees, 1,339,904,094 bytes allocated +==24128== +==24128== LEAK SUMMARY: +==24128== definitely lost: 0 bytes in 0 blocks +==24128== indirectly lost: 0 bytes in 0 blocks +==24128== possibly lost: 0 bytes in 0 blocks +==24128== still reachable: 24 bytes in 2 blocks +==24128== suppressed: 617,814 bytes in 8,236 blocks +==24128== Reachable blocks (those to which a pointer was found) are not shown. +==24128== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24128== +==24128== For lists of detected and suppressed errors, rerun with: -s +==24128== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestFineCoarseMeshPair_valgrind.txt b/log-files/2024-09-20_21-41-09/TestFineCoarseMeshPair_valgrind.txt new file mode 100644 index 000000000..8c5aad9ae --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestFineCoarseMeshPair_valgrind.txt @@ -0,0 +1,73 @@ +==25222== Memcheck, a memory error detector +==25222== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25222== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25222== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestFineCoarseMeshPair -malloc_debug -malloc_dump -memory_info +==25222== Parent PID: 24036 +==25222== +==25222== +==25222== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25222== Open file descriptor 12: +==25222== at 0x6FF107D: pipe (pipe.c:29) +==25222== by 0x104D507D: ??? +==25222== by 0xC36A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25222== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25222== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25222== by 0x7340D38: PetscInitialize (pinit.c:924) +==25222== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25222== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25222== by 0x1229DA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25222== by 0x11DBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25222== by 0x120762: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25222== by 0x120602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25222== by 0x120C99: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25222== by 0x11C015: main (TestFineCoarseMeshPair.cpp:19) +==25222== +==25222== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25222== at 0x6FF5A1C: __open_nocancel (open64_nocancel.c:39) +==25222== by 0x6F79BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25222== by 0x692F822: ??? +==25222== by 0x692F96F: ??? +==25222== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25222== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25222== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25222== by 0xC36A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25222== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25222== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25222== by 0x7340D38: PetscInitialize (pinit.c:924) +==25222== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25222== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25222== by 0x1229DA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25222== by 0x11DBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25222== by 0x120762: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25222== by 0x120602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25222== by 0x120C99: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25222== by 0x11C015: main (TestFineCoarseMeshPair.cpp:19) +==25222== +==25222== Open file descriptor 113: +==25222== +==25222== +==25222== Open file descriptor 110: +==25222== +==25222== +==25222== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFineCoarseMeshPair_valgrind.txt +==25222== +==25222== +==25222== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25222== +==25222== +==25222== +==25222== HEAP SUMMARY: +==25222== in use at exit: 618,254 bytes in 8,238 blocks +==25222== total heap usage: 1,511,422 allocs, 1,503,184 frees, 1,478,950,304 bytes allocated +==25222== +==25222== LEAK SUMMARY: +==25222== definitely lost: 0 bytes in 0 blocks +==25222== indirectly lost: 0 bytes in 0 blocks +==25222== possibly lost: 0 bytes in 0 blocks +==25222== still reachable: 24 bytes in 2 blocks +==25222== suppressed: 618,230 bytes in 8,236 blocks +==25222== Reachable blocks (those to which a pointer was found) are not shown. +==25222== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25222== +==25222== For lists of detected and suppressed errors, rerun with: -s +==25222== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestFloatingPointDivisionByZeroPetsc_valgrind.txt b/log-files/2024-09-20_21-41-09/TestFloatingPointDivisionByZeroPetsc_valgrind.txt new file mode 100644 index 000000000..39f1f1bce --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestFloatingPointDivisionByZeroPetsc_valgrind.txt @@ -0,0 +1,73 @@ +==24131== Memcheck, a memory error detector +==24131== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24131== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24131== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFloatingPointDivisionByZeroPetsc -malloc_debug -malloc_dump -memory_info +==24131== Parent PID: 24036 +==24131== +==24131== +==24131== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24131== Open file descriptor 12: +==24131== at 0x4CB207D: pipe (pipe.c:29) +==24131== by 0xAEA507D: ??? +==24131== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24131== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24131== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24131== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24131== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24131== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24131== by 0x1123B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24131== by 0x10DFCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24131== by 0x110452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24131== by 0x1102F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24131== by 0x110989: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24131== by 0x10C3F5: main (TestFloatingPointDivisionByZeroPetsc.cpp:19) +==24131== +==24131== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24131== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24131== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24131== by 0x4935822: ??? +==24131== by 0x493596F: ??? +==24131== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24131== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24131== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24131== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24131== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24131== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24131== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24131== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24131== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24131== by 0x1123B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24131== by 0x10DFCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24131== by 0x110452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24131== by 0x1102F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24131== by 0x110989: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24131== by 0x10C3F5: main (TestFloatingPointDivisionByZeroPetsc.cpp:19) +==24131== +==24131== Open file descriptor 113: +==24131== +==24131== +==24131== Open file descriptor 110: +==24131== +==24131== +==24131== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFloatingPointDivisionByZeroPetsc_valgrind.txt +==24131== +==24131== +==24131== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24131== +==24131== +==24131== +==24131== HEAP SUMMARY: +==24131== in use at exit: 617,838 bytes in 8,238 blocks +==24131== total heap usage: 44,910 allocs, 36,672 frees, 1,338,159,563 bytes allocated +==24131== +==24131== LEAK SUMMARY: +==24131== definitely lost: 0 bytes in 0 blocks +==24131== indirectly lost: 0 bytes in 0 blocks +==24131== possibly lost: 0 bytes in 0 blocks +==24131== still reachable: 24 bytes in 2 blocks +==24131== suppressed: 617,814 bytes in 8,236 blocks +==24131== Reachable blocks (those to which a pointer was found) are not shown. +==24131== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24131== +==24131== For lists of detected and suppressed errors, rerun with: -s +==24131== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestFloatingPointDivisionByZero_valgrind.txt b/log-files/2024-09-20_21-41-09/TestFloatingPointDivisionByZero_valgrind.txt new file mode 100644 index 000000000..f368753a2 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestFloatingPointDivisionByZero_valgrind.txt @@ -0,0 +1,73 @@ +==24130== Memcheck, a memory error detector +==24130== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24130== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24130== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFloatingPointDivisionByZero -malloc_debug -malloc_dump -memory_info +==24130== Parent PID: 24036 +==24130== +==24130== +==24130== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24130== Open file descriptor 12: +==24130== at 0x616907D: pipe (pipe.c:29) +==24130== by 0xAEA507D: ??? +==24130== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24130== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24130== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24130== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24130== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24130== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24130== by 0x11245F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24130== by 0x10E06D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24130== by 0x1104F2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24130== by 0x110392: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24130== by 0x110A29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24130== by 0x10C495: main (TestFloatingPointDivisionByZero.cpp:19) +==24130== +==24130== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24130== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24130== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24130== by 0x5CB3822: ??? +==24130== by 0x5CB396F: ??? +==24130== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24130== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24130== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24130== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24130== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24130== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24130== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24130== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24130== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24130== by 0x11245F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24130== by 0x10E06D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24130== by 0x1104F2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24130== by 0x110392: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24130== by 0x110A29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24130== by 0x10C495: main (TestFloatingPointDivisionByZero.cpp:19) +==24130== +==24130== Open file descriptor 113: +==24130== +==24130== +==24130== Open file descriptor 110: +==24130== +==24130== +==24130== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFloatingPointDivisionByZero_valgrind.txt +==24130== +==24130== +==24130== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24130== +==24130== +==24130== +==24130== HEAP SUMMARY: +==24130== in use at exit: 617,838 bytes in 8,238 blocks +==24130== total heap usage: 44,908 allocs, 36,670 frees, 1,338,159,087 bytes allocated +==24130== +==24130== LEAK SUMMARY: +==24130== definitely lost: 0 bytes in 0 blocks +==24130== indirectly lost: 0 bytes in 0 blocks +==24130== possibly lost: 0 bytes in 0 blocks +==24130== still reachable: 24 bytes in 2 blocks +==24130== suppressed: 617,814 bytes in 8,236 blocks +==24130== Reachable blocks (those to which a pointer was found) are not shown. +==24130== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24130== +==24130== For lists of detected and suppressed errors, rerun with: -s +==24130== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestFluidSource_valgrind.txt b/log-files/2024-09-20_21-41-09/TestFluidSource_valgrind.txt new file mode 100644 index 000000000..8c79b40db --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestFluidSource_valgrind.txt @@ -0,0 +1,73 @@ +==24799== Memcheck, a memory error detector +==24799== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24799== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24799== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestFluidSource -malloc_debug -malloc_dump -memory_info +==24799== Parent PID: 24036 +==24799== +==24799== +==24799== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24799== Open file descriptor 12: +==24799== at 0x7DC407D: pipe (pipe.c:29) +==24799== by 0x100C307D: ??? +==24799== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24799== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24799== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24799== by 0x667ED38: PetscInitialize (pinit.c:924) +==24799== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24799== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24799== by 0x11576F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24799== by 0x110FF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24799== by 0x113510: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24799== by 0x11340B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24799== by 0x113A1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24799== by 0x10F7F5: main (TestFluidSource.cpp:18) +==24799== +==24799== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24799== at 0x7DC8A1C: __open_nocancel (open64_nocancel.c:39) +==24799== by 0x7D4CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24799== by 0x790E822: ??? +==24799== by 0x790E96F: ??? +==24799== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24799== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24799== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24799== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24799== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24799== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24799== by 0x667ED38: PetscInitialize (pinit.c:924) +==24799== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24799== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24799== by 0x11576F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24799== by 0x110FF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24799== by 0x113510: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24799== by 0x11340B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24799== by 0x113A1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24799== by 0x10F7F5: main (TestFluidSource.cpp:18) +==24799== +==24799== Open file descriptor 113: +==24799== +==24799== +==24799== Open file descriptor 110: +==24799== +==24799== +==24799== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFluidSource_valgrind.txt +==24799== +==24799== +==24799== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24799== +==24799== +==24799== +==24799== HEAP SUMMARY: +==24799== in use at exit: 618,222 bytes in 8,238 blocks +==24799== total heap usage: 47,306 allocs, 39,068 frees, 1,338,381,372 bytes allocated +==24799== +==24799== LEAK SUMMARY: +==24799== definitely lost: 0 bytes in 0 blocks +==24799== indirectly lost: 0 bytes in 0 blocks +==24799== possibly lost: 0 bytes in 0 blocks +==24799== still reachable: 24 bytes in 2 blocks +==24799== suppressed: 618,198 bytes in 8,236 blocks +==24799== Reachable blocks (those to which a pointer was found) are not shown. +==24799== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24799== +==24799== For lists of detected and suppressed errors, rerun with: -s +==24799== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestForces_valgrind.txt b/log-files/2024-09-20_21-41-09/TestForces_valgrind.txt new file mode 100644 index 000000000..43fbdaa2d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestForces_valgrind.txt @@ -0,0 +1,73 @@ +==26028== Memcheck, a memory error detector +==26028== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26028== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26028== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestForces -malloc_debug -malloc_dump -memory_info +==26028== Parent PID: 24036 +==26028== +==26028== +==26028== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26028== Open file descriptor 12: +==26028== at 0xF92407D: pipe (pipe.c:29) +==26028== by 0x196AD07D: ??? +==26028== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26028== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26028== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26028== by 0x10210D38: PetscInitialize (pinit.c:924) +==26028== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26028== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26028== by 0x14FA72: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26028== by 0x147FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26028== by 0x14B1C0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26028== by 0x14B060: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26028== by 0x14B6F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26028== by 0x1463E5: main (TestForces.cpp:19) +==26028== +==26028== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26028== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==26028== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26028== by 0xF137822: ??? +==26028== by 0xF13796F: ??? +==26028== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26028== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26028== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26028== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26028== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26028== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26028== by 0x10210D38: PetscInitialize (pinit.c:924) +==26028== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26028== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26028== by 0x14FA72: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26028== by 0x147FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26028== by 0x14B1C0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26028== by 0x14B060: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26028== by 0x14B6F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26028== by 0x1463E5: main (TestForces.cpp:19) +==26028== +==26028== Open file descriptor 113: +==26028== +==26028== +==26028== Open file descriptor 110: +==26028== +==26028== +==26028== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestForces_valgrind.txt +==26028== +==26028== +==26028== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26028== +==26028== +==26028== +==26028== HEAP SUMMARY: +==26028== in use at exit: 618,350 bytes in 8,239 blocks +==26028== total heap usage: 100,084 allocs, 91,845 frees, 1,344,048,662 bytes allocated +==26028== +==26028== LEAK SUMMARY: +==26028== definitely lost: 0 bytes in 0 blocks +==26028== indirectly lost: 0 bytes in 0 blocks +==26028== possibly lost: 0 bytes in 0 blocks +==26028== still reachable: 56 bytes in 3 blocks +==26028== suppressed: 618,294 bytes in 8,236 blocks +==26028== Reachable blocks (those to which a pointer was found) are not shown. +==26028== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26028== +==26028== For lists of detected and suppressed errors, rerun with: -s +==26028== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestFourthOrderTensor_valgrind.txt b/log-files/2024-09-20_21-41-09/TestFourthOrderTensor_valgrind.txt new file mode 100644 index 000000000..560b33ff3 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestFourthOrderTensor_valgrind.txt @@ -0,0 +1,73 @@ +==24338== Memcheck, a memory error detector +==24338== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24338== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24338== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestFourthOrderTensor -malloc_debug -malloc_dump -memory_info +==24338== Parent PID: 24036 +==24338== +==24338== +==24338== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24338== Open file descriptor 12: +==24338== at 0x4CB407D: pipe (pipe.c:29) +==24338== by 0xAEA507D: ??? +==24338== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24338== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24338== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24338== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24338== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24338== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24338== by 0x114306: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24338== by 0x10FD33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24338== by 0x1122B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24338== by 0x1121AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24338== by 0x1127BF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24338== by 0x10E535: main (TestFourthOrderTensor.cpp:18) +==24338== +==24338== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24338== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==24338== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24338== by 0x4935822: ??? +==24338== by 0x493596F: ??? +==24338== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24338== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24338== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24338== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24338== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24338== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24338== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24338== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24338== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24338== by 0x114306: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24338== by 0x10FD33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24338== by 0x1122B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24338== by 0x1121AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24338== by 0x1127BF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24338== by 0x10E535: main (TestFourthOrderTensor.cpp:18) +==24338== +==24338== Open file descriptor 113: +==24338== +==24338== +==24338== Open file descriptor 110: +==24338== +==24338== +==24338== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFourthOrderTensor_valgrind.txt +==24338== +==24338== +==24338== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24338== +==24338== +==24338== +==24338== HEAP SUMMARY: +==24338== in use at exit: 617,838 bytes in 8,238 blocks +==24338== total heap usage: 44,931 allocs, 36,693 frees, 1,338,167,109 bytes allocated +==24338== +==24338== LEAK SUMMARY: +==24338== definitely lost: 0 bytes in 0 blocks +==24338== indirectly lost: 0 bytes in 0 blocks +==24338== possibly lost: 0 bytes in 0 blocks +==24338== still reachable: 24 bytes in 2 blocks +==24338== suppressed: 617,814 bytes in 8,236 blocks +==24338== Reachable blocks (those to which a pointer was found) are not shown. +==24338== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24338== +==24338== For lists of detected and suppressed errors, rerun with: -s +==24338== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestGIModifiedModels_valgrind.txt b/log-files/2024-09-20_21-41-09/TestGIModifiedModels_valgrind.txt new file mode 100644 index 000000000..3006b42ac --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestGIModifiedModels_valgrind.txt @@ -0,0 +1,73 @@ +==41439== Memcheck, a memory error detector +==41439== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41439== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41439== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestGIModifiedModels -malloc_debug -malloc_dump -memory_info +==41439== Parent PID: 24036 +==41439== +==41439== +==41439== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41439== Open file descriptor 12: +==41439== at 0x886507D: pipe (pipe.c:29) +==41439== by 0x1432407D: ??? +==41439== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41439== by 0x9F5E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41439== by 0x9EF7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41439== by 0x8BEED38: PetscInitialize (pinit.c:924) +==41439== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41439== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41439== by 0x12C2F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41439== by 0x126ECB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41439== by 0x129968: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41439== by 0x129808: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41439== by 0x129E9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41439== by 0x122165: main (TestGIModifiedModels.cpp:19) +==41439== +==41439== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41439== at 0x8869A1C: __open_nocancel (open64_nocancel.c:39) +==41439== by 0x87EDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41439== by 0x848A822: ??? +==41439== by 0x848A96F: ??? +==41439== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41439== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41439== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41439== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41439== by 0x9F5E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41439== by 0x9EF7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41439== by 0x8BEED38: PetscInitialize (pinit.c:924) +==41439== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41439== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41439== by 0x12C2F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41439== by 0x126ECB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41439== by 0x129968: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41439== by 0x129808: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41439== by 0x129E9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41439== by 0x122165: main (TestGIModifiedModels.cpp:19) +==41439== +==41439== Open file descriptor 113: +==41439== +==41439== +==41439== Open file descriptor 110: +==41439== +==41439== +==41439== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGIModifiedModels_valgrind.txt +==41439== +==41439== +==41439== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41439== +==41439== +==41439== +==41439== HEAP SUMMARY: +==41439== in use at exit: 618,263 bytes in 8,234 blocks +==41439== total heap usage: 1,453,372 allocs, 1,445,138 frees, 1,614,517,521 bytes allocated +==41439== +==41439== LEAK SUMMARY: +==41439== definitely lost: 0 bytes in 0 blocks +==41439== indirectly lost: 0 bytes in 0 blocks +==41439== possibly lost: 0 bytes in 0 blocks +==41439== still reachable: 24 bytes in 2 blocks +==41439== suppressed: 618,239 bytes in 8,232 blocks +==41439== Reachable blocks (those to which a pointer was found) are not shown. +==41439== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41439== +==41439== For lists of detected and suppressed errors, rerun with: -s +==41439== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-20_21-41-09/TestGRL1IvpOdeSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestGRL1IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..1564aa8bb --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestGRL1IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24943== Memcheck, a memory error detector +==24943== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24943== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24943== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestGRL1IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24943== Parent PID: 24036 +==24943== +==24943== +==24943== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24943== Open file descriptor 12: +==24943== at 0x503907D: pipe (pipe.c:29) +==24943== by 0xB1E607D: ??? +==24943== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24943== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24943== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24943== by 0x5308D38: PetscInitialize (pinit.c:924) +==24943== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24943== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24943== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24943== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24943== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24943== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24943== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24943== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) +==24943== +==24943== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24943== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24943== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24943== by 0x4B77822: ??? +==24943== by 0x4B7796F: ??? +==24943== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24943== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24943== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24943== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24943== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24943== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24943== by 0x5308D38: PetscInitialize (pinit.c:924) +==24943== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24943== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24943== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24943== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24943== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24943== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24943== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24943== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) +==24943== +==24943== Open file descriptor 113: +==24943== +==24943== +==24943== Open file descriptor 110: +==24943== +==24943== +==24943== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGRL1IvpOdeSolver_valgrind.txt +==24943== +==24943== +==24943== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24943== +==24943== +==24943== +==24943== HEAP SUMMARY: +==24943== in use at exit: 617,902 bytes in 8,238 blocks +==24943== total heap usage: 50,997 allocs, 42,759 frees, 1,338,665,451 bytes allocated +==24943== +==24943== LEAK SUMMARY: +==24943== definitely lost: 0 bytes in 0 blocks +==24943== indirectly lost: 0 bytes in 0 blocks +==24943== possibly lost: 0 bytes in 0 blocks +==24943== still reachable: 24 bytes in 2 blocks +==24943== suppressed: 617,878 bytes in 8,236 blocks +==24943== Reachable blocks (those to which a pointer was found) are not shown. +==24943== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24943== +==24943== For lists of detected and suppressed errors, rerun with: -s +==24943== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestGRL2IvpOdeSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestGRL2IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..9c600a697 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestGRL2IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24944== Memcheck, a memory error detector +==24944== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24944== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24944== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestGRL2IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24944== Parent PID: 24036 +==24944== +==24944== +==24944== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24944== Open file descriptor 12: +==24944== at 0x503907D: pipe (pipe.c:29) +==24944== by 0xB1E607D: ??? +==24944== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24944== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24944== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24944== by 0x5308D38: PetscInitialize (pinit.c:924) +==24944== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24944== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24944== by 0x127082: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24944== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24944== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24944== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24944== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24944== by 0x11EEA5: main (TestGRL2IvpOdeSolver.cpp:19) +==24944== +==24944== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24944== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24944== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24944== by 0x4B77822: ??? +==24944== by 0x4B7796F: ??? +==24944== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24944== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24944== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24944== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24944== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24944== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24944== by 0x5308D38: PetscInitialize (pinit.c:924) +==24944== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24944== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24944== by 0x127082: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24944== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24944== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24944== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24944== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24944== by 0x11EEA5: main (TestGRL2IvpOdeSolver.cpp:19) +==24944== +==24944== Open file descriptor 113: +==24944== +==24944== +==24944== Open file descriptor 110: +==24944== +==24944== +==24944== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGRL2IvpOdeSolver_valgrind.txt +==24944== +==24944== +==24944== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24944== +==24944== +==24944== +==24944== HEAP SUMMARY: +==24944== in use at exit: 617,902 bytes in 8,238 blocks +==24944== total heap usage: 51,374 allocs, 43,136 frees, 1,338,714,742 bytes allocated +==24944== +==24944== LEAK SUMMARY: +==24944== definitely lost: 0 bytes in 0 blocks +==24944== indirectly lost: 0 bytes in 0 blocks +==24944== possibly lost: 0 bytes in 0 blocks +==24944== still reachable: 24 bytes in 2 blocks +==24944== suppressed: 617,878 bytes in 8,236 blocks +==24944== Reachable blocks (those to which a pointer was found) are not shown. +==24944== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24944== +==24944== For lists of detected and suppressed errors, rerun with: -s +==24944== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestGaussianQuadratureRule_valgrind.txt b/log-files/2024-09-20_21-41-09/TestGaussianQuadratureRule_valgrind.txt new file mode 100644 index 000000000..0474ed859 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestGaussianQuadratureRule_valgrind.txt @@ -0,0 +1,73 @@ +==25234== Memcheck, a memory error detector +==25234== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25234== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25234== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestGaussianQuadratureRule -malloc_debug -malloc_dump -memory_info +==25234== Parent PID: 24036 +==25234== +==25234== +==25234== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25234== Open file descriptor 12: +==25234== at 0x6D9307D: pipe (pipe.c:29) +==25234== by 0x104D507D: ??? +==25234== by 0xC31D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25234== by 0x8807418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25234== by 0x87A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25234== by 0x70E2D38: PetscInitialize (pinit.c:924) +==25234== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25234== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25234== by 0x11A084: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25234== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25234== by 0x1180E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25234== by 0x117F82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25234== by 0x118619: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25234== by 0x113AB5: main (TestGaussianQuadratureRule.cpp:19) +==25234== +==25234== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25234== at 0x6D97A1C: __open_nocancel (open64_nocancel.c:39) +==25234== by 0x6D1BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25234== by 0x692F822: ??? +==25234== by 0x692F96F: ??? +==25234== by 0xC3C26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25234== by 0xC3C2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25234== by 0xC378922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25234== by 0xC31D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25234== by 0x8807418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25234== by 0x87A0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25234== by 0x70E2D38: PetscInitialize (pinit.c:924) +==25234== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25234== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25234== by 0x11A084: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25234== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25234== by 0x1180E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25234== by 0x117F82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25234== by 0x118619: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25234== by 0x113AB5: main (TestGaussianQuadratureRule.cpp:19) +==25234== +==25234== Open file descriptor 113: +==25234== +==25234== +==25234== Open file descriptor 110: +==25234== +==25234== +==25234== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGaussianQuadratureRule_valgrind.txt +==25234== +==25234== +==25234== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25234== +==25234== +==25234== +==25234== HEAP SUMMARY: +==25234== in use at exit: 618,254 bytes in 8,238 blocks +==25234== total heap usage: 47,634 allocs, 39,396 frees, 1,338,402,962 bytes allocated +==25234== +==25234== LEAK SUMMARY: +==25234== definitely lost: 0 bytes in 0 blocks +==25234== indirectly lost: 0 bytes in 0 blocks +==25234== possibly lost: 0 bytes in 0 blocks +==25234== still reachable: 24 bytes in 2 blocks +==25234== suppressed: 618,230 bytes in 8,236 blocks +==25234== Reachable blocks (those to which a pointer was found) are not shown. +==25234== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25234== +==25234== For lists of detected and suppressed errors, rerun with: -s +==25234== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestGeneralizedRushLarsen_valgrind.txt b/log-files/2024-09-20_21-41-09/TestGeneralizedRushLarsen_valgrind.txt new file mode 100644 index 000000000..9230edac3 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestGeneralizedRushLarsen_valgrind.txt @@ -0,0 +1,73 @@ +==41877== Memcheck, a memory error detector +==41877== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41877== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41877== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestGeneralizedRushLarsen -malloc_debug -malloc_dump -memory_info +==41877== Parent PID: 24036 +==41877== +==41877== +==41877== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41877== Open file descriptor 12: +==41877== at 0x87AE07D: pipe (pipe.c:29) +==41877== by 0x1432407D: ??? +==41877== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41877== by 0x9EA9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41877== by 0x9E42D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41877== by 0x8B39D38: PetscInitialize (pinit.c:924) +==41877== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41877== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41877== by 0x11C6A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41877== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41877== by 0x11A2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41877== by 0x11A14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41877== by 0x11A7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41877== by 0x115CD5: main (TestGeneralizedRushLarsen.cpp:19) +==41877== +==41877== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41877== at 0x87B2A1C: __open_nocancel (open64_nocancel.c:39) +==41877== by 0x8736BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41877== by 0x8417822: ??? +==41877== by 0x841796F: ??? +==41877== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41877== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41877== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41877== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41877== by 0x9EA9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41877== by 0x9E42D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41877== by 0x8B39D38: PetscInitialize (pinit.c:924) +==41877== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41877== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41877== by 0x11C6A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41877== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41877== by 0x11A2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41877== by 0x11A14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41877== by 0x11A7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41877== by 0x115CD5: main (TestGeneralizedRushLarsen.cpp:19) +==41877== +==41877== Open file descriptor 113: +==41877== +==41877== +==41877== Open file descriptor 110: +==41877== +==41877== +==41877== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGeneralizedRushLarsen_valgrind.txt +==41877== +==41877== +==41877== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41877== +==41877== +==41877== +==41877== HEAP SUMMARY: +==41877== in use at exit: 621,868 bytes in 8,242 blocks +==41877== total heap usage: 3,054,221 allocs, 3,045,979 frees, 1,612,720,099 bytes allocated +==41877== +==41877== LEAK SUMMARY: +==41877== definitely lost: 0 bytes in 0 blocks +==41877== indirectly lost: 0 bytes in 0 blocks +==41877== possibly lost: 0 bytes in 0 blocks +==41877== still reachable: 3,629 bytes in 10 blocks +==41877== suppressed: 618,239 bytes in 8,232 blocks +==41877== Reachable blocks (those to which a pointer was found) are not shown. +==41877== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41877== +==41877== For lists of detected and suppressed errors, rerun with: -s +==41877== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2024-09-20_21-41-09/TestGenericEventHandler_valgrind.txt b/log-files/2024-09-20_21-41-09/TestGenericEventHandler_valgrind.txt new file mode 100644 index 000000000..b21d245f6 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestGenericEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24157== Memcheck, a memory error detector +==24157== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24157== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24157== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestGenericEventHandler -malloc_debug -malloc_dump -memory_info +==24157== Parent PID: 24036 +==24157== +==24157== +==24157== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24157== Open file descriptor 12: +==24157== at 0x4DEB07D: pipe (pipe.c:29) +==24157== by 0xAEA307D: ??? +==24157== by 0x643A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24157== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24157== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24157== by 0x5036D38: PetscInitialize (pinit.c:924) +==24157== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24157== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24157== by 0x1166EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24157== by 0x11164D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24157== by 0x11478C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24157== by 0x11462C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24157== by 0x114CC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24157== by 0x10FA75: main (TestGenericEventHandler.cpp:19) +==24157== +==24157== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24157== at 0x4DEFA1C: __open_nocancel (open64_nocancel.c:39) +==24157== by 0x4D73BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24157== by 0x4935822: ??? +==24157== by 0x493596F: ??? +==24157== by 0x64E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24157== by 0x64E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24157== by 0x6497922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24157== by 0x643A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24157== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24157== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24157== by 0x5036D38: PetscInitialize (pinit.c:924) +==24157== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24157== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24157== by 0x1166EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24157== by 0x11164D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24157== by 0x11478C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24157== by 0x11462C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24157== by 0x114CC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24157== by 0x10FA75: main (TestGenericEventHandler.cpp:19) +==24157== +==24157== Open file descriptor 113: +==24157== +==24157== +==24157== Open file descriptor 110: +==24157== +==24157== +==24157== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGenericEventHandler_valgrind.txt +==24157== +==24157== +==24157== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24157== +==24157== +==24157== +==24157== HEAP SUMMARY: +==24157== in use at exit: 617,838 bytes in 8,238 blocks +==24157== total heap usage: 44,985 allocs, 36,747 frees, 1,338,168,877 bytes allocated +==24157== +==24157== LEAK SUMMARY: +==24157== definitely lost: 0 bytes in 0 blocks +==24157== indirectly lost: 0 bytes in 0 blocks +==24157== possibly lost: 0 bytes in 0 blocks +==24157== still reachable: 24 bytes in 2 blocks +==24157== suppressed: 617,814 bytes in 8,236 blocks +==24157== Reachable blocks (those to which a pointer was found) are not shown. +==24157== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24157== +==24157== For lists of detected and suppressed errors, rerun with: -s +==24157== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestGmshMeshReader_valgrind.txt b/log-files/2024-09-20_21-41-09/TestGmshMeshReader_valgrind.txt new file mode 100644 index 000000000..7df58b817 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestGmshMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24591== Memcheck, a memory error detector +==24591== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24591== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24591== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestGmshMeshReader -malloc_debug -malloc_dump -memory_info +==24591== Parent PID: 24036 +==24591== +==24591== +==24591== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24591== Open file descriptor 12: +==24591== at 0x6D3B07D: pipe (pipe.c:29) +==24591== by 0x100C507D: ??? +==24591== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24591== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24591== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24591== by 0x7017D38: PetscInitialize (pinit.c:924) +==24591== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24591== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24591== by 0x1235DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24591== by 0x11EA0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24591== by 0x12152A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24591== by 0x1213CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24591== by 0x121A61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24591== by 0x11CE35: main (TestGmshMeshReader.cpp:19) +==24591== +==24591== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24591== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24591== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24591== by 0x6590822: ??? +==24591== by 0x659096F: ??? +==24591== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24591== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24591== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24591== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24591== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24591== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24591== by 0x7017D38: PetscInitialize (pinit.c:924) +==24591== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24591== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24591== by 0x1235DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24591== by 0x11EA0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24591== by 0x12152A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24591== by 0x1213CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24591== by 0x121A61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24591== by 0x11CE35: main (TestGmshMeshReader.cpp:19) +==24591== +==24591== Open file descriptor 113: +==24591== +==24591== +==24591== Open file descriptor 110: +==24591== +==24591== +==24591== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGmshMeshReader_valgrind.txt +==24591== +==24591== +==24591== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24591== +==24591== +==24591== +==24591== HEAP SUMMARY: +==24591== in use at exit: 618,222 bytes in 8,238 blocks +==24591== total heap usage: 50,711 allocs, 42,473 frees, 1,339,357,672 bytes allocated +==24591== +==24591== LEAK SUMMARY: +==24591== definitely lost: 0 bytes in 0 blocks +==24591== indirectly lost: 0 bytes in 0 blocks +==24591== possibly lost: 0 bytes in 0 blocks +==24591== still reachable: 24 bytes in 2 blocks +==24591== suppressed: 618,198 bytes in 8,236 blocks +==24591== Reachable blocks (those to which a pointer was found) are not shown. +==24591== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24591== +==24591== For lists of detected and suppressed errors, rerun with: -s +==24591== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestGoldbeter1991OdeSystem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestGoldbeter1991OdeSystem_valgrind.txt new file mode 100644 index 000000000..cfb8bee91 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestGoldbeter1991OdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25836== Memcheck, a memory error detector +==25836== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25836== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25836== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestGoldbeter1991OdeSystem -malloc_debug -malloc_dump -memory_info +==25836== Parent PID: 24036 +==25836== +==25836== +==25836== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25836== Open file descriptor 12: +==25836== at 0xEF9407D: pipe (pipe.c:29) +==25836== by 0x196AC07D: ??? +==25836== by 0x13C514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25836== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25836== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25836== by 0xD871D38: PetscInitialize (pinit.c:924) +==25836== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25836== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25836== by 0x124157: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25836== by 0x11F6A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25836== by 0x121BF4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25836== by 0x121AF0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25836== by 0x122103: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25836== by 0x11DEA5: main (TestGoldbeter1991OdeSystem.cpp:18) +==25836== +==25836== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25836== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25836== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25836== by 0xD71E822: ??? +==25836== by 0xD71E96F: ??? +==25836== by 0x13CF66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25836== by 0x13CF6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25836== by 0x13CAC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25836== by 0x13C512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25836== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25836== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25836== by 0xD871D38: PetscInitialize (pinit.c:924) +==25836== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25836== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25836== by 0x124157: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25836== by 0x11F6A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25836== by 0x121BF4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25836== by 0x121AF0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25836== by 0x122103: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25836== by 0x11DEA5: main (TestGoldbeter1991OdeSystem.cpp:18) +==25836== +==25836== Open file descriptor 113: +==25836== +==25836== +==25836== Open file descriptor 110: +==25836== +==25836== +==25836== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGoldbeter1991OdeSystem_valgrind.txt +==25836== +==25836== +==25836== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25836== +==25836== +==25836== +==25836== HEAP SUMMARY: +==25836== in use at exit: 618,318 bytes in 8,238 blocks +==25836== total heap usage: 63,219 allocs, 54,981 frees, 1,339,961,231 bytes allocated +==25836== +==25836== LEAK SUMMARY: +==25836== definitely lost: 0 bytes in 0 blocks +==25836== indirectly lost: 0 bytes in 0 blocks +==25836== possibly lost: 0 bytes in 0 blocks +==25836== still reachable: 24 bytes in 2 blocks +==25836== suppressed: 618,294 bytes in 8,236 blocks +==25836== Reachable blocks (those to which a pointer was found) are not shown. +==25836== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25836== +==25836== For lists of detected and suppressed errors, rerun with: -s +==25836== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestHdf5Converters_valgrind.txt b/log-files/2024-09-20_21-41-09/TestHdf5Converters_valgrind.txt new file mode 100644 index 000000000..6254634a4 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestHdf5Converters_valgrind.txt @@ -0,0 +1,73 @@ +==25236== Memcheck, a memory error detector +==25236== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25236== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25236== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestHdf5Converters -malloc_debug -malloc_dump -memory_info +==25236== Parent PID: 24036 +==25236== +==25236== +==25236== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25236== Open file descriptor 12: +==25236== at 0x734507D: pipe (pipe.c:29) +==25236== by 0x104D507D: ??? +==25236== by 0xC6094CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25236== by 0x8DB9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25236== by 0x8D52D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25236== by 0x7694D38: PetscInitialize (pinit.c:924) +==25236== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25236== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25236== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25236== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25236== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25236== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25236== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25236== by 0x11B235: main (TestHdf5Converters.cpp:18) +==25236== +==25236== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25236== at 0x7349A1C: __open_nocancel (open64_nocancel.c:39) +==25236== by 0x72CDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25236== by 0x692F822: ??? +==25236== by 0x692F96F: ??? +==25236== by 0xC6AE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25236== by 0xC6AE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25236== by 0xC664922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25236== by 0xC6092DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25236== by 0x8DB9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25236== by 0x8D52D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25236== by 0x7694D38: PetscInitialize (pinit.c:924) +==25236== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25236== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25236== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25236== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25236== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25236== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25236== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25236== by 0x11B235: main (TestHdf5Converters.cpp:18) +==25236== +==25236== Open file descriptor 113: +==25236== +==25236== +==25236== Open file descriptor 110: +==25236== +==25236== +==25236== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5Converters_valgrind.txt +==25236== +==25236== +==25236== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25236== +==25236== +==25236== +==25236== HEAP SUMMARY: +==25236== in use at exit: 618,254 bytes in 8,238 blocks +==25236== total heap usage: 206,014 allocs, 197,776 frees, 1,394,472,305 bytes allocated +==25236== +==25236== LEAK SUMMARY: +==25236== definitely lost: 0 bytes in 0 blocks +==25236== indirectly lost: 0 bytes in 0 blocks +==25236== possibly lost: 0 bytes in 0 blocks +==25236== still reachable: 24 bytes in 2 blocks +==25236== suppressed: 618,230 bytes in 8,236 blocks +==25236== Reachable blocks (those to which a pointer was found) are not shown. +==25236== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25236== +==25236== For lists of detected and suppressed errors, rerun with: -s +==25236== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestHdf5DataReader_valgrind.txt b/log-files/2024-09-20_21-41-09/TestHdf5DataReader_valgrind.txt new file mode 100644 index 000000000..e596f1414 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestHdf5DataReader_valgrind.txt @@ -0,0 +1,73 @@ +==24289== Memcheck, a memory error detector +==24289== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24289== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24289== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info +==24289== Parent PID: 24036 +==24289== +==24289== +==24289== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24289== Open file descriptor 12: +==24289== at 0x645A07D: pipe (pipe.c:29) +==24289== by 0xAF1807D: ??? +==24289== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24289== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24289== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24289== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24289== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24289== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24289== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24289== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24289== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24289== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24289== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24289== by 0x1151B5: main (TestHdf5DataReader.cpp:19) +==24289== +==24289== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24289== at 0x645EA1C: __open_nocancel (open64_nocancel.c:39) +==24289== by 0x63E2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24289== by 0x5D26822: ??? +==24289== by 0x5D2696F: ??? +==24289== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24289== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24289== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24289== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24289== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24289== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24289== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24289== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24289== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24289== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24289== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24289== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24289== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24289== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24289== by 0x1151B5: main (TestHdf5DataReader.cpp:19) +==24289== +==24289== Open file descriptor 113: +==24289== +==24289== +==24289== Open file descriptor 110: +==24289== +==24289== +==24289== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt +==24289== +==24289== +==24289== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24289== +==24289== +==24289== +==24289== HEAP SUMMARY: +==24289== in use at exit: 618,334 bytes in 8,248 blocks +==24289== total heap usage: 58,549 allocs, 50,301 frees, 1,348,775,217 bytes allocated +==24289== +==24289== LEAK SUMMARY: +==24289== definitely lost: 0 bytes in 0 blocks +==24289== indirectly lost: 0 bytes in 0 blocks +==24289== possibly lost: 0 bytes in 0 blocks +==24289== still reachable: 24 bytes in 2 blocks +==24289== suppressed: 618,310 bytes in 8,246 blocks +==24289== Reachable blocks (those to which a pointer was found) are not shown. +==24289== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24289== +==24289== For lists of detected and suppressed errors, rerun with: -s +==24289== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestHdf5DataWriter_valgrind.txt b/log-files/2024-09-20_21-41-09/TestHdf5DataWriter_valgrind.txt new file mode 100644 index 000000000..9eaca676e --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestHdf5DataWriter_valgrind.txt @@ -0,0 +1,74 @@ +==24309== Memcheck, a memory error detector +==24309== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24309== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24309== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info +==24309== Parent PID: 24036 +==24309== +==24309== Warning: invalid file descriptor -1 in syscall close() +==24309== +==24309== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24309== Open file descriptor 12: +==24309== at 0x659107D: pipe (pipe.c:29) +==24309== by 0xAF1807D: ??? +==24309== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24309== by 0x61E0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24309== by 0x6179D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24309== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24309== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24309== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24309== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24309== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24309== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24309== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24309== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24309== by 0x115255: main (TestHdf5DataWriter.cpp:19) +==24309== +==24309== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24309== at 0x6595A1C: __open_nocancel (open64_nocancel.c:39) +==24309== by 0x6519BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24309== by 0x5D26822: ??? +==24309== by 0x5D2696F: ??? +==24309== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24309== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24309== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24309== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24309== by 0x61E0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24309== by 0x6179D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24309== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24309== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24309== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24309== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24309== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24309== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24309== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24309== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24309== by 0x115255: main (TestHdf5DataWriter.cpp:19) +==24309== +==24309== Open file descriptor 113: +==24309== +==24309== +==24309== Open file descriptor 110: +==24309== +==24309== +==24309== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt +==24309== +==24309== +==24309== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24309== +==24309== +==24309== +==24309== HEAP SUMMARY: +==24309== in use at exit: 618,334 bytes in 8,248 blocks +==24309== total heap usage: 114,802 allocs, 106,554 frees, 1,412,665,253 bytes allocated +==24309== +==24309== LEAK SUMMARY: +==24309== definitely lost: 0 bytes in 0 blocks +==24309== indirectly lost: 0 bytes in 0 blocks +==24309== possibly lost: 0 bytes in 0 blocks +==24309== still reachable: 24 bytes in 2 blocks +==24309== suppressed: 618,310 bytes in 8,246 blocks +==24309== Reachable blocks (those to which a pointer was found) are not shown. +==24309== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24309== +==24309== For lists of detected and suppressed errors, rerun with: -s +==24309== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestHdf5ToVisualizerConverters_valgrind.txt b/log-files/2024-09-20_21-41-09/TestHdf5ToVisualizerConverters_valgrind.txt new file mode 100644 index 000000000..1637d1623 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestHdf5ToVisualizerConverters_valgrind.txt @@ -0,0 +1,73 @@ +==43659== Memcheck, a memory error detector +==43659== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43659== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43659== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHdf5ToVisualizerConverters -malloc_debug -malloc_dump -memory_info +==43659== Parent PID: 24036 +==43659== +==43659== +==43659== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43659== Open file descriptor 12: +==43659== at 0xA8AB07D: pipe (pipe.c:29) +==43659== by 0x1432407D: ??? +==43659== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43659== by 0xBFA4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43659== by 0xBF3DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43659== by 0xAC34D38: PetscInitialize (pinit.c:924) +==43659== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43659== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43659== by 0x124324: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43659== by 0x11DB0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43659== by 0x120564: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43659== by 0x120404: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43659== by 0x120A9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43659== by 0x11BF35: main (TestHdf5ToVisualizerConverters.cpp:19) +==43659== +==43659== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43659== at 0xA8AFA1C: __open_nocancel (open64_nocancel.c:39) +==43659== by 0xA833BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43659== by 0xA1CD822: ??? +==43659== by 0xA1CD96F: ??? +==43659== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43659== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43659== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43659== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43659== by 0xBFA4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43659== by 0xBF3DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43659== by 0xAC34D38: PetscInitialize (pinit.c:924) +==43659== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43659== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43659== by 0x124324: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43659== by 0x11DB0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43659== by 0x120564: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43659== by 0x120404: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43659== by 0x120A9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43659== by 0x11BF35: main (TestHdf5ToVisualizerConverters.cpp:19) +==43659== +==43659== Open file descriptor 113: +==43659== +==43659== +==43659== Open file descriptor 110: +==43659== +==43659== +==43659== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5ToVisualizerConverters_valgrind.txt +==43659== +==43659== +==43659== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43659== +==43659== +==43659== +==43659== HEAP SUMMARY: +==43659== in use at exit: 618,334 bytes in 8,238 blocks +==43659== total heap usage: 120,272 allocs, 112,034 frees, 1,366,197,376 bytes allocated +==43659== +==43659== LEAK SUMMARY: +==43659== definitely lost: 0 bytes in 0 blocks +==43659== indirectly lost: 0 bytes in 0 blocks +==43659== possibly lost: 0 bytes in 0 blocks +==43659== still reachable: 24 bytes in 2 blocks +==43659== suppressed: 618,310 bytes in 8,236 blocks +==43659== Reachable blocks (those to which a pointer was found) are not shown. +==43659== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43659== +==43659== For lists of detected and suppressed errors, rerun with: -s +==43659== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestHeartConfig_valgrind.txt b/log-files/2024-09-20_21-41-09/TestHeartConfig_valgrind.txt new file mode 100644 index 000000000..4a0b9d002 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestHeartConfig_valgrind.txt @@ -0,0 +1,73 @@ +==43925== Memcheck, a memory error detector +==43925== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43925== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43925== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartConfig -malloc_debug -malloc_dump -memory_info +==43925== Parent PID: 24036 +==43925== +==43925== +==43925== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43925== Open file descriptor 12: +==43925== at 0xBA9407D: pipe (pipe.c:29) +==43925== by 0x1432407D: ??? +==43925== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43925== by 0xB382418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43925== by 0xB31BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43925== by 0xA012D38: PetscInitialize (pinit.c:924) +==43925== by 0x9E841D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43925== by 0x9E84227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43925== by 0x17E1E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43925== by 0x175CFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43925== by 0x179100: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43925== by 0x178FA0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43925== by 0x179637: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43925== by 0x174125: main (TestHeartConfig.cpp:19) +==43925== +==43925== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43925== at 0xBA98A1C: __open_nocancel (open64_nocancel.c:39) +==43925== by 0xBA1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43925== by 0x9EBF822: ??? +==43925== by 0x9EBF96F: ??? +==43925== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43925== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43925== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43925== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43925== by 0xB382418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43925== by 0xB31BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43925== by 0xA012D38: PetscInitialize (pinit.c:924) +==43925== by 0x9E841D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43925== by 0x9E84227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43925== by 0x17E1E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43925== by 0x175CFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43925== by 0x179100: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43925== by 0x178FA0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43925== by 0x179637: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43925== by 0x174125: main (TestHeartConfig.cpp:19) +==43925== +==43925== Open file descriptor 113: +==43925== +==43925== +==43925== Open file descriptor 110: +==43925== +==43925== +==43925== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartConfig_valgrind.txt +==43925== +==43925== +==43925== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43925== +==43925== +==43925== +==43925== HEAP SUMMARY: +==43925== in use at exit: 618,334 bytes in 8,238 blocks +==43925== total heap usage: 2,320,355 allocs, 2,312,117 frees, 2,008,576,285 bytes allocated +==43925== +==43925== LEAK SUMMARY: +==43925== definitely lost: 0 bytes in 0 blocks +==43925== indirectly lost: 0 bytes in 0 blocks +==43925== possibly lost: 0 bytes in 0 blocks +==43925== still reachable: 24 bytes in 2 blocks +==43925== suppressed: 618,310 bytes in 8,236 blocks +==43925== Reachable blocks (those to which a pointer was found) are not shown. +==43925== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43925== +==43925== For lists of detected and suppressed errors, rerun with: -s +==43925== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestHeartEventHandler_valgrind.txt b/log-files/2024-09-20_21-41-09/TestHeartEventHandler_valgrind.txt new file mode 100644 index 000000000..6e7fcc704 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestHeartEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24158== Memcheck, a memory error detector +==24158== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24158== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24158== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestHeartEventHandler -malloc_debug -malloc_dump -memory_info +==24158== Parent PID: 24036 +==24158== +==24158== +==24158== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24158== Open file descriptor 12: +==24158== at 0x4DEB07D: pipe (pipe.c:29) +==24158== by 0xAEA307D: ??? +==24158== by 0x643A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24158== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24158== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24158== by 0x5036D38: PetscInitialize (pinit.c:924) +==24158== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24158== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24158== by 0x115454: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24158== by 0x11064D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24158== by 0x1134F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24158== by 0x113396: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24158== by 0x113A2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24158== by 0x10EA75: main (TestHeartEventHandler.cpp:19) +==24158== +==24158== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24158== at 0x4DEFA1C: __open_nocancel (open64_nocancel.c:39) +==24158== by 0x4D73BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24158== by 0x4935822: ??? +==24158== by 0x493596F: ??? +==24158== by 0x64E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24158== by 0x64E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24158== by 0x6497922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24158== by 0x643A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24158== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24158== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24158== by 0x5036D38: PetscInitialize (pinit.c:924) +==24158== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24158== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24158== by 0x115454: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24158== by 0x11064D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24158== by 0x1134F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24158== by 0x113396: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24158== by 0x113A2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24158== by 0x10EA75: main (TestHeartEventHandler.cpp:19) +==24158== +==24158== Open file descriptor 113: +==24158== +==24158== +==24158== Open file descriptor 110: +==24158== +==24158== +==24158== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartEventHandler_valgrind.txt +==24158== +==24158== +==24158== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24158== +==24158== +==24158== +==24158== HEAP SUMMARY: +==24158== in use at exit: 617,838 bytes in 8,238 blocks +==24158== total heap usage: 44,953 allocs, 36,715 frees, 1,338,164,164 bytes allocated +==24158== +==24158== LEAK SUMMARY: +==24158== definitely lost: 0 bytes in 0 blocks +==24158== indirectly lost: 0 bytes in 0 blocks +==24158== possibly lost: 0 bytes in 0 blocks +==24158== still reachable: 24 bytes in 2 blocks +==24158== suppressed: 617,814 bytes in 8,236 blocks +==24158== Reachable blocks (those to which a pointer was found) are not shown. +==24158== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24158== +==24158== For lists of detected and suppressed errors, rerun with: -s +==24158== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestHeartFileFinder_valgrind.txt b/log-files/2024-09-20_21-41-09/TestHeartFileFinder_valgrind.txt new file mode 100644 index 000000000..ba54fef97 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestHeartFileFinder_valgrind.txt @@ -0,0 +1,73 @@ +==43951== Memcheck, a memory error detector +==43951== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43951== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43951== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartFileFinder -malloc_debug -malloc_dump -memory_info +==43951== Parent PID: 24036 +==43951== +==43951== +==43951== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43951== Open file descriptor 12: +==43951== at 0x856C07D: pipe (pipe.c:29) +==43951== by 0x1432407D: ??? +==43951== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43951== by 0x9C67418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43951== by 0x9C00D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43951== by 0x88F7D38: PetscInitialize (pinit.c:924) +==43951== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43951== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43951== by 0x11F18E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43951== by 0x11A2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43951== by 0x11C9B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43951== by 0x11C8AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43951== by 0x11CEBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43951== by 0x118AB5: main (TestHeartFileFinder.cpp:18) +==43951== +==43951== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43951== at 0x8570A1C: __open_nocancel (open64_nocancel.c:39) +==43951== by 0x84F4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43951== by 0x81D3822: ??? +==43951== by 0x81D396F: ??? +==43951== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43951== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43951== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43951== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43951== by 0x9C67418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43951== by 0x9C00D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43951== by 0x88F7D38: PetscInitialize (pinit.c:924) +==43951== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43951== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43951== by 0x11F18E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43951== by 0x11A2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43951== by 0x11C9B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43951== by 0x11C8AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43951== by 0x11CEBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43951== by 0x118AB5: main (TestHeartFileFinder.cpp:18) +==43951== +==43951== Open file descriptor 113: +==43951== +==43951== +==43951== Open file descriptor 110: +==43951== +==43951== +==43951== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartFileFinder_valgrind.txt +==43951== +==43951== +==43951== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43951== +==43951== +==43951== +==43951== HEAP SUMMARY: +==43951== in use at exit: 618,334 bytes in 8,238 blocks +==43951== total heap usage: 48,969 allocs, 40,731 frees, 1,338,596,035 bytes allocated +==43951== +==43951== LEAK SUMMARY: +==43951== definitely lost: 0 bytes in 0 blocks +==43951== indirectly lost: 0 bytes in 0 blocks +==43951== possibly lost: 0 bytes in 0 blocks +==43951== still reachable: 24 bytes in 2 blocks +==43951== suppressed: 618,310 bytes in 8,236 blocks +==43951== Reachable blocks (those to which a pointer was found) are not shown. +==43951== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43951== +==43951== For lists of detected and suppressed errors, rerun with: -s +==43951== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestHeartGeometryInformation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestHeartGeometryInformation_valgrind.txt new file mode 100644 index 000000000..f69704202 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestHeartGeometryInformation_valgrind.txt @@ -0,0 +1,73 @@ +==43955== Memcheck, a memory error detector +==43955== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43955== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43955== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartGeometryInformation -malloc_debug -malloc_dump -memory_info +==43955== Parent PID: 24036 +==43955== +==43955== +==43955== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43955== Open file descriptor 12: +==43955== at 0xA50C07D: pipe (pipe.c:29) +==43955== by 0x1432407D: ??? +==43955== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43955== by 0xBC07418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43955== by 0xBBA0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43955== by 0xA897D38: PetscInitialize (pinit.c:924) +==43955== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43955== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43955== by 0x11C60C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43955== by 0x117A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43955== by 0x11A4EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43955== by 0x11A38E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43955== by 0x11AA25: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43955== by 0x115E75: main (TestHeartGeometryInformation.cpp:19) +==43955== +==43955== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43955== at 0xA510A1C: __open_nocancel (open64_nocancel.c:39) +==43955== by 0xA494BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43955== by 0x9E30822: ??? +==43955== by 0x9E3096F: ??? +==43955== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43955== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43955== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43955== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43955== by 0xBC07418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43955== by 0xBBA0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43955== by 0xA897D38: PetscInitialize (pinit.c:924) +==43955== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43955== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43955== by 0x11C60C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43955== by 0x117A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43955== by 0x11A4EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43955== by 0x11A38E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43955== by 0x11AA25: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43955== by 0x115E75: main (TestHeartGeometryInformation.cpp:19) +==43955== +==43955== Open file descriptor 113: +==43955== +==43955== +==43955== Open file descriptor 110: +==43955== +==43955== +==43955== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartGeometryInformation_valgrind.txt +==43955== +==43955== +==43955== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43955== +==43955== +==43955== +==43955== HEAP SUMMARY: +==43955== in use at exit: 618,263 bytes in 8,234 blocks +==43955== total heap usage: 2,705,974 allocs, 2,697,740 frees, 1,653,759,566 bytes allocated +==43955== +==43955== LEAK SUMMARY: +==43955== definitely lost: 0 bytes in 0 blocks +==43955== indirectly lost: 0 bytes in 0 blocks +==43955== possibly lost: 0 bytes in 0 blocks +==43955== still reachable: 24 bytes in 2 blocks +==43955== suppressed: 618,239 bytes in 8,232 blocks +==43955== Reachable blocks (those to which a pointer was found) are not shown. +==43955== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43955== +==43955== For lists of detected and suppressed errors, rerun with: -s +==43955== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-20_21-41-09/TestHeartRegionCodes_valgrind.txt b/log-files/2024-09-20_21-41-09/TestHeartRegionCodes_valgrind.txt new file mode 100644 index 000000000..f3640b0db --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestHeartRegionCodes_valgrind.txt @@ -0,0 +1,36 @@ +==43962== Memcheck, a memory error detector +==43962== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43962== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43962== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartRegionCodes -malloc_debug -malloc_dump -memory_info +==43962== Parent PID: 24036 +==43962== +==43962== +==43962== FILE DESCRIPTORS: 7 open (3 std) at exit. +==43962== Open file descriptor 113: +==43962== +==43962== +==43962== Open file descriptor 110: +==43962== +==43962== +==43962== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartRegionCodes_valgrind.txt +==43962== +==43962== +==43962== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43962== +==43962== +==43962== +==43962== HEAP SUMMARY: +==43962== in use at exit: 24 bytes in 2 blocks +==43962== total heap usage: 7,159 allocs, 7,157 frees, 732,281 bytes allocated +==43962== +==43962== LEAK SUMMARY: +==43962== definitely lost: 0 bytes in 0 blocks +==43962== indirectly lost: 0 bytes in 0 blocks +==43962== possibly lost: 0 bytes in 0 blocks +==43962== still reachable: 24 bytes in 2 blocks +==43962== suppressed: 0 bytes in 0 blocks +==43962== Reachable blocks (those to which a pointer was found) are not shown. +==43962== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43962== +==43962== For lists of detected and suppressed errors, rerun with: -s +==43962== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-20_21-41-09/TestHelloWorld_valgrind.txt b/log-files/2024-09-20_21-41-09/TestHelloWorld_valgrind.txt new file mode 100644 index 000000000..e62042914 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestHelloWorld_valgrind.txt @@ -0,0 +1,73 @@ +==24159== Memcheck, a memory error detector +==24159== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24159== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24159== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestHelloWorld -malloc_debug -malloc_dump -memory_info +==24159== Parent PID: 24036 +==24159== +==24159== +==24159== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24159== Open file descriptor 12: +==24159== at 0x4CB207D: pipe (pipe.c:29) +==24159== by 0xAEA507D: ??? +==24159== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24159== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24159== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24159== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24159== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24159== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24159== by 0x110C3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24159== by 0x10CB53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24159== by 0x10ED04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24159== by 0x10EC00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24159== by 0x10F213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24159== by 0x10B355: main (TestHelloWorld.cpp:18) +==24159== +==24159== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24159== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24159== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24159== by 0x4935822: ??? +==24159== by 0x493596F: ??? +==24159== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24159== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24159== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24159== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24159== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24159== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24159== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24159== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24159== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24159== by 0x110C3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24159== by 0x10CB53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24159== by 0x10ED04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24159== by 0x10EC00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24159== by 0x10F213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24159== by 0x10B355: main (TestHelloWorld.cpp:18) +==24159== +==24159== Open file descriptor 113: +==24159== +==24159== +==24159== Open file descriptor 110: +==24159== +==24159== +==24159== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHelloWorld_valgrind.txt +==24159== +==24159== +==24159== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24159== +==24159== +==24159== +==24159== HEAP SUMMARY: +==24159== in use at exit: 617,838 bytes in 8,238 blocks +==24159== total heap usage: 44,910 allocs, 36,672 frees, 1,338,158,883 bytes allocated +==24159== +==24159== LEAK SUMMARY: +==24159== definitely lost: 0 bytes in 0 blocks +==24159== indirectly lost: 0 bytes in 0 blocks +==24159== possibly lost: 0 bytes in 0 blocks +==24159== still reachable: 24 bytes in 2 blocks +==24159== suppressed: 617,814 bytes in 8,236 blocks +==24159== Reachable blocks (those to which a pointer was found) are not shown. +==24159== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24159== +==24159== For lists of detected and suppressed errors, rerun with: -s +==24159== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestHeterogeneousConductivities_valgrind.txt b/log-files/2024-09-20_21-41-09/TestHeterogeneousConductivities_valgrind.txt new file mode 100644 index 000000000..8b1730562 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestHeterogeneousConductivities_valgrind.txt @@ -0,0 +1,73 @@ +==43969== Memcheck, a memory error detector +==43969== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43969== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43969== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeterogeneousConductivities -malloc_debug -malloc_dump -memory_info +==43969== Parent PID: 24036 +==43969== +==43969== +==43969== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43969== Open file descriptor 12: +==43969== at 0xA7DF07D: pipe (pipe.c:29) +==43969== by 0x1432407D: ??? +==43969== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43969== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43969== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43969== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43969== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43969== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43969== by 0x11BF54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43969== by 0x1174B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43969== by 0x119942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43969== by 0x11983E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43969== by 0x119E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43969== by 0x115CB5: main (TestHeterogeneousConductivities.cpp:18) +==43969== +==43969== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43969== at 0xA7E3A1C: __open_nocancel (open64_nocancel.c:39) +==43969== by 0xA767BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43969== by 0xA101822: ??? +==43969== by 0xA10196F: ??? +==43969== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43969== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43969== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43969== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43969== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43969== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43969== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43969== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43969== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43969== by 0x11BF54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43969== by 0x1174B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43969== by 0x119942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43969== by 0x11983E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43969== by 0x119E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43969== by 0x115CB5: main (TestHeterogeneousConductivities.cpp:18) +==43969== +==43969== Open file descriptor 113: +==43969== +==43969== +==43969== Open file descriptor 110: +==43969== +==43969== +==43969== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeterogeneousConductivities_valgrind.txt +==43969== +==43969== +==43969== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43969== +==43969== +==43969== +==43969== HEAP SUMMARY: +==43969== in use at exit: 618,814 bytes in 8,248 blocks +==43969== total heap usage: 201,472 allocs, 193,224 frees, 1,372,226,015 bytes allocated +==43969== +==43969== LEAK SUMMARY: +==43969== definitely lost: 0 bytes in 0 blocks +==43969== indirectly lost: 0 bytes in 0 blocks +==43969== possibly lost: 0 bytes in 0 blocks +==43969== still reachable: 24 bytes in 2 blocks +==43969== suppressed: 618,790 bytes in 8,246 blocks +==43969== Reachable blocks (those to which a pointer was found) are not shown. +==43969== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43969== +==43969== For lists of detected and suppressed errors, rerun with: -s +==43969== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 38) diff --git a/log-files/2024-09-20_21-41-09/TestHeun2IvpOdeSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestHeun2IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..859c0400d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestHeun2IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24986== Memcheck, a memory error detector +==24986== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24986== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24986== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestHeun2IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24986== Parent PID: 24036 +==24986== +==24986== +==24986== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24986== Open file descriptor 12: +==24986== at 0x503907D: pipe (pipe.c:29) +==24986== by 0xB1E607D: ??? +==24986== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24986== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24986== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24986== by 0x5308D38: PetscInitialize (pinit.c:924) +==24986== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24986== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24986== by 0x127368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24986== by 0x1218FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24986== by 0x1243AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24986== by 0x12424F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24986== by 0x1248E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24986== by 0x11EEC5: main (TestHeun2IvpOdeSolver.cpp:19) +==24986== +==24986== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24986== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24986== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24986== by 0x4B77822: ??? +==24986== by 0x4B7796F: ??? +==24986== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24986== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24986== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24986== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24986== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24986== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24986== by 0x5308D38: PetscInitialize (pinit.c:924) +==24986== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24986== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24986== by 0x127368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24986== by 0x1218FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24986== by 0x1243AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24986== by 0x12424F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24986== by 0x1248E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24986== by 0x11EEC5: main (TestHeun2IvpOdeSolver.cpp:19) +==24986== +==24986== Open file descriptor 113: +==24986== +==24986== +==24986== Open file descriptor 110: +==24986== +==24986== +==24986== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeun2IvpOdeSolver_valgrind.txt +==24986== +==24986== +==24986== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24986== +==24986== +==24986== +==24986== HEAP SUMMARY: +==24986== in use at exit: 617,902 bytes in 8,238 blocks +==24986== total heap usage: 93,030 allocs, 84,792 frees, 1,339,245,628 bytes allocated +==24986== +==24986== LEAK SUMMARY: +==24986== definitely lost: 0 bytes in 0 blocks +==24986== indirectly lost: 0 bytes in 0 blocks +==24986== possibly lost: 0 bytes in 0 blocks +==24986== still reachable: 24 bytes in 2 blocks +==24986== suppressed: 617,878 bytes in 8,236 blocks +==24986== Reachable blocks (those to which a pointer was found) are not shown. +==24986== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24986== +==24986== For lists of detected and suppressed errors, rerun with: -s +==24986== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt new file mode 100644 index 000000000..029defe7e --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==41885== Memcheck, a memory error detector +==41885== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41885== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41885== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem -malloc_debug -malloc_dump -memory_info +==41885== Parent PID: 24036 +==41885== +==41885== +==41885== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41885== Open file descriptor 12: +==41885== at 0x856C07D: pipe (pipe.c:29) +==41885== by 0x1432407D: ??? +==41885== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41885== by 0x9C67418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41885== by 0x9C00D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41885== by 0x88F7D38: PetscInitialize (pinit.c:924) +==41885== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41885== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41885== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41885== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41885== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41885== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41885== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41885== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) +==41885== +==41885== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41885== at 0x8570A1C: __open_nocancel (open64_nocancel.c:39) +==41885== by 0x84F4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41885== by 0x81D3822: ??? +==41885== by 0x81D396F: ??? +==41885== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41885== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41885== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41885== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41885== by 0x9C67418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41885== by 0x9C00D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41885== by 0x88F7D38: PetscInitialize (pinit.c:924) +==41885== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41885== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41885== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41885== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41885== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41885== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41885== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41885== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) +==41885== +==41885== Open file descriptor 113: +==41885== +==41885== +==41885== Open file descriptor 110: +==41885== +==41885== +==41885== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt +==41885== +==41885== +==41885== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41885== +==41885== +==41885== +==41885== HEAP SUMMARY: +==41885== in use at exit: 618,334 bytes in 8,238 blocks +==41885== total heap usage: 49,003 allocs, 40,765 frees, 1,338,534,515 bytes allocated +==41885== +==41885== LEAK SUMMARY: +==41885== definitely lost: 0 bytes in 0 blocks +==41885== indirectly lost: 0 bytes in 0 blocks +==41885== possibly lost: 0 bytes in 0 blocks +==41885== still reachable: 24 bytes in 2 blocks +==41885== suppressed: 618,310 bytes in 8,236 blocks +==41885== Reachable blocks (those to which a pointer was found) are not shown. +==41885== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41885== +==41885== For lists of detected and suppressed errors, rerun with: -s +==41885== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestHoneycombMeshGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..a818bc6d1 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24556== Memcheck, a memory error detector +==24556== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24556== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24556== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24556== Parent PID: 24036 +==24556== +==24556== +==24556== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24556== Open file descriptor 12: +==24556== at 0x81F007D: pipe (pipe.c:29) +==24556== by 0x100C307D: ??? +==24556== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24556== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24556== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24556== by 0x667ED38: PetscInitialize (pinit.c:924) +==24556== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24556== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24556== by 0x11C6C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24556== by 0x11776D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24556== by 0x11A4A8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24556== by 0x11A348: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24556== by 0x11A9DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24556== by 0x115B95: main (TestHoneycombMeshGenerator.cpp:19) +==24556== +==24556== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24556== at 0x81F4A1C: __open_nocancel (open64_nocancel.c:39) +==24556== by 0x8178BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24556== by 0x790E822: ??? +==24556== by 0x790E96F: ??? +==24556== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24556== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24556== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24556== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24556== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24556== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24556== by 0x667ED38: PetscInitialize (pinit.c:924) +==24556== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24556== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24556== by 0x11C6C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24556== by 0x11776D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24556== by 0x11A4A8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24556== by 0x11A348: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24556== by 0x11A9DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24556== by 0x115B95: main (TestHoneycombMeshGenerator.cpp:19) +==24556== +==24556== Open file descriptor 113: +==24556== +==24556== +==24556== Open file descriptor 110: +==24556== +==24556== +==24556== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHoneycombMeshGenerator_valgrind.txt +==24556== +==24556== +==24556== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24556== +==24556== +==24556== +==24556== HEAP SUMMARY: +==24556== in use at exit: 620,774 bytes in 8,239 blocks +==24556== total heap usage: 1,200,537 allocs, 1,192,298 frees, 1,378,997,685 bytes allocated +==24556== +==24556== LEAK SUMMARY: +==24556== definitely lost: 0 bytes in 0 blocks +==24556== indirectly lost: 0 bytes in 0 blocks +==24556== possibly lost: 0 bytes in 0 blocks +==24556== still reachable: 2,576 bytes in 3 blocks +==24556== suppressed: 618,198 bytes in 8,236 blocks +==24556== Reachable blocks (those to which a pointer was found) are not shown. +==24556== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24556== +==24556== For lists of detected and suppressed errors, rerun with: -s +==24556== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..72e63dc92 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24687== Memcheck, a memory error detector +==24687== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24687== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24687== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24687== Parent PID: 24036 +==24687== +==24687== +==24687== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24687== Open file descriptor 12: +==24687== at 0x6C5407D: pipe (pipe.c:29) +==24687== by 0x100C507D: ??? +==24687== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24687== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24687== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24687== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24687== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24687== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24687== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24687== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24687== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24687== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24687== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24687== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) +==24687== +==24687== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24687== at 0x6C58A1C: __open_nocancel (open64_nocancel.c:39) +==24687== by 0x6BDCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24687== by 0x6590822: ??? +==24687== by 0x659096F: ??? +==24687== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24687== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24687== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24687== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24687== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24687== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24687== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24687== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24687== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24687== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24687== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24687== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24687== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24687== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24687== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) +==24687== +==24687== Open file descriptor 113: +==24687== +==24687== +==24687== Open file descriptor 110: +==24687== +==24687== +==24687== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHoneycombVertexMeshGenerator_valgrind.txt +==24687== +==24687== +==24687== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24687== +==24687== +==24687== +==24687== HEAP SUMMARY: +==24687== in use at exit: 618,222 bytes in 8,238 blocks +==24687== total heap usage: 412,636 allocs, 404,398 frees, 1,357,653,608 bytes allocated +==24687== +==24687== LEAK SUMMARY: +==24687== definitely lost: 0 bytes in 0 blocks +==24687== indirectly lost: 0 bytes in 0 blocks +==24687== possibly lost: 0 bytes in 0 blocks +==24687== still reachable: 24 bytes in 2 blocks +==24687== suppressed: 618,198 bytes in 8,236 blocks +==24687== Reachable blocks (those to which a pointer was found) are not shown. +==24687== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24687== +==24687== For lists of detected and suppressed errors, rerun with: -s +==24687== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestImmersedBoundary2dArrays_valgrind.txt b/log-files/2024-09-20_21-41-09/TestImmersedBoundary2dArrays_valgrind.txt new file mode 100644 index 000000000..deb11dcd7 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestImmersedBoundary2dArrays_valgrind.txt @@ -0,0 +1,73 @@ +==24808== Memcheck, a memory error detector +==24808== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24808== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24808== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundary2dArrays -malloc_debug -malloc_dump -memory_info +==24808== Parent PID: 24036 +==24808== +==24808== +==24808== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24808== Open file descriptor 12: +==24808== at 0x81F007D: pipe (pipe.c:29) +==24808== by 0x100C307D: ??? +==24808== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24808== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24808== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24808== by 0x667ED38: PetscInitialize (pinit.c:924) +==24808== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24808== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24808== by 0x12E481: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24808== by 0x129F13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24808== by 0x12C4B2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24808== by 0x12C3AD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24808== by 0x12C9C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24808== by 0x128715: main (TestImmersedBoundary2dArrays.cpp:18) +==24808== +==24808== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24808== at 0x81F4A1C: __open_nocancel (open64_nocancel.c:39) +==24808== by 0x8178BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24808== by 0x790E822: ??? +==24808== by 0x790E96F: ??? +==24808== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24808== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24808== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24808== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24808== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24808== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24808== by 0x667ED38: PetscInitialize (pinit.c:924) +==24808== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24808== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24808== by 0x12E481: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24808== by 0x129F13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24808== by 0x12C4B2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24808== by 0x12C3AD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24808== by 0x12C9C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24808== by 0x128715: main (TestImmersedBoundary2dArrays.cpp:18) +==24808== +==24808== Open file descriptor 113: +==24808== +==24808== +==24808== Open file descriptor 110: +==24808== +==24808== +==24808== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundary2dArrays_valgrind.txt +==24808== +==24808== +==24808== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24808== +==24808== +==24808== +==24808== HEAP SUMMARY: +==24808== in use at exit: 620,774 bytes in 8,239 blocks +==24808== total heap usage: 49,873 allocs, 41,634 frees, 1,345,273,257 bytes allocated +==24808== +==24808== LEAK SUMMARY: +==24808== definitely lost: 0 bytes in 0 blocks +==24808== indirectly lost: 0 bytes in 0 blocks +==24808== possibly lost: 0 bytes in 0 blocks +==24808== still reachable: 2,576 bytes in 3 blocks +==24808== suppressed: 618,198 bytes in 8,236 blocks +==24808== Reachable blocks (those to which a pointer was found) are not shown. +==24808== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24808== +==24808== For lists of detected and suppressed errors, rerun with: -s +==24808== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestImmersedBoundaryCellPopulation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryCellPopulation_valgrind.txt new file mode 100644 index 000000000..5a17d3eb2 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26057== Memcheck, a memory error detector +==26057== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26057== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26057== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundaryCellPopulation -malloc_debug -malloc_dump -memory_info +==26057== Parent PID: 24036 +==26057== +==26057== +==26057== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26057== Open file descriptor 12: +==26057== at 0x10CF207D: pipe (pipe.c:29) +==26057== by 0x196AD07D: ??? +==26057== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26057== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26057== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26057== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26057== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26057== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26057== by 0x17AFD3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26057== by 0x1732C9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26057== by 0x1765FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26057== by 0x17649C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26057== by 0x176B33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26057== by 0x1716E5: main (TestImmersedBoundaryCellPopulation.cpp:19) +==26057== +==26057== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26057== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26057== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26057== by 0xF137822: ??? +==26057== by 0xF13796F: ??? +==26057== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26057== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26057== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26057== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26057== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26057== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26057== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26057== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26057== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26057== by 0x17AFD3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26057== by 0x1732C9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26057== by 0x1765FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26057== by 0x17649C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26057== by 0x176B33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26057== by 0x1716E5: main (TestImmersedBoundaryCellPopulation.cpp:19) +==26057== +==26057== Open file descriptor 113: +==26057== +==26057== +==26057== Open file descriptor 110: +==26057== +==26057== +==26057== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryCellPopulation_valgrind.txt +==26057== +==26057== +==26057== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26057== +==26057== +==26057== +==26057== HEAP SUMMARY: +==26057== in use at exit: 618,350 bytes in 8,239 blocks +==26057== total heap usage: 114,142 allocs, 105,903 frees, 1,385,784,369 bytes allocated +==26057== +==26057== LEAK SUMMARY: +==26057== definitely lost: 0 bytes in 0 blocks +==26057== indirectly lost: 0 bytes in 0 blocks +==26057== possibly lost: 0 bytes in 0 blocks +==26057== still reachable: 56 bytes in 3 blocks +==26057== suppressed: 618,294 bytes in 8,236 blocks +==26057== Reachable blocks (those to which a pointer was found) are not shown. +==26057== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26057== +==26057== For lists of detected and suppressed errors, rerun with: -s +==26057== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestImmersedBoundaryDivisionRules_valgrind.txt b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryDivisionRules_valgrind.txt new file mode 100644 index 000000000..140d43655 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==26058== Memcheck, a memory error detector +==26058== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26058== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26058== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundaryDivisionRules -malloc_debug -malloc_dump -memory_info +==26058== Parent PID: 24036 +==26058== +==26058== +==26058== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26058== Open file descriptor 12: +==26058== at 0x10CF207D: pipe (pipe.c:29) +==26058== by 0x196AD07D: ??? +==26058== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26058== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26058== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26058== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26058== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26058== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26058== by 0x13B60B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26058== by 0x136903: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26058== by 0x138ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26058== by 0x138DD4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26058== by 0x1393E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26058== by 0x135105: main (TestImmersedBoundaryDivisionRules.cpp:18) +==26058== +==26058== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26058== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26058== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26058== by 0xF137822: ??? +==26058== by 0xF13796F: ??? +==26058== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26058== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26058== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26058== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26058== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26058== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26058== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26058== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26058== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26058== by 0x13B60B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26058== by 0x136903: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26058== by 0x138ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26058== by 0x138DD4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26058== by 0x1393E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26058== by 0x135105: main (TestImmersedBoundaryDivisionRules.cpp:18) +==26058== +==26058== Open file descriptor 113: +==26058== +==26058== +==26058== Open file descriptor 110: +==26058== +==26058== +==26058== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryDivisionRules_valgrind.txt +==26058== +==26058== +==26058== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26058== +==26058== +==26058== +==26058== HEAP SUMMARY: +==26058== in use at exit: 618,350 bytes in 8,239 blocks +==26058== total heap usage: 53,311 allocs, 45,072 frees, 1,339,216,810 bytes allocated +==26058== +==26058== LEAK SUMMARY: +==26058== definitely lost: 0 bytes in 0 blocks +==26058== indirectly lost: 0 bytes in 0 blocks +==26058== possibly lost: 0 bytes in 0 blocks +==26058== still reachable: 56 bytes in 3 blocks +==26058== suppressed: 618,294 bytes in 8,236 blocks +==26058== Reachable blocks (those to which a pointer was found) are not shown. +==26058== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26058== +==26058== For lists of detected and suppressed errors, rerun with: -s +==26058== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestImmersedBoundaryElement_valgrind.txt b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryElement_valgrind.txt new file mode 100644 index 000000000..8dd1df84f --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryElement_valgrind.txt @@ -0,0 +1,73 @@ +==24817== Memcheck, a memory error detector +==24817== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24817== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24817== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryElement -malloc_debug -malloc_dump -memory_info +==24817== Parent PID: 24036 +==24817== +==24817== +==24817== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24817== Open file descriptor 12: +==24817== at 0x7DC407D: pipe (pipe.c:29) +==24817== by 0x100C307D: ??? +==24817== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24817== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24817== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24817== by 0x667ED38: PetscInitialize (pinit.c:924) +==24817== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24817== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24817== by 0x119A65: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24817== by 0x11544D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24817== by 0x117AA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24817== by 0x117942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24817== by 0x117FD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24817== by 0x113875: main (TestImmersedBoundaryElement.cpp:19) +==24817== +==24817== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24817== at 0x7DC8A1C: __open_nocancel (open64_nocancel.c:39) +==24817== by 0x7D4CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24817== by 0x790E822: ??? +==24817== by 0x790E96F: ??? +==24817== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24817== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24817== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24817== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24817== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24817== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24817== by 0x667ED38: PetscInitialize (pinit.c:924) +==24817== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24817== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24817== by 0x119A65: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24817== by 0x11544D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24817== by 0x117AA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24817== by 0x117942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24817== by 0x117FD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24817== by 0x113875: main (TestImmersedBoundaryElement.cpp:19) +==24817== +==24817== Open file descriptor 113: +==24817== +==24817== +==24817== Open file descriptor 110: +==24817== +==24817== +==24817== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryElement_valgrind.txt +==24817== +==24817== +==24817== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24817== +==24817== +==24817== +==24817== HEAP SUMMARY: +==24817== in use at exit: 618,222 bytes in 8,238 blocks +==24817== total heap usage: 47,355 allocs, 39,117 frees, 1,338,386,574 bytes allocated +==24817== +==24817== LEAK SUMMARY: +==24817== definitely lost: 0 bytes in 0 blocks +==24817== indirectly lost: 0 bytes in 0 blocks +==24817== possibly lost: 0 bytes in 0 blocks +==24817== still reachable: 24 bytes in 2 blocks +==24817== suppressed: 618,198 bytes in 8,236 blocks +==24817== Reachable blocks (those to which a pointer was found) are not shown. +==24817== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24817== +==24817== For lists of detected and suppressed errors, rerun with: -s +==24817== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestImmersedBoundaryFftInterface_valgrind.txt b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryFftInterface_valgrind.txt new file mode 100644 index 000000000..21f414ac2 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryFftInterface_valgrind.txt @@ -0,0 +1,73 @@ +==24824== Memcheck, a memory error detector +==24824== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24824== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24824== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryFftInterface -malloc_debug -malloc_dump -memory_info +==24824== Parent PID: 24036 +==24824== +==24824== +==24824== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24824== Open file descriptor 12: +==24824== at 0x810907D: pipe (pipe.c:29) +==24824== by 0x100C307D: ??? +==24824== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24824== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24824== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24824== by 0x667ED38: PetscInitialize (pinit.c:924) +==24824== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24824== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24824== by 0x11A441: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24824== by 0x115DD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24824== by 0x1184B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24824== by 0x1183B3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24824== by 0x1189C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24824== by 0x1145D5: main (TestImmersedBoundaryFftInterface.cpp:18) +==24824== +==24824== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24824== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24824== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24824== by 0x790E822: ??? +==24824== by 0x790E96F: ??? +==24824== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24824== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24824== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24824== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24824== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24824== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24824== by 0x667ED38: PetscInitialize (pinit.c:924) +==24824== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24824== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24824== by 0x11A441: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24824== by 0x115DD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24824== by 0x1184B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24824== by 0x1183B3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24824== by 0x1189C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24824== by 0x1145D5: main (TestImmersedBoundaryFftInterface.cpp:18) +==24824== +==24824== Open file descriptor 113: +==24824== +==24824== +==24824== Open file descriptor 110: +==24824== +==24824== +==24824== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryFftInterface_valgrind.txt +==24824== +==24824== +==24824== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24824== +==24824== +==24824== +==24824== HEAP SUMMARY: +==24824== in use at exit: 618,222 bytes in 8,238 blocks +==24824== total heap usage: 48,770 allocs, 40,532 frees, 1,346,895,389 bytes allocated +==24824== +==24824== LEAK SUMMARY: +==24824== definitely lost: 0 bytes in 0 blocks +==24824== indirectly lost: 0 bytes in 0 blocks +==24824== possibly lost: 0 bytes in 0 blocks +==24824== still reachable: 24 bytes in 2 blocks +==24824== suppressed: 618,198 bytes in 8,236 blocks +==24824== Reachable blocks (those to which a pointer was found) are not shown. +==24824== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24824== +==24824== For lists of detected and suppressed errors, rerun with: -s +==24824== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestImmersedBoundaryForces_valgrind.txt b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryForces_valgrind.txt new file mode 100644 index 000000000..b1f92547f --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryForces_valgrind.txt @@ -0,0 +1,73 @@ +==26066== Memcheck, a memory error detector +==26066== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26066== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26066== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundaryForces -malloc_debug -malloc_dump -memory_info +==26066== Parent PID: 24036 +==26066== +==26066== +==26066== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26066== Open file descriptor 12: +==26066== at 0x10D8107D: pipe (pipe.c:29) +==26066== by 0x196AD07D: ??? +==26066== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26066== by 0x10689418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26066== by 0x10622D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26066== by 0xF319D38: PetscInitialize (pinit.c:924) +==26066== by 0xF18B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26066== by 0xF18B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26066== by 0x14A869: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26066== by 0x1430BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26066== by 0x145F70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26066== by 0x145E10: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26066== by 0x1464A7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26066== by 0x1414E5: main (TestImmersedBoundaryForces.cpp:19) +==26066== +==26066== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26066== at 0x10D85A1C: __open_nocancel (open64_nocancel.c:39) +==26066== by 0x10D09BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26066== by 0xF1C6822: ??? +==26066== by 0xF1C696F: ??? +==26066== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26066== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26066== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26066== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26066== by 0x10689418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26066== by 0x10622D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26066== by 0xF319D38: PetscInitialize (pinit.c:924) +==26066== by 0xF18B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26066== by 0xF18B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26066== by 0x14A869: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26066== by 0x1430BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26066== by 0x145F70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26066== by 0x145E10: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26066== by 0x1464A7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26066== by 0x1414E5: main (TestImmersedBoundaryForces.cpp:19) +==26066== +==26066== Open file descriptor 113: +==26066== +==26066== +==26066== Open file descriptor 110: +==26066== +==26066== +==26066== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryForces_valgrind.txt +==26066== +==26066== +==26066== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26066== +==26066== +==26066== +==26066== HEAP SUMMARY: +==26066== in use at exit: 618,350 bytes in 8,239 blocks +==26066== total heap usage: 63,280 allocs, 55,041 frees, 1,343,085,501 bytes allocated +==26066== +==26066== LEAK SUMMARY: +==26066== definitely lost: 0 bytes in 0 blocks +==26066== indirectly lost: 0 bytes in 0 blocks +==26066== possibly lost: 0 bytes in 0 blocks +==26066== still reachable: 56 bytes in 3 blocks +==26066== suppressed: 618,294 bytes in 8,236 blocks +==26066== Reachable blocks (those to which a pointer was found) are not shown. +==26066== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26066== +==26066== For lists of detected and suppressed errors, rerun with: -s +==26066== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..9c000e2c6 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24832== Memcheck, a memory error detector +==24832== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24832== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24832== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24832== Parent PID: 24036 +==24832== +==24832== +==24832== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24832== Open file descriptor 12: +==24832== at 0x810907D: pipe (pipe.c:29) +==24832== by 0x100C307D: ??? +==24832== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24832== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24832== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24832== by 0x667ED38: PetscInitialize (pinit.c:924) +==24832== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24832== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24832== by 0x11345D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24832== by 0x10EDD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24832== by 0x111410: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24832== by 0x11130B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24832== by 0x11191F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24832== by 0x10D5D5: main (TestImmersedBoundaryHoneycombMeshGenerator.cpp:18) +==24832== +==24832== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24832== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24832== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24832== by 0x790E822: ??? +==24832== by 0x790E96F: ??? +==24832== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24832== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24832== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24832== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24832== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24832== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24832== by 0x667ED38: PetscInitialize (pinit.c:924) +==24832== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24832== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24832== by 0x11345D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24832== by 0x10EDD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24832== by 0x111410: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24832== by 0x11130B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24832== by 0x11191F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24832== by 0x10D5D5: main (TestImmersedBoundaryHoneycombMeshGenerator.cpp:18) +==24832== +==24832== Open file descriptor 113: +==24832== +==24832== +==24832== Open file descriptor 110: +==24832== +==24832== +==24832== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt +==24832== +==24832== +==24832== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24832== +==24832== +==24832== +==24832== HEAP SUMMARY: +==24832== in use at exit: 618,222 bytes in 8,238 blocks +==24832== total heap usage: 51,860 allocs, 43,622 frees, 1,340,452,594 bytes allocated +==24832== +==24832== LEAK SUMMARY: +==24832== definitely lost: 0 bytes in 0 blocks +==24832== indirectly lost: 0 bytes in 0 blocks +==24832== possibly lost: 0 bytes in 0 blocks +==24832== still reachable: 24 bytes in 2 blocks +==24832== suppressed: 618,198 bytes in 8,236 blocks +==24832== Reachable blocks (those to which a pointer was found) are not shown. +==24832== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24832== +==24832== For lists of detected and suppressed errors, rerun with: -s +==24832== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestImmersedBoundaryMeshReader_valgrind.txt b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryMeshReader_valgrind.txt new file mode 100644 index 000000000..f8f08c696 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24840== Memcheck, a memory error detector +==24840== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24840== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24840== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMeshReader -malloc_debug -malloc_dump -memory_info +==24840== Parent PID: 24036 +==24840== +==24840== +==24840== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24840== Open file descriptor 12: +==24840== at 0x810907D: pipe (pipe.c:29) +==24840== by 0x100C307D: ??? +==24840== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24840== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24840== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24840== by 0x667ED38: PetscInitialize (pinit.c:924) +==24840== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24840== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24840== by 0x119F95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24840== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24840== by 0x117F84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24840== by 0x117E25: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24840== by 0x1184BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24840== by 0x113AB5: main (TestImmersedBoundaryMeshReader.cpp:19) +==24840== +==24840== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24840== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24840== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24840== by 0x790E822: ??? +==24840== by 0x790E96F: ??? +==24840== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24840== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24840== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24840== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24840== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24840== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24840== by 0x667ED38: PetscInitialize (pinit.c:924) +==24840== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24840== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24840== by 0x119F95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24840== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24840== by 0x117F84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24840== by 0x117E25: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24840== by 0x1184BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24840== by 0x113AB5: main (TestImmersedBoundaryMeshReader.cpp:19) +==24840== +==24840== Open file descriptor 113: +==24840== +==24840== +==24840== Open file descriptor 110: +==24840== +==24840== +==24840== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMeshReader_valgrind.txt +==24840== +==24840== +==24840== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24840== +==24840== +==24840== +==24840== HEAP SUMMARY: +==24840== in use at exit: 618,222 bytes in 8,238 blocks +==24840== total heap usage: 49,718 allocs, 41,480 frees, 1,339,666,183 bytes allocated +==24840== +==24840== LEAK SUMMARY: +==24840== definitely lost: 0 bytes in 0 blocks +==24840== indirectly lost: 0 bytes in 0 blocks +==24840== possibly lost: 0 bytes in 0 blocks +==24840== still reachable: 24 bytes in 2 blocks +==24840== suppressed: 618,198 bytes in 8,236 blocks +==24840== Reachable blocks (those to which a pointer was found) are not shown. +==24840== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24840== +==24840== For lists of detected and suppressed errors, rerun with: -s +==24840== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestImmersedBoundaryMeshWriter_valgrind.txt b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryMeshWriter_valgrind.txt new file mode 100644 index 000000000..5320d22fb --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryMeshWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24854== Memcheck, a memory error detector +==24854== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24854== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24854== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMeshWriter -malloc_debug -malloc_dump -memory_info +==24854== Parent PID: 24036 +==24854== +==24854== +==24854== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24854== Open file descriptor 12: +==24854== at 0x81F007D: pipe (pipe.c:29) +==24854== by 0x100C307D: ??? +==24854== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24854== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24854== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24854== by 0x667ED38: PetscInitialize (pinit.c:924) +==24854== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24854== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24854== by 0x12285F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24854== by 0x11C5F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24854== by 0x11EE24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24854== by 0x11ED1F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24854== by 0x11F333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24854== by 0x11ADF5: main (TestImmersedBoundaryMeshWriter.cpp:18) +==24854== +==24854== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24854== at 0x81F4A1C: __open_nocancel (open64_nocancel.c:39) +==24854== by 0x8178BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24854== by 0x790E822: ??? +==24854== by 0x790E96F: ??? +==24854== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24854== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24854== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24854== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24854== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24854== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24854== by 0x667ED38: PetscInitialize (pinit.c:924) +==24854== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24854== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24854== by 0x12285F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24854== by 0x11C5F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24854== by 0x11EE24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24854== by 0x11ED1F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24854== by 0x11F333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24854== by 0x11ADF5: main (TestImmersedBoundaryMeshWriter.cpp:18) +==24854== +==24854== Open file descriptor 113: +==24854== +==24854== +==24854== Open file descriptor 110: +==24854== +==24854== +==24854== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMeshWriter_valgrind.txt +==24854== +==24854== +==24854== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24854== +==24854== +==24854== +==24854== HEAP SUMMARY: +==24854== in use at exit: 618,222 bytes in 8,238 blocks +==24854== total heap usage: 49,816 allocs, 41,578 frees, 1,339,464,593 bytes allocated +==24854== +==24854== LEAK SUMMARY: +==24854== definitely lost: 0 bytes in 0 blocks +==24854== indirectly lost: 0 bytes in 0 blocks +==24854== possibly lost: 0 bytes in 0 blocks +==24854== still reachable: 24 bytes in 2 blocks +==24854== suppressed: 618,198 bytes in 8,236 blocks +==24854== Reachable blocks (those to which a pointer was found) are not shown. +==24854== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24854== +==24854== For lists of detected and suppressed errors, rerun with: -s +==24854== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestImmersedBoundaryMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryMesh_valgrind.txt new file mode 100644 index 000000000..2efb1e4a8 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24839== Memcheck, a memory error detector +==24839== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24839== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24839== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMesh -malloc_debug -malloc_dump -memory_info +==24839== Parent PID: 24036 +==24839== +==24839== +==24839== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24839== Open file descriptor 12: +==24839== at 0x82C307D: pipe (pipe.c:29) +==24839== by 0x100C507D: ??? +==24839== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24839== by 0x7AE4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24839== by 0x7A7DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24839== by 0x6774D38: PetscInitialize (pinit.c:924) +==24839== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24839== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24839== by 0x161451: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24839== by 0x15BC59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24839== by 0x15EDDE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24839== by 0x15EC7F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24839== by 0x15F315: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24839== by 0x15A075: main (TestImmersedBoundaryMesh.cpp:19) +==24839== +==24839== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24839== at 0x82C7A1C: __open_nocancel (open64_nocancel.c:39) +==24839== by 0x824BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24839== by 0x661F822: ??? +==24839== by 0x661F96F: ??? +==24839== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24839== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24839== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24839== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24839== by 0x7AE4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24839== by 0x7A7DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24839== by 0x6774D38: PetscInitialize (pinit.c:924) +==24839== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24839== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24839== by 0x161451: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24839== by 0x15BC59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24839== by 0x15EDDE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24839== by 0x15EC7F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24839== by 0x15F315: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24839== by 0x15A075: main (TestImmersedBoundaryMesh.cpp:19) +==24839== +==24839== Open file descriptor 113: +==24839== +==24839== +==24839== Open file descriptor 110: +==24839== +==24839== +==24839== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMesh_valgrind.txt +==24839== +==24839== +==24839== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24839== +==24839== +==24839== +==24839== HEAP SUMMARY: +==24839== in use at exit: 620,774 bytes in 8,239 blocks +==24839== total heap usage: 94,788 allocs, 86,549 frees, 1,370,840,363 bytes allocated +==24839== +==24839== LEAK SUMMARY: +==24839== definitely lost: 0 bytes in 0 blocks +==24839== indirectly lost: 0 bytes in 0 blocks +==24839== possibly lost: 0 bytes in 0 blocks +==24839== still reachable: 2,576 bytes in 3 blocks +==24839== suppressed: 618,198 bytes in 8,236 blocks +==24839== Reachable blocks (those to which a pointer was found) are not shown. +==24839== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24839== +==24839== For lists of detected and suppressed errors, rerun with: -s +==24839== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt new file mode 100644 index 000000000..44ea0af5c --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24855== Memcheck, a memory error detector +==24855== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24855== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24855== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryPalisadeMeshGenerator -malloc_debug -malloc_dump -memory_info +==24855== Parent PID: 24036 +==24855== +==24855== +==24855== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24855== Open file descriptor 12: +==24855== at 0x810907D: pipe (pipe.c:29) +==24855== by 0x100C307D: ??? +==24855== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24855== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24855== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24855== by 0x667ED38: PetscInitialize (pinit.c:924) +==24855== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24855== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24855== by 0x114D1D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24855== by 0x1103ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24855== by 0x112D9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24855== by 0x112C3A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24855== by 0x1132D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24855== by 0x10E815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) +==24855== +==24855== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24855== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24855== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24855== by 0x790E822: ??? +==24855== by 0x790E96F: ??? +==24855== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24855== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24855== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24855== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24855== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24855== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24855== by 0x667ED38: PetscInitialize (pinit.c:924) +==24855== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24855== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24855== by 0x114D1D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24855== by 0x1103ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24855== by 0x112D9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24855== by 0x112C3A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24855== by 0x1132D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24855== by 0x10E815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) +==24855== +==24855== Open file descriptor 113: +==24855== +==24855== +==24855== Open file descriptor 110: +==24855== +==24855== +==24855== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt +==24855== +==24855== +==24855== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24855== +==24855== +==24855== +==24855== HEAP SUMMARY: +==24855== in use at exit: 620,774 bytes in 8,239 blocks +==24855== total heap usage: 57,742 allocs, 49,503 frees, 1,359,243,763 bytes allocated +==24855== +==24855== LEAK SUMMARY: +==24855== definitely lost: 0 bytes in 0 blocks +==24855== indirectly lost: 0 bytes in 0 blocks +==24855== possibly lost: 0 bytes in 0 blocks +==24855== still reachable: 2,576 bytes in 3 blocks +==24855== suppressed: 618,198 bytes in 8,236 blocks +==24855== Reachable blocks (those to which a pointer was found) are not shown. +==24855== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24855== +==24855== For lists of detected and suppressed errors, rerun with: -s +==24855== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestImmersedBoundarySimulationModifier_valgrind.txt b/log-files/2024-09-20_21-41-09/TestImmersedBoundarySimulationModifier_valgrind.txt new file mode 100644 index 000000000..af5b31fcc --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestImmersedBoundarySimulationModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26461== Memcheck, a memory error detector +==26461== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26461== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26461== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundarySimulationModifier -malloc_debug -malloc_dump -memory_info +==26461== Parent PID: 24036 +==26461== +==26461== +==26461== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26461== Open file descriptor 12: +==26461== at 0x10CF207D: pipe (pipe.c:29) +==26461== by 0x196AD07D: ??? +==26461== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26461== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26461== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26461== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26461== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26461== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26461== by 0x15313B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26461== by 0x14B9ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26461== by 0x14EA8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26461== by 0x14E92E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26461== by 0x14EFC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26461== by 0x149E15: main (TestImmersedBoundarySimulationModifier.cpp:19) +==26461== +==26461== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26461== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26461== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26461== by 0xF137822: ??? +==26461== by 0xF13796F: ??? +==26461== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26461== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26461== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26461== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26461== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26461== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26461== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26461== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26461== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26461== by 0x15313B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26461== by 0x14B9ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26461== by 0x14EA8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26461== by 0x14E92E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26461== by 0x14EFC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26461== by 0x149E15: main (TestImmersedBoundarySimulationModifier.cpp:19) +==26461== +==26461== Open file descriptor 113: +==26461== +==26461== +==26461== Open file descriptor 110: +==26461== +==26461== +==26461== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundarySimulationModifier_valgrind.txt +==26461== +==26461== +==26461== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26461== +==26461== +==26461== +==26461== HEAP SUMMARY: +==26461== in use at exit: 618,279 bytes in 8,235 blocks +==26461== total heap usage: 3,405,974 allocs, 3,397,739 frees, 1,588,211,774 bytes allocated +==26461== +==26461== LEAK SUMMARY: +==26461== definitely lost: 0 bytes in 0 blocks +==26461== indirectly lost: 0 bytes in 0 blocks +==26461== possibly lost: 0 bytes in 0 blocks +==26461== still reachable: 56 bytes in 3 blocks +==26461== suppressed: 618,223 bytes in 8,232 blocks +==26461== Reachable blocks (those to which a pointer was found) are not shown. +==26461== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26461== +==26461== For lists of detected and suppressed errors, rerun with: -s +==26461== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestImmersedBoundarySvgWriter_valgrind.txt b/log-files/2024-09-20_21-41-09/TestImmersedBoundarySvgWriter_valgrind.txt new file mode 100644 index 000000000..7a752789c --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestImmersedBoundarySvgWriter_valgrind.txt @@ -0,0 +1,73 @@ +==26462== Memcheck, a memory error detector +==26462== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26462== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26462== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundarySvgWriter -malloc_debug -malloc_dump -memory_info +==26462== Parent PID: 24036 +==26462== +==26462== +==26462== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26462== Open file descriptor 12: +==26462== at 0x10CF207D: pipe (pipe.c:29) +==26462== by 0x196AD07D: ??? +==26462== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26462== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26462== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26462== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26462== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26462== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26462== by 0x1430FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26462== by 0x13BF73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26462== by 0x13ECEA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26462== by 0x13EBE5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26462== by 0x13F1F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26462== by 0x13A775: main (TestImmersedBoundarySvgWriter.cpp:18) +==26462== +==26462== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26462== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26462== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26462== by 0xF137822: ??? +==26462== by 0xF13796F: ??? +==26462== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26462== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26462== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26462== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26462== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26462== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26462== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26462== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26462== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26462== by 0x1430FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26462== by 0x13BF73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26462== by 0x13ECEA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26462== by 0x13EBE5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26462== by 0x13F1F9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26462== by 0x13A775: main (TestImmersedBoundarySvgWriter.cpp:18) +==26462== +==26462== Open file descriptor 113: +==26462== +==26462== +==26462== Open file descriptor 110: +==26462== +==26462== +==26462== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundarySvgWriter_valgrind.txt +==26462== +==26462== +==26462== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26462== +==26462== +==26462== +==26462== HEAP SUMMARY: +==26462== in use at exit: 620,870 bytes in 8,239 blocks +==26462== total heap usage: 53,570 allocs, 45,331 frees, 1,339,069,970 bytes allocated +==26462== +==26462== LEAK SUMMARY: +==26462== definitely lost: 0 bytes in 0 blocks +==26462== indirectly lost: 0 bytes in 0 blocks +==26462== possibly lost: 0 bytes in 0 blocks +==26462== still reachable: 2,576 bytes in 3 blocks +==26462== suppressed: 618,294 bytes in 8,236 blocks +==26462== Reachable blocks (those to which a pointer was found) are not shown. +==26462== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26462== +==26462== For lists of detected and suppressed errors, rerun with: -s +==26462== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestImpedancePostProcessor_valgrind.txt b/log-files/2024-09-20_21-41-09/TestImpedancePostProcessor_valgrind.txt new file mode 100644 index 000000000..c9c0949e0 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestImpedancePostProcessor_valgrind.txt @@ -0,0 +1,36 @@ +==41192== Memcheck, a memory error detector +==41192== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41192== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41192== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestImpedancePostProcessor -malloc_debug -malloc_dump -memory_info +==41192== Parent PID: 24036 +==41192== +==41192== +==41192== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41192== Open file descriptor 113: +==41192== +==41192== +==41192== Open file descriptor 110: +==41192== +==41192== +==41192== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImpedancePostProcessor_valgrind.txt +==41192== +==41192== +==41192== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41192== +==41192== +==41192== +==41192== HEAP SUMMARY: +==41192== in use at exit: 24 bytes in 2 blocks +==41192== total heap usage: 5,749 allocs, 5,747 frees, 616,789 bytes allocated +==41192== +==41192== LEAK SUMMARY: +==41192== definitely lost: 0 bytes in 0 blocks +==41192== indirectly lost: 0 bytes in 0 blocks +==41192== possibly lost: 0 bytes in 0 blocks +==41192== still reachable: 24 bytes in 2 blocks +==41192== suppressed: 0 bytes in 0 blocks +==41192== Reachable blocks (those to which a pointer was found) are not shown. +==41192== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41192== +==41192== For lists of detected and suppressed errors, rerun with: -s +==41192== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-20_21-41-09/TestImplicitCardiacMechanicsSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestImplicitCardiacMechanicsSolver_valgrind.txt new file mode 100644 index 000000000..830679b44 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestImplicitCardiacMechanicsSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43425== Memcheck, a memory error detector +==43425== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43425== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43425== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestImplicitCardiacMechanicsSolver -malloc_debug -malloc_dump -memory_info +==43425== Parent PID: 24036 +==43425== +==43425== +==43425== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43425== Open file descriptor 12: +==43425== at 0xBF1F07D: pipe (pipe.c:29) +==43425== by 0x1432607D: ??? +==43425== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43425== by 0xC11C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43425== by 0xC0B5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43425== by 0xA4CAD38: PetscInitialize (pinit.c:924) +==43425== by 0xA3A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43425== by 0xA3A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43425== by 0x12D058: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43425== by 0x127F95: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43425== by 0x12ABEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43425== by 0x12AA8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43425== by 0x12B123: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43425== by 0x126275: main (TestImplicitCardiacMechanicsSolver.cpp:19) +==43425== +==43425== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43425== at 0xBF23A1C: __open_nocancel (open64_nocancel.c:39) +==43425== by 0xBEA7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43425== by 0xB75A822: ??? +==43425== by 0xB75A96F: ??? +==43425== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43425== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43425== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43425== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43425== by 0xC11C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43425== by 0xC0B5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43425== by 0xA4CAD38: PetscInitialize (pinit.c:924) +==43425== by 0xA3A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43425== by 0xA3A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43425== by 0x12D058: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43425== by 0x127F95: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43425== by 0x12ABEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43425== by 0x12AA8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43425== by 0x12B123: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43425== by 0x126275: main (TestImplicitCardiacMechanicsSolver.cpp:19) +==43425== +==43425== Open file descriptor 113: +==43425== +==43425== +==43425== Open file descriptor 110: +==43425== +==43425== +==43425== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImplicitCardiacMechanicsSolver_valgrind.txt +==43425== +==43425== +==43425== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43425== +==43425== +==43425== +==43425== HEAP SUMMARY: +==43425== in use at exit: 618,263 bytes in 8,234 blocks +==43425== total heap usage: 1,348,934 allocs, 1,340,700 frees, 1,479,980,721 bytes allocated +==43425== +==43425== LEAK SUMMARY: +==43425== definitely lost: 0 bytes in 0 blocks +==43425== indirectly lost: 0 bytes in 0 blocks +==43425== possibly lost: 0 bytes in 0 blocks +==43425== still reachable: 24 bytes in 2 blocks +==43425== suppressed: 618,239 bytes in 8,232 blocks +==43425== Reachable blocks (those to which a pointer was found) are not shown. +==43425== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43425== +==43425== For lists of detected and suppressed errors, rerun with: -s +==43425== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-20_21-41-09/TestIncompressibleNonlinearElasticitySolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestIncompressibleNonlinearElasticitySolver_valgrind.txt new file mode 100644 index 000000000..c8992c8f3 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestIncompressibleNonlinearElasticitySolver_valgrind.txt @@ -0,0 +1,73 @@ +==25306== Memcheck, a memory error detector +==25306== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25306== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25306== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestIncompressibleNonlinearElasticitySolver -malloc_debug -malloc_dump -memory_info +==25306== Parent PID: 24036 +==25306== +==25306== +==25306== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25306== Open file descriptor 12: +==25306== at 0x840107D: pipe (pipe.c:29) +==25306== by 0x106D707D: ??? +==25306== by 0xBF1F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25306== by 0x7C22418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25306== by 0x7BBBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25306== by 0x688FD38: PetscInitialize (pinit.c:924) +==25306== by 0x67661D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25306== by 0x6766227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25306== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25306== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25306== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25306== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25306== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25306== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) +==25306== +==25306== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25306== at 0x8405A1C: __open_nocancel (open64_nocancel.c:39) +==25306== by 0x8389BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25306== by 0x7B1F822: ??? +==25306== by 0x7B1F96F: ??? +==25306== by 0xBFC46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25306== by 0xBFC4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25306== by 0xBF7A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25306== by 0xBF1F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25306== by 0x7C22418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25306== by 0x7BBBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25306== by 0x688FD38: PetscInitialize (pinit.c:924) +==25306== by 0x67661D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25306== by 0x6766227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25306== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25306== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25306== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25306== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25306== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25306== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) +==25306== +==25306== Open file descriptor 113: +==25306== +==25306== +==25306== Open file descriptor 110: +==25306== +==25306== +==25306== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIncompressibleNonlinearElasticitySolver_valgrind.txt +==25306== +==25306== +==25306== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25306== +==25306== +==25306== +==25306== HEAP SUMMARY: +==25306== in use at exit: 618,199 bytes in 8,234 blocks +==25306== total heap usage: 638,259 allocs, 630,025 frees, 1,498,243,373 bytes allocated +==25306== +==25306== LEAK SUMMARY: +==25306== definitely lost: 0 bytes in 0 blocks +==25306== indirectly lost: 0 bytes in 0 blocks +==25306== possibly lost: 0 bytes in 0 blocks +==25306== still reachable: 24 bytes in 2 blocks +==25306== suppressed: 618,175 bytes in 8,232 blocks +==25306== Reachable blocks (those to which a pointer was found) are not shown. +==25306== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25306== +==25306== For lists of detected and suppressed errors, rerun with: -s +==25306== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-20_21-41-09/TestIonicModelsWithSacs_valgrind.txt b/log-files/2024-09-20_21-41-09/TestIonicModelsWithSacs_valgrind.txt new file mode 100644 index 000000000..654d2dbf7 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestIonicModelsWithSacs_valgrind.txt @@ -0,0 +1,73 @@ +==42662== Memcheck, a memory error detector +==42662== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42662== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42662== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestIonicModelsWithSacs -malloc_debug -malloc_dump -memory_info +==42662== Parent PID: 24036 +==42662== +==42662== +==42662== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42662== Open file descriptor 12: +==42662== at 0x9C6507D: pipe (pipe.c:29) +==42662== by 0x1432407D: ??? +==42662== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42662== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42662== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42662== by 0x8505D38: PetscInitialize (pinit.c:924) +==42662== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42662== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42662== by 0x11A0FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42662== by 0x1145B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42662== by 0x116CB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42662== by 0x116BAD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42662== by 0x1171C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42662== by 0x112DB5: main (TestIonicModelsWithSacs.cpp:18) +==42662== +==42662== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42662== at 0x9C69A1C: __open_nocancel (open64_nocancel.c:39) +==42662== by 0x9BEDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42662== by 0x9795822: ??? +==42662== by 0x979596F: ??? +==42662== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42662== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42662== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42662== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42662== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42662== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42662== by 0x8505D38: PetscInitialize (pinit.c:924) +==42662== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42662== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42662== by 0x11A0FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42662== by 0x1145B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42662== by 0x116CB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42662== by 0x116BAD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42662== by 0x1171C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42662== by 0x112DB5: main (TestIonicModelsWithSacs.cpp:18) +==42662== +==42662== Open file descriptor 113: +==42662== +==42662== +==42662== Open file descriptor 110: +==42662== +==42662== +==42662== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIonicModelsWithSacs_valgrind.txt +==42662== +==42662== +==42662== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42662== +==42662== +==42662== +==42662== HEAP SUMMARY: +==42662== in use at exit: 618,334 bytes in 8,238 blocks +==42662== total heap usage: 481,200 allocs, 472,962 frees, 1,442,367,243 bytes allocated +==42662== +==42662== LEAK SUMMARY: +==42662== definitely lost: 0 bytes in 0 blocks +==42662== indirectly lost: 0 bytes in 0 blocks +==42662== possibly lost: 0 bytes in 0 blocks +==42662== still reachable: 24 bytes in 2 blocks +==42662== suppressed: 618,310 bytes in 8,236 blocks +==42662== Reachable blocks (those to which a pointer was found) are not shown. +==42662== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42662== +==42662== For lists of detected and suppressed errors, rerun with: -s +==42662== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestIonicModels_valgrind.txt b/log-files/2024-09-20_21-41-09/TestIonicModels_valgrind.txt new file mode 100644 index 000000000..c8b871f92 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestIonicModels_valgrind.txt @@ -0,0 +1,73 @@ +==42150== Memcheck, a memory error detector +==42150== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42150== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42150== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestIonicModels -malloc_debug -malloc_dump -memory_info +==42150== Parent PID: 24036 +==42150== +==42150== +==42150== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42150== Open file descriptor 12: +==42150== at 0x9D1A07D: pipe (pipe.c:29) +==42150== by 0x1432407D: ??? +==42150== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42150== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42150== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42150== by 0x85DDD38: PetscInitialize (pinit.c:924) +==42150== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42150== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42150== by 0x1365FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42150== by 0x130B0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42150== by 0x133AAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42150== by 0x13394E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42150== by 0x133FE5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42150== by 0x12BDA5: main (TestIonicModels.cpp:19) +==42150== +==42150== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42150== at 0x9D1EA1C: __open_nocancel (open64_nocancel.c:39) +==42150== by 0x9CA2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42150== by 0x848A822: ??? +==42150== by 0x848A96F: ??? +==42150== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42150== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42150== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42150== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42150== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42150== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42150== by 0x85DDD38: PetscInitialize (pinit.c:924) +==42150== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42150== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42150== by 0x1365FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42150== by 0x130B0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42150== by 0x133AAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42150== by 0x13394E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42150== by 0x133FE5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42150== by 0x12BDA5: main (TestIonicModels.cpp:19) +==42150== +==42150== Open file descriptor 113: +==42150== +==42150== +==42150== Open file descriptor 110: +==42150== +==42150== +==42150== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIonicModels_valgrind.txt +==42150== +==42150== +==42150== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42150== +==42150== +==42150== +==42150== HEAP SUMMARY: +==42150== in use at exit: 620,043 bytes in 8,238 blocks +==42150== total heap usage: 1,892,202 allocs, 1,883,964 frees, 3,069,792,863 bytes allocated +==42150== +==42150== LEAK SUMMARY: +==42150== definitely lost: 0 bytes in 0 blocks +==42150== indirectly lost: 0 bytes in 0 blocks +==42150== possibly lost: 0 bytes in 0 blocks +==42150== still reachable: 1,804 bytes in 6 blocks +==42150== suppressed: 618,239 bytes in 8,232 blocks +==42150== Reachable blocks (those to which a pointer was found) are not shown. +==42150== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42150== +==42150== For lists of detected and suppressed errors, rerun with: -s +==42150== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestLinearBasisFunction_valgrind.txt b/log-files/2024-09-20_21-41-09/TestLinearBasisFunction_valgrind.txt new file mode 100644 index 000000000..b1507358d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestLinearBasisFunction_valgrind.txt @@ -0,0 +1,73 @@ +==25243== Memcheck, a memory error detector +==25243== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25243== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25243== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearBasisFunction -malloc_debug -malloc_dump -memory_info +==25243== Parent PID: 24036 +==25243== +==25243== +==25243== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25243== Open file descriptor 12: +==25243== at 0x6CAC07D: pipe (pipe.c:29) +==25243== by 0x104D507D: ??? +==25243== by 0xC31D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25243== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25243== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25243== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25243== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25243== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25243== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25243== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25243== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25243== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25243== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25243== by 0x11B875: main (TestLinearBasisFunction.cpp:18) +==25243== +==25243== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25243== at 0x6CB0A1C: __open_nocancel (open64_nocancel.c:39) +==25243== by 0x6C34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25243== by 0x692F822: ??? +==25243== by 0x692F96F: ??? +==25243== by 0xC3C26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25243== by 0xC3C2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25243== by 0xC378922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25243== by 0xC31D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25243== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25243== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25243== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25243== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25243== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25243== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25243== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25243== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25243== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25243== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25243== by 0x11B875: main (TestLinearBasisFunction.cpp:18) +==25243== +==25243== Open file descriptor 113: +==25243== +==25243== +==25243== Open file descriptor 110: +==25243== +==25243== +==25243== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearBasisFunction_valgrind.txt +==25243== +==25243== +==25243== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25243== +==25243== +==25243== +==25243== HEAP SUMMARY: +==25243== in use at exit: 618,254 bytes in 8,238 blocks +==25243== total heap usage: 47,358 allocs, 39,120 frees, 1,338,386,856 bytes allocated +==25243== +==25243== LEAK SUMMARY: +==25243== definitely lost: 0 bytes in 0 blocks +==25243== indirectly lost: 0 bytes in 0 blocks +==25243== possibly lost: 0 bytes in 0 blocks +==25243== still reachable: 24 bytes in 2 blocks +==25243== suppressed: 618,230 bytes in 8,236 blocks +==25243== Reachable blocks (those to which a pointer was found) are not shown. +==25243== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25243== +==25243== For lists of detected and suppressed errors, rerun with: -s +==25243== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt new file mode 100644 index 000000000..65997eb8a --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25010== Memcheck, a memory error detector +==25010== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25010== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25010== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearParabolicPdeSystemForCoupledOdeSystem -malloc_debug -malloc_dump -memory_info +==25010== Parent PID: 24036 +==25010== +==25010== +==25010== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25010== Open file descriptor 12: +==25010== at 0x7DC407D: pipe (pipe.c:29) +==25010== by 0x100C307D: ??? +==25010== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25010== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25010== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25010== by 0x6680D38: PetscInitialize (pinit.c:924) +==25010== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25010== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25010== by 0x1173E3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25010== by 0x112E53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25010== by 0x11519C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25010== by 0x115097: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25010== by 0x1156AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25010== by 0x111655: main (TestLinearParabolicPdeSystemForCoupledOdeSystem.cpp:18) +==25010== +==25010== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25010== at 0x7DC8A1C: __open_nocancel (open64_nocancel.c:39) +==25010== by 0x7D4CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25010== by 0x7910822: ??? +==25010== by 0x791096F: ??? +==25010== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25010== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25010== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25010== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25010== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25010== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25010== by 0x6680D38: PetscInitialize (pinit.c:924) +==25010== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25010== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25010== by 0x1173E3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25010== by 0x112E53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25010== by 0x11519C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25010== by 0x115097: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25010== by 0x1156AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25010== by 0x111655: main (TestLinearParabolicPdeSystemForCoupledOdeSystem.cpp:18) +==25010== +==25010== Open file descriptor 113: +==25010== +==25010== +==25010== Open file descriptor 110: +==25010== +==25010== +==25010== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt +==25010== +==25010== +==25010== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25010== +==25010== +==25010== +==25010== HEAP SUMMARY: +==25010== in use at exit: 618,222 bytes in 8,238 blocks +==25010== total heap usage: 47,307 allocs, 39,069 frees, 1,338,381,414 bytes allocated +==25010== +==25010== LEAK SUMMARY: +==25010== definitely lost: 0 bytes in 0 blocks +==25010== indirectly lost: 0 bytes in 0 blocks +==25010== possibly lost: 0 bytes in 0 blocks +==25010== still reachable: 24 bytes in 2 blocks +==25010== suppressed: 618,198 bytes in 8,236 blocks +==25010== Reachable blocks (those to which a pointer was found) are not shown. +==25010== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25010== +==25010== For lists of detected and suppressed errors, rerun with: -s +==25010== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt new file mode 100644 index 000000000..87aac0eee --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25033== Memcheck, a memory error detector +==25033== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25033== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25033== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver -malloc_debug -malloc_dump -memory_info +==25033== Parent PID: 24036 +==25033== +==25033== +==25033== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25033== Open file descriptor 12: +==25033== at 0x87B607D: pipe (pipe.c:29) +==25033== by 0x1080507D: ??? +==25033== by 0xC6194CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25033== by 0x8DAA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25033== by 0x8D43D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25033== by 0x6D61D38: PetscInitialize (pinit.c:924) +==25033== by 0x6C381D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25033== by 0x6C38227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25033== by 0x199CB4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25033== by 0x191511: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25033== by 0x1949B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25033== by 0x194858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25033== by 0x194EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25033== by 0x18F635: main (TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver.cpp:19) +==25033== +==25033== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25033== at 0x87BAA1C: __open_nocancel (open64_nocancel.c:39) +==25033== by 0x873EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25033== by 0x7FF1822: ??? +==25033== by 0x7FF196F: ??? +==25033== by 0xC6BE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25033== by 0xC6BE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25033== by 0xC674922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25033== by 0xC6192DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25033== by 0x8DAA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25033== by 0x8D43D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25033== by 0x6D61D38: PetscInitialize (pinit.c:924) +==25033== by 0x6C381D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25033== by 0x6C38227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25033== by 0x199CB4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25033== by 0x191511: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25033== by 0x1949B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25033== by 0x194858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25033== by 0x194EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25033== by 0x18F635: main (TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver.cpp:19) +==25033== +==25033== Open file descriptor 113: +==25033== +==25033== +==25033== Open file descriptor 110: +==25033== +==25033== +==25033== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt +==25033== +==25033== +==25033== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25033== +==25033== +==25033== +==25033== HEAP SUMMARY: +==25033== in use at exit: 620,783 bytes in 8,235 blocks +==25033== total heap usage: 2,554,387 allocs, 2,546,152 frees, 1,577,429,119 bytes allocated +==25033== +==25033== LEAK SUMMARY: +==25033== definitely lost: 0 bytes in 0 blocks +==25033== indirectly lost: 0 bytes in 0 blocks +==25033== possibly lost: 0 bytes in 0 blocks +==25033== still reachable: 2,576 bytes in 3 blocks +==25033== suppressed: 618,207 bytes in 8,232 blocks +==25033== Reachable blocks (those to which a pointer was found) are not shown. +==25033== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25033== +==25033== For lists of detected and suppressed errors, rerun with: -s +==25033== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-20_21-41-09/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt b/log-files/2024-09-20_21-41-09/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt new file mode 100644 index 000000000..d18891c3a --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt @@ -0,0 +1,73 @@ +==40486== Memcheck, a memory error detector +==40486== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40486== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40486== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestLinearSpringWithVariableSpringConstantsForce -malloc_debug -malloc_dump -memory_info +==40486== Parent PID: 24036 +==40486== +==40486== +==40486== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40486== Open file descriptor 12: +==40486== at 0x111E407D: pipe (pipe.c:29) +==40486== by 0x1B36F07D: ??? +==40486== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40486== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40486== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40486== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40486== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40486== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40486== by 0x165A7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40486== by 0x15DE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40486== by 0x160FB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40486== by 0x160E58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40486== by 0x1614EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40486== by 0x15C295: main (TestLinearSpringWithVariableSpringConstantsForce.cpp:19) +==40486== +==40486== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40486== at 0x111E8A1C: __open_nocancel (open64_nocancel.c:39) +==40486== by 0x1116CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40486== by 0x109F7822: ??? +==40486== by 0x109F796F: ??? +==40486== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40486== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40486== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40486== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40486== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40486== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40486== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40486== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40486== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40486== by 0x165A7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40486== by 0x15DE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40486== by 0x160FB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40486== by 0x160E58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40486== by 0x1614EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40486== by 0x15C295: main (TestLinearSpringWithVariableSpringConstantsForce.cpp:19) +==40486== +==40486== Open file descriptor 113: +==40486== +==40486== +==40486== Open file descriptor 110: +==40486== +==40486== +==40486== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt +==40486== +==40486== +==40486== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40486== +==40486== +==40486== +==40486== HEAP SUMMARY: +==40486== in use at exit: 618,366 bytes in 8,239 blocks +==40486== total heap usage: 555,642 allocs, 547,403 frees, 1,383,864,713 bytes allocated +==40486== +==40486== LEAK SUMMARY: +==40486== definitely lost: 0 bytes in 0 blocks +==40486== indirectly lost: 0 bytes in 0 blocks +==40486== possibly lost: 0 bytes in 0 blocks +==40486== still reachable: 56 bytes in 3 blocks +==40486== suppressed: 618,310 bytes in 8,236 blocks +==40486== Reachable blocks (those to which a pointer was found) are not shown. +==40486== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40486== +==40486== For lists of detected and suppressed errors, rerun with: -s +==40486== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestLinearSystem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestLinearSystem_valgrind.txt new file mode 100644 index 000000000..a4219d193 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestLinearSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24344== Memcheck, a memory error detector +==24344== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24344== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24344== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestLinearSystem -malloc_debug -malloc_dump -memory_info +==24344== Parent PID: 24036 +==24344== +==24344== +==24344== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24344== Open file descriptor 12: +==24344== at 0x610307D: pipe (pipe.c:29) +==24344== by 0xAF3907D: ??? +==24344== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24344== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24344== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24344== by 0x4B19D38: PetscInitialize (pinit.c:924) +==24344== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24344== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24344== by 0x135370: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24344== by 0x12FAC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24344== by 0x132BF0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24344== by 0x132A90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24344== by 0x133127: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24344== by 0x12DEE5: main (TestLinearSystem.cpp:19) +==24344== +==24344== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24344== at 0x6107A1C: __open_nocancel (open64_nocancel.c:39) +==24344== by 0x608BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24344== by 0x49C4822: ??? +==24344== by 0x49C496F: ??? +==24344== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24344== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24344== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24344== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24344== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24344== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24344== by 0x4B19D38: PetscInitialize (pinit.c:924) +==24344== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24344== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24344== by 0x135370: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24344== by 0x12FAC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24344== by 0x132BF0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24344== by 0x132A90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24344== by 0x133127: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24344== by 0x12DEE5: main (TestLinearSystem.cpp:19) +==24344== +==24344== Open file descriptor 113: +==24344== +==24344== +==24344== Open file descriptor 110: +==24344== +==24344== +==24344== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearSystem_valgrind.txt +==24344== +==24344== +==24344== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24344== +==24344== +==24344== +==24344== HEAP SUMMARY: +==24344== in use at exit: 617,870 bytes in 8,239 blocks +==24344== total heap usage: 59,954 allocs, 51,715 frees, 1,374,857,007 bytes allocated +==24344== +==24344== LEAK SUMMARY: +==24344== definitely lost: 0 bytes in 0 blocks +==24344== indirectly lost: 0 bytes in 0 blocks +==24344== possibly lost: 0 bytes in 0 blocks +==24344== still reachable: 40 bytes in 3 blocks +==24344== suppressed: 617,830 bytes in 8,236 blocks +==24344== Reachable blocks (those to which a pointer was found) are not shown. +==24344== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24344== +==24344== For lists of detected and suppressed errors, rerun with: -s +==24344== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestLobePropertiesCalculator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestLobePropertiesCalculator_valgrind.txt new file mode 100644 index 000000000..52e139bd4 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestLobePropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==41239== Memcheck, a memory error detector +==41239== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41239== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41239== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestLobePropertiesCalculator -malloc_debug -malloc_dump -memory_info +==41239== Parent PID: 24036 +==41239== +==41239== +==41239== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41239== Open file descriptor 113: +==41239== +==41239== +==41239== Open file descriptor 110: +==41239== +==41239== +==41239== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLobePropertiesCalculator_valgrind.txt +==41239== +==41239== +==41239== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41239== +==41239== +==41239== +==41239== HEAP SUMMARY: +==41239== in use at exit: 24 bytes in 2 blocks +==41239== total heap usage: 134,423 allocs, 134,421 frees, 48,976,300 bytes allocated +==41239== +==41239== LEAK SUMMARY: +==41239== definitely lost: 0 bytes in 0 blocks +==41239== indirectly lost: 0 bytes in 0 blocks +==41239== possibly lost: 0 bytes in 0 blocks +==41239== still reachable: 24 bytes in 2 blocks +==41239== suppressed: 0 bytes in 0 blocks +==41239== Reachable blocks (those to which a pointer was found) are not shown. +==41239== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41239== +==41239== For lists of detected and suppressed errors, rerun with: -s +==41239== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-20_21-41-09/TestLogFile_valgrind.txt b/log-files/2024-09-20_21-41-09/TestLogFile_valgrind.txt new file mode 100644 index 000000000..49501dd39 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestLogFile_valgrind.txt @@ -0,0 +1,73 @@ +==24160== Memcheck, a memory error detector +==24160== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24160== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24160== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestLogFile -malloc_debug -malloc_dump -memory_info +==24160== Parent PID: 24036 +==24160== +==24160== +==24160== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24160== Open file descriptor 12: +==24160== at 0x616907D: pipe (pipe.c:29) +==24160== by 0xAEA507D: ??? +==24160== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24160== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24160== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24160== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24160== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24160== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24160== by 0x11A18F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24160== by 0x11398D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24160== by 0x116442: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24160== by 0x1162E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24160== by 0x116979: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24160== by 0x111DB5: main (TestLogFile.cpp:19) +==24160== +==24160== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24160== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24160== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24160== by 0x5CB3822: ??? +==24160== by 0x5CB396F: ??? +==24160== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24160== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24160== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24160== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24160== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24160== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24160== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24160== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24160== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24160== by 0x11A18F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24160== by 0x11398D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24160== by 0x116442: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24160== by 0x1162E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24160== by 0x116979: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24160== by 0x111DB5: main (TestLogFile.cpp:19) +==24160== +==24160== Open file descriptor 113: +==24160== +==24160== +==24160== Open file descriptor 110: +==24160== +==24160== +==24160== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLogFile_valgrind.txt +==24160== +==24160== +==24160== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24160== +==24160== +==24160== +==24160== HEAP SUMMARY: +==24160== in use at exit: 617,838 bytes in 8,238 blocks +==24160== total heap usage: 45,248 allocs, 37,010 frees, 1,338,411,258 bytes allocated +==24160== +==24160== LEAK SUMMARY: +==24160== definitely lost: 0 bytes in 0 blocks +==24160== indirectly lost: 0 bytes in 0 blocks +==24160== possibly lost: 0 bytes in 0 blocks +==24160== still reachable: 24 bytes in 2 blocks +==24160== suppressed: 617,814 bytes in 8,236 blocks +==24160== Reachable blocks (those to which a pointer was found) are not shown. +==24160== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24160== +==24160== For lists of detected and suppressed errors, rerun with: -s +==24160== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestMajorAirwaysCentreLinesCleaner_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMajorAirwaysCentreLinesCleaner_valgrind.txt new file mode 100644 index 000000000..0d31c730f --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMajorAirwaysCentreLinesCleaner_valgrind.txt @@ -0,0 +1,73 @@ +==41263== Memcheck, a memory error detector +==41263== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41263== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41263== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMajorAirwaysCentreLinesCleaner -malloc_debug -malloc_dump -memory_info +==41263== Parent PID: 24036 +==41263== +==41263== +==41263== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41263== Open file descriptor 12: +==41263== at 0x822907D: pipe (pipe.c:29) +==41263== by 0x107A407D: ??? +==41263== by 0xBFCD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41263== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41263== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41263== by 0x679ED38: PetscInitialize (pinit.c:924) +==41263== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41263== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41263== by 0x11675D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41263== by 0x1121F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41263== by 0x1146F0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41263== by 0x1145EB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41263== by 0x114BFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41263== by 0x1109F5: main (TestMajorAirwaysCentreLinesCleaner.cpp:18) +==41263== +==41263== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41263== at 0x822DA1C: __open_nocancel (open64_nocancel.c:39) +==41263== by 0x81B1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41263== by 0x7A2E822: ??? +==41263== by 0x7A2E96F: ??? +==41263== by 0xC0726DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41263== by 0xC072938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41263== by 0xC028922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41263== by 0xBFCD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41263== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41263== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41263== by 0x679ED38: PetscInitialize (pinit.c:924) +==41263== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41263== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41263== by 0x11675D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41263== by 0x1121F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41263== by 0x1146F0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41263== by 0x1145EB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41263== by 0x114BFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41263== by 0x1109F5: main (TestMajorAirwaysCentreLinesCleaner.cpp:18) +==41263== +==41263== Open file descriptor 113: +==41263== +==41263== +==41263== Open file descriptor 110: +==41263== +==41263== +==41263== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMajorAirwaysCentreLinesCleaner_valgrind.txt +==41263== +==41263== +==41263== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41263== +==41263== +==41263== +==41263== HEAP SUMMARY: +==41263== in use at exit: 618,318 bytes in 8,238 blocks +==41263== total heap usage: 493,347 allocs, 485,109 frees, 1,357,249,449 bytes allocated +==41263== +==41263== LEAK SUMMARY: +==41263== definitely lost: 0 bytes in 0 blocks +==41263== indirectly lost: 0 bytes in 0 blocks +==41263== possibly lost: 0 bytes in 0 blocks +==41263== still reachable: 24 bytes in 2 blocks +==41263== suppressed: 618,294 bytes in 8,236 blocks +==41263== Reachable blocks (those to which a pointer was found) are not shown. +==41263== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41263== +==41263== For lists of detected and suppressed errors, rerun with: -s +==41263== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestMaterialLaws_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMaterialLaws_valgrind.txt new file mode 100644 index 000000000..11d139b32 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMaterialLaws_valgrind.txt @@ -0,0 +1,73 @@ +==25307== Memcheck, a memory error detector +==25307== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25307== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25307== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMaterialLaws -malloc_debug -malloc_dump -memory_info +==25307== Parent PID: 24036 +==25307== +==25307== +==25307== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25307== Open file descriptor 12: +==25307== at 0x4F1B07D: pipe (pipe.c:29) +==25307== by 0x106D807D: ??? +==25307== by 0xBFDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25307== by 0x88A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25307== by 0x883FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25307== by 0x71ADD38: PetscInitialize (pinit.c:924) +==25307== by 0x4A7A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25307== by 0x4A7A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25307== by 0x12ADEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25307== by 0x125E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25307== by 0x128AB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25307== by 0x128952: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25307== by 0x128FE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25307== by 0x124255: main (TestMaterialLaws.cpp:19) +==25307== +==25307== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25307== at 0x4F1FA1C: __open_nocancel (open64_nocancel.c:39) +==25307== by 0x4EA3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25307== by 0x4AB5822: ??? +==25307== by 0x4AB596F: ??? +==25307== by 0xC0856DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25307== by 0xC085938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25307== by 0xC03B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25307== by 0xBFDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25307== by 0x88A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25307== by 0x883FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25307== by 0x71ADD38: PetscInitialize (pinit.c:924) +==25307== by 0x4A7A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25307== by 0x4A7A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25307== by 0x12ADEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25307== by 0x125E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25307== by 0x128AB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25307== by 0x128952: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25307== by 0x128FE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25307== by 0x124255: main (TestMaterialLaws.cpp:19) +==25307== +==25307== Open file descriptor 113: +==25307== +==25307== +==25307== Open file descriptor 110: +==25307== +==25307== +==25307== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMaterialLaws_valgrind.txt +==25307== +==25307== +==25307== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25307== +==25307== +==25307== +==25307== HEAP SUMMARY: +==25307== in use at exit: 618,270 bytes in 8,238 blocks +==25307== total heap usage: 47,752 allocs, 39,514 frees, 1,338,428,836 bytes allocated +==25307== +==25307== LEAK SUMMARY: +==25307== definitely lost: 0 bytes in 0 blocks +==25307== indirectly lost: 0 bytes in 0 blocks +==25307== possibly lost: 0 bytes in 0 blocks +==25307== still reachable: 24 bytes in 2 blocks +==25307== suppressed: 618,246 bytes in 8,236 blocks +==25307== Reachable blocks (those to which a pointer was found) are not shown. +==25307== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25307== +==25307== For lists of detected and suppressed errors, rerun with: -s +==25307== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestMathsCustomFunctions_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMathsCustomFunctions_valgrind.txt new file mode 100644 index 000000000..1423455c8 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMathsCustomFunctions_valgrind.txt @@ -0,0 +1,73 @@ +==24185== Memcheck, a memory error detector +==24185== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24185== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24185== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestMathsCustomFunctions -malloc_debug -malloc_dump -memory_info +==24185== Parent PID: 24036 +==24185== +==24185== +==24185== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24185== Open file descriptor 12: +==24185== at 0x4D9B07D: pipe (pipe.c:29) +==24185== by 0xAEA507D: ??? +==24185== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24185== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24185== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24185== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24185== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24185== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24185== by 0x112348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24185== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24185== by 0x110412: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24185== by 0x11030D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24185== by 0x110921: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24185== by 0x10C555: main (TestMathsCustomFunctions.cpp:18) +==24185== +==24185== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24185== at 0x4D9FA1C: __open_nocancel (open64_nocancel.c:39) +==24185== by 0x4D23BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24185== by 0x4935822: ??? +==24185== by 0x493596F: ??? +==24185== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24185== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24185== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24185== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24185== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24185== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24185== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24185== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24185== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24185== by 0x112348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24185== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24185== by 0x110412: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24185== by 0x11030D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24185== by 0x110921: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24185== by 0x10C555: main (TestMathsCustomFunctions.cpp:18) +==24185== +==24185== Open file descriptor 113: +==24185== +==24185== +==24185== Open file descriptor 110: +==24185== +==24185== +==24185== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMathsCustomFunctions_valgrind.txt +==24185== +==24185== +==24185== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24185== +==24185== +==24185== +==24185== HEAP SUMMARY: +==24185== in use at exit: 617,838 bytes in 8,238 blocks +==24185== total heap usage: 44,913 allocs, 36,675 frees, 1,338,160,723 bytes allocated +==24185== +==24185== LEAK SUMMARY: +==24185== definitely lost: 0 bytes in 0 blocks +==24185== indirectly lost: 0 bytes in 0 blocks +==24185== possibly lost: 0 bytes in 0 blocks +==24185== still reachable: 24 bytes in 2 blocks +==24185== suppressed: 617,814 bytes in 8,236 blocks +==24185== Reachable blocks (those to which a pointer was found) are not shown. +==24185== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24185== +==24185== For lists of detected and suppressed errors, rerun with: -s +==24185== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestMatrixVentilationProblem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMatrixVentilationProblem_valgrind.txt new file mode 100644 index 000000000..bc266baae --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMatrixVentilationProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41296== Memcheck, a memory error detector +==41296== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41296== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41296== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMatrixVentilationProblem -malloc_debug -malloc_dump -memory_info +==41296== Parent PID: 24036 +==41296== +==41296== +==41296== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41296== Open file descriptor 12: +==41296== at 0x81D907D: pipe (pipe.c:29) +==41296== by 0x107A407D: ??? +==41296== by 0xC01A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41296== by 0x83D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41296== by 0x836DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41296== by 0x679ED38: PetscInitialize (pinit.c:924) +==41296== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41296== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41296== by 0x117742: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41296== by 0x1128B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41296== by 0x1155E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41296== by 0x115486: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41296== by 0x115B1D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41296== by 0x110B35: main (TestMatrixVentilationProblem.cpp:19) +==41296== +==41296== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41296== at 0x81DDA1C: __open_nocancel (open64_nocancel.c:39) +==41296== by 0x8161BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41296== by 0x7A2E822: ??? +==41296== by 0x7A2E96F: ??? +==41296== by 0xC0BF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41296== by 0xC0BF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41296== by 0xC075922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41296== by 0xC01A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41296== by 0x83D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41296== by 0x836DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41296== by 0x679ED38: PetscInitialize (pinit.c:924) +==41296== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41296== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41296== by 0x117742: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41296== by 0x1128B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41296== by 0x1155E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41296== by 0x115486: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41296== by 0x115B1D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41296== by 0x110B35: main (TestMatrixVentilationProblem.cpp:19) +==41296== +==41296== Open file descriptor 113: +==41296== +==41296== +==41296== Open file descriptor 110: +==41296== +==41296== +==41296== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMatrixVentilationProblem_valgrind.txt +==41296== +==41296== +==41296== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41296== +==41296== +==41296== +==41296== HEAP SUMMARY: +==41296== in use at exit: 618,318 bytes in 8,238 blocks +==41296== total heap usage: 137,449 allocs, 129,211 frees, 1,515,200,828 bytes allocated +==41296== +==41296== LEAK SUMMARY: +==41296== definitely lost: 0 bytes in 0 blocks +==41296== indirectly lost: 0 bytes in 0 blocks +==41296== possibly lost: 0 bytes in 0 blocks +==41296== still reachable: 24 bytes in 2 blocks +==41296== suppressed: 618,294 bytes in 8,236 blocks +==41296== Reachable blocks (those to which a pointer was found) are not shown. +==41296== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41296== +==41296== For lists of detected and suppressed errors, rerun with: -s +==41296== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestMemfemMeshReader_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMemfemMeshReader_valgrind.txt new file mode 100644 index 000000000..71955d193 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMemfemMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24604== Memcheck, a memory error detector +==24604== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24604== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24604== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMemfemMeshReader -malloc_debug -malloc_dump -memory_info +==24604== Parent PID: 24036 +==24604== +==24604== +==24604== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24604== Open file descriptor 12: +==24604== at 0x6C5407D: pipe (pipe.c:29) +==24604== by 0x100C507D: ??? +==24604== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24604== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24604== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24604== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24604== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24604== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24604== by 0x118FB6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24604== by 0x11470D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24604== by 0x116FF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24604== by 0x116E98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24604== by 0x11752F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24604== by 0x112B35: main (TestMemfemMeshReader.cpp:19) +==24604== +==24604== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24604== at 0x6C58A1C: __open_nocancel (open64_nocancel.c:39) +==24604== by 0x6BDCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24604== by 0x6590822: ??? +==24604== by 0x659096F: ??? +==24604== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24604== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24604== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24604== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24604== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24604== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24604== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24604== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24604== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24604== by 0x118FB6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24604== by 0x11470D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24604== by 0x116FF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24604== by 0x116E98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24604== by 0x11752F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24604== by 0x112B35: main (TestMemfemMeshReader.cpp:19) +==24604== +==24604== Open file descriptor 113: +==24604== +==24604== +==24604== Open file descriptor 110: +==24604== +==24604== +==24604== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMemfemMeshReader_valgrind.txt +==24604== +==24604== +==24604== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24604== +==24604== +==24604== +==24604== HEAP SUMMARY: +==24604== in use at exit: 618,222 bytes in 8,238 blocks +==24604== total heap usage: 87,584 allocs, 79,346 frees, 1,340,444,942 bytes allocated +==24604== +==24604== LEAK SUMMARY: +==24604== definitely lost: 0 bytes in 0 blocks +==24604== indirectly lost: 0 bytes in 0 blocks +==24604== possibly lost: 0 bytes in 0 blocks +==24604== still reachable: 24 bytes in 2 blocks +==24604== suppressed: 618,198 bytes in 8,236 blocks +==24604== Reachable blocks (those to which a pointer was found) are not shown. +==24604== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24604== +==24604== For lists of detected and suppressed errors, rerun with: -s +==24604== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt new file mode 100644 index 000000000..826cb289f --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt @@ -0,0 +1,73 @@ +==26095== Memcheck, a memory error detector +==26095== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26095== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26095== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMeshBasedCellPopulationWithGhostNodes -malloc_debug -malloc_dump -memory_info +==26095== Parent PID: 24036 +==26095== +==26095== +==26095== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26095== Open file descriptor 12: +==26095== at 0x10D9707D: pipe (pipe.c:29) +==26095== by 0x196AD07D: ??? +==26095== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26095== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26095== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26095== by 0xF225D38: PetscInitialize (pinit.c:924) +==26095== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26095== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26095== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26095== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26095== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26095== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26095== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26095== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) +==26095== +==26095== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26095== at 0x10D9BA1C: __open_nocancel (open64_nocancel.c:39) +==26095== by 0x10D1FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26095== by 0x104B5822: ??? +==26095== by 0x104B596F: ??? +==26095== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26095== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26095== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26095== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26095== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26095== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26095== by 0xF225D38: PetscInitialize (pinit.c:924) +==26095== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26095== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26095== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26095== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26095== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26095== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26095== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26095== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) +==26095== +==26095== Open file descriptor 113: +==26095== +==26095== +==26095== Open file descriptor 110: +==26095== +==26095== +==26095== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt +==26095== +==26095== +==26095== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26095== +==26095== +==26095== +==26095== HEAP SUMMARY: +==26095== in use at exit: 618,350 bytes in 8,239 blocks +==26095== total heap usage: 221,708 allocs, 213,469 frees, 1,363,645,616 bytes allocated +==26095== +==26095== LEAK SUMMARY: +==26095== definitely lost: 0 bytes in 0 blocks +==26095== indirectly lost: 0 bytes in 0 blocks +==26095== possibly lost: 0 bytes in 0 blocks +==26095== still reachable: 56 bytes in 3 blocks +==26095== suppressed: 618,294 bytes in 8,236 blocks +==26095== Reachable blocks (those to which a pointer was found) are not shown. +==26095== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26095== +==26095== For lists of detected and suppressed errors, rerun with: -s +==26095== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestMeshBasedCellPopulation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMeshBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..9bbc3ed02 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMeshBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26093== Memcheck, a memory error detector +==26093== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26093== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26093== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26093== Parent PID: 24036 +==26093== +==26093== +==26093== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26093== Open file descriptor 12: +==26093== at 0xF92407D: pipe (pipe.c:29) +==26093== by 0x196AD07D: ??? +==26093== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26093== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26093== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26093== by 0x10210D38: PetscInitialize (pinit.c:924) +==26093== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26093== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26093== by 0x2EFB7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26093== by 0x2E6539: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26093== by 0x2EAE3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26093== by 0x2EACDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26093== by 0x2EB375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26093== by 0x2E4955: main (TestMeshBasedCellPopulation.cpp:19) +==26093== +==26093== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26093== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==26093== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26093== by 0xF137822: ??? +==26093== by 0xF13796F: ??? +==26093== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26093== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26093== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26093== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26093== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26093== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26093== by 0x10210D38: PetscInitialize (pinit.c:924) +==26093== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26093== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26093== by 0x2EFB7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26093== by 0x2E6539: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26093== by 0x2EAE3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26093== by 0x2EACDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26093== by 0x2EB375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26093== by 0x2E4955: main (TestMeshBasedCellPopulation.cpp:19) +==26093== +==26093== Open file descriptor 113: +==26093== +==26093== +==26093== Open file descriptor 110: +==26093== +==26093== +==26093== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshBasedCellPopulation_valgrind.txt +==26093== +==26093== +==26093== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26093== +==26093== +==26093== +==26093== HEAP SUMMARY: +==26093== in use at exit: 618,350 bytes in 8,239 blocks +==26093== total heap usage: 145,275 allocs, 137,036 frees, 1,366,614,570 bytes allocated +==26093== +==26093== LEAK SUMMARY: +==26093== definitely lost: 0 bytes in 0 blocks +==26093== indirectly lost: 0 bytes in 0 blocks +==26093== possibly lost: 0 bytes in 0 blocks +==26093== still reachable: 56 bytes in 3 blocks +==26093== suppressed: 618,294 bytes in 8,236 blocks +==26093== Reachable blocks (those to which a pointer was found) are not shown. +==26093== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26093== +==26093== For lists of detected and suppressed errors, rerun with: -s +==26093== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestMeshUtilityFunctions_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMeshUtilityFunctions_valgrind.txt new file mode 100644 index 000000000..718a24735 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMeshUtilityFunctions_valgrind.txt @@ -0,0 +1,73 @@ +==24639== Memcheck, a memory error detector +==24639== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24639== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24639== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMeshUtilityFunctions -malloc_debug -malloc_dump -memory_info +==24639== Parent PID: 24036 +==24639== +==24639== +==24639== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24639== Open file descriptor 12: +==24639== at 0x699E07D: pipe (pipe.c:29) +==24639== by 0x100C307D: ??? +==24639== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24639== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24639== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24639== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24639== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24639== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24639== by 0x11E530: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24639== by 0x119E33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24639== by 0x11C2F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24639== by 0x11C1F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24639== by 0x11C805: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24639== by 0x118635: main (TestMeshUtilityFunctions.cpp:18) +==24639== +==24639== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24639== at 0x69A2A1C: __open_nocancel (open64_nocancel.c:39) +==24639== by 0x6926BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24639== by 0x661F822: ??? +==24639== by 0x661F96F: ??? +==24639== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24639== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24639== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24639== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24639== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24639== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24639== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24639== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24639== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24639== by 0x11E530: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24639== by 0x119E33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24639== by 0x11C2F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24639== by 0x11C1F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24639== by 0x11C805: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24639== by 0x118635: main (TestMeshUtilityFunctions.cpp:18) +==24639== +==24639== Open file descriptor 113: +==24639== +==24639== +==24639== Open file descriptor 110: +==24639== +==24639== +==24639== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshUtilityFunctions_valgrind.txt +==24639== +==24639== +==24639== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24639== +==24639== +==24639== +==24639== HEAP SUMMARY: +==24639== in use at exit: 620,774 bytes in 8,239 blocks +==24639== total heap usage: 47,347 allocs, 39,108 frees, 1,338,386,725 bytes allocated +==24639== +==24639== LEAK SUMMARY: +==24639== definitely lost: 0 bytes in 0 blocks +==24639== indirectly lost: 0 bytes in 0 blocks +==24639== possibly lost: 0 bytes in 0 blocks +==24639== still reachable: 2,576 bytes in 3 blocks +==24639== suppressed: 618,198 bytes in 8,236 blocks +==24639== Reachable blocks (those to which a pointer was found) are not shown. +==24639== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24639== +==24639== For lists of detected and suppressed errors, rerun with: -s +==24639== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestMeshWriters_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMeshWriters_valgrind.txt new file mode 100644 index 000000000..c82c6c822 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMeshWriters_valgrind.txt @@ -0,0 +1,73 @@ +==24774== Memcheck, a memory error detector +==24774== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24774== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24774== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMeshWriters -malloc_debug -malloc_dump -memory_info +==24774== Parent PID: 24036 +==24774== +==24774== +==24774== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24774== Open file descriptor 12: +==24774== at 0x81F007D: pipe (pipe.c:29) +==24774== by 0x100C307D: ??? +==24774== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24774== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24774== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24774== by 0x667ED38: PetscInitialize (pinit.c:924) +==24774== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24774== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24774== by 0x1482F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24774== by 0x140E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24774== by 0x143F06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24774== by 0x143DA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24774== by 0x14443D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24774== by 0x13F235: main (TestMeshWriters.cpp:19) +==24774== +==24774== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24774== at 0x81F4A1C: __open_nocancel (open64_nocancel.c:39) +==24774== by 0x8178BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24774== by 0x790E822: ??? +==24774== by 0x790E96F: ??? +==24774== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24774== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24774== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24774== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24774== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24774== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24774== by 0x667ED38: PetscInitialize (pinit.c:924) +==24774== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24774== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24774== by 0x1482F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24774== by 0x140E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24774== by 0x143F06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24774== by 0x143DA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24774== by 0x14443D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24774== by 0x13F235: main (TestMeshWriters.cpp:19) +==24774== +==24774== Open file descriptor 113: +==24774== +==24774== +==24774== Open file descriptor 110: +==24774== +==24774== +==24774== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshWriters_valgrind.txt +==24774== +==24774== +==24774== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24774== +==24774== +==24774== +==24774== HEAP SUMMARY: +==24774== in use at exit: 618,222 bytes in 8,238 blocks +==24774== total heap usage: 187,274 allocs, 179,036 frees, 1,352,174,509 bytes allocated +==24774== +==24774== LEAK SUMMARY: +==24774== definitely lost: 0 bytes in 0 blocks +==24774== indirectly lost: 0 bytes in 0 blocks +==24774== possibly lost: 0 bytes in 0 blocks +==24774== still reachable: 24 bytes in 2 blocks +==24774== suppressed: 618,198 bytes in 8,236 blocks +==24774== Reachable blocks (those to which a pointer was found) are not shown. +==24774== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24774== +==24774== For lists of detected and suppressed errors, rerun with: -s +==24774== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestMirams2010WntOdeSystem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMirams2010WntOdeSystem_valgrind.txt new file mode 100644 index 000000000..ce3842513 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMirams2010WntOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==40528== Memcheck, a memory error detector +==40528== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40528== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40528== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestMirams2010WntOdeSystem -malloc_debug -malloc_dump -memory_info +==40528== Parent PID: 24036 +==40528== +==40528== +==40528== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40528== Open file descriptor 12: +==40528== at 0xF39D07D: pipe (pipe.c:29) +==40528== by 0x1B36D07D: ??? +==40528== by 0x165814CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40528== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40528== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40528== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40528== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40528== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40528== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40528== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40528== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40528== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40528== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40528== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) +==40528== +==40528== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40528== at 0xF3A1A1C: __open_nocancel (open64_nocancel.c:39) +==40528== by 0xF325BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40528== by 0xEFDE822: ??? +==40528== by 0xEFDE96F: ??? +==40528== by 0x166266DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40528== by 0x16626938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40528== by 0x165DC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40528== by 0x165812DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40528== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40528== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40528== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40528== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40528== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40528== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40528== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40528== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40528== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40528== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40528== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) +==40528== +==40528== Open file descriptor 113: +==40528== +==40528== +==40528== Open file descriptor 110: +==40528== +==40528== +==40528== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMirams2010WntOdeSystem_valgrind.txt +==40528== +==40528== +==40528== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40528== +==40528== +==40528== +==40528== HEAP SUMMARY: +==40528== in use at exit: 618,366 bytes in 8,239 blocks +==40528== total heap usage: 66,832 allocs, 58,593 frees, 1,340,373,381 bytes allocated +==40528== +==40528== LEAK SUMMARY: +==40528== definitely lost: 0 bytes in 0 blocks +==40528== indirectly lost: 0 bytes in 0 blocks +==40528== possibly lost: 0 bytes in 0 blocks +==40528== still reachable: 56 bytes in 3 blocks +==40528== suppressed: 618,310 bytes in 8,236 blocks +==40528== Reachable blocks (those to which a pointer was found) are not shown. +==40528== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40528== +==40528== For lists of detected and suppressed errors, rerun with: -s +==40528== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestMixedDimensionMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMixedDimensionMesh_valgrind.txt new file mode 100644 index 000000000..c46b5dd2b --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMixedDimensionMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24438== Memcheck, a memory error detector +==24438== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24438== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24438== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMixedDimensionMesh -malloc_debug -malloc_dump -memory_info +==24438== Parent PID: 24036 +==24438== +==24438== +==24438== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24438== Open file descriptor 12: +==24438== at 0x814B07D: pipe (pipe.c:29) +==24438== by 0x100C507D: ??? +==24438== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24438== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24438== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24438== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24438== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24438== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24438== by 0x125042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24438== by 0x11E27D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24438== by 0x121016: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24438== by 0x120EB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24438== by 0x12154D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24438== by 0x11C6A5: main (TestMixedDimensionMesh.cpp:19) +==24438== +==24438== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24438== at 0x814FA1C: __open_nocancel (open64_nocancel.c:39) +==24438== by 0x80D3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24438== by 0x6590822: ??? +==24438== by 0x659096F: ??? +==24438== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24438== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24438== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24438== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24438== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24438== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24438== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24438== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24438== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24438== by 0x125042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24438== by 0x11E27D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24438== by 0x121016: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24438== by 0x120EB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24438== by 0x12154D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24438== by 0x11C6A5: main (TestMixedDimensionMesh.cpp:19) +==24438== +==24438== Open file descriptor 113: +==24438== +==24438== +==24438== Open file descriptor 110: +==24438== +==24438== +==24438== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMixedDimensionMesh_valgrind.txt +==24438== +==24438== +==24438== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24438== +==24438== +==24438== +==24438== HEAP SUMMARY: +==24438== in use at exit: 618,222 bytes in 8,238 blocks +==24438== total heap usage: 121,798 allocs, 113,560 frees, 1,343,655,128 bytes allocated +==24438== +==24438== LEAK SUMMARY: +==24438== definitely lost: 0 bytes in 0 blocks +==24438== indirectly lost: 0 bytes in 0 blocks +==24438== possibly lost: 0 bytes in 0 blocks +==24438== still reachable: 24 bytes in 2 blocks +==24438== suppressed: 618,198 bytes in 8,236 blocks +==24438== Reachable blocks (those to which a pointer was found) are not shown. +==24438== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24438== +==24438== For lists of detected and suppressed errors, rerun with: -s +==24438== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestMockEulerIvpOdeSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMockEulerIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..9a6bc0841 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMockEulerIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24945== Memcheck, a memory error detector +==24945== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24945== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24945== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestMockEulerIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24945== Parent PID: 24036 +==24945== +==24945== +==24945== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24945== Open file descriptor 12: +==24945== at 0x4F5207D: pipe (pipe.c:29) +==24945== by 0xB1E607D: ??? +==24945== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24945== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24945== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24945== by 0x5308D38: PetscInitialize (pinit.c:924) +==24945== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24945== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24945== by 0x123542: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24945== by 0x11E7E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24945== by 0x120D60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24945== by 0x120C5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24945== by 0x12126F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24945== by 0x11CE65: main (TestMockEulerIvpOdeSolver.cpp:18) +==24945== +==24945== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24945== at 0x4F56A1C: __open_nocancel (open64_nocancel.c:39) +==24945== by 0x4EDABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24945== by 0x4B77822: ??? +==24945== by 0x4B7796F: ??? +==24945== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24945== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24945== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24945== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24945== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24945== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24945== by 0x5308D38: PetscInitialize (pinit.c:924) +==24945== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24945== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24945== by 0x123542: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24945== by 0x11E7E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24945== by 0x120D60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24945== by 0x120C5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24945== by 0x12126F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24945== by 0x11CE65: main (TestMockEulerIvpOdeSolver.cpp:18) +==24945== +==24945== Open file descriptor 113: +==24945== +==24945== +==24945== Open file descriptor 110: +==24945== +==24945== +==24945== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMockEulerIvpOdeSolver_valgrind.txt +==24945== +==24945== +==24945== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24945== +==24945== +==24945== +==24945== HEAP SUMMARY: +==24945== in use at exit: 617,902 bytes in 8,238 blocks +==24945== total heap usage: 45,125 allocs, 36,887 frees, 1,338,195,079 bytes allocated +==24945== +==24945== LEAK SUMMARY: +==24945== definitely lost: 0 bytes in 0 blocks +==24945== indirectly lost: 0 bytes in 0 blocks +==24945== possibly lost: 0 bytes in 0 blocks +==24945== still reachable: 24 bytes in 2 blocks +==24945== suppressed: 617,878 bytes in 8,236 blocks +==24945== Reachable blocks (those to which a pointer was found) are not shown. +==24945== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24945== +==24945== For lists of detected and suppressed errors, rerun with: -s +==24945== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestModernCppFeatures_valgrind.txt b/log-files/2024-09-20_21-41-09/TestModernCppFeatures_valgrind.txt new file mode 100644 index 000000000..b472866f4 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestModernCppFeatures_valgrind.txt @@ -0,0 +1,73 @@ +==24067== Memcheck, a memory error detector +==24067== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24067== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24067== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestModernCppFeatures -malloc_debug -malloc_dump -memory_info +==24067== Parent PID: 24036 +==24067== +==24067== +==24067== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24067== Open file descriptor 12: +==24067== at 0x616907D: pipe (pipe.c:29) +==24067== by 0xAEA507D: ??? +==24067== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24067== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24067== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24067== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24067== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24067== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24067== by 0x115753: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24067== by 0x111013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24067== by 0x1137AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24067== by 0x1136AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24067== by 0x113CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24067== by 0x10F815: main (TestModernCppFeatures.cpp:18) +==24067== +==24067== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24067== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24067== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24067== by 0x5CB3822: ??? +==24067== by 0x5CB396F: ??? +==24067== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24067== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24067== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24067== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24067== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24067== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24067== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24067== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24067== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24067== by 0x115753: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24067== by 0x111013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24067== by 0x1137AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24067== by 0x1136AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24067== by 0x113CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24067== by 0x10F815: main (TestModernCppFeatures.cpp:18) +==24067== +==24067== Open file descriptor 113: +==24067== +==24067== +==24067== Open file descriptor 110: +==24067== +==24067== +==24067== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestModernCppFeatures_valgrind.txt +==24067== +==24067== +==24067== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24067== +==24067== +==24067== +==24067== HEAP SUMMARY: +==24067== in use at exit: 617,838 bytes in 8,238 blocks +==24067== total heap usage: 44,920 allocs, 36,682 frees, 1,338,160,949 bytes allocated +==24067== +==24067== LEAK SUMMARY: +==24067== definitely lost: 0 bytes in 0 blocks +==24067== indirectly lost: 0 bytes in 0 blocks +==24067== possibly lost: 0 bytes in 0 blocks +==24067== still reachable: 24 bytes in 2 blocks +==24067== suppressed: 617,814 bytes in 8,236 blocks +==24067== Reachable blocks (those to which a pointer was found) are not shown. +==24067== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24067== +==24067== For lists of detected and suppressed errors, rerun with: -s +==24067== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestModifiers_valgrind.txt b/log-files/2024-09-20_21-41-09/TestModifiers_valgrind.txt new file mode 100644 index 000000000..dc5d464e2 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestModifiers_valgrind.txt @@ -0,0 +1,73 @@ +==42753== Memcheck, a memory error detector +==42753== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42753== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42753== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestModifiers -malloc_debug -malloc_dump -memory_info +==42753== Parent PID: 24036 +==42753== +==42753== +==42753== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42753== Open file descriptor 12: +==42753== at 0x88D907D: pipe (pipe.c:29) +==42753== by 0x1432407D: ??? +==42753== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42753== by 0x9FD2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42753== by 0x9F6BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42753== by 0x8C62D38: PetscInitialize (pinit.c:924) +==42753== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42753== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42753== by 0x124F74: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==42753== by 0x11FB1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42753== by 0x12265E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42753== by 0x1224FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42753== by 0x122B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42753== by 0x11DF45: main (TestModifiers.cpp:19) +==42753== +==42753== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42753== at 0x88DDA1C: __open_nocancel (open64_nocancel.c:39) +==42753== by 0x8861BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42753== by 0x8417822: ??? +==42753== by 0x841796F: ??? +==42753== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42753== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42753== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42753== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42753== by 0x9FD2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42753== by 0x9F6BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42753== by 0x8C62D38: PetscInitialize (pinit.c:924) +==42753== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42753== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42753== by 0x124F74: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==42753== by 0x11FB1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42753== by 0x12265E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42753== by 0x1224FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42753== by 0x122B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42753== by 0x11DF45: main (TestModifiers.cpp:19) +==42753== +==42753== Open file descriptor 113: +==42753== +==42753== +==42753== Open file descriptor 110: +==42753== +==42753== +==42753== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestModifiers_valgrind.txt +==42753== +==42753== +==42753== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42753== +==42753== +==42753== +==42753== HEAP SUMMARY: +==42753== in use at exit: 620,177 bytes in 8,242 blocks +==42753== total heap usage: 50,663 allocs, 42,421 frees, 1,339,474,433 bytes allocated +==42753== +==42753== LEAK SUMMARY: +==42753== definitely lost: 0 bytes in 0 blocks +==42753== indirectly lost: 0 bytes in 0 blocks +==42753== possibly lost: 0 bytes in 0 blocks +==42753== still reachable: 1,867 bytes in 6 blocks +==42753== suppressed: 618,310 bytes in 8,236 blocks +==42753== Reachable blocks (those to which a pointer was found) are not shown. +==42753== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42753== +==42753== For lists of detected and suppressed errors, rerun with: -s +==42753== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestMonodomainConductionVelocity_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMonodomainConductionVelocity_valgrind.txt new file mode 100644 index 000000000..267264af0 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMonodomainConductionVelocity_valgrind.txt @@ -0,0 +1,73 @@ +==43457== Memcheck, a memory error detector +==43457== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43457== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43457== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainConductionVelocity -malloc_debug -malloc_dump -memory_info +==43457== Parent PID: 24036 +==43457== +==43457== +==43457== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43457== Open file descriptor 12: +==43457== at 0xA85207D: pipe (pipe.c:29) +==43457== by 0x1432407D: ??? +==43457== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43457== by 0xBF4D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43457== by 0xBEE6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43457== by 0xABDBD38: PetscInitialize (pinit.c:924) +==43457== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43457== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43457== by 0x126B4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43457== by 0x121E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43457== by 0x1248CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43457== by 0x12476C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43457== by 0x124E03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43457== by 0x120235: main (TestMonodomainConductionVelocity.cpp:19) +==43457== +==43457== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43457== at 0xA856A1C: __open_nocancel (open64_nocancel.c:39) +==43457== by 0xA7DABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43457== by 0xA174822: ??? +==43457== by 0xA17496F: ??? +==43457== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43457== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43457== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43457== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43457== by 0xBF4D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43457== by 0xBEE6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43457== by 0xABDBD38: PetscInitialize (pinit.c:924) +==43457== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43457== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43457== by 0x126B4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43457== by 0x121E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43457== by 0x1248CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43457== by 0x12476C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43457== by 0x124E03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43457== by 0x120235: main (TestMonodomainConductionVelocity.cpp:19) +==43457== +==43457== Open file descriptor 113: +==43457== +==43457== +==43457== Open file descriptor 110: +==43457== +==43457== +==43457== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainConductionVelocity_valgrind.txt +==43457== +==43457== +==43457== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43457== +==43457== +==43457== +==43457== HEAP SUMMARY: +==43457== in use at exit: 618,814 bytes in 8,248 blocks +==43457== total heap usage: 385,467 allocs, 377,219 frees, 1,419,222,642 bytes allocated +==43457== +==43457== LEAK SUMMARY: +==43457== definitely lost: 0 bytes in 0 blocks +==43457== indirectly lost: 0 bytes in 0 blocks +==43457== possibly lost: 0 bytes in 0 blocks +==43457== still reachable: 24 bytes in 2 blocks +==43457== suppressed: 618,790 bytes in 8,246 blocks +==43457== Reachable blocks (those to which a pointer was found) are not shown. +==43457== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43457== +==43457== For lists of detected and suppressed errors, rerun with: -s +==43457== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestMonodomainFitzHughNagumo_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMonodomainFitzHughNagumo_valgrind.txt new file mode 100644 index 000000000..2c9e1850f --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMonodomainFitzHughNagumo_valgrind.txt @@ -0,0 +1,73 @@ +==43507== Memcheck, a memory error detector +==43507== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43507== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43507== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainFitzHughNagumo -malloc_debug -malloc_dump -memory_info +==43507== Parent PID: 24036 +==43507== +==43507== +==43507== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43507== Open file descriptor 12: +==43507== at 0xA7DF07D: pipe (pipe.c:29) +==43507== by 0x1432407D: ??? +==43507== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43507== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43507== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43507== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43507== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43507== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43507== by 0x1211B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43507== by 0x11C2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43507== by 0x11E6C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43507== by 0x11E5BE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43507== by 0x11EBD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43507== by 0x11AAB5: main (TestMonodomainFitzHughNagumo.cpp:18) +==43507== +==43507== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43507== at 0xA7E3A1C: __open_nocancel (open64_nocancel.c:39) +==43507== by 0xA767BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43507== by 0xA101822: ??? +==43507== by 0xA10196F: ??? +==43507== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43507== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43507== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43507== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43507== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43507== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43507== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43507== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43507== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43507== by 0x1211B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43507== by 0x11C2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43507== by 0x11E6C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43507== by 0x11E5BE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43507== by 0x11EBD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43507== by 0x11AAB5: main (TestMonodomainFitzHughNagumo.cpp:18) +==43507== +==43507== Open file descriptor 113: +==43507== +==43507== +==43507== Open file descriptor 110: +==43507== +==43507== +==43507== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainFitzHughNagumo_valgrind.txt +==43507== +==43507== +==43507== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43507== +==43507== +==43507== +==43507== HEAP SUMMARY: +==43507== in use at exit: 618,814 bytes in 8,248 blocks +==43507== total heap usage: 80,868 allocs, 72,620 frees, 1,344,239,373 bytes allocated +==43507== +==43507== LEAK SUMMARY: +==43507== definitely lost: 0 bytes in 0 blocks +==43507== indirectly lost: 0 bytes in 0 blocks +==43507== possibly lost: 0 bytes in 0 blocks +==43507== still reachable: 24 bytes in 2 blocks +==43507== suppressed: 618,790 bytes in 8,246 blocks +==43507== Reachable blocks (those to which a pointer was found) are not shown. +==43507== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43507== +==43507== For lists of detected and suppressed errors, rerun with: -s +==43507== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 38) diff --git a/log-files/2024-09-20_21-41-09/TestMonodomainMassLumping_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMonodomainMassLumping_valgrind.txt new file mode 100644 index 000000000..ab8f7345d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMonodomainMassLumping_valgrind.txt @@ -0,0 +1,73 @@ +==43513== Memcheck, a memory error detector +==43513== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43513== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43513== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainMassLumping -malloc_debug -malloc_dump -memory_info +==43513== Parent PID: 24036 +==43513== +==43513== +==43513== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43513== Open file descriptor 12: +==43513== at 0xA88707D: pipe (pipe.c:29) +==43513== by 0x1432407D: ??? +==43513== by 0xD5A94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43513== by 0xA175418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43513== by 0xA10ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43513== by 0xAC10D38: PetscInitialize (pinit.c:924) +==43513== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43513== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43513== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43513== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43513== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43513== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43513== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43513== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) +==43513== +==43513== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43513== at 0xA88BA1C: __open_nocancel (open64_nocancel.c:39) +==43513== by 0xA80FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43513== by 0xA072822: ??? +==43513== by 0xA07296F: ??? +==43513== by 0xD64E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43513== by 0xD64E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43513== by 0xD604922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43513== by 0xD5A92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43513== by 0xA175418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43513== by 0xA10ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43513== by 0xAC10D38: PetscInitialize (pinit.c:924) +==43513== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43513== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43513== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43513== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43513== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43513== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43513== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43513== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) +==43513== +==43513== Open file descriptor 113: +==43513== +==43513== +==43513== Open file descriptor 110: +==43513== +==43513== +==43513== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainMassLumping_valgrind.txt +==43513== +==43513== +==43513== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43513== +==43513== +==43513== +==43513== HEAP SUMMARY: +==43513== in use at exit: 618,743 bytes in 8,244 blocks +==43513== total heap usage: 406,621 allocs, 398,377 frees, 1,539,925,877 bytes allocated +==43513== +==43513== LEAK SUMMARY: +==43513== definitely lost: 0 bytes in 0 blocks +==43513== indirectly lost: 0 bytes in 0 blocks +==43513== possibly lost: 0 bytes in 0 blocks +==43513== still reachable: 24 bytes in 2 blocks +==43513== suppressed: 618,719 bytes in 8,242 blocks +==43513== Reachable blocks (those to which a pointer was found) are not shown. +==43513== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43513== +==43513== For lists of detected and suppressed errors, rerun with: -s +==43513== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 45 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestMonodomainProblem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMonodomainProblem_valgrind.txt new file mode 100644 index 000000000..86f699c5b --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMonodomainProblem_valgrind.txt @@ -0,0 +1,74 @@ +==43464== Memcheck, a memory error detector +==43464== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43464== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43464== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info +==43464== Parent PID: 24036 +==43464== +==43464== Warning: invalid file descriptor -1 in syscall close() +==43464== +==43464== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43464== Open file descriptor 12: +==43464== at 0xC10007D: pipe (pipe.c:29) +==43464== by 0x1432407D: ??? +==43464== by 0xFFEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43464== by 0xB9EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43464== by 0xB987D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43464== by 0xA2C9D38: PetscInitialize (pinit.c:924) +==43464== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43464== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43464== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43464== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43464== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43464== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43464== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43464== by 0x13FC05: main (TestMonodomainProblem.cpp:19) +==43464== +==43464== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43464== at 0xC104A1C: __open_nocancel (open64_nocancel.c:39) +==43464== by 0xC088BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43464== by 0xA174822: ??? +==43464== by 0xA17496F: ??? +==43464== by 0x100916DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43464== by 0x10091938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43464== by 0x10047922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43464== by 0xFFEA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43464== by 0xB9EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43464== by 0xB987D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43464== by 0xA2C9D38: PetscInitialize (pinit.c:924) +==43464== by 0xA1391D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43464== by 0xA139227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43464== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43464== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43464== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43464== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43464== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43464== by 0x13FC05: main (TestMonodomainProblem.cpp:19) +==43464== +==43464== Open file descriptor 113: +==43464== +==43464== +==43464== Open file descriptor 110: +==43464== +==43464== +==43464== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt +==43464== +==43464== +==43464== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43464== +==43464== +==43464== +==43464== HEAP SUMMARY: +==43464== in use at exit: 618,743 bytes in 8,244 blocks +==43464== total heap usage: 6,613,805 allocs, 6,605,561 frees, 4,016,616,123 bytes allocated +==43464== +==43464== LEAK SUMMARY: +==43464== definitely lost: 0 bytes in 0 blocks +==43464== indirectly lost: 0 bytes in 0 blocks +==43464== possibly lost: 0 bytes in 0 blocks +==43464== still reachable: 24 bytes in 2 blocks +==43464== suppressed: 618,719 bytes in 8,242 blocks +==43464== Reachable blocks (those to which a pointer was found) are not shown. +==43464== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43464== +==43464== For lists of detected and suppressed errors, rerun with: -s +==43464== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt new file mode 100644 index 000000000..77b79ec00 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43477== Memcheck, a memory error detector +==43477== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43477== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43477== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainPurkinjeAssemblersAndSolver -malloc_debug -malloc_dump -memory_info +==43477== Parent PID: 24036 +==43477== +==43477== +==43477== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43477== Open file descriptor 12: +==43477== at 0xC05407D: pipe (pipe.c:29) +==43477== by 0x1432407D: ??? +==43477== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43477== by 0xC3D1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43477== by 0xC36AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43477== by 0xA601D38: PetscInitialize (pinit.c:924) +==43477== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43477== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43477== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43477== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43477== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43477== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43477== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43477== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) +==43477== +==43477== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43477== at 0xC058A1C: __open_nocancel (open64_nocancel.c:39) +==43477== by 0xBFDCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43477== by 0xB891822: ??? +==43477== by 0xB89196F: ??? +==43477== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43477== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43477== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43477== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43477== by 0xC3D1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43477== by 0xC36AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43477== by 0xA601D38: PetscInitialize (pinit.c:924) +==43477== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43477== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43477== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43477== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43477== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43477== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43477== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43477== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) +==43477== +==43477== Open file descriptor 113: +==43477== +==43477== +==43477== Open file descriptor 110: +==43477== +==43477== +==43477== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt +==43477== +==43477== +==43477== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43477== +==43477== +==43477== +==43477== HEAP SUMMARY: +==43477== in use at exit: 618,814 bytes in 8,248 blocks +==43477== total heap usage: 83,437 allocs, 75,189 frees, 1,344,976,246 bytes allocated +==43477== +==43477== LEAK SUMMARY: +==43477== definitely lost: 0 bytes in 0 blocks +==43477== indirectly lost: 0 bytes in 0 blocks +==43477== possibly lost: 0 bytes in 0 blocks +==43477== still reachable: 24 bytes in 2 blocks +==43477== suppressed: 618,790 bytes in 8,246 blocks +==43477== Reachable blocks (those to which a pointer was found) are not shown. +==43477== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43477== +==43477== For lists of detected and suppressed errors, rerun with: -s +==43477== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 38) diff --git a/log-files/2024-09-20_21-41-09/TestMonodomainPurkinjeProblem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMonodomainPurkinjeProblem_valgrind.txt new file mode 100644 index 000000000..2fd78b198 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMonodomainPurkinjeProblem_valgrind.txt @@ -0,0 +1,73 @@ +==43487== Memcheck, a memory error detector +==43487== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43487== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43487== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainPurkinjeProblem -malloc_debug -malloc_dump -memory_info +==43487== Parent PID: 24036 +==43487== +==43487== +==43487== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43487== Open file descriptor 12: +==43487== at 0xA75007D: pipe (pipe.c:29) +==43487== by 0x1432407D: ??? +==43487== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43487== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43487== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43487== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43487== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43487== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43487== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43487== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43487== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43487== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43487== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43487== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) +==43487== +==43487== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43487== at 0xA754A1C: __open_nocancel (open64_nocancel.c:39) +==43487== by 0xA6D8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43487== by 0xA072822: ??? +==43487== by 0xA07296F: ??? +==43487== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43487== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43487== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43487== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43487== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43487== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43487== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43487== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43487== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43487== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43487== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43487== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43487== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43487== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43487== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) +==43487== +==43487== Open file descriptor 113: +==43487== +==43487== +==43487== Open file descriptor 110: +==43487== +==43487== +==43487== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainPurkinjeProblem_valgrind.txt +==43487== +==43487== +==43487== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43487== +==43487== +==43487== +==43487== HEAP SUMMARY: +==43487== in use at exit: 618,743 bytes in 8,244 blocks +==43487== total heap usage: 1,149,688 allocs, 1,141,444 frees, 2,579,749,981 bytes allocated +==43487== +==43487== LEAK SUMMARY: +==43487== definitely lost: 0 bytes in 0 blocks +==43487== indirectly lost: 0 bytes in 0 blocks +==43487== possibly lost: 0 bytes in 0 blocks +==43487== still reachable: 24 bytes in 2 blocks +==43487== suppressed: 618,719 bytes in 8,242 blocks +==43487== Reachable blocks (those to which a pointer was found) are not shown. +==43487== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43487== +==43487== For lists of detected and suppressed errors, rerun with: -s +==43487== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 63 from 31) diff --git a/log-files/2024-09-20_21-41-09/TestMonodomainStiffnessMatrixAssembler_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMonodomainStiffnessMatrixAssembler_valgrind.txt new file mode 100644 index 000000000..595ad4400 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMonodomainStiffnessMatrixAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==43456== Memcheck, a memory error detector +==43456== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43456== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43456== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainStiffnessMatrixAssembler -malloc_debug -malloc_dump -memory_info +==43456== Parent PID: 24036 +==43456== +==43456== +==43456== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43456== Open file descriptor 12: +==43456== at 0xBFE107D: pipe (pipe.c:29) +==43456== by 0x1432407D: ??? +==43456== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43456== by 0xC35E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43456== by 0xC2F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43456== by 0xA58CD38: PetscInitialize (pinit.c:924) +==43456== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43456== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43456== by 0x13BAD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43456== by 0x136853: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43456== by 0x1393FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43456== by 0x1392F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43456== by 0x139909: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43456== by 0x135055: main (TestMonodomainStiffnessMatrixAssembler.cpp:18) +==43456== +==43456== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43456== at 0xBFE5A1C: __open_nocancel (open64_nocancel.c:39) +==43456== by 0xBF69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43456== by 0xB81C822: ??? +==43456== by 0xB81C96F: ??? +==43456== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43456== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43456== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43456== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43456== by 0xC35E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43456== by 0xC2F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43456== by 0xA58CD38: PetscInitialize (pinit.c:924) +==43456== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43456== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43456== by 0x13BAD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43456== by 0x136853: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43456== by 0x1393FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43456== by 0x1392F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43456== by 0x139909: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43456== by 0x135055: main (TestMonodomainStiffnessMatrixAssembler.cpp:18) +==43456== +==43456== Open file descriptor 113: +==43456== +==43456== +==43456== Open file descriptor 110: +==43456== +==43456== +==43456== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainStiffnessMatrixAssembler_valgrind.txt +==43456== +==43456== +==43456== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43456== +==43456== +==43456== +==43456== HEAP SUMMARY: +==43456== in use at exit: 618,334 bytes in 8,238 blocks +==43456== total heap usage: 49,642 allocs, 41,404 frees, 1,338,639,721 bytes allocated +==43456== +==43456== LEAK SUMMARY: +==43456== definitely lost: 0 bytes in 0 blocks +==43456== indirectly lost: 0 bytes in 0 blocks +==43456== possibly lost: 0 bytes in 0 blocks +==43456== still reachable: 24 bytes in 2 blocks +==43456== suppressed: 618,310 bytes in 8,236 blocks +==43456== Reachable blocks (those to which a pointer was found) are not shown. +==43456== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43456== +==43456== For lists of detected and suppressed errors, rerun with: -s +==43456== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestMonodomainTissue_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMonodomainTissue_valgrind.txt new file mode 100644 index 000000000..b1698083c --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMonodomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==43515== Memcheck, a memory error detector +==43515== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43515== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43515== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainTissue -malloc_debug -malloc_dump -memory_info +==43515== Parent PID: 24036 +==43515== +==43515== +==43515== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43515== Open file descriptor 12: +==43515== at 0xBB1007D: pipe (pipe.c:29) +==43515== by 0x1432407D: ??? +==43515== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43515== by 0xBE8B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43515== by 0xBE24D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43515== by 0xA1C5D38: PetscInitialize (pinit.c:924) +==43515== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43515== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43515== by 0x1294CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43515== by 0x1242BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43515== by 0x126FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43515== by 0x126E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43515== by 0x1274D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43515== by 0x1226E5: main (TestMonodomainTissue.cpp:19) +==43515== +==43515== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43515== at 0xBB14A1C: __open_nocancel (open64_nocancel.c:39) +==43515== by 0xBA98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43515== by 0xA072822: ??? +==43515== by 0xA07296F: ??? +==43515== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43515== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43515== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43515== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43515== by 0xBE8B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43515== by 0xBE24D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43515== by 0xA1C5D38: PetscInitialize (pinit.c:924) +==43515== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43515== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43515== by 0x1294CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43515== by 0x1242BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43515== by 0x126FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43515== by 0x126E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43515== by 0x1274D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43515== by 0x1226E5: main (TestMonodomainTissue.cpp:19) +==43515== +==43515== Open file descriptor 113: +==43515== +==43515== +==43515== Open file descriptor 110: +==43515== +==43515== +==43515== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainTissue_valgrind.txt +==43515== +==43515== +==43515== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43515== +==43515== +==43515== +==43515== HEAP SUMMARY: +==43515== in use at exit: 618,334 bytes in 8,238 blocks +==43515== total heap usage: 260,747 allocs, 252,509 frees, 1,394,488,392 bytes allocated +==43515== +==43515== LEAK SUMMARY: +==43515== definitely lost: 0 bytes in 0 blocks +==43515== indirectly lost: 0 bytes in 0 blocks +==43515== possibly lost: 0 bytes in 0 blocks +==43515== still reachable: 24 bytes in 2 blocks +==43515== suppressed: 618,310 bytes in 8,236 blocks +==43515== Reachable blocks (those to which a pointer was found) are not shown. +==43515== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43515== +==43515== For lists of detected and suppressed errors, rerun with: -s +==43515== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestMonodomainWithSvi_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMonodomainWithSvi_valgrind.txt new file mode 100644 index 000000000..012192f42 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMonodomainWithSvi_valgrind.txt @@ -0,0 +1,73 @@ +==43523== Memcheck, a memory error detector +==43523== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43523== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43523== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainWithSvi -malloc_debug -malloc_dump -memory_info +==43523== Parent PID: 24036 +==43523== +==43523== +==43523== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43523== Open file descriptor 12: +==43523== at 0xA7DF07D: pipe (pipe.c:29) +==43523== by 0x1432407D: ??? +==43523== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43523== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43523== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43523== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43523== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43523== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43523== by 0x123842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43523== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43523== by 0x121416: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43523== by 0x1212B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43523== by 0x12194D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43523== by 0x11D175: main (TestMonodomainWithSvi.cpp:19) +==43523== +==43523== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43523== at 0xA7E3A1C: __open_nocancel (open64_nocancel.c:39) +==43523== by 0xA767BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43523== by 0xA101822: ??? +==43523== by 0xA10196F: ??? +==43523== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43523== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43523== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43523== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43523== by 0xBED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43523== by 0xBE71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43523== by 0xAB68D38: PetscInitialize (pinit.c:924) +==43523== by 0xA0C61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43523== by 0xA0C6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43523== by 0x123842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43523== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43523== by 0x121416: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43523== by 0x1212B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43523== by 0x12194D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43523== by 0x11D175: main (TestMonodomainWithSvi.cpp:19) +==43523== +==43523== Open file descriptor 113: +==43523== +==43523== +==43523== Open file descriptor 110: +==43523== +==43523== +==43523== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainWithSvi_valgrind.txt +==43523== +==43523== +==43523== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43523== +==43523== +==43523== +==43523== HEAP SUMMARY: +==43523== in use at exit: 618,743 bytes in 8,244 blocks +==43523== total heap usage: 3,755,452 allocs, 3,747,208 frees, 1,783,479,685 bytes allocated +==43523== +==43523== LEAK SUMMARY: +==43523== definitely lost: 0 bytes in 0 blocks +==43523== indirectly lost: 0 bytes in 0 blocks +==43523== possibly lost: 0 bytes in 0 blocks +==43523== still reachable: 24 bytes in 2 blocks +==43523== suppressed: 618,719 bytes in 8,242 blocks +==43523== Reachable blocks (those to which a pointer was found) are not shown. +==43523== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43523== +==43523== For lists of detected and suppressed errors, rerun with: -s +==43523== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 78 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestMonodomainWithTimeAdaptivity_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMonodomainWithTimeAdaptivity_valgrind.txt new file mode 100644 index 000000000..79005aec2 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMonodomainWithTimeAdaptivity_valgrind.txt @@ -0,0 +1,73 @@ +==43538== Memcheck, a memory error detector +==43538== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43538== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43538== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainWithTimeAdaptivity -malloc_debug -malloc_dump -memory_info +==43538== Parent PID: 24036 +==43538== +==43538== +==43538== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43538== Open file descriptor 12: +==43538== at 0xBC0507D: pipe (pipe.c:29) +==43538== by 0x1432407D: ??? +==43538== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43538== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43538== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43538== by 0xA160D38: PetscInitialize (pinit.c:924) +==43538== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43538== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43538== by 0x127824: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43538== by 0x121AED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43538== by 0x124B6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43538== by 0x124A0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43538== by 0x1250A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43538== by 0x11FF15: main (TestMonodomainWithTimeAdaptivity.cpp:19) +==43538== +==43538== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43538== at 0xBC09A1C: __open_nocancel (open64_nocancel.c:39) +==43538== by 0xBB8DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43538== by 0xB3F0822: ??? +==43538== by 0xB3F096F: ??? +==43538== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43538== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43538== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43538== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43538== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43538== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43538== by 0xA160D38: PetscInitialize (pinit.c:924) +==43538== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43538== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43538== by 0x127824: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43538== by 0x121AED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43538== by 0x124B6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43538== by 0x124A0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43538== by 0x1250A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43538== by 0x11FF15: main (TestMonodomainWithTimeAdaptivity.cpp:19) +==43538== +==43538== Open file descriptor 113: +==43538== +==43538== +==43538== Open file descriptor 110: +==43538== +==43538== +==43538== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainWithTimeAdaptivity_valgrind.txt +==43538== +==43538== +==43538== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43538== +==43538== +==43538== +==43538== HEAP SUMMARY: +==43538== in use at exit: 618,743 bytes in 8,244 blocks +==43538== total heap usage: 1,145,049 allocs, 1,136,805 frees, 1,400,680,645 bytes allocated +==43538== +==43538== LEAK SUMMARY: +==43538== definitely lost: 0 bytes in 0 blocks +==43538== indirectly lost: 0 bytes in 0 blocks +==43538== possibly lost: 0 bytes in 0 blocks +==43538== still reachable: 24 bytes in 2 blocks +==43538== suppressed: 618,719 bytes in 8,242 blocks +==43538== Reachable blocks (those to which a pointer was found) are not shown. +==43538== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43538== +==43538== For lists of detected and suppressed errors, rerun with: -s +==43538== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 42 from 31) diff --git a/log-files/2024-09-20_21-41-09/TestMoreMechanics_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMoreMechanics_valgrind.txt new file mode 100644 index 000000000..c01ff779e --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMoreMechanics_valgrind.txt @@ -0,0 +1,73 @@ +==25308== Memcheck, a memory error detector +==25308== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25308== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25308== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMoreMechanics -malloc_debug -malloc_dump -memory_info +==25308== Parent PID: 24036 +==25308== +==25308== +==25308== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25308== Open file descriptor 12: +==25308== at 0x866707D: pipe (pipe.c:29) +==25308== by 0x106D807D: ??? +==25308== by 0xC4EC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25308== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25308== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25308== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25308== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25308== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25308== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25308== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25308== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25308== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25308== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25308== by 0x135775: main (TestMoreMechanics.cpp:19) +==25308== +==25308== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25308== at 0x866BA1C: __open_nocancel (open64_nocancel.c:39) +==25308== by 0x85EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25308== by 0x7EBC822: ??? +==25308== by 0x7EBC96F: ??? +==25308== by 0xC5916DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25308== by 0xC591938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25308== by 0xC547922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25308== by 0xC4EC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25308== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25308== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25308== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25308== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25308== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25308== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25308== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25308== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25308== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25308== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25308== by 0x135775: main (TestMoreMechanics.cpp:19) +==25308== +==25308== Open file descriptor 113: +==25308== +==25308== +==25308== Open file descriptor 110: +==25308== +==25308== +==25308== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMoreMechanics_valgrind.txt +==25308== +==25308== +==25308== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25308== +==25308== +==25308== +==25308== HEAP SUMMARY: +==25308== in use at exit: 618,199 bytes in 8,234 blocks +==25308== total heap usage: 376,390 allocs, 368,156 frees, 1,439,963,305 bytes allocated +==25308== +==25308== LEAK SUMMARY: +==25308== definitely lost: 0 bytes in 0 blocks +==25308== indirectly lost: 0 bytes in 0 blocks +==25308== possibly lost: 0 bytes in 0 blocks +==25308== still reachable: 24 bytes in 2 blocks +==25308== suppressed: 618,175 bytes in 8,232 blocks +==25308== Reachable blocks (those to which a pointer was found) are not shown. +==25308== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25308== +==25308== For lists of detected and suppressed errors, rerun with: -s +==25308== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-20_21-41-09/TestMultiLobeAirwayGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMultiLobeAirwayGenerator_valgrind.txt new file mode 100644 index 000000000..9b9cd4788 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMultiLobeAirwayGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==41274== Memcheck, a memory error detector +==41274== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41274== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41274== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMultiLobeAirwayGenerator -malloc_debug -malloc_dump -memory_info +==41274== Parent PID: 24036 +==41274== +==41274== +==41274== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41274== Open file descriptor 12: +==41274== at 0x8D2D07D: pipe (pipe.c:29) +==41274== by 0x107A507D: ??? +==41274== by 0xC0944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41274== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41274== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41274== by 0x679ED38: PetscInitialize (pinit.c:924) +==41274== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41274== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41274== by 0x11A3B7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41274== by 0x11592D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41274== by 0x118434: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41274== by 0x1182D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41274== by 0x11896B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41274== by 0x113D55: main (TestMultiLobeAirwayGenerator.cpp:19) +==41274== +==41274== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41274== at 0x8D31A1C: __open_nocancel (open64_nocancel.c:39) +==41274== by 0x8CB5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41274== by 0x7A2E822: ??? +==41274== by 0x7A2E96F: ??? +==41274== by 0xC1396DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41274== by 0xC139938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41274== by 0xC0EF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41274== by 0xC0942DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41274== by 0x7B31418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41274== by 0x7ACAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41274== by 0x679ED38: PetscInitialize (pinit.c:924) +==41274== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41274== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41274== by 0x11A3B7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41274== by 0x11592D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41274== by 0x118434: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41274== by 0x1182D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41274== by 0x11896B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41274== by 0x113D55: main (TestMultiLobeAirwayGenerator.cpp:19) +==41274== +==41274== Open file descriptor 113: +==41274== +==41274== +==41274== Open file descriptor 110: +==41274== +==41274== +==41274== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMultiLobeAirwayGenerator_valgrind.txt +==41274== +==41274== +==41274== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41274== +==41274== +==41274== +==41274== HEAP SUMMARY: +==41274== in use at exit: 618,318 bytes in 8,238 blocks +==41274== total heap usage: 175,715 allocs, 167,477 frees, 1,419,543,185 bytes allocated +==41274== +==41274== LEAK SUMMARY: +==41274== definitely lost: 0 bytes in 0 blocks +==41274== indirectly lost: 0 bytes in 0 blocks +==41274== possibly lost: 0 bytes in 0 blocks +==41274== still reachable: 24 bytes in 2 blocks +==41274== suppressed: 618,294 bytes in 8,236 blocks +==41274== Reachable blocks (those to which a pointer was found) are not shown. +==41274== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41274== +==41274== For lists of detected and suppressed errors, rerun with: -s +==41274== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestMutableMeshRemesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMutableMeshRemesh_valgrind.txt new file mode 100644 index 000000000..d25868341 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMutableMeshRemesh_valgrind.txt @@ -0,0 +1,73 @@ +==24459== Memcheck, a memory error detector +==24459== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24459== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24459== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableMeshRemesh -malloc_debug -malloc_dump -memory_info +==24459== Parent PID: 24036 +==24459== +==24459== +==24459== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24459== Open file descriptor 12: +==24459== at 0x6C5407D: pipe (pipe.c:29) +==24459== by 0x100C507D: ??? +==24459== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24459== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24459== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24459== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24459== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24459== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24459== by 0x1241D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24459== by 0x11F1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24459== by 0x121F40: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24459== by 0x121DE0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24459== by 0x122477: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24459== by 0x11D615: main (TestMutableMeshRemesh.cpp:19) +==24459== +==24459== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24459== at 0x6C58A1C: __open_nocancel (open64_nocancel.c:39) +==24459== by 0x6BDCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24459== by 0x6590822: ??? +==24459== by 0x659096F: ??? +==24459== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24459== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24459== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24459== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24459== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24459== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24459== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24459== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24459== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24459== by 0x1241D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24459== by 0x11F1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24459== by 0x121F40: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24459== by 0x121DE0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24459== by 0x122477: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24459== by 0x11D615: main (TestMutableMeshRemesh.cpp:19) +==24459== +==24459== Open file descriptor 113: +==24459== +==24459== +==24459== Open file descriptor 110: +==24459== +==24459== +==24459== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableMeshRemesh_valgrind.txt +==24459== +==24459== +==24459== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24459== +==24459== +==24459== +==24459== HEAP SUMMARY: +==24459== in use at exit: 618,222 bytes in 8,238 blocks +==24459== total heap usage: 264,076 allocs, 255,838 frees, 1,353,001,839 bytes allocated +==24459== +==24459== LEAK SUMMARY: +==24459== definitely lost: 0 bytes in 0 blocks +==24459== indirectly lost: 0 bytes in 0 blocks +==24459== possibly lost: 0 bytes in 0 blocks +==24459== still reachable: 24 bytes in 2 blocks +==24459== suppressed: 618,198 bytes in 8,236 blocks +==24459== Reachable blocks (those to which a pointer was found) are not shown. +==24459== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24459== +==24459== For lists of detected and suppressed errors, rerun with: -s +==24459== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestMutableMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMutableMesh_valgrind.txt new file mode 100644 index 000000000..619696c77 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMutableMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24457== Memcheck, a memory error detector +==24457== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24457== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24457== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableMesh -malloc_debug -malloc_dump -memory_info +==24457== Parent PID: 24036 +==24457== +==24457== +==24457== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24457== Open file descriptor 12: +==24457== at 0x6C9607D: pipe (pipe.c:29) +==24457== by 0x100C507D: ??? +==24457== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24457== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24457== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24457== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24457== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24457== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24457== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24457== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24457== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24457== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24457== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24457== by 0x12C225: main (TestMutableMesh.cpp:19) +==24457== +==24457== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24457== at 0x6C9AA1C: __open_nocancel (open64_nocancel.c:39) +==24457== by 0x6C1EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24457== by 0x6590822: ??? +==24457== by 0x659096F: ??? +==24457== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24457== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24457== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24457== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24457== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24457== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24457== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24457== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24457== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24457== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24457== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24457== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24457== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24457== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24457== by 0x12C225: main (TestMutableMesh.cpp:19) +==24457== +==24457== Open file descriptor 113: +==24457== +==24457== +==24457== Open file descriptor 110: +==24457== +==24457== +==24457== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableMesh_valgrind.txt +==24457== +==24457== +==24457== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24457== +==24457== +==24457== +==24457== HEAP SUMMARY: +==24457== in use at exit: 618,222 bytes in 8,238 blocks +==24457== total heap usage: 705,950 allocs, 697,712 frees, 1,368,455,465 bytes allocated +==24457== +==24457== LEAK SUMMARY: +==24457== definitely lost: 0 bytes in 0 blocks +==24457== indirectly lost: 0 bytes in 0 blocks +==24457== possibly lost: 0 bytes in 0 blocks +==24457== still reachable: 24 bytes in 2 blocks +==24457== suppressed: 618,198 bytes in 8,236 blocks +==24457== Reachable blocks (those to which a pointer was found) are not shown. +==24457== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24457== +==24457== For lists of detected and suppressed errors, rerun with: -s +==24457== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt new file mode 100644 index 000000000..8c0c8aec6 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt @@ -0,0 +1,73 @@ +==26096== Memcheck, a memory error detector +==26096== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26096== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26096== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMutableVertexMeshOperationsWithPopulationSrn -malloc_debug -malloc_dump -memory_info +==26096== Parent PID: 24036 +==26096== +==26096== +==26096== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26096== Open file descriptor 12: +==26096== at 0x10CB007D: pipe (pipe.c:29) +==26096== by 0x196AD07D: ??? +==26096== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26096== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26096== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26096== by 0xF225D38: PetscInitialize (pinit.c:924) +==26096== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26096== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26096== by 0x12FA43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26096== by 0x12AAD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26096== by 0x12D2E4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26096== by 0x12D1E0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26096== by 0x12D7F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26096== by 0x1292D5: main (TestMutableVertexMeshOperationsWithPopulationSrn.cpp:18) +==26096== +==26096== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26096== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==26096== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26096== by 0x104B5822: ??? +==26096== by 0x104B596F: ??? +==26096== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26096== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26096== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26096== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26096== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26096== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26096== by 0xF225D38: PetscInitialize (pinit.c:924) +==26096== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26096== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26096== by 0x12FA43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26096== by 0x12AAD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26096== by 0x12D2E4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26096== by 0x12D1E0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26096== by 0x12D7F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26096== by 0x1292D5: main (TestMutableVertexMeshOperationsWithPopulationSrn.cpp:18) +==26096== +==26096== Open file descriptor 113: +==26096== +==26096== +==26096== Open file descriptor 110: +==26096== +==26096== +==26096== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt +==26096== +==26096== +==26096== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26096== +==26096== +==26096== +==26096== HEAP SUMMARY: +==26096== in use at exit: 618,350 bytes in 8,239 blocks +==26096== total heap usage: 60,807 allocs, 52,568 frees, 1,339,311,051 bytes allocated +==26096== +==26096== LEAK SUMMARY: +==26096== definitely lost: 0 bytes in 0 blocks +==26096== indirectly lost: 0 bytes in 0 blocks +==26096== possibly lost: 0 bytes in 0 blocks +==26096== still reachable: 56 bytes in 3 blocks +==26096== suppressed: 618,294 bytes in 8,236 blocks +==26096== Reachable blocks (those to which a pointer was found) are not shown. +==26096== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26096== +==26096== For lists of detected and suppressed errors, rerun with: -s +==26096== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestMutableVertexMeshReMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMutableVertexMeshReMesh_valgrind.txt new file mode 100644 index 000000000..ea61a0ddf --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMutableVertexMeshReMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24707== Memcheck, a memory error detector +==24707== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24707== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24707== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMeshReMesh -malloc_debug -malloc_dump -memory_info +==24707== Parent PID: 24036 +==24707== +==24707== +==24707== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24707== Open file descriptor 12: +==24707== at 0x814B07D: pipe (pipe.c:29) +==24707== by 0x100C507D: ??? +==24707== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24707== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24707== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24707== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24707== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24707== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24707== by 0x1B0C07: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24707== by 0x1A87FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24707== by 0x1AC684: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24707== by 0x1AC524: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24707== by 0x1ACBBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24707== by 0x1A6C25: main (TestMutableVertexMeshReMesh.cpp:19) +==24707== +==24707== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24707== at 0x814FA1C: __open_nocancel (open64_nocancel.c:39) +==24707== by 0x80D3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24707== by 0x6590822: ??? +==24707== by 0x659096F: ??? +==24707== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24707== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24707== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24707== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24707== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24707== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24707== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24707== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24707== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24707== by 0x1B0C07: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24707== by 0x1A87FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24707== by 0x1AC684: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24707== by 0x1AC524: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24707== by 0x1ACBBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24707== by 0x1A6C25: main (TestMutableVertexMeshReMesh.cpp:19) +==24707== +==24707== Open file descriptor 113: +==24707== +==24707== +==24707== Open file descriptor 110: +==24707== +==24707== +==24707== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshReMesh_valgrind.txt +==24707== +==24707== +==24707== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24707== +==24707== +==24707== +==24707== HEAP SUMMARY: +==24707== in use at exit: 620,774 bytes in 8,239 blocks +==24707== total heap usage: 81,707 allocs, 73,468 frees, 1,340,047,898 bytes allocated +==24707== +==24707== LEAK SUMMARY: +==24707== definitely lost: 0 bytes in 0 blocks +==24707== indirectly lost: 0 bytes in 0 blocks +==24707== possibly lost: 0 bytes in 0 blocks +==24707== still reachable: 2,576 bytes in 3 blocks +==24707== suppressed: 618,198 bytes in 8,236 blocks +==24707== Reachable blocks (those to which a pointer was found) are not shown. +==24707== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24707== +==24707== For lists of detected and suppressed errors, rerun with: -s +==24707== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestMutableVertexMeshRosetteMethods_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMutableVertexMeshRosetteMethods_valgrind.txt new file mode 100644 index 000000000..25294f5fd --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMutableVertexMeshRosetteMethods_valgrind.txt @@ -0,0 +1,73 @@ +==24708== Memcheck, a memory error detector +==24708== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24708== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24708== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMeshRosetteMethods -malloc_debug -malloc_dump -memory_info +==24708== Parent PID: 24036 +==24708== +==24708== +==24708== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24708== Open file descriptor 12: +==24708== at 0x823407D: pipe (pipe.c:29) +==24708== by 0x100C507D: ??? +==24708== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24708== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24708== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24708== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24708== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24708== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24708== by 0x122CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24708== by 0x11DCDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24708== by 0x120960: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24708== by 0x120800: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24708== by 0x120E97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24708== by 0x11C105: main (TestMutableVertexMeshRosetteMethods.cpp:19) +==24708== +==24708== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24708== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24708== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24708== by 0x6590822: ??? +==24708== by 0x659096F: ??? +==24708== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24708== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24708== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24708== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24708== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24708== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24708== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24708== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24708== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24708== by 0x122CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24708== by 0x11DCDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24708== by 0x120960: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24708== by 0x120800: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24708== by 0x120E97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24708== by 0x11C105: main (TestMutableVertexMeshRosetteMethods.cpp:19) +==24708== +==24708== Open file descriptor 113: +==24708== +==24708== +==24708== Open file descriptor 110: +==24708== +==24708== +==24708== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshRosetteMethods_valgrind.txt +==24708== +==24708== +==24708== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24708== +==24708== +==24708== +==24708== HEAP SUMMARY: +==24708== in use at exit: 620,774 bytes in 8,239 blocks +==24708== total heap usage: 53,313 allocs, 45,074 frees, 1,338,842,201 bytes allocated +==24708== +==24708== LEAK SUMMARY: +==24708== definitely lost: 0 bytes in 0 blocks +==24708== indirectly lost: 0 bytes in 0 blocks +==24708== possibly lost: 0 bytes in 0 blocks +==24708== still reachable: 2,576 bytes in 3 blocks +==24708== suppressed: 618,198 bytes in 8,236 blocks +==24708== Reachable blocks (those to which a pointer was found) are not shown. +==24708== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24708== +==24708== For lists of detected and suppressed errors, rerun with: -s +==24708== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestMutableVertexMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestMutableVertexMesh_valgrind.txt new file mode 100644 index 000000000..852e81778 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestMutableVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24688== Memcheck, a memory error detector +==24688== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24688== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24688== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMesh -malloc_debug -malloc_dump -memory_info +==24688== Parent PID: 24036 +==24688== +==24688== +==24688== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24688== Open file descriptor 12: +==24688== at 0x814B07D: pipe (pipe.c:29) +==24688== by 0x100C507D: ??? +==24688== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24688== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24688== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24688== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24688== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24688== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24688== by 0x1B5143: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24688== by 0x1AE9BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24688== by 0x1B27F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24688== by 0x1B2696: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24688== by 0x1B2D2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24688== by 0x1ACDE5: main (TestMutableVertexMesh.cpp:19) +==24688== +==24688== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24688== at 0x814FA1C: __open_nocancel (open64_nocancel.c:39) +==24688== by 0x80D3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24688== by 0x6590822: ??? +==24688== by 0x659096F: ??? +==24688== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24688== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24688== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24688== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24688== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24688== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24688== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24688== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24688== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24688== by 0x1B5143: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24688== by 0x1AE9BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24688== by 0x1B27F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24688== by 0x1B2696: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24688== by 0x1B2D2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24688== by 0x1ACDE5: main (TestMutableVertexMesh.cpp:19) +==24688== +==24688== Open file descriptor 113: +==24688== +==24688== +==24688== Open file descriptor 110: +==24688== +==24688== +==24688== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMesh_valgrind.txt +==24688== +==24688== +==24688== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24688== +==24688== +==24688== +==24688== HEAP SUMMARY: +==24688== in use at exit: 620,774 bytes in 8,239 blocks +==24688== total heap usage: 58,722 allocs, 50,483 frees, 1,339,662,949 bytes allocated +==24688== +==24688== LEAK SUMMARY: +==24688== definitely lost: 0 bytes in 0 blocks +==24688== indirectly lost: 0 bytes in 0 blocks +==24688== possibly lost: 0 bytes in 0 blocks +==24688== still reachable: 2,576 bytes in 3 blocks +==24688== suppressed: 618,198 bytes in 8,236 blocks +==24688== Reachable blocks (those to which a pointer was found) are not shown. +==24688== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24688== +==24688== For lists of detected and suppressed errors, rerun with: -s +==24688== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestNeumannStimulus_valgrind.txt b/log-files/2024-09-20_21-41-09/TestNeumannStimulus_valgrind.txt new file mode 100644 index 000000000..d23514564 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestNeumannStimulus_valgrind.txt @@ -0,0 +1,73 @@ +==43717== Memcheck, a memory error detector +==43717== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43717== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43717== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestNeumannStimulus -malloc_debug -malloc_dump -memory_info +==43717== Parent PID: 24036 +==43717== +==43717== +==43717== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43717== Open file descriptor 12: +==43717== at 0xAB7C07D: pipe (pipe.c:29) +==43717== by 0x1432407D: ??? +==43717== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43717== by 0xC277418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43717== by 0xC210D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43717== by 0xAF05D38: PetscInitialize (pinit.c:924) +==43717== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43717== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43717== by 0x12243C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43717== by 0x11D413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43717== by 0x11F854: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43717== by 0x11F750: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43717== by 0x11FD63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43717== by 0x11BC15: main (TestNeumannStimulus.cpp:18) +==43717== +==43717== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43717== at 0xAB80A1C: __open_nocancel (open64_nocancel.c:39) +==43717== by 0xAB04BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43717== by 0xA49E822: ??? +==43717== by 0xA49E96F: ??? +==43717== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43717== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43717== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43717== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43717== by 0xC277418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43717== by 0xC210D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43717== by 0xAF05D38: PetscInitialize (pinit.c:924) +==43717== by 0xA4631D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43717== by 0xA463227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43717== by 0x12243C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43717== by 0x11D413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43717== by 0x11F854: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43717== by 0x11F750: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43717== by 0x11FD63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43717== by 0x11BC15: main (TestNeumannStimulus.cpp:18) +==43717== +==43717== Open file descriptor 113: +==43717== +==43717== +==43717== Open file descriptor 110: +==43717== +==43717== +==43717== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNeumannStimulus_valgrind.txt +==43717== +==43717== +==43717== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43717== +==43717== +==43717== +==43717== HEAP SUMMARY: +==43717== in use at exit: 618,814 bytes in 8,248 blocks +==43717== total heap usage: 100,654 allocs, 92,406 frees, 1,350,843,815 bytes allocated +==43717== +==43717== LEAK SUMMARY: +==43717== definitely lost: 0 bytes in 0 blocks +==43717== indirectly lost: 0 bytes in 0 blocks +==43717== possibly lost: 0 bytes in 0 blocks +==43717== still reachable: 24 bytes in 2 blocks +==43717== suppressed: 618,790 bytes in 8,246 blocks +==43717== Reachable blocks (those to which a pointer was found) are not shown. +==43717== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43717== +==43717== For lists of detected and suppressed errors, rerun with: -s +==43717== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2024-09-20_21-41-09/TestNhsModelWithBackwardSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestNhsModelWithBackwardSolver_valgrind.txt new file mode 100644 index 000000000..ca7558b90 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestNhsModelWithBackwardSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43447== Memcheck, a memory error detector +==43447== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43447== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43447== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestNhsModelWithBackwardSolver -malloc_debug -malloc_dump -memory_info +==43447== Parent PID: 24036 +==43447== +==43447== +==43447== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43447== Open file descriptor 12: +==43447== at 0x87AE07D: pipe (pipe.c:29) +==43447== by 0x1432407D: ??? +==43447== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43447== by 0x9EA9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43447== by 0x9E42D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43447== by 0x8B39D38: PetscInitialize (pinit.c:924) +==43447== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43447== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43447== by 0x118B18: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43447== by 0x114093: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43447== by 0x11647E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43447== by 0x116379: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43447== by 0x11698D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43447== by 0x112895: main (TestNhsModelWithBackwardSolver.cpp:18) +==43447== +==43447== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43447== at 0x87B2A1C: __open_nocancel (open64_nocancel.c:39) +==43447== by 0x8736BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43447== by 0x8417822: ??? +==43447== by 0x841796F: ??? +==43447== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43447== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43447== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43447== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43447== by 0x9EA9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43447== by 0x9E42D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43447== by 0x8B39D38: PetscInitialize (pinit.c:924) +==43447== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43447== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43447== by 0x118B18: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43447== by 0x114093: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43447== by 0x11647E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43447== by 0x116379: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43447== by 0x11698D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43447== by 0x112895: main (TestNhsModelWithBackwardSolver.cpp:18) +==43447== +==43447== Open file descriptor 113: +==43447== +==43447== +==43447== Open file descriptor 110: +==43447== +==43447== +==43447== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNhsModelWithBackwardSolver_valgrind.txt +==43447== +==43447== +==43447== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43447== +==43447== +==43447== +==43447== HEAP SUMMARY: +==43447== in use at exit: 618,334 bytes in 8,238 blocks +==43447== total heap usage: 49,065 allocs, 40,827 frees, 1,338,539,640 bytes allocated +==43447== +==43447== LEAK SUMMARY: +==43447== definitely lost: 0 bytes in 0 blocks +==43447== indirectly lost: 0 bytes in 0 blocks +==43447== possibly lost: 0 bytes in 0 blocks +==43447== still reachable: 24 bytes in 2 blocks +==43447== suppressed: 618,310 bytes in 8,236 blocks +==43447== Reachable blocks (those to which a pointer was found) are not shown. +==43447== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43447== +==43447== For lists of detected and suppressed errors, rerun with: -s +==43447== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestNodeAttributes_valgrind.txt b/log-files/2024-09-20_21-41-09/TestNodeAttributes_valgrind.txt new file mode 100644 index 000000000..e61300c8a --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestNodeAttributes_valgrind.txt @@ -0,0 +1,73 @@ +==24485== Memcheck, a memory error detector +==24485== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24485== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24485== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNodeAttributes -malloc_debug -malloc_dump -memory_info +==24485== Parent PID: 24036 +==24485== +==24485== +==24485== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24485== Open file descriptor 12: +==24485== at 0x695107D: pipe (pipe.c:29) +==24485== by 0x100C307D: ??? +==24485== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24485== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24485== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24485== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24485== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24485== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24485== by 0x1396D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24485== by 0x134029: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24485== by 0x136E5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24485== by 0x136CFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24485== by 0x137391: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24485== by 0x132445: main (TestNodeAttributes.cpp:19) +==24485== +==24485== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24485== at 0x6955A1C: __open_nocancel (open64_nocancel.c:39) +==24485== by 0x68D9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24485== by 0x6590822: ??? +==24485== by 0x659096F: ??? +==24485== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24485== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24485== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24485== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24485== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24485== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24485== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24485== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24485== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24485== by 0x1396D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24485== by 0x134029: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24485== by 0x136E5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24485== by 0x136CFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24485== by 0x137391: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24485== by 0x132445: main (TestNodeAttributes.cpp:19) +==24485== +==24485== Open file descriptor 113: +==24485== +==24485== +==24485== Open file descriptor 110: +==24485== +==24485== +==24485== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeAttributes_valgrind.txt +==24485== +==24485== +==24485== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24485== +==24485== +==24485== +==24485== HEAP SUMMARY: +==24485== in use at exit: 618,222 bytes in 8,238 blocks +==24485== total heap usage: 47,488 allocs, 39,250 frees, 1,338,443,197 bytes allocated +==24485== +==24485== LEAK SUMMARY: +==24485== definitely lost: 0 bytes in 0 blocks +==24485== indirectly lost: 0 bytes in 0 blocks +==24485== possibly lost: 0 bytes in 0 blocks +==24485== still reachable: 24 bytes in 2 blocks +==24485== suppressed: 618,198 bytes in 8,236 blocks +==24485== Reachable blocks (those to which a pointer was found) are not shown. +==24485== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24485== +==24485== For lists of detected and suppressed errors, rerun with: -s +==24485== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestNodeBasedCellPopulationParallelMethods_valgrind.txt b/log-files/2024-09-20_21-41-09/TestNodeBasedCellPopulationParallelMethods_valgrind.txt new file mode 100644 index 000000000..b88f92495 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestNodeBasedCellPopulationParallelMethods_valgrind.txt @@ -0,0 +1,73 @@ +==26123== Memcheck, a memory error detector +==26123== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26123== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26123== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationParallelMethods -malloc_debug -malloc_dump -memory_info +==26123== Parent PID: 24036 +==26123== +==26123== +==26123== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26123== Open file descriptor 12: +==26123== at 0xF8E007D: pipe (pipe.c:29) +==26123== by 0x196AD07D: ??? +==26123== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26123== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26123== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26123== by 0x10210D38: PetscInitialize (pinit.c:924) +==26123== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26123== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26123== by 0x13F4FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26123== by 0x13824D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26123== by 0x13AF0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26123== by 0x13ADAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26123== by 0x13B441: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26123== by 0x136675: main (TestNodeBasedCellPopulationParallelMethods.cpp:19) +==26123== +==26123== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26123== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==26123== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26123== by 0xF137822: ??? +==26123== by 0xF13796F: ??? +==26123== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26123== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26123== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26123== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26123== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26123== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26123== by 0x10210D38: PetscInitialize (pinit.c:924) +==26123== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26123== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26123== by 0x13F4FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26123== by 0x13824D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26123== by 0x13AF0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26123== by 0x13ADAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26123== by 0x13B441: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26123== by 0x136675: main (TestNodeBasedCellPopulationParallelMethods.cpp:19) +==26123== +==26123== Open file descriptor 113: +==26123== +==26123== +==26123== Open file descriptor 110: +==26123== +==26123== +==26123== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationParallelMethods_valgrind.txt +==26123== +==26123== +==26123== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26123== +==26123== +==26123== +==26123== HEAP SUMMARY: +==26123== in use at exit: 618,350 bytes in 8,239 blocks +==26123== total heap usage: 60,254 allocs, 52,015 frees, 1,342,416,403 bytes allocated +==26123== +==26123== LEAK SUMMARY: +==26123== definitely lost: 0 bytes in 0 blocks +==26123== indirectly lost: 0 bytes in 0 blocks +==26123== possibly lost: 0 bytes in 0 blocks +==26123== still reachable: 56 bytes in 3 blocks +==26123== suppressed: 618,294 bytes in 8,236 blocks +==26123== Reachable blocks (those to which a pointer was found) are not shown. +==26123== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26123== +==26123== For lists of detected and suppressed errors, rerun with: -s +==26123== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt b/log-files/2024-09-20_21-41-09/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt new file mode 100644 index 000000000..69ffd0f9e --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt @@ -0,0 +1,73 @@ +==26125== Memcheck, a memory error detector +==26125== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26125== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26125== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithBuskeUpdate -malloc_debug -malloc_dump -memory_info +==26125== Parent PID: 24036 +==26125== +==26125== +==26125== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26125== Open file descriptor 12: +==26125== at 0xF83B07D: pipe (pipe.c:29) +==26125== by 0x196AD07D: ??? +==26125== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26125== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26125== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26125== by 0x10127D38: PetscInitialize (pinit.c:924) +==26125== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26125== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26125== by 0x2CC5B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26125== by 0x2C3A9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26125== by 0x2C7EB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26125== by 0x2C7DB3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26125== by 0x2C83C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26125== by 0x2C2295: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) +==26125== +==26125== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26125== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==26125== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26125== by 0xF137822: ??? +==26125== by 0xF13796F: ??? +==26125== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26125== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26125== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26125== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26125== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26125== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26125== by 0x10127D38: PetscInitialize (pinit.c:924) +==26125== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26125== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26125== by 0x2CC5B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26125== by 0x2C3A9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26125== by 0x2C7EB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26125== by 0x2C7DB3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26125== by 0x2C83C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26125== by 0x2C2295: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) +==26125== +==26125== Open file descriptor 113: +==26125== +==26125== +==26125== Open file descriptor 110: +==26125== +==26125== +==26125== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt +==26125== +==26125== +==26125== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26125== +==26125== +==26125== +==26125== HEAP SUMMARY: +==26125== in use at exit: 618,350 bytes in 8,239 blocks +==26125== total heap usage: 56,997 allocs, 48,758 frees, 1,340,209,234 bytes allocated +==26125== +==26125== LEAK SUMMARY: +==26125== definitely lost: 0 bytes in 0 blocks +==26125== indirectly lost: 0 bytes in 0 blocks +==26125== possibly lost: 0 bytes in 0 blocks +==26125== still reachable: 56 bytes in 3 blocks +==26125== suppressed: 618,294 bytes in 8,236 blocks +==26125== Reachable blocks (those to which a pointer was found) are not shown. +==26125== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26125== +==26125== For lists of detected and suppressed errors, rerun with: -s +==26125== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestNodeBasedCellPopulationWithParticles_valgrind.txt b/log-files/2024-09-20_21-41-09/TestNodeBasedCellPopulationWithParticles_valgrind.txt new file mode 100644 index 000000000..273a6188d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestNodeBasedCellPopulationWithParticles_valgrind.txt @@ -0,0 +1,73 @@ +==26128== Memcheck, a memory error detector +==26128== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26128== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26128== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithParticles -malloc_debug -malloc_dump -memory_info +==26128== Parent PID: 24036 +==26128== +==26128== +==26128== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26128== Open file descriptor 12: +==26128== at 0xF92407D: pipe (pipe.c:29) +==26128== by 0x196AD07D: ??? +==26128== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26128== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26128== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26128== by 0x10210D38: PetscInitialize (pinit.c:924) +==26128== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26128== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26128== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26128== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26128== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26128== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26128== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26128== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) +==26128== +==26128== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26128== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==26128== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26128== by 0xF137822: ??? +==26128== by 0xF13796F: ??? +==26128== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26128== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26128== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26128== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26128== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26128== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26128== by 0x10210D38: PetscInitialize (pinit.c:924) +==26128== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26128== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26128== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26128== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26128== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26128== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26128== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26128== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) +==26128== +==26128== Open file descriptor 113: +==26128== +==26128== +==26128== Open file descriptor 110: +==26128== +==26128== +==26128== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithParticles_valgrind.txt +==26128== +==26128== +==26128== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26128== +==26128== +==26128== +==26128== HEAP SUMMARY: +==26128== in use at exit: 618,350 bytes in 8,239 blocks +==26128== total heap usage: 103,599 allocs, 95,360 frees, 1,346,202,362 bytes allocated +==26128== +==26128== LEAK SUMMARY: +==26128== definitely lost: 0 bytes in 0 blocks +==26128== indirectly lost: 0 bytes in 0 blocks +==26128== possibly lost: 0 bytes in 0 blocks +==26128== still reachable: 56 bytes in 3 blocks +==26128== suppressed: 618,294 bytes in 8,236 blocks +==26128== Reachable blocks (those to which a pointer was found) are not shown. +==26128== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26128== +==26128== For lists of detected and suppressed errors, rerun with: -s +==26128== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestNodeBasedCellPopulation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestNodeBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..a40ce9c21 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestNodeBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26122== Memcheck, a memory error detector +==26122== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26122== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26122== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26122== Parent PID: 24036 +==26122== +==26122== +==26122== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26122== Open file descriptor 12: +==26122== at 0xF8CC07D: pipe (pipe.c:29) +==26122== by 0x196AD07D: ??? +==26122== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26122== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26122== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26122== by 0x10127D38: PetscInitialize (pinit.c:924) +==26122== by 0xF18B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26122== by 0xF18B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26122== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26122== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26122== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26122== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26122== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26122== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) +==26122== +==26122== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26122== at 0xF8D0A1C: __open_nocancel (open64_nocancel.c:39) +==26122== by 0xF854BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26122== by 0xF1C6822: ??? +==26122== by 0xF1C696F: ??? +==26122== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26122== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26122== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26122== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26122== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26122== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26122== by 0x10127D38: PetscInitialize (pinit.c:924) +==26122== by 0xF18B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26122== by 0xF18B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26122== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26122== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26122== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26122== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26122== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26122== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) +==26122== +==26122== Open file descriptor 113: +==26122== +==26122== +==26122== Open file descriptor 110: +==26122== +==26122== +==26122== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt +==26122== +==26122== +==26122== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26122== +==26122== +==26122== +==26122== HEAP SUMMARY: +==26122== in use at exit: 618,279 bytes in 8,235 blocks +==26122== total heap usage: 20,192,633 allocs, 20,184,398 frees, 2,562,969,201 bytes allocated +==26122== +==26122== LEAK SUMMARY: +==26122== definitely lost: 0 bytes in 0 blocks +==26122== indirectly lost: 0 bytes in 0 blocks +==26122== possibly lost: 0 bytes in 0 blocks +==26122== still reachable: 56 bytes in 3 blocks +==26122== suppressed: 618,223 bytes in 8,232 blocks +==26122== Reachable blocks (those to which a pointer was found) are not shown. +==26122== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26122== +==26122== For lists of detected and suppressed errors, rerun with: -s +==26122== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestNode_valgrind.txt b/log-files/2024-09-20_21-41-09/TestNode_valgrind.txt new file mode 100644 index 000000000..69420dc8f --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestNode_valgrind.txt @@ -0,0 +1,73 @@ +==24476== Memcheck, a memory error detector +==24476== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24476== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24476== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNode -malloc_debug -malloc_dump -memory_info +==24476== Parent PID: 24036 +==24476== +==24476== +==24476== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24476== Open file descriptor 12: +==24476== at 0x6C9607D: pipe (pipe.c:29) +==24476== by 0x100C507D: ??? +==24476== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24476== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24476== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24476== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24476== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24476== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24476== by 0x13DE14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24476== by 0x138509: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24476== by 0x13B556: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24476== by 0x13B3F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24476== by 0x13BA8D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24476== by 0x136925: main (TestNode.cpp:19) +==24476== +==24476== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24476== at 0x6C9AA1C: __open_nocancel (open64_nocancel.c:39) +==24476== by 0x6C1EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24476== by 0x6590822: ??? +==24476== by 0x659096F: ??? +==24476== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24476== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24476== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24476== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24476== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24476== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24476== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24476== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24476== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24476== by 0x13DE14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24476== by 0x138509: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24476== by 0x13B556: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24476== by 0x13B3F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24476== by 0x13BA8D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24476== by 0x136925: main (TestNode.cpp:19) +==24476== +==24476== Open file descriptor 113: +==24476== +==24476== +==24476== Open file descriptor 110: +==24476== +==24476== +==24476== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNode_valgrind.txt +==24476== +==24476== +==24476== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24476== +==24476== +==24476== +==24476== HEAP SUMMARY: +==24476== in use at exit: 618,222 bytes in 8,238 blocks +==24476== total heap usage: 47,491 allocs, 39,253 frees, 1,338,426,119 bytes allocated +==24476== +==24476== LEAK SUMMARY: +==24476== definitely lost: 0 bytes in 0 blocks +==24476== indirectly lost: 0 bytes in 0 blocks +==24476== possibly lost: 0 bytes in 0 blocks +==24476== still reachable: 24 bytes in 2 blocks +==24476== suppressed: 618,198 bytes in 8,236 blocks +==24476== Reachable blocks (those to which a pointer was found) are not shown. +==24476== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24476== +==24476== For lists of detected and suppressed errors, rerun with: -s +==24476== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestNodesOnlyMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestNodesOnlyMesh_valgrind.txt new file mode 100644 index 000000000..61ebb09b2 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24486== Memcheck, a memory error detector +==24486== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24486== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24486== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==24486== Parent PID: 24036 +==24486== +==24486== +==24486== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24486== Open file descriptor 12: +==24486== at 0x6D7D07D: pipe (pipe.c:29) +==24486== by 0x100C507D: ??? +==24486== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24486== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24486== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24486== by 0x7017D38: PetscInitialize (pinit.c:924) +==24486== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24486== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24486== by 0x143026: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24486== by 0x13D7DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24486== by 0x14093C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24486== by 0x1407DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24486== by 0x140E73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24486== by 0x13BC05: main (TestNodesOnlyMesh.cpp:19) +==24486== +==24486== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24486== at 0x6D81A1C: __open_nocancel (open64_nocancel.c:39) +==24486== by 0x6D05BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24486== by 0x6590822: ??? +==24486== by 0x659096F: ??? +==24486== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24486== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24486== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24486== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24486== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24486== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24486== by 0x7017D38: PetscInitialize (pinit.c:924) +==24486== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24486== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24486== by 0x143026: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24486== by 0x13D7DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24486== by 0x14093C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24486== by 0x1407DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24486== by 0x140E73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24486== by 0x13BC05: main (TestNodesOnlyMesh.cpp:19) +==24486== +==24486== Open file descriptor 113: +==24486== +==24486== +==24486== Open file descriptor 110: +==24486== +==24486== +==24486== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodesOnlyMesh_valgrind.txt +==24486== +==24486== +==24486== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24486== +==24486== +==24486== +==24486== HEAP SUMMARY: +==24486== in use at exit: 618,222 bytes in 8,238 blocks +==24486== total heap usage: 359,483 allocs, 351,245 frees, 1,358,353,922 bytes allocated +==24486== +==24486== LEAK SUMMARY: +==24486== definitely lost: 0 bytes in 0 blocks +==24486== indirectly lost: 0 bytes in 0 blocks +==24486== possibly lost: 0 bytes in 0 blocks +==24486== still reachable: 24 bytes in 2 blocks +==24486== suppressed: 618,198 bytes in 8,236 blocks +==24486== Reachable blocks (those to which a pointer was found) are not shown. +==24486== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24486== +==24486== For lists of detected and suppressed errors, rerun with: -s +==24486== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestNonCachedTetrahedralMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestNonCachedTetrahedralMesh_valgrind.txt new file mode 100644 index 000000000..5db0e44c9 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestNonCachedTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24487== Memcheck, a memory error detector +==24487== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24487== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24487== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNonCachedTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==24487== Parent PID: 24036 +==24487== +==24487== +==24487== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24487== Open file descriptor 12: +==24487== at 0x6C9607D: pipe (pipe.c:29) +==24487== by 0x100C507D: ??? +==24487== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24487== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24487== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24487== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24487== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24487== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24487== by 0x121954: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24487== by 0x11CD9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24487== by 0x11F7E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24487== by 0x11F682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24487== by 0x11FD19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24487== by 0x11B1C5: main (TestNonCachedTetrahedralMesh.cpp:19) +==24487== +==24487== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24487== at 0x6C9AA1C: __open_nocancel (open64_nocancel.c:39) +==24487== by 0x6C1EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24487== by 0x6590822: ??? +==24487== by 0x659096F: ??? +==24487== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24487== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24487== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24487== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24487== by 0x82A0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24487== by 0x8239D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24487== by 0x6F30D38: PetscInitialize (pinit.c:924) +==24487== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24487== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24487== by 0x121954: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24487== by 0x11CD9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24487== by 0x11F7E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24487== by 0x11F682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24487== by 0x11FD19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24487== by 0x11B1C5: main (TestNonCachedTetrahedralMesh.cpp:19) +==24487== +==24487== Open file descriptor 113: +==24487== +==24487== +==24487== Open file descriptor 110: +==24487== +==24487== +==24487== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonCachedTetrahedralMesh_valgrind.txt +==24487== +==24487== +==24487== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24487== +==24487== +==24487== +==24487== HEAP SUMMARY: +==24487== in use at exit: 618,151 bytes in 8,234 blocks +==24487== total heap usage: 16,013,255 allocs, 16,005,021 frees, 3,441,282,835 bytes allocated +==24487== +==24487== LEAK SUMMARY: +==24487== definitely lost: 0 bytes in 0 blocks +==24487== indirectly lost: 0 bytes in 0 blocks +==24487== possibly lost: 0 bytes in 0 blocks +==24487== still reachable: 24 bytes in 2 blocks +==24487== suppressed: 618,127 bytes in 8,232 blocks +==24487== Reachable blocks (those to which a pointer was found) are not shown. +==24487== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24487== +==24487== For lists of detected and suppressed errors, rerun with: -s +==24487== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestNonlinearElasticityTools_valgrind.txt b/log-files/2024-09-20_21-41-09/TestNonlinearElasticityTools_valgrind.txt new file mode 100644 index 000000000..0fa890627 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestNonlinearElasticityTools_valgrind.txt @@ -0,0 +1,73 @@ +==25330== Memcheck, a memory error detector +==25330== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25330== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25330== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestNonlinearElasticityTools -malloc_debug -malloc_dump -memory_info +==25330== Parent PID: 24036 +==25330== +==25330== +==25330== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25330== Open file descriptor 12: +==25330== at 0x6DD407D: pipe (pipe.c:29) +==25330== by 0x106D907D: ??? +==25330== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25330== by 0x88A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25330== by 0x883FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25330== by 0x740BD38: PetscInitialize (pinit.c:924) +==25330== by 0x66D71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25330== by 0x66D7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25330== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25330== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25330== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25330== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25330== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25330== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) +==25330== +==25330== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25330== at 0x6DD8A1C: __open_nocancel (open64_nocancel.c:39) +==25330== by 0x6D5CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25330== by 0x6712822: ??? +==25330== by 0x671296F: ??? +==25330== by 0xC0846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25330== by 0xC084938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25330== by 0xC03A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25330== by 0xBFDF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25330== by 0x88A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25330== by 0x883FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25330== by 0x740BD38: PetscInitialize (pinit.c:924) +==25330== by 0x66D71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25330== by 0x66D7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25330== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25330== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25330== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25330== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25330== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25330== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) +==25330== +==25330== Open file descriptor 113: +==25330== +==25330== +==25330== Open file descriptor 110: +==25330== +==25330== +==25330== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonlinearElasticityTools_valgrind.txt +==25330== +==25330== +==25330== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25330== +==25330== +==25330== +==25330== HEAP SUMMARY: +==25330== in use at exit: 618,270 bytes in 8,238 blocks +==25330== total heap usage: 57,773 allocs, 49,535 frees, 1,339,460,899 bytes allocated +==25330== +==25330== LEAK SUMMARY: +==25330== definitely lost: 0 bytes in 0 blocks +==25330== indirectly lost: 0 bytes in 0 blocks +==25330== possibly lost: 0 bytes in 0 blocks +==25330== still reachable: 24 bytes in 2 blocks +==25330== suppressed: 618,246 bytes in 8,236 blocks +==25330== Reachable blocks (those to which a pointer was found) are not shown. +==25330== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25330== +==25330== For lists of detected and suppressed errors, rerun with: -s +==25330== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestNonlinearSolvers_valgrind.txt b/log-files/2024-09-20_21-41-09/TestNonlinearSolvers_valgrind.txt new file mode 100644 index 000000000..b1fd0c77b --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestNonlinearSolvers_valgrind.txt @@ -0,0 +1,73 @@ +==24346== Memcheck, a memory error detector +==24346== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24346== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24346== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestNonlinearSolvers -malloc_debug -malloc_dump -memory_info +==24346== Parent PID: 24036 +==24346== +==24346== +==24346== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24346== Open file descriptor 12: +==24346== at 0x60C107D: pipe (pipe.c:29) +==24346== by 0xAF3907D: ??? +==24346== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24346== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24346== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24346== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24346== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24346== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24346== by 0x1143C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24346== by 0x10FB69: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24346== by 0x1123C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24346== by 0x112266: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24346== by 0x1128FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24346== by 0x10D915: main (TestNonlinearSolvers.cpp:19) +==24346== +==24346== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24346== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24346== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24346== by 0x5D42822: ??? +==24346== by 0x5D4296F: ??? +==24346== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24346== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24346== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24346== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24346== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24346== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24346== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24346== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24346== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24346== by 0x1143C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24346== by 0x10FB69: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24346== by 0x1123C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24346== by 0x112266: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24346== by 0x1128FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24346== by 0x10D915: main (TestNonlinearSolvers.cpp:19) +==24346== +==24346== Open file descriptor 113: +==24346== +==24346== +==24346== Open file descriptor 110: +==24346== +==24346== +==24346== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonlinearSolvers_valgrind.txt +==24346== +==24346== +==24346== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24346== +==24346== +==24346== +==24346== HEAP SUMMARY: +==24346== in use at exit: 617,854 bytes in 8,238 blocks +==24346== total heap usage: 101,426 allocs, 93,188 frees, 1,348,557,315 bytes allocated +==24346== +==24346== LEAK SUMMARY: +==24346== definitely lost: 0 bytes in 0 blocks +==24346== indirectly lost: 0 bytes in 0 blocks +==24346== possibly lost: 0 bytes in 0 blocks +==24346== still reachable: 24 bytes in 2 blocks +==24346== suppressed: 617,830 bytes in 8,236 blocks +==24346== Reachable blocks (those to which a pointer was found) are not shown. +==24346== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24346== +==24346== For lists of detected and suppressed errors, rerun with: -s +==24346== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestNormallyDistributedTargetAreaModifier_valgrind.txt b/log-files/2024-09-20_21-41-09/TestNormallyDistributedTargetAreaModifier_valgrind.txt new file mode 100644 index 000000000..47ddfdf60 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestNormallyDistributedTargetAreaModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26481== Memcheck, a memory error detector +==26481== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26481== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26481== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNormallyDistributedTargetAreaModifier -malloc_debug -malloc_dump -memory_info +==26481== Parent PID: 24036 +==26481== +==26481== +==26481== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26481== Open file descriptor 12: +==26481== at 0x10CF207D: pipe (pipe.c:29) +==26481== by 0x196AD07D: ??? +==26481== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26481== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26481== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26481== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26481== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26481== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26481== by 0x139D83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26481== by 0x1324FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26481== by 0x1357FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26481== by 0x13569C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26481== by 0x135D33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26481== by 0x130925: main (TestNormallyDistributedTargetAreaModifier.cpp:19) +==26481== +==26481== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26481== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26481== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26481== by 0xF137822: ??? +==26481== by 0xF13796F: ??? +==26481== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26481== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26481== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26481== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26481== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26481== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26481== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26481== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26481== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26481== by 0x139D83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26481== by 0x1324FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26481== by 0x1357FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26481== by 0x13569C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26481== by 0x135D33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26481== by 0x130925: main (TestNormallyDistributedTargetAreaModifier.cpp:19) +==26481== +==26481== Open file descriptor 113: +==26481== +==26481== +==26481== Open file descriptor 110: +==26481== +==26481== +==26481== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNormallyDistributedTargetAreaModifier_valgrind.txt +==26481== +==26481== +==26481== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26481== +==26481== +==26481== +==26481== HEAP SUMMARY: +==26481== in use at exit: 618,350 bytes in 8,239 blocks +==26481== total heap usage: 581,795 allocs, 573,556 frees, 1,435,425,236 bytes allocated +==26481== +==26481== LEAK SUMMARY: +==26481== definitely lost: 0 bytes in 0 blocks +==26481== indirectly lost: 0 bytes in 0 blocks +==26481== possibly lost: 0 bytes in 0 blocks +==26481== still reachable: 56 bytes in 3 blocks +==26481== suppressed: 618,294 bytes in 8,236 blocks +==26481== Reachable blocks (those to which a pointer was found) are not shown. +==26481== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26481== +==26481== For lists of detected and suppressed errors, rerun with: -s +==26481== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestNumericFileComparison_valgrind.txt b/log-files/2024-09-20_21-41-09/TestNumericFileComparison_valgrind.txt new file mode 100644 index 000000000..cd8e5940b --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestNumericFileComparison_valgrind.txt @@ -0,0 +1,73 @@ +==24186== Memcheck, a memory error detector +==24186== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24186== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24186== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestNumericFileComparison -malloc_debug -malloc_dump -memory_info +==24186== Parent PID: 24036 +==24186== +==24186== +==24186== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24186== Open file descriptor 12: +==24186== at 0x4CB207D: pipe (pipe.c:29) +==24186== by 0xAEA507D: ??? +==24186== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24186== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24186== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24186== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24186== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24186== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24186== by 0x115A5C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24186== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24186== by 0x112A1A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24186== by 0x112915: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24186== by 0x112F29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24186== by 0x10EA95: main (TestNumericFileComparison.cpp:18) +==24186== +==24186== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24186== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24186== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24186== by 0x4935822: ??? +==24186== by 0x493596F: ??? +==24186== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24186== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24186== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24186== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24186== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24186== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24186== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24186== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24186== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24186== by 0x115A5C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24186== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24186== by 0x112A1A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24186== by 0x112915: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24186== by 0x112F29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24186== by 0x10EA95: main (TestNumericFileComparison.cpp:18) +==24186== +==24186== Open file descriptor 113: +==24186== +==24186== +==24186== Open file descriptor 110: +==24186== +==24186== +==24186== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNumericFileComparison_valgrind.txt +==24186== +==24186== +==24186== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24186== +==24186== +==24186== +==24186== HEAP SUMMARY: +==24186== in use at exit: 617,838 bytes in 8,238 blocks +==24186== total heap usage: 45,725 allocs, 37,487 frees, 1,338,465,749 bytes allocated +==24186== +==24186== LEAK SUMMARY: +==24186== definitely lost: 0 bytes in 0 blocks +==24186== indirectly lost: 0 bytes in 0 blocks +==24186== possibly lost: 0 bytes in 0 blocks +==24186== still reachable: 24 bytes in 2 blocks +==24186== suppressed: 617,814 bytes in 8,236 blocks +==24186== Reachable blocks (those to which a pointer was found) are not shown. +==24186== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24186== +==24186== For lists of detected and suppressed errors, rerun with: -s +==24186== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestNumericalMethods_valgrind.txt b/log-files/2024-09-20_21-41-09/TestNumericalMethods_valgrind.txt new file mode 100644 index 000000000..d778cf7b5 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestNumericalMethods_valgrind.txt @@ -0,0 +1,73 @@ +==26413== Memcheck, a memory error detector +==26413== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26413== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26413== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNumericalMethods -malloc_debug -malloc_dump -memory_info +==26413== Parent PID: 24036 +==26413== +==26413== +==26413== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26413== Open file descriptor 12: +==26413== at 0xF8E007D: pipe (pipe.c:29) +==26413== by 0x196AD07D: ??? +==26413== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26413== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26413== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26413== by 0x10210D38: PetscInitialize (pinit.c:924) +==26413== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26413== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26413== by 0x13A648: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26413== by 0x13504D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26413== by 0x137DD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26413== by 0x137C74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26413== by 0x13830B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26413== by 0x133475: main (TestNumericalMethods.cpp:19) +==26413== +==26413== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26413== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==26413== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26413== by 0xF137822: ??? +==26413== by 0xF13796F: ??? +==26413== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26413== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26413== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26413== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26413== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26413== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26413== by 0x10210D38: PetscInitialize (pinit.c:924) +==26413== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26413== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26413== by 0x13A648: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26413== by 0x13504D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26413== by 0x137DD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26413== by 0x137C74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26413== by 0x13830B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26413== by 0x133475: main (TestNumericalMethods.cpp:19) +==26413== +==26413== Open file descriptor 113: +==26413== +==26413== +==26413== Open file descriptor 110: +==26413== +==26413== +==26413== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNumericalMethods_valgrind.txt +==26413== +==26413== +==26413== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26413== +==26413== +==26413== +==26413== HEAP SUMMARY: +==26413== in use at exit: 618,350 bytes in 8,239 blocks +==26413== total heap usage: 69,189 allocs, 60,950 frees, 1,341,833,483 bytes allocated +==26413== +==26413== LEAK SUMMARY: +==26413== definitely lost: 0 bytes in 0 blocks +==26413== indirectly lost: 0 bytes in 0 blocks +==26413== possibly lost: 0 bytes in 0 blocks +==26413== still reachable: 56 bytes in 3 blocks +==26413== suppressed: 618,294 bytes in 8,236 blocks +==26413== Reachable blocks (those to which a pointer was found) are not shown. +==26413== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26413== +==26413== For lists of detected and suppressed errors, rerun with: -s +==26413== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestObjectCommunicator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestObjectCommunicator_valgrind.txt new file mode 100644 index 000000000..0e5a92f46 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestObjectCommunicator_valgrind.txt @@ -0,0 +1,73 @@ +==24187== Memcheck, a memory error detector +==24187== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24187== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24187== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestObjectCommunicator -malloc_debug -malloc_dump -memory_info +==24187== Parent PID: 24036 +==24187== +==24187== +==24187== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24187== Open file descriptor 12: +==24187== at 0x61AB07D: pipe (pipe.c:29) +==24187== by 0xAEA507D: ??? +==24187== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24187== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24187== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24187== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24187== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24187== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24187== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24187== by 0x11C051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24187== by 0x11F5CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24187== by 0x11F46C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24187== by 0x11FB03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24187== by 0x11A325: main (TestObjectCommunicator.cpp:19) +==24187== +==24187== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24187== at 0x61AFA1C: __open_nocancel (open64_nocancel.c:39) +==24187== by 0x6133BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24187== by 0x4935822: ??? +==24187== by 0x493596F: ??? +==24187== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24187== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24187== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24187== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24187== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24187== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24187== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24187== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24187== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24187== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24187== by 0x11C051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24187== by 0x11F5CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24187== by 0x11F46C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24187== by 0x11FB03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24187== by 0x11A325: main (TestObjectCommunicator.cpp:19) +==24187== +==24187== Open file descriptor 113: +==24187== +==24187== +==24187== Open file descriptor 110: +==24187== +==24187== +==24187== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestObjectCommunicator_valgrind.txt +==24187== +==24187== +==24187== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24187== +==24187== +==24187== +==24187== HEAP SUMMARY: +==24187== in use at exit: 617,838 bytes in 8,238 blocks +==24187== total heap usage: 44,949 allocs, 36,711 frees, 1,338,161,519 bytes allocated +==24187== +==24187== LEAK SUMMARY: +==24187== definitely lost: 0 bytes in 0 blocks +==24187== indirectly lost: 0 bytes in 0 blocks +==24187== possibly lost: 0 bytes in 0 blocks +==24187== still reachable: 24 bytes in 2 blocks +==24187== suppressed: 617,814 bytes in 8,236 blocks +==24187== Reachable blocks (those to which a pointer was found) are not shown. +==24187== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24187== +==24187== For lists of detected and suppressed errors, rerun with: -s +==24187== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestObsoleteBoxCollection_valgrind.txt b/log-files/2024-09-20_21-41-09/TestObsoleteBoxCollection_valgrind.txt new file mode 100644 index 000000000..87526a127 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestObsoleteBoxCollection_valgrind.txt @@ -0,0 +1,73 @@ +==24655== Memcheck, a memory error detector +==24655== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24655== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24655== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestObsoleteBoxCollection -malloc_debug -malloc_dump -memory_info +==24655== Parent PID: 24036 +==24655== +==24655== +==24655== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24655== Open file descriptor 12: +==24655== at 0x6D3B07D: pipe (pipe.c:29) +==24655== by 0x100C507D: ??? +==24655== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24655== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24655== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24655== by 0x7017D38: PetscInitialize (pinit.c:924) +==24655== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24655== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24655== by 0x153352: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24655== by 0x14DF8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24655== by 0x150FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24655== by 0x150E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24655== by 0x1514D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24655== by 0x14C3B5: main (TestObsoleteBoxCollection.cpp:19) +==24655== +==24655== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24655== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24655== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24655== by 0x6590822: ??? +==24655== by 0x659096F: ??? +==24655== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24655== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24655== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24655== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24655== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24655== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24655== by 0x7017D38: PetscInitialize (pinit.c:924) +==24655== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24655== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24655== by 0x153352: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24655== by 0x14DF8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24655== by 0x150FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24655== by 0x150E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24655== by 0x1514D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24655== by 0x14C3B5: main (TestObsoleteBoxCollection.cpp:19) +==24655== +==24655== Open file descriptor 113: +==24655== +==24655== +==24655== Open file descriptor 110: +==24655== +==24655== +==24655== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestObsoleteBoxCollection_valgrind.txt +==24655== +==24655== +==24655== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24655== +==24655== +==24655== +==24655== HEAP SUMMARY: +==24655== in use at exit: 618,222 bytes in 8,238 blocks +==24655== total heap usage: 276,945 allocs, 268,707 frees, 1,447,217,602 bytes allocated +==24655== +==24655== LEAK SUMMARY: +==24655== definitely lost: 0 bytes in 0 blocks +==24655== indirectly lost: 0 bytes in 0 blocks +==24655== possibly lost: 0 bytes in 0 blocks +==24655== still reachable: 24 bytes in 2 blocks +==24655== suppressed: 618,198 bytes in 8,236 blocks +==24655== Reachable blocks (those to which a pointer was found) are not shown. +==24655== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24655== +==24655== For lists of detected and suppressed errors, rerun with: -s +==24655== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt new file mode 100644 index 000000000..3a125d4b5 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40424== Memcheck, a memory error detector +==40424== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40424== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40424== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info +==40424== Parent PID: 24036 +==40424== +==40424== +==40424== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40424== Open file descriptor 12: +==40424== at 0x10B9907D: pipe (pipe.c:29) +==40424== by 0x1B36D07D: ??? +==40424== by 0x155114CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40424== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40424== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40424== by 0xF131D38: PetscInitialize (pinit.c:924) +==40424== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40424== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40424== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40424== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40424== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40424== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40424== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40424== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) +==40424== +==40424== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40424== at 0x10B9DA1C: __open_nocancel (open64_nocancel.c:39) +==40424== by 0x10B21BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40424== by 0xEFDE822: ??? +==40424== by 0xEFDE96F: ??? +==40424== by 0x155B66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40424== by 0x155B6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40424== by 0x1556C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40424== by 0x155112DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40424== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40424== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40424== by 0xF131D38: PetscInitialize (pinit.c:924) +==40424== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40424== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40424== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40424== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40424== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40424== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40424== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40424== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) +==40424== +==40424== Open file descriptor 113: +==40424== +==40424== +==40424== Open file descriptor 110: +==40424== +==40424== +==40424== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt +==40424== +==40424== +==40424== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40424== +==40424== +==40424== +==40424== HEAP SUMMARY: +==40424== in use at exit: 618,430 bytes in 8,240 blocks +==40424== total heap usage: 862,012 allocs, 853,772 frees, 1,460,910,346 bytes allocated +==40424== +==40424== LEAK SUMMARY: +==40424== definitely lost: 0 bytes in 0 blocks +==40424== indirectly lost: 0 bytes in 0 blocks +==40424== possibly lost: 0 bytes in 0 blocks +==40424== still reachable: 120 bytes in 4 blocks +==40424== suppressed: 618,310 bytes in 8,236 blocks +==40424== Reachable blocks (those to which a pointer was found) are not shown. +==40424== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40424== +==40424== For lists of detected and suppressed errors, rerun with: -s +==40424== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestOdeBasedCellCycleModels_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOdeBasedCellCycleModels_valgrind.txt new file mode 100644 index 000000000..cff8518f2 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOdeBasedCellCycleModels_valgrind.txt @@ -0,0 +1,73 @@ +==25457== Memcheck, a memory error detector +==25457== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25457== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25457== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeBasedCellCycleModels -malloc_debug -malloc_dump -memory_info +==25457== Parent PID: 24036 +==25457== +==25457== +==25457== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25457== Open file descriptor 12: +==25457== at 0xEF9407D: pipe (pipe.c:29) +==25457== by 0x196AC07D: ??? +==25457== by 0x13C514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25457== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25457== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25457== by 0xD871D38: PetscInitialize (pinit.c:924) +==25457== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25457== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25457== by 0x1361D7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25457== by 0x12EF6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25457== by 0x131C2A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25457== by 0x131ACA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25457== by 0x132161: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25457== by 0x12B8A5: main (TestOdeBasedCellCycleModels.cpp:19) +==25457== +==25457== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25457== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25457== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25457== by 0xD71E822: ??? +==25457== by 0xD71E96F: ??? +==25457== by 0x13CF66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25457== by 0x13CF6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25457== by 0x13CAC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25457== by 0x13C512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25457== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25457== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25457== by 0xD871D38: PetscInitialize (pinit.c:924) +==25457== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25457== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25457== by 0x1361D7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25457== by 0x12EF6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25457== by 0x131C2A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25457== by 0x131ACA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25457== by 0x132161: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25457== by 0x12B8A5: main (TestOdeBasedCellCycleModels.cpp:19) +==25457== +==25457== Open file descriptor 113: +==25457== +==25457== +==25457== Open file descriptor 110: +==25457== +==25457== +==25457== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModels_valgrind.txt +==25457== +==25457== +==25457== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25457== +==25457== +==25457== +==25457== HEAP SUMMARY: +==25457== in use at exit: 618,295 bytes in 8,236 blocks +==25457== total heap usage: 4,179,303 allocs, 4,171,067 frees, 1,770,075,191 bytes allocated +==25457== +==25457== LEAK SUMMARY: +==25457== definitely lost: 0 bytes in 0 blocks +==25457== indirectly lost: 0 bytes in 0 blocks +==25457== possibly lost: 0 bytes in 0 blocks +==25457== still reachable: 72 bytes in 4 blocks +==25457== suppressed: 618,223 bytes in 8,232 blocks +==25457== Reachable blocks (those to which a pointer was found) are not shown. +==25457== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25457== +==25457== For lists of detected and suppressed errors, rerun with: -s +==25457== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestOdeBasedSrnModels_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOdeBasedSrnModels_valgrind.txt new file mode 100644 index 000000000..57e57430c --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOdeBasedSrnModels_valgrind.txt @@ -0,0 +1,73 @@ +==25467== Memcheck, a memory error detector +==25467== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25467== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25467== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeBasedSrnModels -malloc_debug -malloc_dump -memory_info +==25467== Parent PID: 24036 +==25467== +==25467== +==25467== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25467== Open file descriptor 12: +==25467== at 0xED5007D: pipe (pipe.c:29) +==25467== by 0x196AC07D: ??? +==25467== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25467== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25467== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25467== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25467== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25467== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25467== by 0x12E3B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25467== by 0x1272FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25467== by 0x129E8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25467== by 0x129D2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25467== by 0x12A3C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25467== by 0x125725: main (TestOdeBasedSrnModels.cpp:19) +==25467== +==25467== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25467== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25467== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25467== by 0xD4DA822: ??? +==25467== by 0xD4DA96F: ??? +==25467== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25467== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25467== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25467== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25467== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25467== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25467== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25467== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25467== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25467== by 0x12E3B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25467== by 0x1272FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25467== by 0x129E8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25467== by 0x129D2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25467== by 0x12A3C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25467== by 0x125725: main (TestOdeBasedSrnModels.cpp:19) +==25467== +==25467== Open file descriptor 113: +==25467== +==25467== +==25467== Open file descriptor 110: +==25467== +==25467== +==25467== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedSrnModels_valgrind.txt +==25467== +==25467== +==25467== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25467== +==25467== +==25467== +==25467== HEAP SUMMARY: +==25467== in use at exit: 618,366 bytes in 8,240 blocks +==25467== total heap usage: 57,244 allocs, 49,004 frees, 1,339,479,325 bytes allocated +==25467== +==25467== LEAK SUMMARY: +==25467== definitely lost: 0 bytes in 0 blocks +==25467== indirectly lost: 0 bytes in 0 blocks +==25467== possibly lost: 0 bytes in 0 blocks +==25467== still reachable: 72 bytes in 4 blocks +==25467== suppressed: 618,294 bytes in 8,236 blocks +==25467== Reachable blocks (those to which a pointer was found) are not shown. +==25467== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25467== +==25467== For lists of detected and suppressed errors, rerun with: -s +==25467== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestOdeLinearSystemSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOdeLinearSystemSolver_valgrind.txt new file mode 100644 index 000000000..56f27bcb9 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOdeLinearSystemSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25713== Memcheck, a memory error detector +==25713== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25713== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25713== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeLinearSystemSolver -malloc_debug -malloc_dump -memory_info +==25713== Parent PID: 24036 +==25713== +==25713== +==25713== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25713== Open file descriptor 12: +==25713== at 0xEC6607D: pipe (pipe.c:29) +==25713== by 0x196AD07D: ??? +==25713== by 0x14C8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25713== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25713== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25713== by 0xD659D38: PetscInitialize (pinit.c:924) +==25713== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25713== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25713== by 0x112010: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25713== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25713== by 0x1100A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25713== by 0x10FFA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25713== by 0x1105B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25713== by 0x10C555: main (TestOdeLinearSystemSolver.cpp:18) +==25713== +==25713== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25713== at 0xEC6AA1C: __open_nocancel (open64_nocancel.c:39) +==25713== by 0xEBEEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25713== by 0xE8E9822: ??? +==25713== by 0xE8E996F: ??? +==25713== by 0x14D306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25713== by 0x14D30938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25713== by 0x14CE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25713== by 0x14C8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25713== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25713== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25713== by 0xD659D38: PetscInitialize (pinit.c:924) +==25713== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25713== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25713== by 0x112010: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25713== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25713== by 0x1100A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25713== by 0x10FFA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25713== by 0x1105B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25713== by 0x10C555: main (TestOdeLinearSystemSolver.cpp:18) +==25713== +==25713== Open file descriptor 113: +==25713== +==25713== +==25713== Open file descriptor 110: +==25713== +==25713== +==25713== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeLinearSystemSolver_valgrind.txt +==25713== +==25713== +==25713== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25713== +==25713== +==25713== +==25713== HEAP SUMMARY: +==25713== in use at exit: 618,318 bytes in 8,238 blocks +==25713== total heap usage: 55,510 allocs, 47,272 frees, 1,339,626,234 bytes allocated +==25713== +==25713== LEAK SUMMARY: +==25713== definitely lost: 0 bytes in 0 blocks +==25713== indirectly lost: 0 bytes in 0 blocks +==25713== possibly lost: 0 bytes in 0 blocks +==25713== still reachable: 24 bytes in 2 blocks +==25713== suppressed: 618,294 bytes in 8,236 blocks +==25713== Reachable blocks (those to which a pointer was found) are not shown. +==25713== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25713== +==25713== For lists of detected and suppressed errors, rerun with: -s +==25713== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestOffLatticeCryptProjectionSimulation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOffLatticeCryptProjectionSimulation_valgrind.txt new file mode 100644 index 000000000..446a6ffb5 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOffLatticeCryptProjectionSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==40616== Memcheck, a memory error detector +==40616== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40616== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40616== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOffLatticeCryptProjectionSimulation -malloc_debug -malloc_dump -memory_info +==40616== Parent PID: 24036 +==40616== +==40616== +==40616== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40616== Open file descriptor 12: +==40616== at 0x1265707D: pipe (pipe.c:29) +==40616== by 0x1B36D07D: ??? +==40616== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40616== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40616== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40616== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40616== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40616== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40616== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40616== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40616== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40616== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40616== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40616== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) +==40616== +==40616== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40616== at 0x1265BA1C: __open_nocancel (open64_nocancel.c:39) +==40616== by 0x125DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40616== by 0x11D75822: ??? +==40616== by 0x11D7596F: ??? +==40616== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40616== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40616== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40616== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40616== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40616== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40616== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40616== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40616== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40616== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40616== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40616== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40616== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40616== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40616== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) +==40616== +==40616== Open file descriptor 113: +==40616== +==40616== +==40616== Open file descriptor 110: +==40616== +==40616== +==40616== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeCryptProjectionSimulation_valgrind.txt +==40616== +==40616== +==40616== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40616== +==40616== +==40616== +==40616== HEAP SUMMARY: +==40616== in use at exit: 618,366 bytes in 8,239 blocks +==40616== total heap usage: 1,343,531 allocs, 1,335,292 frees, 1,452,945,156 bytes allocated +==40616== +==40616== LEAK SUMMARY: +==40616== definitely lost: 0 bytes in 0 blocks +==40616== indirectly lost: 0 bytes in 0 blocks +==40616== possibly lost: 0 bytes in 0 blocks +==40616== still reachable: 56 bytes in 3 blocks +==40616== suppressed: 618,310 bytes in 8,236 blocks +==40616== Reachable blocks (those to which a pointer was found) are not shown. +==40616== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40616== +==40616== For lists of detected and suppressed errors, rerun with: -s +==40616== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestOffLatticeRandomFieldGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOffLatticeRandomFieldGenerator_valgrind.txt new file mode 100644 index 000000000..983594809 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOffLatticeRandomFieldGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24856== Memcheck, a memory error detector +==24856== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24856== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24856== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestOffLatticeRandomFieldGenerator -malloc_debug -malloc_dump -memory_info +==24856== Parent PID: 24036 +==24856== +==24856== +==24856== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24856== Open file descriptor 12: +==24856== at 0x7E5307D: pipe (pipe.c:29) +==24856== by 0x100C307D: ??? +==24856== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24856== by 0x7AA2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24856== by 0x7A3BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24856== by 0x670FD38: PetscInitialize (pinit.c:924) +==24856== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24856== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24856== by 0x1256B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24856== by 0x121073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24856== by 0x123452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24856== by 0x12334D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24856== by 0x123961: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24856== by 0x11F875: main (TestOffLatticeRandomFieldGenerator.cpp:18) +==24856== +==24856== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24856== at 0x7E57A1C: __open_nocancel (open64_nocancel.c:39) +==24856== by 0x7DDBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24856== by 0x799F822: ??? +==24856== by 0x799F96F: ??? +==24856== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24856== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24856== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24856== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24856== by 0x7AA2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24856== by 0x7A3BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24856== by 0x670FD38: PetscInitialize (pinit.c:924) +==24856== by 0x65E41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24856== by 0x65E4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24856== by 0x1256B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24856== by 0x121073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24856== by 0x123452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24856== by 0x12334D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24856== by 0x123961: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24856== by 0x11F875: main (TestOffLatticeRandomFieldGenerator.cpp:18) +==24856== +==24856== Open file descriptor 113: +==24856== +==24856== +==24856== Open file descriptor 110: +==24856== +==24856== +==24856== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeRandomFieldGenerator_valgrind.txt +==24856== +==24856== +==24856== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24856== +==24856== +==24856== +==24856== HEAP SUMMARY: +==24856== in use at exit: 620,774 bytes in 8,239 blocks +==24856== total heap usage: 515,646 allocs, 507,407 frees, 1,362,757,157 bytes allocated +==24856== +==24856== LEAK SUMMARY: +==24856== definitely lost: 0 bytes in 0 blocks +==24856== indirectly lost: 0 bytes in 0 blocks +==24856== possibly lost: 0 bytes in 0 blocks +==24856== still reachable: 2,576 bytes in 3 blocks +==24856== suppressed: 618,198 bytes in 8,236 blocks +==24856== Reachable blocks (those to which a pointer was found) are not shown. +==24856== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24856== +==24856== For lists of detected and suppressed errors, rerun with: -s +==24856== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestOffLatticeSimulation3d_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOffLatticeSimulation3d_valgrind.txt new file mode 100644 index 000000000..c3f54ce2c --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOffLatticeSimulation3d_valgrind.txt @@ -0,0 +1,73 @@ +==26529== Memcheck, a memory error detector +==26529== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26529== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26529== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info +==26529== Parent PID: 24036 +==26529== +==26529== +==26529== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26529== Open file descriptor 12: +==26529== at 0x10DD907D: pipe (pipe.c:29) +==26529== by 0x196AD07D: ??? +==26529== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26529== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26529== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26529== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26529== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26529== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26529== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26529== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26529== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26529== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26529== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26529== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) +==26529== +==26529== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26529== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==26529== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26529== by 0xF137822: ??? +==26529== by 0xF13796F: ??? +==26529== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26529== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26529== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26529== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26529== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26529== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26529== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26529== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26529== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26529== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26529== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26529== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26529== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26529== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26529== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) +==26529== +==26529== Open file descriptor 113: +==26529== +==26529== +==26529== Open file descriptor 110: +==26529== +==26529== +==26529== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt +==26529== +==26529== +==26529== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26529== +==26529== +==26529== +==26529== HEAP SUMMARY: +==26529== in use at exit: 618,350 bytes in 8,239 blocks +==26529== total heap usage: 853,792 allocs, 845,553 frees, 1,503,649,753 bytes allocated +==26529== +==26529== LEAK SUMMARY: +==26529== definitely lost: 0 bytes in 0 blocks +==26529== indirectly lost: 0 bytes in 0 blocks +==26529== possibly lost: 0 bytes in 0 blocks +==26529== still reachable: 56 bytes in 3 blocks +==26529== suppressed: 618,294 bytes in 8,236 blocks +==26529== Reachable blocks (those to which a pointer was found) are not shown. +==26529== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26529== +==26529== For lists of detected and suppressed errors, rerun with: -s +==26529== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestOffLatticeSimulationWithBuskeForces_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOffLatticeSimulationWithBuskeForces_valgrind.txt new file mode 100644 index 000000000..0a335b921 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOffLatticeSimulationWithBuskeForces_valgrind.txt @@ -0,0 +1,73 @@ +==26646== Memcheck, a memory error detector +==26646== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26646== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26646== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithBuskeForces -malloc_debug -malloc_dump -memory_info +==26646== Parent PID: 24036 +==26646== +==26646== +==26646== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26646== Open file descriptor 12: +==26646== at 0xF8E007D: pipe (pipe.c:29) +==26646== by 0x196AD07D: ??? +==26646== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26646== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26646== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26646== by 0x10210D38: PetscInitialize (pinit.c:924) +==26646== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26646== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26646== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26646== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26646== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26646== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26646== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26646== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) +==26646== +==26646== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26646== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==26646== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26646== by 0xF137822: ??? +==26646== by 0xF13796F: ??? +==26646== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26646== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26646== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26646== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26646== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26646== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26646== by 0x10210D38: PetscInitialize (pinit.c:924) +==26646== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26646== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26646== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26646== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26646== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26646== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26646== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26646== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) +==26646== +==26646== Open file descriptor 113: +==26646== +==26646== +==26646== Open file descriptor 110: +==26646== +==26646== +==26646== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithBuskeForces_valgrind.txt +==26646== +==26646== +==26646== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26646== +==26646== +==26646== +==26646== HEAP SUMMARY: +==26646== in use at exit: 618,279 bytes in 8,235 blocks +==26646== total heap usage: 3,593,545 allocs, 3,585,310 frees, 4,478,246,056 bytes allocated +==26646== +==26646== LEAK SUMMARY: +==26646== definitely lost: 0 bytes in 0 blocks +==26646== indirectly lost: 0 bytes in 0 blocks +==26646== possibly lost: 0 bytes in 0 blocks +==26646== still reachable: 56 bytes in 3 blocks +==26646== suppressed: 618,223 bytes in 8,232 blocks +==26646== Reachable blocks (those to which a pointer was found) are not shown. +==26646== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26646== +==26646== For lists of detected and suppressed errors, rerun with: -s +==26646== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt new file mode 100644 index 000000000..cc767d3d3 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt @@ -0,0 +1,73 @@ +==26828== Memcheck, a memory error detector +==26828== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26828== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26828== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info +==26828== Parent PID: 24036 +==26828== +==26828== +==26828== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26828== Open file descriptor 12: +==26828== at 0xF8E007D: pipe (pipe.c:29) +==26828== by 0x196AD07D: ??? +==26828== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26828== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26828== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26828== by 0x10210D38: PetscInitialize (pinit.c:924) +==26828== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26828== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26828== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26828== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26828== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26828== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26828== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26828== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) +==26828== +==26828== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26828== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==26828== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26828== by 0xF137822: ??? +==26828== by 0xF13796F: ??? +==26828== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26828== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26828== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26828== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26828== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26828== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26828== by 0x10210D38: PetscInitialize (pinit.c:924) +==26828== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26828== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26828== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26828== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26828== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26828== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26828== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26828== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) +==26828== +==26828== Open file descriptor 113: +==26828== +==26828== +==26828== Open file descriptor 110: +==26828== +==26828== +==26828== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt +==26828== +==26828== +==26828== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26828== +==26828== +==26828== +==26828== HEAP SUMMARY: +==26828== in use at exit: 618,279 bytes in 8,235 blocks +==26828== total heap usage: 6,672,056 allocs, 6,663,821 frees, 8,995,229,143 bytes allocated +==26828== +==26828== LEAK SUMMARY: +==26828== definitely lost: 0 bytes in 0 blocks +==26828== indirectly lost: 0 bytes in 0 blocks +==26828== possibly lost: 0 bytes in 0 blocks +==26828== still reachable: 56 bytes in 3 blocks +==26828== suppressed: 618,223 bytes in 8,232 blocks +==26828== Reachable blocks (those to which a pointer was found) are not shown. +==26828== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26828== +==26828== For lists of detected and suppressed errors, rerun with: -s +==26828== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..f687680d7 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26654== Memcheck, a memory error detector +==26654== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26654== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26654== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26654== Parent PID: 24036 +==26654== +==26654== +==26654== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26654== Open file descriptor 12: +==26654== at 0xF92407D: pipe (pipe.c:29) +==26654== by 0x196AD07D: ??? +==26654== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26654== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26654== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26654== by 0x10210D38: PetscInitialize (pinit.c:924) +==26654== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26654== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26654== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26654== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26654== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26654== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26654== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26654== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) +==26654== +==26654== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26654== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==26654== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26654== by 0xF137822: ??? +==26654== by 0xF13796F: ??? +==26654== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26654== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26654== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26654== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26654== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26654== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26654== by 0x10210D38: PetscInitialize (pinit.c:924) +==26654== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26654== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26654== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26654== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26654== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26654== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26654== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26654== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) +==26654== +==26654== Open file descriptor 113: +==26654== +==26654== +==26654== Open file descriptor 110: +==26654== +==26654== +==26654== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt +==26654== +==26654== +==26654== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26654== +==26654== +==26654== +==26654== HEAP SUMMARY: +==26654== in use at exit: 618,311 bytes in 8,236 blocks +==26654== total heap usage: 17,826,378 allocs, 17,818,142 frees, 30,026,992,795 bytes allocated +==26654== +==26654== LEAK SUMMARY: +==26654== definitely lost: 0 bytes in 0 blocks +==26654== indirectly lost: 0 bytes in 0 blocks +==26654== possibly lost: 0 bytes in 0 blocks +==26654== still reachable: 88 bytes in 4 blocks +==26654== suppressed: 618,223 bytes in 8,232 blocks +==26654== Reachable blocks (those to which a pointer was found) are not shown. +==26654== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26654== +==26654== For lists of detected and suppressed errors, rerun with: -s +==26654== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestOffLatticeSimulationWithPdes_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOffLatticeSimulationWithPdes_valgrind.txt new file mode 100644 index 000000000..322e117a0 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOffLatticeSimulationWithPdes_valgrind.txt @@ -0,0 +1,73 @@ +==26940== Memcheck, a memory error detector +==26940== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26940== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26940== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info +==26940== Parent PID: 24036 +==26940== +==26940== +==26940== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26940== Open file descriptor 12: +==26940== at 0xFCC107D: pipe (pipe.c:29) +==26940== by 0x196AC07D: ??? +==26940== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26940== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26940== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26940== by 0x10210D38: PetscInitialize (pinit.c:924) +==26940== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26940== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26940== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26940== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26940== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26940== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26940== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26940== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) +==26940== +==26940== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26940== at 0xFCC5A1C: __open_nocancel (open64_nocancel.c:39) +==26940== by 0xFC49BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26940== by 0xF4D4822: ??? +==26940== by 0xF4D496F: ??? +==26940== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26940== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26940== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26940== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26940== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26940== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26940== by 0x10210D38: PetscInitialize (pinit.c:924) +==26940== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26940== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26940== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26940== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26940== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26940== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26940== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26940== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) +==26940== +==26940== Open file descriptor 113: +==26940== +==26940== +==26940== Open file descriptor 110: +==26940== +==26940== +==26940== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt +==26940== +==26940== +==26940== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26940== +==26940== +==26940== +==26940== HEAP SUMMARY: +==26940== in use at exit: 618,279 bytes in 8,235 blocks +==26940== total heap usage: 7,487,376 allocs, 7,479,141 frees, 2,641,934,273 bytes allocated +==26940== +==26940== LEAK SUMMARY: +==26940== definitely lost: 0 bytes in 0 blocks +==26940== indirectly lost: 0 bytes in 0 blocks +==26940== possibly lost: 0 bytes in 0 blocks +==26940== still reachable: 56 bytes in 3 blocks +==26940== suppressed: 618,223 bytes in 8,232 blocks +==26940== Reachable blocks (those to which a pointer was found) are not shown. +==26940== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26940== +==26940== For lists of detected and suppressed errors, rerun with: -s +==26940== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..fd615753f --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==27226== Memcheck, a memory error detector +==27226== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==27226== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==27226== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==27226== Parent PID: 24036 +==27226== +==27226== +==27226== FILE DESCRIPTORS: 9 open (3 std) at exit. +==27226== Open file descriptor 12: +==27226== at 0x10DD907D: pipe (pipe.c:29) +==27226== by 0x196AD07D: ??? +==27226== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27226== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27226== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27226== by 0xF28AD38: PetscInitialize (pinit.c:924) +==27226== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27226== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27226== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==27226== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27226== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27226== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27226== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27226== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) +==27226== +==27226== Open file descriptor 8: /dev/shm/open_mpi.0000 +==27226== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==27226== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==27226== by 0xF137822: ??? +==27226== by 0xF13796F: ??? +==27226== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27226== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27226== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27226== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27226== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27226== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27226== by 0xF28AD38: PetscInitialize (pinit.c:924) +==27226== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27226== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27226== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==27226== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27226== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27226== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27226== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27226== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) +==27226== +==27226== Open file descriptor 113: +==27226== +==27226== +==27226== Open file descriptor 110: +==27226== +==27226== +==27226== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt +==27226== +==27226== +==27226== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==27226== +==27226== +==27226== +==27226== HEAP SUMMARY: +==27226== in use at exit: 618,279 bytes in 8,235 blocks +==27226== total heap usage: 9,703,047 allocs, 9,694,812 frees, 2,583,526,505 bytes allocated +==27226== +==27226== LEAK SUMMARY: +==27226== definitely lost: 0 bytes in 0 blocks +==27226== indirectly lost: 0 bytes in 0 blocks +==27226== possibly lost: 0 bytes in 0 blocks +==27226== still reachable: 56 bytes in 3 blocks +==27226== suppressed: 618,223 bytes in 8,232 blocks +==27226== Reachable blocks (those to which a pointer was found) are not shown. +==27226== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==27226== +==27226== For lists of detected and suppressed errors, rerun with: -s +==27226== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestOffLatticeSimulation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOffLatticeSimulation_valgrind.txt new file mode 100644 index 000000000..2eba16127 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOffLatticeSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==26515== Memcheck, a memory error detector +==26515== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26515== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26515== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation -malloc_debug -malloc_dump -memory_info +==26515== Parent PID: 24036 +==26515== +==26515== +==26515== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26515== Open file descriptor 12: +==26515== at 0xF92407D: pipe (pipe.c:29) +==26515== by 0x196AD07D: ??? +==26515== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26515== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26515== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26515== by 0x10210D38: PetscInitialize (pinit.c:924) +==26515== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26515== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26515== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26515== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26515== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26515== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26515== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26515== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) +==26515== +==26515== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26515== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==26515== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26515== by 0xF137822: ??? +==26515== by 0xF13796F: ??? +==26515== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26515== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26515== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26515== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26515== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26515== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26515== by 0x10210D38: PetscInitialize (pinit.c:924) +==26515== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26515== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26515== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26515== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26515== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26515== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26515== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26515== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) +==26515== +==26515== Open file descriptor 113: +==26515== +==26515== +==26515== Open file descriptor 110: +==26515== +==26515== +==26515== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation_valgrind.txt +==26515== +==26515== +==26515== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26515== +==26515== +==26515== +==26515== HEAP SUMMARY: +==26515== in use at exit: 618,279 bytes in 8,235 blocks +==26515== total heap usage: 12,303,092 allocs, 12,294,857 frees, 3,798,134,666 bytes allocated +==26515== +==26515== LEAK SUMMARY: +==26515== definitely lost: 0 bytes in 0 blocks +==26515== indirectly lost: 0 bytes in 0 blocks +==26515== possibly lost: 0 bytes in 0 blocks +==26515== still reachable: 56 bytes in 3 blocks +==26515== suppressed: 618,223 bytes in 8,232 blocks +==26515== Reachable blocks (those to which a pointer was found) are not shown. +==26515== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26515== +==26515== For lists of detected and suppressed errors, rerun with: -s +==26515== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..bd0b19ca7 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==27355== Memcheck, a memory error detector +==27355== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==27355== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==27355== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==27355== Parent PID: 24036 +==27355== +==27355== +==27355== FILE DESCRIPTORS: 9 open (3 std) at exit. +==27355== Open file descriptor 12: +==27355== at 0xFDA007D: pipe (pipe.c:29) +==27355== by 0x196AC07D: ??? +==27355== by 0x14DD84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27355== by 0x119FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27355== by 0x11995D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27355== by 0x1068CD38: PetscInitialize (pinit.c:924) +==27355== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27355== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27355== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27355== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27355== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27355== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27355== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27355== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) +==27355== +==27355== Open file descriptor 8: /dev/shm/open_mpi.0000 +==27355== at 0xFDA4A1C: __open_nocancel (open64_nocancel.c:39) +==27355== by 0xFD28BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==27355== by 0xF137822: ??? +==27355== by 0xF13796F: ??? +==27355== by 0x14E7D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27355== by 0x14E7D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27355== by 0x14E33922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27355== by 0x14DD82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27355== by 0x119FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27355== by 0x11995D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27355== by 0x1068CD38: PetscInitialize (pinit.c:924) +==27355== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27355== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27355== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27355== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27355== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27355== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27355== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27355== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) +==27355== +==27355== Open file descriptor 113: +==27355== +==27355== +==27355== Open file descriptor 110: +==27355== +==27355== +==27355== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt +==27355== +==27355== +==27355== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==27355== +==27355== +==27355== +==27355== HEAP SUMMARY: +==27355== in use at exit: 618,279 bytes in 8,235 blocks +==27355== total heap usage: 7,110,677 allocs, 7,102,442 frees, 8,072,008,323 bytes allocated +==27355== +==27355== LEAK SUMMARY: +==27355== definitely lost: 0 bytes in 0 blocks +==27355== indirectly lost: 0 bytes in 0 blocks +==27355== possibly lost: 0 bytes in 0 blocks +==27355== still reachable: 56 bytes in 3 blocks +==27355== suppressed: 618,223 bytes in 8,232 blocks +==27355== Reachable blocks (those to which a pointer was found) are not shown. +==27355== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==27355== +==27355== For lists of detected and suppressed errors, rerun with: -s +==27355== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestOnLatticeSimulationWithPdes_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOnLatticeSimulationWithPdes_valgrind.txt new file mode 100644 index 000000000..842662fbe --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOnLatticeSimulationWithPdes_valgrind.txt @@ -0,0 +1,73 @@ +==27681== Memcheck, a memory error detector +==27681== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==27681== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==27681== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info +==27681== Parent PID: 24036 +==27681== +==27681== +==27681== FILE DESCRIPTORS: 9 open (3 std) at exit. +==27681== Open file descriptor 12: +==27681== at 0xFC7F07D: pipe (pipe.c:29) +==27681== by 0x196AC07D: ??? +==27681== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27681== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27681== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27681== by 0x10210D38: PetscInitialize (pinit.c:924) +==27681== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27681== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27681== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27681== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27681== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27681== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27681== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27681== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) +==27681== +==27681== Open file descriptor 8: /dev/shm/open_mpi.0000 +==27681== at 0xFC83A1C: __open_nocancel (open64_nocancel.c:39) +==27681== by 0xFC07BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==27681== by 0xF4D4822: ??? +==27681== by 0xF4D496F: ??? +==27681== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27681== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27681== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27681== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27681== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27681== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27681== by 0x10210D38: PetscInitialize (pinit.c:924) +==27681== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27681== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27681== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27681== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27681== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27681== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27681== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27681== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) +==27681== +==27681== Open file descriptor 113: +==27681== +==27681== +==27681== Open file descriptor 110: +==27681== +==27681== +==27681== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt +==27681== +==27681== +==27681== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==27681== +==27681== +==27681== +==27681== HEAP SUMMARY: +==27681== in use at exit: 618,279 bytes in 8,235 blocks +==27681== total heap usage: 2,356,888 allocs, 2,348,653 frees, 1,775,835,723 bytes allocated +==27681== +==27681== LEAK SUMMARY: +==27681== definitely lost: 0 bytes in 0 blocks +==27681== indirectly lost: 0 bytes in 0 blocks +==27681== possibly lost: 0 bytes in 0 blocks +==27681== still reachable: 56 bytes in 3 blocks +==27681== suppressed: 618,223 bytes in 8,232 blocks +==27681== Reachable blocks (those to which a pointer was found) are not shown. +==27681== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==27681== +==27681== For lists of detected and suppressed errors, rerun with: -s +==27681== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..58f91debe --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==37126== Memcheck, a memory error detector +==37126== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==37126== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==37126== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==37126== Parent PID: 24036 +==37126== +==37126== +==37126== FILE DESCRIPTORS: 9 open (3 std) at exit. +==37126== Open file descriptor 12: +==37126== at 0xF92407D: pipe (pipe.c:29) +==37126== by 0x196AD07D: ??? +==37126== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==37126== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37126== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37126== by 0x10210D38: PetscInitialize (pinit.c:924) +==37126== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==37126== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==37126== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==37126== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==37126== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==37126== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==37126== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==37126== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) +==37126== +==37126== Open file descriptor 8: /dev/shm/open_mpi.0000 +==37126== at 0xF928A1C: __open_nocancel (open64_nocancel.c:39) +==37126== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==37126== by 0xF137822: ??? +==37126== by 0xF13796F: ??? +==37126== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37126== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37126== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37126== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==37126== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37126== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37126== by 0x10210D38: PetscInitialize (pinit.c:924) +==37126== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==37126== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==37126== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==37126== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==37126== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==37126== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==37126== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==37126== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) +==37126== +==37126== Open file descriptor 113: +==37126== +==37126== +==37126== Open file descriptor 110: +==37126== +==37126== +==37126== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt +==37126== +==37126== +==37126== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==37126== +==37126== +==37126== +==37126== HEAP SUMMARY: +==37126== in use at exit: 618,295 bytes in 8,236 blocks +==37126== total heap usage: 11,682,197 allocs, 11,673,961 frees, 2,208,181,710 bytes allocated +==37126== +==37126== LEAK SUMMARY: +==37126== definitely lost: 0 bytes in 0 blocks +==37126== indirectly lost: 0 bytes in 0 blocks +==37126== possibly lost: 0 bytes in 0 blocks +==37126== still reachable: 72 bytes in 4 blocks +==37126== suppressed: 618,223 bytes in 8,232 blocks +==37126== Reachable blocks (those to which a pointer was found) are not shown. +==37126== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==37126== +==37126== For lists of detected and suppressed errors, rerun with: -s +==37126== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestOperatorSplittingMonodomainSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOperatorSplittingMonodomainSolver_valgrind.txt new file mode 100644 index 000000000..b06ef3c81 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOperatorSplittingMonodomainSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43559== Memcheck, a memory error detector +==43559== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43559== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43559== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestOperatorSplittingMonodomainSolver -malloc_debug -malloc_dump -memory_info +==43559== Parent PID: 24036 +==43559== +==43559== +==43559== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43559== Open file descriptor 12: +==43559== at 0xA75007D: pipe (pipe.c:29) +==43559== by 0x1432407D: ??? +==43559== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43559== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43559== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43559== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43559== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43559== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43559== by 0x1199B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43559== by 0x115213: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43559== by 0x1175A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43559== by 0x11749F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43559== by 0x117AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43559== by 0x113A15: main (TestOperatorSplittingMonodomainSolver.cpp:18) +==43559== +==43559== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43559== at 0xA754A1C: __open_nocancel (open64_nocancel.c:39) +==43559== by 0xA6D8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43559== by 0xA072822: ??? +==43559== by 0xA07296F: ??? +==43559== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43559== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43559== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43559== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43559== by 0xBE49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43559== by 0xBDE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43559== by 0xAAD9D38: PetscInitialize (pinit.c:924) +==43559== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43559== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43559== by 0x1199B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43559== by 0x115213: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43559== by 0x1175A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43559== by 0x11749F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43559== by 0x117AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43559== by 0x113A15: main (TestOperatorSplittingMonodomainSolver.cpp:18) +==43559== +==43559== Open file descriptor 113: +==43559== +==43559== +==43559== Open file descriptor 110: +==43559== +==43559== +==43559== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOperatorSplittingMonodomainSolver_valgrind.txt +==43559== +==43559== +==43559== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43559== +==43559== +==43559== +==43559== HEAP SUMMARY: +==43559== in use at exit: 618,814 bytes in 8,248 blocks +==43559== total heap usage: 81,700 allocs, 73,452 frees, 1,494,729,100 bytes allocated +==43559== +==43559== LEAK SUMMARY: +==43559== definitely lost: 0 bytes in 0 blocks +==43559== indirectly lost: 0 bytes in 0 blocks +==43559== possibly lost: 0 bytes in 0 blocks +==43559== still reachable: 24 bytes in 2 blocks +==43559== suppressed: 618,790 bytes in 8,246 blocks +==43559== Reachable blocks (those to which a pointer was found) are not shown. +==43559== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43559== +==43559== For lists of detected and suppressed errors, rerun with: -s +==43559== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestOutputDirectoryFifoQueue_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOutputDirectoryFifoQueue_valgrind.txt new file mode 100644 index 000000000..e4e7096d6 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOutputDirectoryFifoQueue_valgrind.txt @@ -0,0 +1,73 @@ +==24206== Memcheck, a memory error detector +==24206== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24206== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24206== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestOutputDirectoryFifoQueue -malloc_debug -malloc_dump -memory_info +==24206== Parent PID: 24036 +==24206== +==24206== +==24206== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24206== Open file descriptor 12: +==24206== at 0x4CB207D: pipe (pipe.c:29) +==24206== by 0xAEA507D: ??? +==24206== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24206== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24206== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24206== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24206== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24206== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24206== by 0x114118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24206== by 0x10FF93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24206== by 0x1121E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24206== by 0x1120DD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24206== by 0x1126F1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24206== by 0x10E795: main (TestOutputDirectoryFifoQueue.cpp:18) +==24206== +==24206== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24206== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24206== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24206== by 0x4935822: ??? +==24206== by 0x493596F: ??? +==24206== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24206== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24206== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24206== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24206== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24206== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24206== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24206== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24206== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24206== by 0x114118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24206== by 0x10FF93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24206== by 0x1121E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24206== by 0x1120DD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24206== by 0x1126F1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24206== by 0x10E795: main (TestOutputDirectoryFifoQueue.cpp:18) +==24206== +==24206== Open file descriptor 113: +==24206== +==24206== +==24206== Open file descriptor 110: +==24206== +==24206== +==24206== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOutputDirectoryFifoQueue_valgrind.txt +==24206== +==24206== +==24206== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24206== +==24206== +==24206== +==24206== HEAP SUMMARY: +==24206== in use at exit: 617,838 bytes in 8,238 blocks +==24206== total heap usage: 45,612 allocs, 37,374 frees, 1,338,679,807 bytes allocated +==24206== +==24206== LEAK SUMMARY: +==24206== definitely lost: 0 bytes in 0 blocks +==24206== indirectly lost: 0 bytes in 0 blocks +==24206== possibly lost: 0 bytes in 0 blocks +==24206== still reachable: 24 bytes in 2 blocks +==24206== suppressed: 617,814 bytes in 8,236 blocks +==24206== Reachable blocks (those to which a pointer was found) are not shown. +==24206== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24206== +==24206== For lists of detected and suppressed errors, rerun with: -s +==24206== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestOutputFileHandler_valgrind.txt b/log-files/2024-09-20_21-41-09/TestOutputFileHandler_valgrind.txt new file mode 100644 index 000000000..0905686df --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestOutputFileHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24207== Memcheck, a memory error detector +==24207== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24207== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24207== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestOutputFileHandler -malloc_debug -malloc_dump -memory_info +==24207== Parent PID: 24036 +==24207== +==24207== +==24207== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24207== Open file descriptor 12: +==24207== at 0x4CB207D: pipe (pipe.c:29) +==24207== by 0xAEA507D: ??? +==24207== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24207== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24207== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24207== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24207== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24207== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24207== by 0x11718A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24207== by 0x1128AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24207== by 0x11514C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24207== by 0x114FEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24207== by 0x115683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24207== by 0x110CD5: main (TestOutputFileHandler.cpp:19) +==24207== +==24207== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24207== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24207== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24207== by 0x4935822: ??? +==24207== by 0x493596F: ??? +==24207== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24207== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24207== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24207== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24207== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24207== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24207== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24207== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24207== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24207== by 0x11718A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24207== by 0x1128AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24207== by 0x11514C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24207== by 0x114FEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24207== by 0x115683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24207== by 0x110CD5: main (TestOutputFileHandler.cpp:19) +==24207== +==24207== Open file descriptor 113: +==24207== +==24207== +==24207== Open file descriptor 110: +==24207== +==24207== +==24207== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOutputFileHandler_valgrind.txt +==24207== +==24207== +==24207== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24207== +==24207== +==24207== +==24207== HEAP SUMMARY: +==24207== in use at exit: 617,838 bytes in 8,238 blocks +==24207== total heap usage: 46,517 allocs, 38,279 frees, 1,339,257,003 bytes allocated +==24207== +==24207== LEAK SUMMARY: +==24207== definitely lost: 0 bytes in 0 blocks +==24207== indirectly lost: 0 bytes in 0 blocks +==24207== possibly lost: 0 bytes in 0 blocks +==24207== still reachable: 24 bytes in 2 blocks +==24207== suppressed: 617,814 bytes in 8,236 blocks +==24207== Reachable blocks (those to which a pointer was found) are not shown. +==24207== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24207== +==24207== For lists of detected and suppressed errors, rerun with: -s +==24207== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestPCBlockDiagonal_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPCBlockDiagonal_valgrind.txt new file mode 100644 index 000000000..4178b1cc6 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPCBlockDiagonal_valgrind.txt @@ -0,0 +1,73 @@ +==24377== Memcheck, a memory error detector +==24377== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24377== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24377== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCBlockDiagonal -malloc_debug -malloc_dump -memory_info +==24377== Parent PID: 24036 +==24377== +==24377== +==24377== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24377== Open file descriptor 12: +==24377== at 0x60C107D: pipe (pipe.c:29) +==24377== by 0xAF3907D: ??? +==24377== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24377== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24377== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24377== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24377== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24377== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24377== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24377== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24377== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24377== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24377== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24377== by 0x10D995: main (TestPCBlockDiagonal.cpp:18) +==24377== +==24377== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24377== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24377== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24377== by 0x5D42822: ??? +==24377== by 0x5D4296F: ??? +==24377== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24377== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24377== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24377== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24377== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24377== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24377== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24377== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24377== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24377== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24377== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24377== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24377== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24377== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24377== by 0x10D995: main (TestPCBlockDiagonal.cpp:18) +==24377== +==24377== Open file descriptor 113: +==24377== +==24377== +==24377== Open file descriptor 110: +==24377== +==24377== +==24377== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCBlockDiagonal_valgrind.txt +==24377== +==24377== +==24377== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24377== +==24377== +==24377== +==24377== HEAP SUMMARY: +==24377== in use at exit: 617,870 bytes in 8,239 blocks +==24377== total heap usage: 56,332 allocs, 48,093 frees, 1,364,706,760 bytes allocated +==24377== +==24377== LEAK SUMMARY: +==24377== definitely lost: 0 bytes in 0 blocks +==24377== indirectly lost: 0 bytes in 0 blocks +==24377== possibly lost: 0 bytes in 0 blocks +==24377== still reachable: 40 bytes in 3 blocks +==24377== suppressed: 617,830 bytes in 8,236 blocks +==24377== Reachable blocks (those to which a pointer was found) are not shown. +==24377== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24377== +==24377== For lists of detected and suppressed errors, rerun with: -s +==24377== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestPCLDUFactorisation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPCLDUFactorisation_valgrind.txt new file mode 100644 index 000000000..e8af7b95e --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPCLDUFactorisation_valgrind.txt @@ -0,0 +1,73 @@ +==24380== Memcheck, a memory error detector +==24380== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24380== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24380== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCLDUFactorisation -malloc_debug -malloc_dump -memory_info +==24380== Parent PID: 24036 +==24380== +==24380== +==24380== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24380== Open file descriptor 12: +==24380== at 0x60C107D: pipe (pipe.c:29) +==24380== by 0xAF3907D: ??? +==24380== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24380== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24380== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24380== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24380== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24380== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24380== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24380== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24380== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24380== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24380== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24380== by 0x10D995: main (TestPCLDUFactorisation.cpp:18) +==24380== +==24380== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24380== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24380== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24380== by 0x5D42822: ??? +==24380== by 0x5D4296F: ??? +==24380== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24380== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24380== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24380== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24380== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24380== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24380== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24380== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24380== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24380== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24380== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24380== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24380== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24380== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24380== by 0x10D995: main (TestPCLDUFactorisation.cpp:18) +==24380== +==24380== Open file descriptor 113: +==24380== +==24380== +==24380== Open file descriptor 110: +==24380== +==24380== +==24380== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCLDUFactorisation_valgrind.txt +==24380== +==24380== +==24380== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24380== +==24380== +==24380== +==24380== HEAP SUMMARY: +==24380== in use at exit: 617,870 bytes in 8,239 blocks +==24380== total heap usage: 57,131 allocs, 48,892 frees, 1,365,678,041 bytes allocated +==24380== +==24380== LEAK SUMMARY: +==24380== definitely lost: 0 bytes in 0 blocks +==24380== indirectly lost: 0 bytes in 0 blocks +==24380== possibly lost: 0 bytes in 0 blocks +==24380== still reachable: 40 bytes in 3 blocks +==24380== suppressed: 617,830 bytes in 8,236 blocks +==24380== Reachable blocks (those to which a pointer was found) are not shown. +==24380== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24380== +==24380== For lists of detected and suppressed errors, rerun with: -s +==24380== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestPCTwoLevelsBlockDiagonal_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPCTwoLevelsBlockDiagonal_valgrind.txt new file mode 100644 index 000000000..37f0d4a22 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPCTwoLevelsBlockDiagonal_valgrind.txt @@ -0,0 +1,73 @@ +==24387== Memcheck, a memory error detector +==24387== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24387== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24387== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCTwoLevelsBlockDiagonal -malloc_debug -malloc_dump -memory_info +==24387== Parent PID: 24036 +==24387== +==24387== +==24387== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24387== Open file descriptor 12: +==24387== at 0x60C107D: pipe (pipe.c:29) +==24387== by 0xAF3907D: ??? +==24387== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24387== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24387== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24387== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24387== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24387== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24387== by 0x114A0E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24387== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24387== by 0x1127C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24387== by 0x1126C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24387== by 0x112CD5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24387== by 0x10EA95: main (TestPCTwoLevelsBlockDiagonal.cpp:18) +==24387== +==24387== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24387== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24387== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24387== by 0x5D42822: ??? +==24387== by 0x5D4296F: ??? +==24387== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24387== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24387== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24387== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24387== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24387== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24387== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24387== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24387== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24387== by 0x114A0E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24387== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24387== by 0x1127C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24387== by 0x1126C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24387== by 0x112CD5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24387== by 0x10EA95: main (TestPCTwoLevelsBlockDiagonal.cpp:18) +==24387== +==24387== Open file descriptor 113: +==24387== +==24387== +==24387== Open file descriptor 110: +==24387== +==24387== +==24387== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCTwoLevelsBlockDiagonal_valgrind.txt +==24387== +==24387== +==24387== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24387== +==24387== +==24387== +==24387== HEAP SUMMARY: +==24387== in use at exit: 617,870 bytes in 8,239 blocks +==24387== total heap usage: 76,512 allocs, 68,273 frees, 1,345,540,281 bytes allocated +==24387== +==24387== LEAK SUMMARY: +==24387== definitely lost: 0 bytes in 0 blocks +==24387== indirectly lost: 0 bytes in 0 blocks +==24387== possibly lost: 0 bytes in 0 blocks +==24387== still reachable: 40 bytes in 3 blocks +==24387== suppressed: 617,830 bytes in 8,236 blocks +==24387== Reachable blocks (those to which a pointer was found) are not shown. +==24387== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24387== +==24387== For lists of detected and suppressed errors, rerun with: -s +==24387== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestPapillaryFibreCalculator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPapillaryFibreCalculator_valgrind.txt new file mode 100644 index 000000000..c03348a99 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPapillaryFibreCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==41484== Memcheck, a memory error detector +==41484== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41484== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41484== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPapillaryFibreCalculator -malloc_debug -malloc_dump -memory_info +==41484== Parent PID: 24036 +==41484== +==41484== +==41484== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41484== Open file descriptor 113: +==41484== +==41484== +==41484== Open file descriptor 110: +==41484== +==41484== +==41484== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPapillaryFibreCalculator_valgrind.txt +==41484== +==41484== +==41484== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41484== +==41484== +==41484== +==41484== HEAP SUMMARY: +==41484== in use at exit: 24 bytes in 2 blocks +==41484== total heap usage: 7,291 allocs, 7,289 frees, 1,074,336 bytes allocated +==41484== +==41484== LEAK SUMMARY: +==41484== definitely lost: 0 bytes in 0 blocks +==41484== indirectly lost: 0 bytes in 0 blocks +==41484== possibly lost: 0 bytes in 0 blocks +==41484== still reachable: 24 bytes in 2 blocks +==41484== suppressed: 0 bytes in 0 blocks +==41484== Reachable blocks (those to which a pointer was found) are not shown. +==41484== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41484== +==41484== For lists of detected and suppressed errors, rerun with: -s +==41484== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-20_21-41-09/TestParabolicBoxDomainPdeModifier_valgrind.txt b/log-files/2024-09-20_21-41-09/TestParabolicBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..b44dbb1d3 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestParabolicBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25546== Memcheck, a memory error detector +==25546== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25546== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25546== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParabolicBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25546== Parent PID: 24036 +==25546== +==25546== +==25546== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25546== Open file descriptor 12: +==25546== at 0x1108F07D: pipe (pipe.c:29) +==25546== by 0x196AC07D: ??? +==25546== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25546== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25546== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25546== by 0xF627D38: PetscInitialize (pinit.c:924) +==25546== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25546== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25546== by 0x133C67: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25546== by 0x12E57D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25546== by 0x13121C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25546== by 0x1310BC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25546== by 0x131753: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25546== by 0x12C9A5: main (TestParabolicBoxDomainPdeModifier.cpp:19) +==25546== +==25546== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25546== at 0x11093A1C: __open_nocancel (open64_nocancel.c:39) +==25546== by 0x11017BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25546== by 0xF4D4822: ??? +==25546== by 0xF4D496F: ??? +==25546== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25546== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25546== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25546== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25546== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25546== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25546== by 0xF627D38: PetscInitialize (pinit.c:924) +==25546== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25546== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25546== by 0x133C67: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25546== by 0x12E57D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25546== by 0x13121C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25546== by 0x1310BC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25546== by 0x131753: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25546== by 0x12C9A5: main (TestParabolicBoxDomainPdeModifier.cpp:19) +==25546== +==25546== Open file descriptor 113: +==25546== +==25546== +==25546== Open file descriptor 110: +==25546== +==25546== +==25546== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParabolicBoxDomainPdeModifier_valgrind.txt +==25546== +==25546== +==25546== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25546== +==25546== +==25546== +==25546== HEAP SUMMARY: +==25546== in use at exit: 618,279 bytes in 8,235 blocks +==25546== total heap usage: 2,607,146 allocs, 2,598,911 frees, 1,618,354,778 bytes allocated +==25546== +==25546== LEAK SUMMARY: +==25546== definitely lost: 0 bytes in 0 blocks +==25546== indirectly lost: 0 bytes in 0 blocks +==25546== possibly lost: 0 bytes in 0 blocks +==25546== still reachable: 56 bytes in 3 blocks +==25546== suppressed: 618,223 bytes in 8,232 blocks +==25546== Reachable blocks (those to which a pointer was found) are not shown. +==25546== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25546== +==25546== For lists of detected and suppressed errors, rerun with: -s +==25546== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestParabolicGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-09-20_21-41-09/TestParabolicGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..6401d4287 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestParabolicGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25556== Memcheck, a memory error detector +==25556== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25556== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25556== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParabolicGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25556== Parent PID: 24036 +==25556== +==25556== +==25556== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25556== Open file descriptor 12: +==25556== at 0x1117607D: pipe (pipe.c:29) +==25556== by 0x196AC07D: ??? +==25556== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25556== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25556== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25556== by 0xF627D38: PetscInitialize (pinit.c:924) +==25556== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25556== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25556== by 0x1396A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25556== by 0x13395D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25556== by 0x136826: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25556== by 0x1366C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25556== by 0x136D5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25556== by 0x131D85: main (TestParabolicGrowingDomainPdeModifier.cpp:19) +==25556== +==25556== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25556== at 0x1117AA1C: __open_nocancel (open64_nocancel.c:39) +==25556== by 0x110FEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25556== by 0xF4D4822: ??? +==25556== by 0xF4D496F: ??? +==25556== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25556== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25556== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25556== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25556== by 0x10997418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25556== by 0x10930D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25556== by 0xF627D38: PetscInitialize (pinit.c:924) +==25556== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25556== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25556== by 0x1396A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25556== by 0x13395D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25556== by 0x136826: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25556== by 0x1366C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25556== by 0x136D5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25556== by 0x131D85: main (TestParabolicGrowingDomainPdeModifier.cpp:19) +==25556== +==25556== Open file descriptor 113: +==25556== +==25556== +==25556== Open file descriptor 110: +==25556== +==25556== +==25556== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParabolicGrowingDomainPdeModifier_valgrind.txt +==25556== +==25556== +==25556== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25556== +==25556== +==25556== +==25556== HEAP SUMMARY: +==25556== in use at exit: 618,279 bytes in 8,235 blocks +==25556== total heap usage: 7,057,265 allocs, 7,049,030 frees, 1,809,463,644 bytes allocated +==25556== +==25556== LEAK SUMMARY: +==25556== definitely lost: 0 bytes in 0 blocks +==25556== indirectly lost: 0 bytes in 0 blocks +==25556== possibly lost: 0 bytes in 0 blocks +==25556== still reachable: 56 bytes in 3 blocks +==25556== suppressed: 618,223 bytes in 8,232 blocks +==25556== Reachable blocks (those to which a pointer was found) are not shown. +==25556== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25556== +==25556== For lists of detected and suppressed errors, rerun with: -s +==25556== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestParallelCellsGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestParallelCellsGenerator_valgrind.txt new file mode 100644 index 000000000..500ae287b --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestParallelCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==25480== Memcheck, a memory error detector +==25480== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25480== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25480== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParallelCellsGenerator -malloc_debug -malloc_dump -memory_info +==25480== Parent PID: 24036 +==25480== +==25480== +==25480== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25480== Open file descriptor 12: +==25480== at 0x10CB007D: pipe (pipe.c:29) +==25480== by 0x196AD07D: ??? +==25480== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25480== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25480== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25480== by 0xF225D38: PetscInitialize (pinit.c:924) +==25480== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25480== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25480== by 0x123D94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25480== by 0x11ED1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25480== by 0x1216E0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25480== by 0x121580: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25480== by 0x121C17: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25480== by 0x11D0F5: main (TestParallelCellsGenerator.cpp:19) +==25480== +==25480== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25480== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==25480== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25480== by 0x104B5822: ??? +==25480== by 0x104B596F: ??? +==25480== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25480== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25480== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25480== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25480== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25480== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25480== by 0xF225D38: PetscInitialize (pinit.c:924) +==25480== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25480== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25480== by 0x123D94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25480== by 0x11ED1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25480== by 0x1216E0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25480== by 0x121580: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25480== by 0x121C17: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25480== by 0x11D0F5: main (TestParallelCellsGenerator.cpp:19) +==25480== +==25480== Open file descriptor 113: +==25480== +==25480== +==25480== Open file descriptor 110: +==25480== +==25480== +==25480== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelCellsGenerator_valgrind.txt +==25480== +==25480== +==25480== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25480== +==25480== +==25480== +==25480== HEAP SUMMARY: +==25480== in use at exit: 618,414 bytes in 8,240 blocks +==25480== total heap usage: 54,340 allocs, 46,100 frees, 1,339,090,736 bytes allocated +==25480== +==25480== LEAK SUMMARY: +==25480== definitely lost: 0 bytes in 0 blocks +==25480== indirectly lost: 0 bytes in 0 blocks +==25480== possibly lost: 0 bytes in 0 blocks +==25480== still reachable: 120 bytes in 4 blocks +==25480== suppressed: 618,294 bytes in 8,236 blocks +==25480== Reachable blocks (those to which a pointer was found) are not shown. +==25480== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25480== +==25480== For lists of detected and suppressed errors, rerun with: -s +==25480== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestParallelColumnDataReaderWriter_valgrind.txt b/log-files/2024-09-20_21-41-09/TestParallelColumnDataReaderWriter_valgrind.txt new file mode 100644 index 000000000..e5b831a24 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestParallelColumnDataReaderWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24310== Memcheck, a memory error detector +==24310== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24310== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24310== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestParallelColumnDataReaderWriter -malloc_debug -malloc_dump -memory_info +==24310== Parent PID: 24036 +==24310== +==24310== +==24310== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24310== Open file descriptor 12: +==24310== at 0x60A507D: pipe (pipe.c:29) +==24310== by 0xAF1807D: ??? +==24310== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24310== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24310== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24310== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24310== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24310== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24310== by 0x11B354: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24310== by 0x114A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24310== by 0x1174D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24310== by 0x117378: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24310== by 0x117A0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24310== by 0x112E75: main (TestParallelColumnDataReaderWriter.cpp:19) +==24310== +==24310== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24310== at 0x60A9A1C: __open_nocancel (open64_nocancel.c:39) +==24310== by 0x602DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24310== by 0x5D26822: ??? +==24310== by 0x5D2696F: ??? +==24310== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24310== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24310== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24310== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24310== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24310== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24310== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24310== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24310== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24310== by 0x11B354: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24310== by 0x114A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24310== by 0x1174D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24310== by 0x117378: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24310== by 0x117A0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24310== by 0x112E75: main (TestParallelColumnDataReaderWriter.cpp:19) +==24310== +==24310== Open file descriptor 113: +==24310== +==24310== +==24310== Open file descriptor 110: +==24310== +==24310== +==24310== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelColumnDataReaderWriter_valgrind.txt +==24310== +==24310== +==24310== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24310== +==24310== +==24310== +==24310== HEAP SUMMARY: +==24310== in use at exit: 617,854 bytes in 8,238 blocks +==24310== total heap usage: 46,057 allocs, 37,819 frees, 1,338,788,911 bytes allocated +==24310== +==24310== LEAK SUMMARY: +==24310== definitely lost: 0 bytes in 0 blocks +==24310== indirectly lost: 0 bytes in 0 blocks +==24310== possibly lost: 0 bytes in 0 blocks +==24310== still reachable: 24 bytes in 2 blocks +==24310== suppressed: 617,830 bytes in 8,236 blocks +==24310== Reachable blocks (those to which a pointer was found) are not shown. +==24310== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24310== +==24310== For lists of detected and suppressed errors, rerun with: -s +==24310== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestParallelWriterPerformance_valgrind.txt b/log-files/2024-09-20_21-41-09/TestParallelWriterPerformance_valgrind.txt new file mode 100644 index 000000000..237ff9795 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestParallelWriterPerformance_valgrind.txt @@ -0,0 +1,73 @@ +==24317== Memcheck, a memory error detector +==24317== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24317== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24317== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestParallelWriterPerformance -malloc_debug -malloc_dump -memory_info +==24317== Parent PID: 24036 +==24317== +==24317== +==24317== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24317== Open file descriptor 12: +==24317== at 0x60A507D: pipe (pipe.c:29) +==24317== by 0xAF1807D: ??? +==24317== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24317== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24317== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24317== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24317== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24317== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24317== by 0x11316C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24317== by 0x10F013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24317== by 0x111202: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24317== by 0x1110FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24317== by 0x111711: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24317== by 0x10D815: main (TestParallelWriterPerformance.cpp:18) +==24317== +==24317== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24317== at 0x60A9A1C: __open_nocancel (open64_nocancel.c:39) +==24317== by 0x602DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24317== by 0x5D26822: ??? +==24317== by 0x5D2696F: ??? +==24317== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24317== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24317== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24317== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24317== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24317== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24317== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24317== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24317== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24317== by 0x11316C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24317== by 0x10F013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24317== by 0x111202: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24317== by 0x1110FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24317== by 0x111711: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24317== by 0x10D815: main (TestParallelWriterPerformance.cpp:18) +==24317== +==24317== Open file descriptor 113: +==24317== +==24317== +==24317== Open file descriptor 110: +==24317== +==24317== +==24317== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelWriterPerformance_valgrind.txt +==24317== +==24317== +==24317== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24317== +==24317== +==24317== +==24317== HEAP SUMMARY: +==24317== in use at exit: 617,854 bytes in 8,238 blocks +==24317== total heap usage: 45,427 allocs, 37,189 frees, 1,338,448,575 bytes allocated +==24317== +==24317== LEAK SUMMARY: +==24317== definitely lost: 0 bytes in 0 blocks +==24317== indirectly lost: 0 bytes in 0 blocks +==24317== possibly lost: 0 bytes in 0 blocks +==24317== still reachable: 24 bytes in 2 blocks +==24317== suppressed: 617,830 bytes in 8,236 blocks +==24317== Reachable blocks (those to which a pointer was found) are not shown. +==24317== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24317== +==24317== For lists of detected and suppressed errors, rerun with: -s +==24317== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestPdeSimulationTime_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPdeSimulationTime_valgrind.txt new file mode 100644 index 000000000..498792c9d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPdeSimulationTime_valgrind.txt @@ -0,0 +1,73 @@ +==25250== Memcheck, a memory error detector +==25250== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25250== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25250== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestPdeSimulationTime -malloc_debug -malloc_dump -memory_info +==25250== Parent PID: 24036 +==25250== +==25250== +==25250== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25250== Open file descriptor 12: +==25250== at 0x505107D: pipe (pipe.c:29) +==25250== by 0x104D507D: ??? +==25250== by 0xC31D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25250== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25250== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25250== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25250== by 0x4C971D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25250== by 0x4C97227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25250== by 0x111E6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25250== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25250== by 0x10FF34: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25250== by 0x10FE2F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25250== by 0x110443: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25250== by 0x10C415: main (TestPdeSimulationTime.cpp:18) +==25250== +==25250== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25250== at 0x5055A1C: __open_nocancel (open64_nocancel.c:39) +==25250== by 0x4FD9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25250== by 0x4CD2822: ??? +==25250== by 0x4CD296F: ??? +==25250== by 0xC3C26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25250== by 0xC3C2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25250== by 0xC378922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25250== by 0xC31D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25250== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25250== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25250== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25250== by 0x4C971D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25250== by 0x4C97227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25250== by 0x111E6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25250== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25250== by 0x10FF34: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25250== by 0x10FE2F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25250== by 0x110443: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25250== by 0x10C415: main (TestPdeSimulationTime.cpp:18) +==25250== +==25250== Open file descriptor 113: +==25250== +==25250== +==25250== Open file descriptor 110: +==25250== +==25250== +==25250== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPdeSimulationTime_valgrind.txt +==25250== +==25250== +==25250== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25250== +==25250== +==25250== +==25250== HEAP SUMMARY: +==25250== in use at exit: 618,254 bytes in 8,238 blocks +==25250== total heap usage: 47,331 allocs, 39,093 frees, 1,338,384,664 bytes allocated +==25250== +==25250== LEAK SUMMARY: +==25250== definitely lost: 0 bytes in 0 blocks +==25250== indirectly lost: 0 bytes in 0 blocks +==25250== possibly lost: 0 bytes in 0 blocks +==25250== still reachable: 24 bytes in 2 blocks +==25250== suppressed: 618,230 bytes in 8,236 blocks +==25250== Reachable blocks (those to which a pointer was found) are not shown. +==25250== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25250== +==25250== For lists of detected and suppressed errors, rerun with: -s +==25250== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestPdeTestClasses_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPdeTestClasses_valgrind.txt new file mode 100644 index 000000000..bd580e1b6 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPdeTestClasses_valgrind.txt @@ -0,0 +1,73 @@ +==25034== Memcheck, a memory error detector +==25034== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25034== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25034== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestPdeTestClasses -malloc_debug -malloc_dump -memory_info +==25034== Parent PID: 24036 +==25034== +==25034== +==25034== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25034== Open file descriptor 12: +==25034== at 0x6A3807D: pipe (pipe.c:29) +==25034== by 0x100C307D: ??? +==25034== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25034== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25034== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25034== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==25034== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25034== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25034== by 0x13051E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25034== by 0x12BAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25034== by 0x12E0E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25034== by 0x12DFE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25034== by 0x12E5F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25034== by 0x12A2F5: main (TestPdeTestClasses.cpp:18) +==25034== +==25034== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25034== at 0x6A3CA1C: __open_nocancel (open64_nocancel.c:39) +==25034== by 0x69C0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25034== by 0x6590822: ??? +==25034== by 0x659096F: ??? +==25034== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25034== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25034== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25034== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25034== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25034== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25034== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==25034== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25034== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25034== by 0x13051E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25034== by 0x12BAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25034== by 0x12E0E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25034== by 0x12DFE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25034== by 0x12E5F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25034== by 0x12A2F5: main (TestPdeTestClasses.cpp:18) +==25034== +==25034== Open file descriptor 113: +==25034== +==25034== +==25034== Open file descriptor 110: +==25034== +==25034== +==25034== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPdeTestClasses_valgrind.txt +==25034== +==25034== +==25034== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25034== +==25034== +==25034== +==25034== HEAP SUMMARY: +==25034== in use at exit: 618,222 bytes in 8,238 blocks +==25034== total heap usage: 47,537 allocs, 39,299 frees, 1,338,441,682 bytes allocated +==25034== +==25034== LEAK SUMMARY: +==25034== definitely lost: 0 bytes in 0 blocks +==25034== indirectly lost: 0 bytes in 0 blocks +==25034== possibly lost: 0 bytes in 0 blocks +==25034== still reachable: 24 bytes in 2 blocks +==25034== suppressed: 618,198 bytes in 8,236 blocks +==25034== Reachable blocks (those to which a pointer was found) are not shown. +==25034== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25034== +==25034== For lists of detected and suppressed errors, rerun with: -s +==25034== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestPerElementWriter_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPerElementWriter_valgrind.txt new file mode 100644 index 000000000..210064dfc --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPerElementWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24663== Memcheck, a memory error detector +==24663== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24663== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24663== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestPerElementWriter -malloc_debug -malloc_dump -memory_info +==24663== Parent PID: 24036 +==24663== +==24663== +==24663== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24663== Open file descriptor 12: +==24663== at 0x810907D: pipe (pipe.c:29) +==24663== by 0x100C307D: ??? +==24663== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24663== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24663== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24663== by 0x667ED38: PetscInitialize (pinit.c:924) +==24663== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24663== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24663== by 0x118F70: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24663== by 0x113759: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24663== by 0x115E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24663== by 0x115D21: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24663== by 0x116335: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24663== by 0x111E15: main (TestPerElementWriter.cpp:18) +==24663== +==24663== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24663== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24663== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24663== by 0x790E822: ??? +==24663== by 0x790E96F: ??? +==24663== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24663== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24663== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24663== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24663== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24663== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24663== by 0x667ED38: PetscInitialize (pinit.c:924) +==24663== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24663== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24663== by 0x118F70: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24663== by 0x113759: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24663== by 0x115E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24663== by 0x115D21: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24663== by 0x116335: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24663== by 0x111E15: main (TestPerElementWriter.cpp:18) +==24663== +==24663== Open file descriptor 113: +==24663== +==24663== +==24663== Open file descriptor 110: +==24663== +==24663== +==24663== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPerElementWriter_valgrind.txt +==24663== +==24663== +==24663== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24663== +==24663== +==24663== +==24663== HEAP SUMMARY: +==24663== in use at exit: 618,222 bytes in 8,238 blocks +==24663== total heap usage: 52,932 allocs, 44,694 frees, 1,338,983,376 bytes allocated +==24663== +==24663== LEAK SUMMARY: +==24663== definitely lost: 0 bytes in 0 blocks +==24663== indirectly lost: 0 bytes in 0 blocks +==24663== possibly lost: 0 bytes in 0 blocks +==24663== still reachable: 24 bytes in 2 blocks +==24663== suppressed: 618,198 bytes in 8,236 blocks +==24663== Reachable blocks (those to which a pointer was found) are not shown. +==24663== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24663== +==24663== For lists of detected and suppressed errors, rerun with: -s +==24663== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt new file mode 100644 index 000000000..598ebcdc4 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt @@ -0,0 +1,73 @@ +==26148== Memcheck, a memory error detector +==26148== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26148== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26148== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPeriodicNodeBasedCellPopulationParallelMethods -malloc_debug -malloc_dump -memory_info +==26148== Parent PID: 24036 +==26148== +==26148== +==26148== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26148== Open file descriptor 12: +==26148== at 0xF8E007D: pipe (pipe.c:29) +==26148== by 0x196AD07D: ??? +==26148== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26148== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26148== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26148== by 0x10210D38: PetscInitialize (pinit.c:924) +==26148== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26148== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26148== by 0x12B4BA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26148== by 0x1266B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26148== by 0x128CBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26148== by 0x128BBA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26148== by 0x1291CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26148== by 0x124EB5: main (TestPeriodicNodeBasedCellPopulationParallelMethods.cpp:18) +==26148== +==26148== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26148== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==26148== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26148== by 0xF137822: ??? +==26148== by 0xF13796F: ??? +==26148== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26148== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26148== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26148== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26148== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26148== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26148== by 0x10210D38: PetscInitialize (pinit.c:924) +==26148== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26148== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26148== by 0x12B4BA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26148== by 0x1266B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26148== by 0x128CBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26148== by 0x128BBA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26148== by 0x1291CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26148== by 0x124EB5: main (TestPeriodicNodeBasedCellPopulationParallelMethods.cpp:18) +==26148== +==26148== Open file descriptor 113: +==26148== +==26148== +==26148== Open file descriptor 110: +==26148== +==26148== +==26148== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt +==26148== +==26148== +==26148== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26148== +==26148== +==26148== +==26148== HEAP SUMMARY: +==26148== in use at exit: 618,350 bytes in 8,239 blocks +==26148== total heap usage: 53,076 allocs, 44,837 frees, 1,338,902,081 bytes allocated +==26148== +==26148== LEAK SUMMARY: +==26148== definitely lost: 0 bytes in 0 blocks +==26148== indirectly lost: 0 bytes in 0 blocks +==26148== possibly lost: 0 bytes in 0 blocks +==26148== still reachable: 56 bytes in 3 blocks +==26148== suppressed: 618,294 bytes in 8,236 blocks +==26148== Reachable blocks (those to which a pointer was found) are not shown. +==26148== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26148== +==26148== For lists of detected and suppressed errors, rerun with: -s +==26148== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestPeriodicNodesOnlyMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPeriodicNodesOnlyMesh_valgrind.txt new file mode 100644 index 000000000..59367d7e7 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPeriodicNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24588== Memcheck, a memory error detector +==24588== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24588== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24588== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestPeriodicNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==24588== Parent PID: 24036 +==24588== +==24588== +==24588== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24588== Open file descriptor 12: +==24588== at 0x6D7D07D: pipe (pipe.c:29) +==24588== by 0x100C507D: ??? +==24588== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24588== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24588== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24588== by 0x7017D38: PetscInitialize (pinit.c:924) +==24588== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24588== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24588== by 0x1300A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24588== by 0x12AC9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24588== by 0x12DA8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24588== by 0x12D92C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24588== by 0x12DFC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24588== by 0x1290C5: main (TestPeriodicNodesOnlyMesh.cpp:19) +==24588== +==24588== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24588== at 0x6D81A1C: __open_nocancel (open64_nocancel.c:39) +==24588== by 0x6D05BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24588== by 0x6590822: ??? +==24588== by 0x659096F: ??? +==24588== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24588== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24588== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24588== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24588== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24588== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24588== by 0x7017D38: PetscInitialize (pinit.c:924) +==24588== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24588== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24588== by 0x1300A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24588== by 0x12AC9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24588== by 0x12DA8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24588== by 0x12D92C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24588== by 0x12DFC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24588== by 0x1290C5: main (TestPeriodicNodesOnlyMesh.cpp:19) +==24588== +==24588== Open file descriptor 113: +==24588== +==24588== +==24588== Open file descriptor 110: +==24588== +==24588== +==24588== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPeriodicNodesOnlyMesh_valgrind.txt +==24588== +==24588== +==24588== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24588== +==24588== +==24588== +==24588== HEAP SUMMARY: +==24588== in use at exit: 618,222 bytes in 8,238 blocks +==24588== total heap usage: 57,944 allocs, 49,706 frees, 1,341,004,806 bytes allocated +==24588== +==24588== LEAK SUMMARY: +==24588== definitely lost: 0 bytes in 0 blocks +==24588== indirectly lost: 0 bytes in 0 blocks +==24588== possibly lost: 0 bytes in 0 blocks +==24588== still reachable: 24 bytes in 2 blocks +==24588== suppressed: 618,198 bytes in 8,236 blocks +==24588== Reachable blocks (those to which a pointer was found) are not shown. +==24588== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24588== +==24588== For lists of detected and suppressed errors, rerun with: -s +==24588== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestPetscEvents_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPetscEvents_valgrind.txt new file mode 100644 index 000000000..ce9de4672 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPetscEvents_valgrind.txt @@ -0,0 +1,73 @@ +==24208== Memcheck, a memory error detector +==24208== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24208== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24208== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscEvents -malloc_debug -malloc_dump -memory_info +==24208== Parent PID: 24036 +==24208== +==24208== +==24208== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24208== Open file descriptor 12: +==24208== at 0x603207D: pipe (pipe.c:29) +==24208== by 0xAEA507D: ??? +==24208== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24208== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24208== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24208== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24208== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24208== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24208== by 0x110C5A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24208== by 0x10CB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24208== by 0x10ED24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24208== by 0x10EC20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24208== by 0x10F233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24208== by 0x10B375: main (TestPetscEvents.cpp:18) +==24208== +==24208== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24208== at 0x6036A1C: __open_nocancel (open64_nocancel.c:39) +==24208== by 0x5FBABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24208== by 0x5CB3822: ??? +==24208== by 0x5CB396F: ??? +==24208== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24208== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24208== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24208== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24208== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24208== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24208== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24208== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24208== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24208== by 0x110C5A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24208== by 0x10CB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24208== by 0x10ED24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24208== by 0x10EC20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24208== by 0x10F233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24208== by 0x10B375: main (TestPetscEvents.cpp:18) +==24208== +==24208== Open file descriptor 113: +==24208== +==24208== +==24208== Open file descriptor 110: +==24208== +==24208== +==24208== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscEvents_valgrind.txt +==24208== +==24208== +==24208== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24208== +==24208== +==24208== +==24208== HEAP SUMMARY: +==24208== in use at exit: 617,838 bytes in 8,238 blocks +==24208== total heap usage: 44,912 allocs, 36,674 frees, 1,338,158,814 bytes allocated +==24208== +==24208== LEAK SUMMARY: +==24208== definitely lost: 0 bytes in 0 blocks +==24208== indirectly lost: 0 bytes in 0 blocks +==24208== possibly lost: 0 bytes in 0 blocks +==24208== still reachable: 24 bytes in 2 blocks +==24208== suppressed: 617,814 bytes in 8,236 blocks +==24208== Reachable blocks (those to which a pointer was found) are not shown. +==24208== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24208== +==24208== For lists of detected and suppressed errors, rerun with: -s +==24208== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestPetscMatTools_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPetscMatTools_valgrind.txt new file mode 100644 index 000000000..047e8761c --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPetscMatTools_valgrind.txt @@ -0,0 +1,73 @@ +==24365== Memcheck, a memory error detector +==24365== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24365== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24365== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPetscMatTools -malloc_debug -malloc_dump -memory_info +==24365== Parent PID: 24036 +==24365== +==24365== +==24365== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24365== Open file descriptor 12: +==24365== at 0x60C107D: pipe (pipe.c:29) +==24365== by 0xAF3907D: ??? +==24365== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24365== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24365== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24365== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24365== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24365== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24365== by 0x114148: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24365== by 0x10FD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24365== by 0x1121C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24365== by 0x1120BF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24365== by 0x1126D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24365== by 0x10E555: main (TestPetscMatTools.cpp:18) +==24365== +==24365== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24365== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24365== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24365== by 0x5D42822: ??? +==24365== by 0x5D4296F: ??? +==24365== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24365== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24365== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24365== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24365== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24365== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24365== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24365== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24365== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24365== by 0x114148: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24365== by 0x10FD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24365== by 0x1121C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24365== by 0x1120BF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24365== by 0x1126D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24365== by 0x10E555: main (TestPetscMatTools.cpp:18) +==24365== +==24365== Open file descriptor 113: +==24365== +==24365== +==24365== Open file descriptor 110: +==24365== +==24365== +==24365== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscMatTools_valgrind.txt +==24365== +==24365== +==24365== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24365== +==24365== +==24365== +==24365== HEAP SUMMARY: +==24365== in use at exit: 617,854 bytes in 8,238 blocks +==24365== total heap usage: 46,919 allocs, 38,681 frees, 1,338,408,158 bytes allocated +==24365== +==24365== LEAK SUMMARY: +==24365== definitely lost: 0 bytes in 0 blocks +==24365== indirectly lost: 0 bytes in 0 blocks +==24365== possibly lost: 0 bytes in 0 blocks +==24365== still reachable: 24 bytes in 2 blocks +==24365== suppressed: 617,830 bytes in 8,236 blocks +==24365== Reachable blocks (those to which a pointer was found) are not shown. +==24365== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24365== +==24365== For lists of detected and suppressed errors, rerun with: -s +==24365== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestPetscSetup_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPetscSetup_valgrind.txt new file mode 100644 index 000000000..5f8f28ca5 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPetscSetup_valgrind.txt @@ -0,0 +1,73 @@ +==24228== Memcheck, a memory error detector +==24228== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24228== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24228== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscSetup -malloc_debug -malloc_dump -memory_info +==24228== Parent PID: 24036 +==24228== +==24228== +==24228== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24228== Open file descriptor 12: +==24228== at 0x603207D: pipe (pipe.c:29) +==24228== by 0xAEA507D: ??? +==24228== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24228== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24228== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24228== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24228== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24228== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24228== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24228== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24228== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24228== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24228== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24228== by 0x10D8B5: main (TestPetscSetup.cpp:19) +==24228== +==24228== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24228== at 0x6036A1C: __open_nocancel (open64_nocancel.c:39) +==24228== by 0x5FBABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24228== by 0x5CB3822: ??? +==24228== by 0x5CB396F: ??? +==24228== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24228== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24228== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24228== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24228== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24228== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24228== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24228== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24228== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24228== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24228== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24228== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24228== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24228== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24228== by 0x10D8B5: main (TestPetscSetup.cpp:19) +==24228== +==24228== Open file descriptor 113: +==24228== +==24228== +==24228== Open file descriptor 110: +==24228== +==24228== +==24228== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscSetup_valgrind.txt +==24228== +==24228== +==24228== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24228== +==24228== +==24228== +==24228== HEAP SUMMARY: +==24228== in use at exit: 617,838 bytes in 8,238 blocks +==24228== total heap usage: 45,265 allocs, 37,027 frees, 1,338,215,843 bytes allocated +==24228== +==24228== LEAK SUMMARY: +==24228== definitely lost: 0 bytes in 0 blocks +==24228== indirectly lost: 0 bytes in 0 blocks +==24228== possibly lost: 0 bytes in 0 blocks +==24228== still reachable: 24 bytes in 2 blocks +==24228== suppressed: 617,814 bytes in 8,236 blocks +==24228== Reachable blocks (those to which a pointer was found) are not shown. +==24228== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24228== +==24228== For lists of detected and suppressed errors, rerun with: -s +==24228== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestPetscTools2_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPetscTools2_valgrind.txt new file mode 100644 index 000000000..4913f9c63 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPetscTools2_valgrind.txt @@ -0,0 +1,36 @@ +==24230== Memcheck, a memory error detector +==24230== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24230== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24230== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscTools2 -malloc_debug -malloc_dump -memory_info +==24230== Parent PID: 24036 +==24230== +==24230== +==24230== FILE DESCRIPTORS: 7 open (3 std) at exit. +==24230== Open file descriptor 113: +==24230== +==24230== +==24230== Open file descriptor 110: +==24230== +==24230== +==24230== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscTools2_valgrind.txt +==24230== +==24230== +==24230== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24230== +==24230== +==24230== +==24230== HEAP SUMMARY: +==24230== in use at exit: 24 bytes in 2 blocks +==24230== total heap usage: 3,070 allocs, 3,068 frees, 350,741 bytes allocated +==24230== +==24230== LEAK SUMMARY: +==24230== definitely lost: 0 bytes in 0 blocks +==24230== indirectly lost: 0 bytes in 0 blocks +==24230== possibly lost: 0 bytes in 0 blocks +==24230== still reachable: 24 bytes in 2 blocks +==24230== suppressed: 0 bytes in 0 blocks +==24230== Reachable blocks (those to which a pointer was found) are not shown. +==24230== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24230== +==24230== For lists of detected and suppressed errors, rerun with: -s +==24230== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-20_21-41-09/TestPetscTools_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPetscTools_valgrind.txt new file mode 100644 index 000000000..d9a886d78 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPetscTools_valgrind.txt @@ -0,0 +1,73 @@ +==24229== Memcheck, a memory error detector +==24229== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24229== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24229== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscTools -malloc_debug -malloc_dump -memory_info +==24229== Parent PID: 24036 +==24229== +==24229== +==24229== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24229== Open file descriptor 12: +==24229== at 0x616907D: pipe (pipe.c:29) +==24229== by 0xAEA507D: ??? +==24229== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24229== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24229== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24229== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24229== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24229== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24229== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24229== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24229== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24229== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24229== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24229== by 0x110FB5: main (TestPetscTools.cpp:19) +==24229== +==24229== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24229== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24229== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24229== by 0x5CB3822: ??? +==24229== by 0x5CB396F: ??? +==24229== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24229== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24229== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24229== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24229== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24229== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24229== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24229== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24229== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24229== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24229== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24229== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24229== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24229== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24229== by 0x110FB5: main (TestPetscTools.cpp:19) +==24229== +==24229== Open file descriptor 113: +==24229== +==24229== +==24229== Open file descriptor 110: +==24229== +==24229== +==24229== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscTools_valgrind.txt +==24229== +==24229== +==24229== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24229== +==24229== +==24229== +==24229== HEAP SUMMARY: +==24229== in use at exit: 617,838 bytes in 8,238 blocks +==24229== total heap usage: 47,878 allocs, 39,640 frees, 1,338,865,140 bytes allocated +==24229== +==24229== LEAK SUMMARY: +==24229== definitely lost: 0 bytes in 0 blocks +==24229== indirectly lost: 0 bytes in 0 blocks +==24229== possibly lost: 0 bytes in 0 blocks +==24229== still reachable: 24 bytes in 2 blocks +==24229== suppressed: 617,814 bytes in 8,236 blocks +==24229== Reachable blocks (those to which a pointer was found) are not shown. +==24229== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24229== +==24229== For lists of detected and suppressed errors, rerun with: -s +==24229== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestPetscVecTools_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPetscVecTools_valgrind.txt new file mode 100644 index 000000000..b48355dfd --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPetscVecTools_valgrind.txt @@ -0,0 +1,73 @@ +==24366== Memcheck, a memory error detector +==24366== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24366== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24366== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPetscVecTools -malloc_debug -malloc_dump -memory_info +==24366== Parent PID: 24036 +==24366== +==24366== +==24366== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24366== Open file descriptor 12: +==24366== at 0x60C107D: pipe (pipe.c:29) +==24366== by 0xAF3907D: ??? +==24366== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24366== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24366== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24366== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24366== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24366== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24366== by 0x1121EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24366== by 0x10DD73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24366== by 0x11016A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24366== by 0x110065: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24366== by 0x110679: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24366== by 0x10C575: main (TestPetscVecTools.cpp:18) +==24366== +==24366== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24366== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24366== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24366== by 0x5D42822: ??? +==24366== by 0x5D4296F: ??? +==24366== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24366== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24366== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24366== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24366== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24366== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24366== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24366== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24366== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24366== by 0x1121EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24366== by 0x10DD73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24366== by 0x11016A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24366== by 0x110065: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24366== by 0x110679: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24366== by 0x10C575: main (TestPetscVecTools.cpp:18) +==24366== +==24366== Open file descriptor 113: +==24366== +==24366== +==24366== Open file descriptor 110: +==24366== +==24366== +==24366== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscVecTools_valgrind.txt +==24366== +==24366== +==24366== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24366== +==24366== +==24366== +==24366== HEAP SUMMARY: +==24366== in use at exit: 617,854 bytes in 8,238 blocks +==24366== total heap usage: 45,463 allocs, 37,225 frees, 1,338,258,192 bytes allocated +==24366== +==24366== LEAK SUMMARY: +==24366== definitely lost: 0 bytes in 0 blocks +==24366== indirectly lost: 0 bytes in 0 blocks +==24366== possibly lost: 0 bytes in 0 blocks +==24366== still reachable: 24 bytes in 2 blocks +==24366== suppressed: 617,830 bytes in 8,236 blocks +==24366== Reachable blocks (those to which a pointer was found) are not shown. +==24366== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24366== +==24366== For lists of detected and suppressed errors, rerun with: -s +==24366== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestPlaneStimulusCellFactory_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPlaneStimulusCellFactory_valgrind.txt new file mode 100644 index 000000000..f8a83f9ef --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPlaneStimulusCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==43720== Memcheck, a memory error detector +==43720== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43720== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43720== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPlaneStimulusCellFactory -malloc_debug -malloc_dump -memory_info +==43720== Parent PID: 24036 +==43720== +==43720== +==43720== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43720== Open file descriptor 12: +==43720== at 0xBC0507D: pipe (pipe.c:29) +==43720== by 0x1432407D: ??? +==43720== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43720== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43720== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43720== by 0xA160D38: PetscInitialize (pinit.c:924) +==43720== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43720== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43720== by 0x12063D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43720== by 0x11B96D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43720== by 0x11E212: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43720== by 0x11E0B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43720== by 0x11E749: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43720== by 0x119D95: main (TestPlaneStimulusCellFactory.cpp:19) +==43720== +==43720== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43720== at 0xBC09A1C: __open_nocancel (open64_nocancel.c:39) +==43720== by 0xBB8DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43720== by 0xB3F0822: ??? +==43720== by 0xB3F096F: ??? +==43720== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43720== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43720== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43720== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43720== by 0xB4F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43720== by 0xB48CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43720== by 0xA160D38: PetscInitialize (pinit.c:924) +==43720== by 0xA0371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43720== by 0xA037227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43720== by 0x12063D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43720== by 0x11B96D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43720== by 0x11E212: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43720== by 0x11E0B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43720== by 0x11E749: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43720== by 0x119D95: main (TestPlaneStimulusCellFactory.cpp:19) +==43720== +==43720== Open file descriptor 113: +==43720== +==43720== +==43720== Open file descriptor 110: +==43720== +==43720== +==43720== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPlaneStimulusCellFactory_valgrind.txt +==43720== +==43720== +==43720== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43720== +==43720== +==43720== +==43720== HEAP SUMMARY: +==43720== in use at exit: 618,334 bytes in 8,238 blocks +==43720== total heap usage: 82,000 allocs, 73,762 frees, 1,343,192,669 bytes allocated +==43720== +==43720== LEAK SUMMARY: +==43720== definitely lost: 0 bytes in 0 blocks +==43720== indirectly lost: 0 bytes in 0 blocks +==43720== possibly lost: 0 bytes in 0 blocks +==43720== still reachable: 24 bytes in 2 blocks +==43720== suppressed: 618,310 bytes in 8,236 blocks +==43720== Reachable blocks (those to which a pointer was found) are not shown. +==43720== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43720== +==43720== For lists of detected and suppressed errors, rerun with: -s +==43720== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestPostProcessingWriter_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPostProcessingWriter_valgrind.txt new file mode 100644 index 000000000..30ddd45f6 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPostProcessingWriter_valgrind.txt @@ -0,0 +1,73 @@ +==43670== Memcheck, a memory error detector +==43670== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43670== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43670== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPostProcessingWriter -malloc_debug -malloc_dump -memory_info +==43670== Parent PID: 24036 +==43670== +==43670== +==43670== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43670== Open file descriptor 12: +==43670== at 0xBF6D07D: pipe (pipe.c:29) +==43670== by 0x1432407D: ??? +==43670== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43670== by 0xC2EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43670== by 0xC283D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43670== by 0xA601D38: PetscInitialize (pinit.c:924) +==43670== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43670== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43670== by 0x127348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43670== by 0x1210D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43670== by 0x123BD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43670== by 0x123AD3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43670== by 0x1240E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43670== by 0x11F8D5: main (TestPostProcessingWriter.cpp:18) +==43670== +==43670== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43670== at 0xBF71A1C: __open_nocancel (open64_nocancel.c:39) +==43670== by 0xBEF5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43670== by 0xB891822: ??? +==43670== by 0xB89196F: ??? +==43670== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43670== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43670== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43670== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43670== by 0xC2EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43670== by 0xC283D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43670== by 0xA601D38: PetscInitialize (pinit.c:924) +==43670== by 0xA4D61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43670== by 0xA4D6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43670== by 0x127348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43670== by 0x1210D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43670== by 0x123BD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43670== by 0x123AD3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43670== by 0x1240E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43670== by 0x11F8D5: main (TestPostProcessingWriter.cpp:18) +==43670== +==43670== Open file descriptor 113: +==43670== +==43670== +==43670== Open file descriptor 110: +==43670== +==43670== +==43670== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPostProcessingWriter_valgrind.txt +==43670== +==43670== +==43670== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43670== +==43670== +==43670== +==43670== HEAP SUMMARY: +==43670== in use at exit: 618,743 bytes in 8,244 blocks +==43670== total heap usage: 10,863,091 allocs, 10,854,847 frees, 11,717,758,941 bytes allocated +==43670== +==43670== LEAK SUMMARY: +==43670== definitely lost: 0 bytes in 0 blocks +==43670== indirectly lost: 0 bytes in 0 blocks +==43670== possibly lost: 0 bytes in 0 blocks +==43670== still reachable: 24 bytes in 2 blocks +==43670== suppressed: 618,719 bytes in 8,242 blocks +==43670== Reachable blocks (those to which a pointer was found) are not shown. +==43670== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43670== +==43670== For lists of detected and suppressed errors, rerun with: -s +==43670== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 31) diff --git a/log-files/2024-09-20_21-41-09/TestPottsBasedCellPopulation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPottsBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..5eaa79ca9 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPottsBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26155== Memcheck, a memory error detector +==26155== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26155== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26155== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26155== Parent PID: 24036 +==26155== +==26155== +==26155== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26155== Open file descriptor 12: +==26155== at 0x10DD907D: pipe (pipe.c:29) +==26155== by 0x196AD07D: ??? +==26155== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26155== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26155== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26155== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26155== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26155== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26155== by 0x16AB57: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26155== by 0x162E49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26155== by 0x166190: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26155== by 0x166030: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26155== by 0x1666C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26155== by 0x161265: main (TestPottsBasedCellPopulation.cpp:19) +==26155== +==26155== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26155== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==26155== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26155== by 0xF137822: ??? +==26155== by 0xF13796F: ??? +==26155== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26155== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26155== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26155== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26155== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26155== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26155== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26155== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26155== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26155== by 0x16AB57: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26155== by 0x162E49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26155== by 0x166190: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26155== by 0x166030: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26155== by 0x1666C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26155== by 0x161265: main (TestPottsBasedCellPopulation.cpp:19) +==26155== +==26155== Open file descriptor 113: +==26155== +==26155== +==26155== Open file descriptor 110: +==26155== +==26155== +==26155== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsBasedCellPopulation_valgrind.txt +==26155== +==26155== +==26155== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26155== +==26155== +==26155== +==26155== HEAP SUMMARY: +==26155== in use at exit: 618,350 bytes in 8,239 blocks +==26155== total heap usage: 74,949 allocs, 66,710 frees, 1,343,982,864 bytes allocated +==26155== +==26155== LEAK SUMMARY: +==26155== definitely lost: 0 bytes in 0 blocks +==26155== indirectly lost: 0 bytes in 0 blocks +==26155== possibly lost: 0 bytes in 0 blocks +==26155== still reachable: 56 bytes in 3 blocks +==26155== suppressed: 618,294 bytes in 8,236 blocks +==26155== Reachable blocks (those to which a pointer was found) are not shown. +==26155== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26155== +==26155== For lists of detected and suppressed errors, rerun with: -s +==26155== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestPottsBasedCryptSimulation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPottsBasedCryptSimulation_valgrind.txt new file mode 100644 index 000000000..a2eb0e439 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPottsBasedCryptSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==40837== Memcheck, a memory error detector +==40837== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40837== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40837== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestPottsBasedCryptSimulation -malloc_debug -malloc_dump -memory_info +==40837== Parent PID: 24036 +==40837== +==40837== +==40837== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40837== Open file descriptor 12: +==40837== at 0x110B907D: pipe (pipe.c:29) +==40837== by 0x1B36F07D: ??? +==40837== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40837== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40837== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40837== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40837== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40837== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40837== by 0x122076: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40837== by 0x11D6B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40837== by 0x11FAA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40837== by 0x11F9A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40837== by 0x11FFB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40837== by 0x11BEB5: main (TestPottsBasedCryptSimulation.cpp:18) +==40837== +==40837== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40837== at 0x110BDA1C: __open_nocancel (open64_nocancel.c:39) +==40837== by 0x11041BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40837== by 0x109F7822: ??? +==40837== by 0x109F796F: ??? +==40837== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40837== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40837== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40837== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40837== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40837== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40837== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40837== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40837== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40837== by 0x122076: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40837== by 0x11D6B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40837== by 0x11FAA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40837== by 0x11F9A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40837== by 0x11FFB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40837== by 0x11BEB5: main (TestPottsBasedCryptSimulation.cpp:18) +==40837== +==40837== Open file descriptor 113: +==40837== +==40837== +==40837== Open file descriptor 110: +==40837== +==40837== +==40837== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsBasedCryptSimulation_valgrind.txt +==40837== +==40837== +==40837== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40837== +==40837== +==40837== +==40837== HEAP SUMMARY: +==40837== in use at exit: 618,375 bytes in 8,236 blocks +==40837== total heap usage: 46,840,253 allocs, 46,832,017 frees, 5,592,610,555 bytes allocated +==40837== +==40837== LEAK SUMMARY: +==40837== definitely lost: 0 bytes in 0 blocks +==40837== indirectly lost: 0 bytes in 0 blocks +==40837== possibly lost: 0 bytes in 0 blocks +==40837== still reachable: 136 bytes in 4 blocks +==40837== suppressed: 618,239 bytes in 8,232 blocks +==40837== Reachable blocks (those to which a pointer was found) are not shown. +==40837== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40837== +==40837== For lists of detected and suppressed errors, rerun with: -s +==40837== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestPottsElement_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPottsElement_valgrind.txt new file mode 100644 index 000000000..adbe10dcb --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPottsElement_valgrind.txt @@ -0,0 +1,73 @@ +==25755== Memcheck, a memory error detector +==25755== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25755== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25755== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsElement -malloc_debug -malloc_dump -memory_info +==25755== Parent PID: 24036 +==25755== +==25755== +==25755== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25755== Open file descriptor 12: +==25755== at 0xF4B407D: pipe (pipe.c:29) +==25755== by 0x196AD07D: ??? +==25755== by 0x14C664CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25755== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25755== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25755== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25755== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25755== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25755== by 0x11A5B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25755== by 0x115A6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25755== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25755== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25755== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25755== by 0x113E95: main (TestPottsElement.cpp:19) +==25755== +==25755== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25755== at 0xF4B8A1C: __open_nocancel (open64_nocancel.c:39) +==25755== by 0xF43CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25755== by 0xF137822: ??? +==25755== by 0xF13796F: ??? +==25755== by 0x14D0B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25755== by 0x14D0B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25755== by 0x14CC1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25755== by 0x14C662DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25755== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25755== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25755== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25755== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25755== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25755== by 0x11A5B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25755== by 0x115A6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25755== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25755== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25755== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25755== by 0x113E95: main (TestPottsElement.cpp:19) +==25755== +==25755== Open file descriptor 113: +==25755== +==25755== +==25755== Open file descriptor 110: +==25755== +==25755== +==25755== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsElement_valgrind.txt +==25755== +==25755== +==25755== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25755== +==25755== +==25755== +==25755== HEAP SUMMARY: +==25755== in use at exit: 618,318 bytes in 8,238 blocks +==25755== total heap usage: 53,130 allocs, 44,892 frees, 1,338,896,769 bytes allocated +==25755== +==25755== LEAK SUMMARY: +==25755== definitely lost: 0 bytes in 0 blocks +==25755== indirectly lost: 0 bytes in 0 blocks +==25755== possibly lost: 0 bytes in 0 blocks +==25755== still reachable: 24 bytes in 2 blocks +==25755== suppressed: 618,294 bytes in 8,236 blocks +==25755== Reachable blocks (those to which a pointer was found) are not shown. +==25755== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25755== +==25755== For lists of detected and suppressed errors, rerun with: -s +==25755== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-09-20_21-41-09/TestPottsMeshGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPottsMeshGenerator_valgrind.txt new file mode 100644 index 000000000..41a200b9b --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPottsMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==25800== Memcheck, a memory error detector +==25800== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25800== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25800== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshGenerator -malloc_debug -malloc_dump -memory_info +==25800== Parent PID: 24036 +==25800== +==25800== +==25800== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25800== Open file descriptor 12: +==25800== at 0xF4B407D: pipe (pipe.c:29) +==25800== by 0x196AD07D: ??? +==25800== by 0x14C664CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25800== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25800== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25800== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25800== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25800== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25800== by 0x118EF2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25800== by 0x1145AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25800== by 0x116DAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25800== by 0x116C4D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25800== by 0x1172E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25800== by 0x1129D5: main (TestPottsMeshGenerator.cpp:19) +==25800== +==25800== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25800== at 0xF4B8A1C: __open_nocancel (open64_nocancel.c:39) +==25800== by 0xF43CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25800== by 0xF137822: ??? +==25800== by 0xF13796F: ??? +==25800== by 0x14D0B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25800== by 0x14D0B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25800== by 0x14CC1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25800== by 0x14C662DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25800== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25800== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25800== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25800== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25800== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25800== by 0x118EF2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25800== by 0x1145AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25800== by 0x116DAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25800== by 0x116C4D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25800== by 0x1172E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25800== by 0x1129D5: main (TestPottsMeshGenerator.cpp:19) +==25800== +==25800== Open file descriptor 113: +==25800== +==25800== +==25800== Open file descriptor 110: +==25800== +==25800== +==25800== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshGenerator_valgrind.txt +==25800== +==25800== +==25800== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25800== +==25800== +==25800== +==25800== HEAP SUMMARY: +==25800== in use at exit: 618,318 bytes in 8,238 blocks +==25800== total heap usage: 154,741 allocs, 146,503 frees, 1,343,497,112 bytes allocated +==25800== +==25800== LEAK SUMMARY: +==25800== definitely lost: 0 bytes in 0 blocks +==25800== indirectly lost: 0 bytes in 0 blocks +==25800== possibly lost: 0 bytes in 0 blocks +==25800== still reachable: 24 bytes in 2 blocks +==25800== suppressed: 618,294 bytes in 8,236 blocks +==25800== Reachable blocks (those to which a pointer was found) are not shown. +==25800== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25800== +==25800== For lists of detected and suppressed errors, rerun with: -s +==25800== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestPottsMeshReader_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPottsMeshReader_valgrind.txt new file mode 100644 index 000000000..0b34f148f --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPottsMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==25801== Memcheck, a memory error detector +==25801== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25801== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25801== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshReader -malloc_debug -malloc_dump -memory_info +==25801== Parent PID: 24036 +==25801== +==25801== +==25801== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25801== Open file descriptor 12: +==25801== at 0xF4B407D: pipe (pipe.c:29) +==25801== by 0x196AD07D: ??? +==25801== by 0x14C664CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25801== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25801== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25801== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25801== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25801== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25801== by 0x118F5E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25801== by 0x11450D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25801== by 0x116FE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25801== by 0x116E80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25801== by 0x117517: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25801== by 0x112935: main (TestPottsMeshReader.cpp:19) +==25801== +==25801== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25801== at 0xF4B8A1C: __open_nocancel (open64_nocancel.c:39) +==25801== by 0xF43CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25801== by 0xF137822: ??? +==25801== by 0xF13796F: ??? +==25801== by 0x14D0B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25801== by 0x14D0B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25801== by 0x14CC1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25801== by 0x14C662DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25801== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25801== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25801== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25801== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25801== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25801== by 0x118F5E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25801== by 0x11450D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25801== by 0x116FE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25801== by 0x116E80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25801== by 0x117517: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25801== by 0x112935: main (TestPottsMeshReader.cpp:19) +==25801== +==25801== Open file descriptor 113: +==25801== +==25801== +==25801== Open file descriptor 110: +==25801== +==25801== +==25801== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshReader_valgrind.txt +==25801== +==25801== +==25801== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25801== +==25801== +==25801== +==25801== HEAP SUMMARY: +==25801== in use at exit: 618,318 bytes in 8,238 blocks +==25801== total heap usage: 53,376 allocs, 45,138 frees, 1,339,153,897 bytes allocated +==25801== +==25801== LEAK SUMMARY: +==25801== definitely lost: 0 bytes in 0 blocks +==25801== indirectly lost: 0 bytes in 0 blocks +==25801== possibly lost: 0 bytes in 0 blocks +==25801== still reachable: 24 bytes in 2 blocks +==25801== suppressed: 618,294 bytes in 8,236 blocks +==25801== Reachable blocks (those to which a pointer was found) are not shown. +==25801== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25801== +==25801== For lists of detected and suppressed errors, rerun with: -s +==25801== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestPottsMeshWriter_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPottsMeshWriter_valgrind.txt new file mode 100644 index 000000000..1e6c1c94b --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPottsMeshWriter_valgrind.txt @@ -0,0 +1,73 @@ +==25810== Memcheck, a memory error detector +==25810== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25810== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25810== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshWriter -malloc_debug -malloc_dump -memory_info +==25810== Parent PID: 24036 +==25810== +==25810== +==25810== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25810== Open file descriptor 12: +==25810== at 0x10CB007D: pipe (pipe.c:29) +==25810== by 0x196AD07D: ??? +==25810== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25810== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25810== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25810== by 0xF225D38: PetscInitialize (pinit.c:924) +==25810== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25810== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25810== by 0x11BA1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25810== by 0x1156B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25810== by 0x117F02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25810== by 0x117DFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25810== by 0x118411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25810== by 0x113EB5: main (TestPottsMeshWriter.cpp:18) +==25810== +==25810== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25810== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==25810== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25810== by 0x104B5822: ??? +==25810== by 0x104B596F: ??? +==25810== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25810== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25810== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25810== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25810== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25810== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25810== by 0xF225D38: PetscInitialize (pinit.c:924) +==25810== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25810== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25810== by 0x11BA1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25810== by 0x1156B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25810== by 0x117F02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25810== by 0x117DFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25810== by 0x118411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25810== by 0x113EB5: main (TestPottsMeshWriter.cpp:18) +==25810== +==25810== Open file descriptor 113: +==25810== +==25810== +==25810== Open file descriptor 110: +==25810== +==25810== +==25810== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshWriter_valgrind.txt +==25810== +==25810== +==25810== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25810== +==25810== +==25810== +==25810== HEAP SUMMARY: +==25810== in use at exit: 618,318 bytes in 8,238 blocks +==25810== total heap usage: 54,555 allocs, 46,317 frees, 1,339,582,495 bytes allocated +==25810== +==25810== LEAK SUMMARY: +==25810== definitely lost: 0 bytes in 0 blocks +==25810== indirectly lost: 0 bytes in 0 blocks +==25810== possibly lost: 0 bytes in 0 blocks +==25810== still reachable: 24 bytes in 2 blocks +==25810== suppressed: 618,294 bytes in 8,236 blocks +==25810== Reachable blocks (those to which a pointer was found) are not shown. +==25810== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25810== +==25810== For lists of detected and suppressed errors, rerun with: -s +==25810== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestPottsMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPottsMesh_valgrind.txt new file mode 100644 index 000000000..e932e402d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPottsMesh_valgrind.txt @@ -0,0 +1,73 @@ +==25764== Memcheck, a memory error detector +==25764== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25764== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25764== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMesh -malloc_debug -malloc_dump -memory_info +==25764== Parent PID: 24036 +==25764== +==25764== +==25764== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25764== Open file descriptor 12: +==25764== at 0xF4F607D: pipe (pipe.c:29) +==25764== by 0x196AD07D: ??? +==25764== by 0x14C664CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25764== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25764== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25764== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25764== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25764== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25764== by 0x1387B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25764== by 0x13323D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25764== by 0x136272: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25764== by 0x136112: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25764== by 0x1367A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25764== by 0x131665: main (TestPottsMesh.cpp:19) +==25764== +==25764== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25764== at 0xF4FAA1C: __open_nocancel (open64_nocancel.c:39) +==25764== by 0xF47EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25764== by 0xF137822: ??? +==25764== by 0xF13796F: ??? +==25764== by 0x14D0B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25764== by 0x14D0B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25764== by 0x14CC1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25764== by 0x14C662DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25764== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25764== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25764== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25764== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25764== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25764== by 0x1387B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25764== by 0x13323D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25764== by 0x136272: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25764== by 0x136112: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25764== by 0x1367A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25764== by 0x131665: main (TestPottsMesh.cpp:19) +==25764== +==25764== Open file descriptor 113: +==25764== +==25764== +==25764== Open file descriptor 110: +==25764== +==25764== +==25764== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMesh_valgrind.txt +==25764== +==25764== +==25764== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25764== +==25764== +==25764== +==25764== HEAP SUMMARY: +==25764== in use at exit: 618,318 bytes in 8,238 blocks +==25764== total heap usage: 79,293 allocs, 71,055 frees, 1,340,374,069 bytes allocated +==25764== +==25764== LEAK SUMMARY: +==25764== definitely lost: 0 bytes in 0 blocks +==25764== indirectly lost: 0 bytes in 0 blocks +==25764== possibly lost: 0 bytes in 0 blocks +==25764== still reachable: 24 bytes in 2 blocks +==25764== suppressed: 618,294 bytes in 8,236 blocks +==25764== Reachable blocks (those to which a pointer was found) are not shown. +==25764== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25764== +==25764== For lists of detected and suppressed errors, rerun with: -s +==25764== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestPottsUpdateRules_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPottsUpdateRules_valgrind.txt new file mode 100644 index 000000000..ee931b3f6 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPottsUpdateRules_valgrind.txt @@ -0,0 +1,73 @@ +==26156== Memcheck, a memory error detector +==26156== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26156== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26156== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsUpdateRules -malloc_debug -malloc_dump -memory_info +==26156== Parent PID: 24036 +==26156== +==26156== +==26156== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26156== Open file descriptor 12: +==26156== at 0xF09707D: pipe (pipe.c:29) +==26156== by 0x196AC07D: ??? +==26156== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26156== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26156== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26156== by 0xD62FD38: PetscInitialize (pinit.c:924) +==26156== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26156== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26156== by 0x133C55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26156== by 0x12C93D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26156== by 0x12F6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26156== by 0x12F55E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26156== by 0x12FBF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26156== by 0x12AD65: main (TestPottsUpdateRules.cpp:19) +==26156== +==26156== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26156== at 0xF09BA1C: __open_nocancel (open64_nocancel.c:39) +==26156== by 0xF01FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26156== by 0xD4DA822: ??? +==26156== by 0xD4DA96F: ??? +==26156== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26156== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26156== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26156== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26156== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26156== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26156== by 0xD62FD38: PetscInitialize (pinit.c:924) +==26156== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26156== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26156== by 0x133C55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26156== by 0x12C93D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26156== by 0x12F6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26156== by 0x12F55E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26156== by 0x12FBF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26156== by 0x12AD65: main (TestPottsUpdateRules.cpp:19) +==26156== +==26156== Open file descriptor 113: +==26156== +==26156== +==26156== Open file descriptor 110: +==26156== +==26156== +==26156== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsUpdateRules_valgrind.txt +==26156== +==26156== +==26156== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26156== +==26156== +==26156== +==26156== HEAP SUMMARY: +==26156== in use at exit: 618,350 bytes in 8,239 blocks +==26156== total heap usage: 67,527 allocs, 59,288 frees, 1,339,983,222 bytes allocated +==26156== +==26156== LEAK SUMMARY: +==26156== definitely lost: 0 bytes in 0 blocks +==26156== indirectly lost: 0 bytes in 0 blocks +==26156== possibly lost: 0 bytes in 0 blocks +==26156== still reachable: 56 bytes in 3 blocks +==26156== suppressed: 618,294 bytes in 8,236 blocks +==26156== Reachable blocks (those to which a pointer was found) are not shown. +==26156== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26156== +==26156== For lists of detected and suppressed errors, rerun with: -s +==26156== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestProblemDefinitions_valgrind.txt b/log-files/2024-09-20_21-41-09/TestProblemDefinitions_valgrind.txt new file mode 100644 index 000000000..62108c824 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestProblemDefinitions_valgrind.txt @@ -0,0 +1,73 @@ +==25337== Memcheck, a memory error detector +==25337== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25337== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25337== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestProblemDefinitions -malloc_debug -malloc_dump -memory_info +==25337== Parent PID: 24036 +==25337== +==25337== +==25337== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25337== Open file descriptor 12: +==25337== at 0x6EBB07D: pipe (pipe.c:29) +==25337== by 0x106D707D: ??? +==25337== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25337== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25337== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25337== by 0x74F2D38: PetscInitialize (pinit.c:924) +==25337== by 0x66D71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25337== by 0x66D7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25337== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25337== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25337== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25337== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25337== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25337== by 0x124F95: main (TestProblemDefinitions.cpp:19) +==25337== +==25337== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25337== at 0x6EBFA1C: __open_nocancel (open64_nocancel.c:39) +==25337== by 0x6E43BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25337== by 0x6712822: ??? +==25337== by 0x671296F: ??? +==25337== by 0xC0846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25337== by 0xC084938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25337== by 0xC03A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25337== by 0xBFDF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25337== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25337== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25337== by 0x74F2D38: PetscInitialize (pinit.c:924) +==25337== by 0x66D71D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25337== by 0x66D7227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25337== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25337== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25337== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25337== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25337== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25337== by 0x124F95: main (TestProblemDefinitions.cpp:19) +==25337== +==25337== Open file descriptor 113: +==25337== +==25337== +==25337== Open file descriptor 110: +==25337== +==25337== +==25337== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestProblemDefinitions_valgrind.txt +==25337== +==25337== +==25337== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25337== +==25337== +==25337== +==25337== HEAP SUMMARY: +==25337== in use at exit: 618,270 bytes in 8,238 blocks +==25337== total heap usage: 48,562 allocs, 40,324 frees, 1,338,503,856 bytes allocated +==25337== +==25337== LEAK SUMMARY: +==25337== definitely lost: 0 bytes in 0 blocks +==25337== indirectly lost: 0 bytes in 0 blocks +==25337== possibly lost: 0 bytes in 0 blocks +==25337== still reachable: 24 bytes in 2 blocks +==25337== suppressed: 618,246 bytes in 8,236 blocks +==25337== Reachable blocks (those to which a pointer was found) are not shown. +==25337== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25337== +==25337== For lists of detected and suppressed errors, rerun with: -s +==25337== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestProgressReporter_valgrind.txt b/log-files/2024-09-20_21-41-09/TestProgressReporter_valgrind.txt new file mode 100644 index 000000000..012f82994 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestProgressReporter_valgrind.txt @@ -0,0 +1,73 @@ +==24231== Memcheck, a memory error detector +==24231== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24231== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24231== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestProgressReporter -malloc_debug -malloc_dump -memory_info +==24231== Parent PID: 24036 +==24231== +==24231== +==24231== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24231== Open file descriptor 12: +==24231== at 0x616907D: pipe (pipe.c:29) +==24231== by 0xAEA507D: ??? +==24231== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24231== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24231== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24231== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24231== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24231== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24231== by 0x118E11: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24231== by 0x11280D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24231== by 0x1150D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24231== by 0x114F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24231== by 0x11560B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24231== by 0x110C35: main (TestProgressReporter.cpp:19) +==24231== +==24231== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24231== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24231== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24231== by 0x5CB3822: ??? +==24231== by 0x5CB396F: ??? +==24231== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24231== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24231== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24231== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24231== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24231== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24231== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24231== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24231== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24231== by 0x118E11: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24231== by 0x11280D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24231== by 0x1150D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24231== by 0x114F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24231== by 0x11560B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24231== by 0x110C35: main (TestProgressReporter.cpp:19) +==24231== +==24231== Open file descriptor 113: +==24231== +==24231== +==24231== Open file descriptor 110: +==24231== +==24231== +==24231== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestProgressReporter_valgrind.txt +==24231== +==24231== +==24231== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24231== +==24231== +==24231== +==24231== HEAP SUMMARY: +==24231== in use at exit: 617,838 bytes in 8,238 blocks +==24231== total heap usage: 45,067 allocs, 36,829 frees, 1,338,282,463 bytes allocated +==24231== +==24231== LEAK SUMMARY: +==24231== definitely lost: 0 bytes in 0 blocks +==24231== indirectly lost: 0 bytes in 0 blocks +==24231== possibly lost: 0 bytes in 0 blocks +==24231== still reachable: 24 bytes in 2 blocks +==24231== suppressed: 617,814 bytes in 8,236 blocks +==24231== Reachable blocks (those to which a pointer was found) are not shown. +==24231== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24231== +==24231== For lists of detected and suppressed errors, rerun with: -s +==24231== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestPropagationPropertiesCalculator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPropagationPropertiesCalculator_valgrind.txt new file mode 100644 index 000000000..10c4b99b6 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPropagationPropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==43680== Memcheck, a memory error detector +==43680== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43680== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43680== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPropagationPropertiesCalculator -malloc_debug -malloc_dump -memory_info +==43680== Parent PID: 24036 +==43680== +==43680== +==43680== FILE DESCRIPTORS: 7 open (3 std) at exit. +==43680== Open file descriptor 113: +==43680== +==43680== +==43680== Open file descriptor 110: +==43680== +==43680== +==43680== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPropagationPropertiesCalculator_valgrind.txt +==43680== +==43680== +==43680== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43680== +==43680== +==43680== +==43680== HEAP SUMMARY: +==43680== in use at exit: 24 bytes in 2 blocks +==43680== total heap usage: 14,997,641 allocs, 14,997,639 frees, 9,167,962,367 bytes allocated +==43680== +==43680== LEAK SUMMARY: +==43680== definitely lost: 0 bytes in 0 blocks +==43680== indirectly lost: 0 bytes in 0 blocks +==43680== possibly lost: 0 bytes in 0 blocks +==43680== still reachable: 24 bytes in 2 blocks +==43680== suppressed: 0 bytes in 0 blocks +==43680== Reachable blocks (those to which a pointer was found) are not shown. +==43680== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43680== +==43680== For lists of detected and suppressed errors, rerun with: -s +==43680== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-20_21-41-09/TestPseudoEcgCalculator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestPseudoEcgCalculator_valgrind.txt new file mode 100644 index 000000000..c710fd8fc --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestPseudoEcgCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==43685== Memcheck, a memory error detector +==43685== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43685== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43685== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPseudoEcgCalculator -malloc_debug -malloc_dump -memory_info +==43685== Parent PID: 24036 +==43685== +==43685== +==43685== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43685== Open file descriptor 12: +==43685== at 0xBB4107D: pipe (pipe.c:29) +==43685== by 0x1432407D: ??? +==43685== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43685== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43685== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43685== by 0xA1D3D38: PetscInitialize (pinit.c:924) +==43685== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43685== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43685== by 0x1233A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43685== by 0x11E38D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43685== by 0x120E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43685== by 0x120CC6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43685== by 0x12135D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43685== by 0x11C615: main (TestPseudoEcgCalculator.cpp:19) +==43685== +==43685== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43685== at 0xBB45A1C: __open_nocancel (open64_nocancel.c:39) +==43685== by 0xBAC9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43685== by 0xB463822: ??? +==43685== by 0xB46396F: ??? +==43685== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43685== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43685== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43685== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43685== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43685== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43685== by 0xA1D3D38: PetscInitialize (pinit.c:924) +==43685== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43685== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43685== by 0x1233A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43685== by 0x11E38D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43685== by 0x120E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43685== by 0x120CC6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43685== by 0x12135D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43685== by 0x11C615: main (TestPseudoEcgCalculator.cpp:19) +==43685== +==43685== Open file descriptor 113: +==43685== +==43685== +==43685== Open file descriptor 110: +==43685== +==43685== +==43685== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPseudoEcgCalculator_valgrind.txt +==43685== +==43685== +==43685== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43685== +==43685== +==43685== +==43685== HEAP SUMMARY: +==43685== in use at exit: 618,814 bytes in 8,248 blocks +==43685== total heap usage: 282,960 allocs, 274,712 frees, 1,373,756,381 bytes allocated +==43685== +==43685== LEAK SUMMARY: +==43685== definitely lost: 0 bytes in 0 blocks +==43685== indirectly lost: 0 bytes in 0 blocks +==43685== possibly lost: 0 bytes in 0 blocks +==43685== still reachable: 24 bytes in 2 blocks +==43685== suppressed: 618,790 bytes in 8,246 blocks +==43685== Reachable blocks (those to which a pointer was found) are not shown. +==43685== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43685== +==43685== For lists of detected and suppressed errors, rerun with: -s +==43685== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 38) diff --git a/log-files/2024-09-20_21-41-09/TestQuadraticBasisFunction_valgrind.txt b/log-files/2024-09-20_21-41-09/TestQuadraticBasisFunction_valgrind.txt new file mode 100644 index 000000000..248d3e2c1 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestQuadraticBasisFunction_valgrind.txt @@ -0,0 +1,73 @@ +==25263== Memcheck, a memory error detector +==25263== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25263== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25263== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestQuadraticBasisFunction -malloc_debug -malloc_dump -memory_info +==25263== Parent PID: 24036 +==25263== +==25263== +==25263== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25263== Open file descriptor 12: +==25263== at 0x6CAC07D: pipe (pipe.c:29) +==25263== by 0x104D507D: ??? +==25263== by 0xC31D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25263== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25263== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25263== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25263== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25263== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25263== by 0x12166A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25263== by 0x11D0F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25263== by 0x11F5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25263== by 0x11F4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25263== by 0x11FB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25263== by 0x11B8F5: main (TestQuadraticBasisFunction.cpp:18) +==25263== +==25263== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25263== at 0x6CB0A1C: __open_nocancel (open64_nocancel.c:39) +==25263== by 0x6C34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25263== by 0x692F822: ??? +==25263== by 0x692F96F: ??? +==25263== by 0xC3C26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25263== by 0xC3C2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25263== by 0xC378922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25263== by 0xC31D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25263== by 0x8720418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25263== by 0x86B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25263== by 0x6FFBD38: PetscInitialize (pinit.c:924) +==25263== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25263== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25263== by 0x12166A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25263== by 0x11D0F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25263== by 0x11F5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25263== by 0x11F4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25263== by 0x11FB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25263== by 0x11B8F5: main (TestQuadraticBasisFunction.cpp:18) +==25263== +==25263== Open file descriptor 113: +==25263== +==25263== +==25263== Open file descriptor 110: +==25263== +==25263== +==25263== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraticBasisFunction_valgrind.txt +==25263== +==25263== +==25263== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25263== +==25263== +==25263== +==25263== HEAP SUMMARY: +==25263== in use at exit: 618,254 bytes in 8,238 blocks +==25263== total heap usage: 47,377 allocs, 39,139 frees, 1,338,388,431 bytes allocated +==25263== +==25263== LEAK SUMMARY: +==25263== definitely lost: 0 bytes in 0 blocks +==25263== indirectly lost: 0 bytes in 0 blocks +==25263== possibly lost: 0 bytes in 0 blocks +==25263== still reachable: 24 bytes in 2 blocks +==25263== suppressed: 618,230 bytes in 8,236 blocks +==25263== Reachable blocks (those to which a pointer was found) are not shown. +==25263== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25263== +==25263== For lists of detected and suppressed errors, rerun with: -s +==25263== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestQuadraticMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestQuadraticMesh_valgrind.txt new file mode 100644 index 000000000..c29953cbf --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestQuadraticMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24500== Memcheck, a memory error detector +==24500== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24500== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24500== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestQuadraticMesh -malloc_debug -malloc_dump -memory_info +==24500== Parent PID: 24036 +==24500== +==24500== +==24500== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24500== Open file descriptor 12: +==24500== at 0x6D7D07D: pipe (pipe.c:29) +==24500== by 0x100C507D: ??? +==24500== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24500== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24500== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24500== by 0x7017D38: PetscInitialize (pinit.c:924) +==24500== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24500== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24500== by 0x12FAA4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24500== by 0x12A6FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24500== by 0x12D700: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24500== by 0x12D5A0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24500== by 0x12DC37: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24500== by 0x128B25: main (TestQuadraticMesh.cpp:19) +==24500== +==24500== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24500== at 0x6D81A1C: __open_nocancel (open64_nocancel.c:39) +==24500== by 0x6D05BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24500== by 0x6590822: ??? +==24500== by 0x659096F: ??? +==24500== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24500== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24500== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24500== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24500== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24500== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24500== by 0x7017D38: PetscInitialize (pinit.c:924) +==24500== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24500== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24500== by 0x12FAA4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24500== by 0x12A6FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24500== by 0x12D700: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24500== by 0x12D5A0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24500== by 0x12DC37: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24500== by 0x128B25: main (TestQuadraticMesh.cpp:19) +==24500== +==24500== Open file descriptor 113: +==24500== +==24500== +==24500== Open file descriptor 110: +==24500== +==24500== +==24500== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraticMesh_valgrind.txt +==24500== +==24500== +==24500== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24500== +==24500== +==24500== +==24500== HEAP SUMMARY: +==24500== in use at exit: 618,222 bytes in 8,238 blocks +==24500== total heap usage: 721,069 allocs, 712,831 frees, 1,393,906,153 bytes allocated +==24500== +==24500== LEAK SUMMARY: +==24500== definitely lost: 0 bytes in 0 blocks +==24500== indirectly lost: 0 bytes in 0 blocks +==24500== possibly lost: 0 bytes in 0 blocks +==24500== still reachable: 24 bytes in 2 blocks +==24500== suppressed: 618,198 bytes in 8,236 blocks +==24500== Reachable blocks (those to which a pointer was found) are not shown. +==24500== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24500== +==24500== For lists of detected and suppressed errors, rerun with: -s +==24500== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 2270 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestQuadraturePointsGroup_valgrind.txt b/log-files/2024-09-20_21-41-09/TestQuadraturePointsGroup_valgrind.txt new file mode 100644 index 000000000..45e84b26f --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestQuadraturePointsGroup_valgrind.txt @@ -0,0 +1,73 @@ +==25264== Memcheck, a memory error detector +==25264== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25264== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25264== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestQuadraturePointsGroup -malloc_debug -malloc_dump -memory_info +==25264== Parent PID: 24036 +==25264== +==25264== +==25264== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25264== Open file descriptor 12: +==25264== at 0x6FF107D: pipe (pipe.c:29) +==25264== by 0x104D507D: ??? +==25264== by 0xC36A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25264== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25264== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25264== by 0x7340D38: PetscInitialize (pinit.c:924) +==25264== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25264== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25264== by 0x11DFB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25264== by 0x11972D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25264== by 0x11BD38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25264== by 0x11BBD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25264== by 0x11C26F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25264== by 0x117B55: main (TestQuadraturePointsGroup.cpp:19) +==25264== +==25264== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25264== at 0x6FF5A1C: __open_nocancel (open64_nocancel.c:39) +==25264== by 0x6F79BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25264== by 0x692F822: ??? +==25264== by 0x692F96F: ??? +==25264== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25264== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25264== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25264== by 0xC36A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25264== by 0x8A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25264== by 0x89FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25264== by 0x7340D38: PetscInitialize (pinit.c:924) +==25264== by 0x68F41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25264== by 0x68F4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25264== by 0x11DFB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25264== by 0x11972D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25264== by 0x11BD38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25264== by 0x11BBD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25264== by 0x11C26F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25264== by 0x117B55: main (TestQuadraturePointsGroup.cpp:19) +==25264== +==25264== Open file descriptor 113: +==25264== +==25264== +==25264== Open file descriptor 110: +==25264== +==25264== +==25264== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraturePointsGroup_valgrind.txt +==25264== +==25264== +==25264== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25264== +==25264== +==25264== +==25264== HEAP SUMMARY: +==25264== in use at exit: 618,254 bytes in 8,238 blocks +==25264== total heap usage: 48,439 allocs, 40,201 frees, 1,338,877,906 bytes allocated +==25264== +==25264== LEAK SUMMARY: +==25264== definitely lost: 0 bytes in 0 blocks +==25264== indirectly lost: 0 bytes in 0 blocks +==25264== possibly lost: 0 bytes in 0 blocks +==25264== still reachable: 24 bytes in 2 blocks +==25264== suppressed: 618,230 bytes in 8,236 blocks +==25264== Reachable blocks (those to which a pointer was found) are not shown. +==25264== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25264== +==25264== For lists of detected and suppressed errors, rerun with: -s +==25264== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestRKC21IvpOdeSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRKC21IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..a336207f3 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRKC21IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24964== Memcheck, a memory error detector +==24964== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24964== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24964== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestRKC21IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24964== Parent PID: 24036 +==24964== +==24964== +==24964== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24964== Open file descriptor 12: +==24964== at 0x503907D: pipe (pipe.c:29) +==24964== by 0xB1E607D: ??? +==24964== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24964== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24964== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24964== by 0x5308D38: PetscInitialize (pinit.c:924) +==24964== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24964== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24964== by 0x127042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24964== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24964== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24964== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24964== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24964== by 0x11EEA5: main (TestRKC21IvpOdeSolver.cpp:19) +==24964== +==24964== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24964== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24964== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24964== by 0x4B77822: ??? +==24964== by 0x4B7796F: ??? +==24964== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24964== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24964== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24964== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24964== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24964== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24964== by 0x5308D38: PetscInitialize (pinit.c:924) +==24964== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24964== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24964== by 0x127042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24964== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24964== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24964== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24964== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24964== by 0x11EEA5: main (TestRKC21IvpOdeSolver.cpp:19) +==24964== +==24964== Open file descriptor 113: +==24964== +==24964== +==24964== Open file descriptor 110: +==24964== +==24964== +==24964== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRKC21IvpOdeSolver_valgrind.txt +==24964== +==24964== +==24964== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24964== +==24964== +==24964== +==24964== HEAP SUMMARY: +==24964== in use at exit: 617,902 bytes in 8,238 blocks +==24964== total heap usage: 85,382 allocs, 77,144 frees, 1,339,005,511 bytes allocated +==24964== +==24964== LEAK SUMMARY: +==24964== definitely lost: 0 bytes in 0 blocks +==24964== indirectly lost: 0 bytes in 0 blocks +==24964== possibly lost: 0 bytes in 0 blocks +==24964== still reachable: 24 bytes in 2 blocks +==24964== suppressed: 617,878 bytes in 8,236 blocks +==24964== Reachable blocks (those to which a pointer was found) are not shown. +==24964== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24964== +==24964== For lists of detected and suppressed errors, rerun with: -s +==24964== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestRandomNumberGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRandomNumberGenerator_valgrind.txt new file mode 100644 index 000000000..ee898797e --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRandomNumberGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24232== Memcheck, a memory error detector +==24232== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24232== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24232== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestRandomNumberGenerator -malloc_debug -malloc_dump -memory_info +==24232== Parent PID: 24036 +==24232== +==24232== +==24232== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24232== Open file descriptor 12: +==24232== at 0x61AB07D: pipe (pipe.c:29) +==24232== by 0xAEA507D: ??? +==24232== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24232== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24232== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24232== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24232== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24232== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24232== by 0x122A91: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24232== by 0x11DA0F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24232== by 0x1202C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24232== by 0x1201BD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24232== by 0x1207D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24232== by 0x11C205: main (TestRandomNumberGenerator.cpp:18) +==24232== +==24232== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24232== at 0x61AFA1C: __open_nocancel (open64_nocancel.c:39) +==24232== by 0x6133BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24232== by 0x4935822: ??? +==24232== by 0x493596F: ??? +==24232== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24232== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24232== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24232== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24232== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24232== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24232== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24232== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24232== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24232== by 0x122A91: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24232== by 0x11DA0F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24232== by 0x1202C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24232== by 0x1201BD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24232== by 0x1207D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24232== by 0x11C205: main (TestRandomNumberGenerator.cpp:18) +==24232== +==24232== Open file descriptor 113: +==24232== +==24232== +==24232== Open file descriptor 110: +==24232== +==24232== +==24232== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRandomNumberGenerator_valgrind.txt +==24232== +==24232== +==24232== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24232== +==24232== +==24232== +==24232== HEAP SUMMARY: +==24232== in use at exit: 620,390 bytes in 8,239 blocks +==24232== total heap usage: 45,032 allocs, 36,793 frees, 1,338,252,583 bytes allocated +==24232== +==24232== LEAK SUMMARY: +==24232== definitely lost: 0 bytes in 0 blocks +==24232== indirectly lost: 0 bytes in 0 blocks +==24232== possibly lost: 0 bytes in 0 blocks +==24232== still reachable: 2,576 bytes in 3 blocks +==24232== suppressed: 617,814 bytes in 8,236 blocks +==24232== Reachable blocks (those to which a pointer was found) are not shown. +==24232== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24232== +==24232== For lists of detected and suppressed errors, rerun with: -s +==24232== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestReplicatableVector_valgrind.txt b/log-files/2024-09-20_21-41-09/TestReplicatableVector_valgrind.txt new file mode 100644 index 000000000..2c36c58e2 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestReplicatableVector_valgrind.txt @@ -0,0 +1,73 @@ +==24258== Memcheck, a memory error detector +==24258== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24258== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24258== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestReplicatableVector -malloc_debug -malloc_dump -memory_info +==24258== Parent PID: 24036 +==24258== +==24258== +==24258== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24258== Open file descriptor 12: +==24258== at 0x603207D: pipe (pipe.c:29) +==24258== by 0xAEA507D: ??? +==24258== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24258== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24258== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24258== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24258== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24258== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24258== by 0x1121BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24258== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24258== by 0x110288: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24258== by 0x110183: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24258== by 0x110797: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24258== by 0x10C555: main (TestReplicatableVector.cpp:18) +==24258== +==24258== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24258== at 0x6036A1C: __open_nocancel (open64_nocancel.c:39) +==24258== by 0x5FBABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24258== by 0x5CB3822: ??? +==24258== by 0x5CB396F: ??? +==24258== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24258== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24258== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24258== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24258== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24258== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24258== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24258== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24258== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24258== by 0x1121BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24258== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24258== by 0x110288: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24258== by 0x110183: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24258== by 0x110797: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24258== by 0x10C555: main (TestReplicatableVector.cpp:18) +==24258== +==24258== Open file descriptor 113: +==24258== +==24258== +==24258== Open file descriptor 110: +==24258== +==24258== +==24258== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestReplicatableVector_valgrind.txt +==24258== +==24258== +==24258== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24258== +==24258== +==24258== +==24258== HEAP SUMMARY: +==24258== in use at exit: 617,838 bytes in 8,238 blocks +==24258== total heap usage: 47,502 allocs, 39,264 frees, 1,338,612,535 bytes allocated +==24258== +==24258== LEAK SUMMARY: +==24258== definitely lost: 0 bytes in 0 blocks +==24258== indirectly lost: 0 bytes in 0 blocks +==24258== possibly lost: 0 bytes in 0 blocks +==24258== still reachable: 24 bytes in 2 blocks +==24258== suppressed: 617,814 bytes in 8,236 blocks +==24258== Reachable blocks (those to which a pointer was found) are not shown. +==24258== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24258== +==24258== For lists of detected and suppressed errors, rerun with: -s +==24258== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestRepresentativeImmersedBoundarySimulations_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRepresentativeImmersedBoundarySimulations_valgrind.txt new file mode 100644 index 000000000..74741860c --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRepresentativeImmersedBoundarySimulations_valgrind.txt @@ -0,0 +1,73 @@ +==26468== Memcheck, a memory error detector +==26468== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26468== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26468== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRepresentativeImmersedBoundarySimulations -malloc_debug -malloc_dump -memory_info +==26468== Parent PID: 24036 +==26468== +==26468== +==26468== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26468== Open file descriptor 12: +==26468== at 0x10CB007D: pipe (pipe.c:29) +==26468== by 0x196AD07D: ??? +==26468== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26468== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26468== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26468== by 0xF225D38: PetscInitialize (pinit.c:924) +==26468== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26468== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26468== by 0x12B28D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26468== by 0x126793: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26468== by 0x128B70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26468== by 0x128A6B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26468== by 0x12907F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26468== by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18) +==26468== +==26468== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26468== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==26468== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26468== by 0x104B5822: ??? +==26468== by 0x104B596F: ??? +==26468== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26468== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26468== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26468== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26468== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26468== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26468== by 0xF225D38: PetscInitialize (pinit.c:924) +==26468== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26468== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26468== by 0x12B28D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26468== by 0x126793: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26468== by 0x128B70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26468== by 0x128A6B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26468== by 0x12907F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26468== by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18) +==26468== +==26468== Open file descriptor 113: +==26468== +==26468== +==26468== Open file descriptor 110: +==26468== +==26468== +==26468== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRepresentativeImmersedBoundarySimulations_valgrind.txt +==26468== +==26468== +==26468== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26468== +==26468== +==26468== +==26468== HEAP SUMMARY: +==26468== in use at exit: 618,279 bytes in 8,235 blocks +==26468== total heap usage: 2,315,235 allocs, 2,307,000 frees, 2,101,668,129 bytes allocated +==26468== +==26468== LEAK SUMMARY: +==26468== definitely lost: 0 bytes in 0 blocks +==26468== indirectly lost: 0 bytes in 0 blocks +==26468== possibly lost: 0 bytes in 0 blocks +==26468== still reachable: 56 bytes in 3 blocks +==26468== suppressed: 618,223 bytes in 8,232 blocks +==26468== Reachable blocks (those to which a pointer was found) are not shown. +==26468== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26468== +==26468== For lists of detected and suppressed errors, rerun with: -s +==26468== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestRestitutionStimuli_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRestitutionStimuli_valgrind.txt new file mode 100644 index 000000000..eb7aaa65a --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRestitutionStimuli_valgrind.txt @@ -0,0 +1,73 @@ +==43734== Memcheck, a memory error detector +==43734== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43734== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43734== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestRestitutionStimuli -malloc_debug -malloc_dump -memory_info +==43734== Parent PID: 24036 +==43734== +==43734== +==43734== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43734== Open file descriptor 12: +==43734== at 0x9A6507D: pipe (pipe.c:29) +==43734== by 0x1432407D: ??? +==43734== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43734== by 0x9698418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43734== by 0x9631D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43734== by 0x8328D38: PetscInitialize (pinit.c:924) +==43734== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43734== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43734== by 0x1227E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43734== by 0x11DA5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43734== by 0x12049C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43734== by 0x12033C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43734== by 0x1209D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43734== by 0x11BE85: main (TestRestitutionStimuli.cpp:19) +==43734== +==43734== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43734== at 0x9A69A1C: __open_nocancel (open64_nocancel.c:39) +==43734== by 0x99EDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43734== by 0x81D3822: ??? +==43734== by 0x81D396F: ??? +==43734== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43734== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43734== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43734== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43734== by 0x9698418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43734== by 0x9631D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43734== by 0x8328D38: PetscInitialize (pinit.c:924) +==43734== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43734== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43734== by 0x1227E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43734== by 0x11DA5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43734== by 0x12049C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43734== by 0x12033C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43734== by 0x1209D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43734== by 0x11BE85: main (TestRestitutionStimuli.cpp:19) +==43734== +==43734== Open file descriptor 113: +==43734== +==43734== +==43734== Open file descriptor 110: +==43734== +==43734== +==43734== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRestitutionStimuli_valgrind.txt +==43734== +==43734== +==43734== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43734== +==43734== +==43734== +==43734== HEAP SUMMARY: +==43734== in use at exit: 618,334 bytes in 8,238 blocks +==43734== total heap usage: 49,254 allocs, 41,016 frees, 1,338,586,839 bytes allocated +==43734== +==43734== LEAK SUMMARY: +==43734== definitely lost: 0 bytes in 0 blocks +==43734== indirectly lost: 0 bytes in 0 blocks +==43734== possibly lost: 0 bytes in 0 blocks +==43734== still reachable: 24 bytes in 2 blocks +==43734== suppressed: 618,310 bytes in 8,236 blocks +==43734== Reachable blocks (those to which a pointer was found) are not shown. +==43734== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43734== +==43734== For lists of detected and suppressed errors, rerun with: -s +==43734== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..74b0a308d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24965== Memcheck, a memory error detector +==24965== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24965== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24965== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestRungeKuttaFehlbergIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24965== Parent PID: 24036 +==24965== +==24965== +==24965== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24965== Open file descriptor 12: +==24965== at 0x64F007D: pipe (pipe.c:29) +==24965== by 0xB1E407D: ??? +==24965== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24965== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24965== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24965== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24965== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24965== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24965== by 0x129E27: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24965== by 0x123D15: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24965== by 0x126B50: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24965== by 0x1269F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24965== by 0x127087: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24965== by 0x121085: main (TestRungeKuttaFehlbergIvpOdeSolver.cpp:19) +==24965== +==24965== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24965== at 0x64F4A1C: __open_nocancel (open64_nocancel.c:39) +==24965== by 0x6478BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24965== by 0x4B77822: ??? +==24965== by 0x4B7796F: ??? +==24965== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24965== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24965== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24965== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24965== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24965== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24965== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24965== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24965== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24965== by 0x129E27: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24965== by 0x123D15: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24965== by 0x126B50: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24965== by 0x1269F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24965== by 0x127087: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24965== by 0x121085: main (TestRungeKuttaFehlbergIvpOdeSolver.cpp:19) +==24965== +==24965== Open file descriptor 113: +==24965== +==24965== +==24965== Open file descriptor 110: +==24965== +==24965== +==24965== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt +==24965== +==24965== +==24965== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24965== +==24965== +==24965== +==24965== HEAP SUMMARY: +==24965== in use at exit: 617,902 bytes in 8,238 blocks +==24965== total heap usage: 45,767 allocs, 37,529 frees, 1,338,245,119 bytes allocated +==24965== +==24965== LEAK SUMMARY: +==24965== definitely lost: 0 bytes in 0 blocks +==24965== indirectly lost: 0 bytes in 0 blocks +==24965== possibly lost: 0 bytes in 0 blocks +==24965== still reachable: 24 bytes in 2 blocks +==24965== suppressed: 617,878 bytes in 8,236 blocks +==24965== Reachable blocks (those to which a pointer was found) are not shown. +==24965== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24965== +==24965== For lists of detected and suppressed errors, rerun with: -s +==24965== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..54204333b --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40014== Memcheck, a memory error detector +==40014== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40014== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40014== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningContactInhibitionSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40014== Parent PID: 24036 +==40014== +==40014== +==40014== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40014== Open file descriptor 12: +==40014== at 0x10D9707D: pipe (pipe.c:29) +==40014== by 0x196AD07D: ??? +==40014== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40014== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40014== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40014== by 0xF225D38: PetscInitialize (pinit.c:924) +==40014== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40014== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40014== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40014== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40014== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40014== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40014== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40014== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) +==40014== +==40014== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40014== at 0x10D9BA1C: __open_nocancel (open64_nocancel.c:39) +==40014== by 0x10D1FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40014== by 0x104B5822: ??? +==40014== by 0x104B596F: ??? +==40014== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40014== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40014== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40014== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40014== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40014== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40014== by 0xF225D38: PetscInitialize (pinit.c:924) +==40014== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40014== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40014== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40014== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40014== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40014== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40014== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40014== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) +==40014== +==40014== Open file descriptor 113: +==40014== +==40014== +==40014== Open file descriptor 110: +==40014== +==40014== +==40014== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt +==40014== +==40014== +==40014== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40014== +==40014== +==40014== +==40014== HEAP SUMMARY: +==40014== in use at exit: 618,279 bytes in 8,235 blocks +==40014== total heap usage: 11,072,724 allocs, 11,064,489 frees, 4,765,710,463 bytes allocated +==40014== +==40014== LEAK SUMMARY: +==40014== definitely lost: 0 bytes in 0 blocks +==40014== indirectly lost: 0 bytes in 0 blocks +==40014== possibly lost: 0 bytes in 0 blocks +==40014== still reachable: 56 bytes in 3 blocks +==40014== suppressed: 618,223 bytes in 8,232 blocks +==40014== Reachable blocks (those to which a pointer was found) are not shown. +==40014== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40014== +==40014== For lists of detected and suppressed errors, rerun with: -s +==40014== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt new file mode 100644 index 000000000..3127f48c4 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40987== Memcheck, a memory error detector +==40987== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40987== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40987== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info +==40987== Parent PID: 24036 +==40987== +==40987== +==40987== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40987== Open file descriptor 12: +==40987== at 0x1257007D: pipe (pipe.c:29) +==40987== by 0x1B36D07D: ??? +==40987== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40987== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40987== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40987== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40987== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40987== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40987== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40987== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40987== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40987== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40987== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40987== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) +==40987== +==40987== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40987== at 0x12574A1C: __open_nocancel (open64_nocancel.c:39) +==40987== by 0x124F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40987== by 0x11D75822: ??? +==40987== by 0x11D7596F: ??? +==40987== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40987== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40987== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40987== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40987== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40987== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40987== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40987== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40987== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40987== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40987== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40987== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40987== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40987== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40987== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) +==40987== +==40987== Open file descriptor 113: +==40987== +==40987== +==40987== Open file descriptor 110: +==40987== +==40987== +==40987== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt +==40987== +==40987== +==40987== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40987== +==40987== +==40987== +==40987== HEAP SUMMARY: +==40987== in use at exit: 618,295 bytes in 8,235 blocks +==40987== total heap usage: 16,186,046 allocs, 16,177,811 frees, 2,829,766,692 bytes allocated +==40987== +==40987== LEAK SUMMARY: +==40987== definitely lost: 0 bytes in 0 blocks +==40987== indirectly lost: 0 bytes in 0 blocks +==40987== possibly lost: 0 bytes in 0 blocks +==40987== still reachable: 56 bytes in 3 blocks +==40987== suppressed: 618,239 bytes in 8,232 blocks +==40987== Reachable blocks (those to which a pointer was found) are not shown. +==40987== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40987== +==40987== For lists of detected and suppressed errors, rerun with: -s +==40987== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..bff110bc2 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40052== Memcheck, a memory error detector +==40052== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40052== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40052== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40052== Parent PID: 24036 +==40052== +==40052== +==40052== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40052== Open file descriptor 12: +==40052== at 0xF7F907D: pipe (pipe.c:29) +==40052== by 0x196AD07D: ??? +==40052== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40052== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40052== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40052== by 0x10127D38: PetscInitialize (pinit.c:924) +==40052== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40052== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40052== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40052== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40052== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40052== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40052== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40052== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) +==40052== +==40052== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40052== at 0xF7FDA1C: __open_nocancel (open64_nocancel.c:39) +==40052== by 0xF781BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40052== by 0xF137822: ??? +==40052== by 0xF13796F: ??? +==40052== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40052== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40052== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40052== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40052== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40052== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40052== by 0x10127D38: PetscInitialize (pinit.c:924) +==40052== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40052== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40052== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40052== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40052== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40052== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40052== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40052== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) +==40052== +==40052== Open file descriptor 113: +==40052== +==40052== +==40052== Open file descriptor 110: +==40052== +==40052== +==40052== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt +==40052== +==40052== +==40052== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40052== +==40052== +==40052== +==40052== HEAP SUMMARY: +==40052== in use at exit: 618,279 bytes in 8,235 blocks +==40052== total heap usage: 5,177,214 allocs, 5,168,979 frees, 1,778,170,975 bytes allocated +==40052== +==40052== LEAK SUMMARY: +==40052== definitely lost: 0 bytes in 0 blocks +==40052== indirectly lost: 0 bytes in 0 blocks +==40052== possibly lost: 0 bytes in 0 blocks +==40052== still reachable: 56 bytes in 3 blocks +==40052== suppressed: 618,223 bytes in 8,232 blocks +==40052== Reachable blocks (those to which a pointer was found) are not shown. +==40052== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40052== +==40052== For lists of detected and suppressed errors, rerun with: -s +==40052== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..5cff443a9 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40153== Memcheck, a memory error detector +==40153== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40153== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40153== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDifferentialAdhesionSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40153== Parent PID: 24036 +==40153== +==40153== +==40153== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40153== Open file descriptor 12: +==40153== at 0x10CB007D: pipe (pipe.c:29) +==40153== by 0x196AD07D: ??? +==40153== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40153== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40153== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40153== by 0xF225D38: PetscInitialize (pinit.c:924) +==40153== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40153== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40153== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40153== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40153== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40153== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40153== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40153== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) +==40153== +==40153== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40153== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==40153== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40153== by 0x104B5822: ??? +==40153== by 0x104B596F: ??? +==40153== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40153== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40153== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40153== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40153== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40153== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40153== by 0xF225D38: PetscInitialize (pinit.c:924) +==40153== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40153== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40153== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40153== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40153== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40153== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40153== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40153== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) +==40153== +==40153== Open file descriptor 113: +==40153== +==40153== +==40153== Open file descriptor 110: +==40153== +==40153== +==40153== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt +==40153== +==40153== +==40153== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40153== +==40153== +==40153== +==40153== HEAP SUMMARY: +==40153== in use at exit: 618,295 bytes in 8,236 blocks +==40153== total heap usage: 2,563,996 allocs, 2,555,760 frees, 1,463,689,811 bytes allocated +==40153== +==40153== LEAK SUMMARY: +==40153== definitely lost: 0 bytes in 0 blocks +==40153== indirectly lost: 0 bytes in 0 blocks +==40153== possibly lost: 0 bytes in 0 blocks +==40153== still reachable: 72 bytes in 4 blocks +==40153== suppressed: 618,223 bytes in 8,232 blocks +==40153== Reachable blocks (those to which a pointer was found) are not shown. +==40153== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40153== +==40153== For lists of detected and suppressed errors, rerun with: -s +==40153== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..7a516cab1 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40156== Memcheck, a memory error detector +==40156== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40156== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40156== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningImmersedBoundarySimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40156== Parent PID: 24036 +==40156== +==40156== +==40156== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40156== Open file descriptor 12: +==40156== at 0x10CB007D: pipe (pipe.c:29) +==40156== by 0x196AD07D: ??? +==40156== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40156== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40156== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40156== by 0xF225D38: PetscInitialize (pinit.c:924) +==40156== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40156== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40156== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40156== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40156== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40156== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40156== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40156== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) +==40156== +==40156== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40156== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==40156== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40156== by 0x104B5822: ??? +==40156== by 0x104B596F: ??? +==40156== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40156== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40156== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40156== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40156== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40156== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40156== by 0xF225D38: PetscInitialize (pinit.c:924) +==40156== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40156== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40156== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40156== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40156== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40156== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40156== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40156== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) +==40156== +==40156== Open file descriptor 113: +==40156== +==40156== +==40156== Open file descriptor 110: +==40156== +==40156== +==40156== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt +==40156== +==40156== +==40156== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40156== +==40156== +==40156== +==40156== HEAP SUMMARY: +==40156== in use at exit: 618,279 bytes in 8,235 blocks +==40156== total heap usage: 654,974 allocs, 646,739 frees, 1,512,860,393 bytes allocated +==40156== +==40156== LEAK SUMMARY: +==40156== definitely lost: 0 bytes in 0 blocks +==40156== indirectly lost: 0 bytes in 0 blocks +==40156== possibly lost: 0 bytes in 0 blocks +==40156== still reachable: 56 bytes in 3 blocks +==40156== suppressed: 618,223 bytes in 8,232 blocks +==40156== Reachable blocks (those to which a pointer was found) are not shown. +==40156== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40156== +==40156== For lists of detected and suppressed errors, rerun with: -s +==40156== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..5e10a6fc2 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==41137== Memcheck, a memory error detector +==41137== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41137== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41137== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==41137== Parent PID: 24036 +==41137== +==41137== +==41137== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41137== Open file descriptor 12: +==41137== at 0x1257007D: pipe (pipe.c:29) +==41137== by 0x1B36D07D: ??? +==41137== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41137== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41137== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41137== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==41137== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41137== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41137== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41137== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41137== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41137== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41137== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41137== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) +==41137== +==41137== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41137== at 0x12574A1C: __open_nocancel (open64_nocancel.c:39) +==41137== by 0x124F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41137== by 0x11D75822: ??? +==41137== by 0x11D7596F: ??? +==41137== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41137== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41137== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41137== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41137== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41137== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41137== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==41137== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41137== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41137== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41137== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41137== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41137== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41137== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41137== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) +==41137== +==41137== Open file descriptor 113: +==41137== +==41137== +==41137== Open file descriptor 110: +==41137== +==41137== +==41137== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt +==41137== +==41137== +==41137== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41137== +==41137== +==41137== +==41137== HEAP SUMMARY: +==41137== in use at exit: 618,366 bytes in 8,239 blocks +==41137== total heap usage: 1,753,596 allocs, 1,745,357 frees, 1,514,895,687 bytes allocated +==41137== +==41137== LEAK SUMMARY: +==41137== definitely lost: 0 bytes in 0 blocks +==41137== indirectly lost: 0 bytes in 0 blocks +==41137== possibly lost: 0 bytes in 0 blocks +==41137== still reachable: 56 bytes in 3 blocks +==41137== suppressed: 618,310 bytes in 8,236 blocks +==41137== Reachable blocks (those to which a pointer was found) are not shown. +==41137== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41137== +==41137== For lists of detected and suppressed errors, rerun with: -s +==41137== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestRunningMeshBasedSimulationsTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRunningMeshBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..d39582612 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRunningMeshBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40271== Memcheck, a memory error detector +==40271== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40271== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40271== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40271== Parent PID: 24036 +==40271== +==40271== +==40271== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40271== Open file descriptor 12: +==40271== at 0x10CB007D: pipe (pipe.c:29) +==40271== by 0x196AD07D: ??? +==40271== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40271== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40271== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40271== by 0xF225D38: PetscInitialize (pinit.c:924) +==40271== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40271== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40271== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40271== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40271== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40271== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40271== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40271== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) +==40271== +==40271== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40271== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==40271== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40271== by 0x104B5822: ??? +==40271== by 0x104B596F: ??? +==40271== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40271== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40271== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40271== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40271== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40271== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40271== by 0xF225D38: PetscInitialize (pinit.c:924) +==40271== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40271== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40271== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40271== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40271== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40271== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40271== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40271== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) +==40271== +==40271== Open file descriptor 113: +==40271== +==40271== +==40271== Open file descriptor 110: +==40271== +==40271== +==40271== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt +==40271== +==40271== +==40271== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40271== +==40271== +==40271== +==40271== HEAP SUMMARY: +==40271== in use at exit: 618,279 bytes in 8,235 blocks +==40271== total heap usage: 3,334,917 allocs, 3,326,682 frees, 2,266,435,660 bytes allocated +==40271== +==40271== LEAK SUMMARY: +==40271== definitely lost: 0 bytes in 0 blocks +==40271== indirectly lost: 0 bytes in 0 blocks +==40271== possibly lost: 0 bytes in 0 blocks +==40271== still reachable: 56 bytes in 3 blocks +==40271== suppressed: 618,223 bytes in 8,232 blocks +==40271== Reachable blocks (those to which a pointer was found) are not shown. +==40271== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40271== +==40271== For lists of detected and suppressed errors, rerun with: -s +==40271== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestRunningNodeBasedSimulationsTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRunningNodeBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..43ec90bea --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRunningNodeBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40311== Memcheck, a memory error detector +==40311== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40311== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40311== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40311== Parent PID: 24036 +==40311== +==40311== +==40311== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40311== Open file descriptor 12: +==40311== at 0xF8E007D: pipe (pipe.c:29) +==40311== by 0x196AD07D: ??? +==40311== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40311== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40311== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40311== by 0x10210D38: PetscInitialize (pinit.c:924) +==40311== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40311== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40311== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40311== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40311== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40311== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40311== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40311== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) +==40311== +==40311== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40311== at 0xF8E4A1C: __open_nocancel (open64_nocancel.c:39) +==40311== by 0xF868BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40311== by 0xF137822: ??? +==40311== by 0xF13796F: ??? +==40311== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40311== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40311== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40311== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40311== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40311== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40311== by 0x10210D38: PetscInitialize (pinit.c:924) +==40311== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40311== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40311== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40311== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40311== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40311== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40311== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40311== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) +==40311== +==40311== Open file descriptor 113: +==40311== +==40311== +==40311== Open file descriptor 110: +==40311== +==40311== +==40311== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt +==40311== +==40311== +==40311== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40311== +==40311== +==40311== +==40311== HEAP SUMMARY: +==40311== in use at exit: 618,350 bytes in 8,239 blocks +==40311== total heap usage: 672,361 allocs, 664,122 frees, 1,725,083,096 bytes allocated +==40311== +==40311== LEAK SUMMARY: +==40311== definitely lost: 0 bytes in 0 blocks +==40311== indirectly lost: 0 bytes in 0 blocks +==40311== possibly lost: 0 bytes in 0 blocks +==40311== still reachable: 56 bytes in 3 blocks +==40311== suppressed: 618,294 bytes in 8,236 blocks +==40311== Reachable blocks (those to which a pointer was found) are not shown. +==40311== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40311== +==40311== For lists of detected and suppressed errors, rerun with: -s +==40311== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestRunningPottsBasedSimulationsTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRunningPottsBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..a1b8b95a8 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRunningPottsBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40317== Memcheck, a memory error detector +==40317== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40317== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40317== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40317== Parent PID: 24036 +==40317== +==40317== +==40317== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40317== Open file descriptor 12: +==40317== at 0xDB9E07D: pipe (pipe.c:29) +==40317== by 0x196AD07D: ??? +==40317== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40317== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40317== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40317== by 0x10127D38: PetscInitialize (pinit.c:924) +==40317== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40317== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40317== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40317== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40317== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40317== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40317== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40317== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) +==40317== +==40317== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40317== at 0xDBA2A1C: __open_nocancel (open64_nocancel.c:39) +==40317== by 0xDB26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40317== by 0xD4DA822: ??? +==40317== by 0xD4DA96F: ??? +==40317== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40317== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40317== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40317== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40317== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40317== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40317== by 0x10127D38: PetscInitialize (pinit.c:924) +==40317== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40317== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40317== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40317== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40317== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40317== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40317== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40317== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) +==40317== +==40317== Open file descriptor 113: +==40317== +==40317== +==40317== Open file descriptor 110: +==40317== +==40317== +==40317== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt +==40317== +==40317== +==40317== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40317== +==40317== +==40317== +==40317== HEAP SUMMARY: +==40317== in use at exit: 618,279 bytes in 8,235 blocks +==40317== total heap usage: 40,686,890 allocs, 40,678,655 frees, 3,830,312,842 bytes allocated +==40317== +==40317== LEAK SUMMARY: +==40317== definitely lost: 0 bytes in 0 blocks +==40317== indirectly lost: 0 bytes in 0 blocks +==40317== possibly lost: 0 bytes in 0 blocks +==40317== still reachable: 56 bytes in 3 blocks +==40317== suppressed: 618,223 bytes in 8,232 blocks +==40317== Reachable blocks (those to which a pointer was found) are not shown. +==40317== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40317== +==40317== For lists of detected and suppressed errors, rerun with: -s +==40317== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..6a71c9356 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40318== Memcheck, a memory error detector +==40318== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40318== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40318== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40318== Parent PID: 24036 +==40318== +==40318== +==40318== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40318== Open file descriptor 12: +==40318== at 0xFB9607D: pipe (pipe.c:29) +==40318== by 0x196AC07D: ??? +==40318== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40318== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40318== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40318== by 0x10127D38: PetscInitialize (pinit.c:924) +==40318== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40318== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40318== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40318== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40318== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40318== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40318== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40318== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) +==40318== +==40318== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40318== at 0xFB9AA1C: __open_nocancel (open64_nocancel.c:39) +==40318== by 0xFB1EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40318== by 0xF4D4822: ??? +==40318== by 0xF4D496F: ??? +==40318== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40318== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40318== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40318== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40318== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40318== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40318== by 0x10127D38: PetscInitialize (pinit.c:924) +==40318== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40318== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40318== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40318== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40318== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40318== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40318== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40318== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) +==40318== +==40318== Open file descriptor 113: +==40318== +==40318== +==40318== Open file descriptor 110: +==40318== +==40318== +==40318== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt +==40318== +==40318== +==40318== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40318== +==40318== +==40318== +==40318== HEAP SUMMARY: +==40318== in use at exit: 618,279 bytes in 8,235 blocks +==40318== total heap usage: 2,084,195 allocs, 2,075,960 frees, 1,674,710,226 bytes allocated +==40318== +==40318== LEAK SUMMARY: +==40318== definitely lost: 0 bytes in 0 blocks +==40318== indirectly lost: 0 bytes in 0 blocks +==40318== possibly lost: 0 bytes in 0 blocks +==40318== still reachable: 56 bytes in 3 blocks +==40318== suppressed: 618,223 bytes in 8,232 blocks +==40318== Reachable blocks (those to which a pointer was found) are not shown. +==40318== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40318== +==40318== For lists of detected and suppressed errors, rerun with: -s +==40318== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 32 from 32) diff --git a/log-files/2024-09-20_21-41-09/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..029bbc960 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==41139== Memcheck, a memory error detector +==41139== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41139== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41139== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==41139== Parent PID: 24036 +==41139== +==41139== +==41139== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41139== Open file descriptor 12: +==41139== at 0x1257007D: pipe (pipe.c:29) +==41139== by 0x1B36D07D: ??? +==41139== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41139== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41139== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41139== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==41139== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41139== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41139== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41139== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41139== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41139== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41139== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41139== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) +==41139== +==41139== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41139== at 0x12574A1C: __open_nocancel (open64_nocancel.c:39) +==41139== by 0x124F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41139== by 0x11D75822: ??? +==41139== by 0x11D7596F: ??? +==41139== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41139== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41139== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41139== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41139== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41139== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41139== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==41139== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41139== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41139== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41139== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41139== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41139== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41139== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41139== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) +==41139== +==41139== Open file descriptor 113: +==41139== +==41139== +==41139== Open file descriptor 110: +==41139== +==41139== +==41139== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt +==41139== +==41139== +==41139== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41139== +==41139== +==41139== +==41139== HEAP SUMMARY: +==41139== in use at exit: 618,446 bytes in 8,240 blocks +==41139== total heap usage: 1,617,680 allocs, 1,609,440 frees, 1,458,367,703 bytes allocated +==41139== +==41139== LEAK SUMMARY: +==41139== definitely lost: 0 bytes in 0 blocks +==41139== indirectly lost: 0 bytes in 0 blocks +==41139== possibly lost: 0 bytes in 0 blocks +==41139== still reachable: 136 bytes in 4 blocks +==41139== suppressed: 618,310 bytes in 8,236 blocks +==41139== Reachable blocks (those to which a pointer was found) are not shown. +==41139== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41139== +==41139== For lists of detected and suppressed errors, rerun with: -s +==41139== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestRunningVertexBasedSimulationsTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRunningVertexBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..07550aeec --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRunningVertexBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40371== Memcheck, a memory error detector +==40371== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40371== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40371== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40371== Parent PID: 24036 +==40371== +==40371== +==40371== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40371== Open file descriptor 12: +==40371== at 0x10D9707D: pipe (pipe.c:29) +==40371== by 0x196AD07D: ??? +==40371== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40371== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40371== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40371== by 0xF225D38: PetscInitialize (pinit.c:924) +==40371== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40371== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40371== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40371== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40371== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40371== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40371== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40371== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) +==40371== +==40371== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40371== at 0x10D9BA1C: __open_nocancel (open64_nocancel.c:39) +==40371== by 0x10D1FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40371== by 0x104B5822: ??? +==40371== by 0x104B596F: ??? +==40371== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40371== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40371== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40371== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40371== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40371== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40371== by 0xF225D38: PetscInitialize (pinit.c:924) +==40371== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40371== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40371== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40371== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40371== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40371== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40371== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40371== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) +==40371== +==40371== Open file descriptor 113: +==40371== +==40371== +==40371== Open file descriptor 110: +==40371== +==40371== +==40371== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt +==40371== +==40371== +==40371== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40371== +==40371== +==40371== +==40371== HEAP SUMMARY: +==40371== in use at exit: 618,350 bytes in 8,239 blocks +==40371== total heap usage: 1,398,844 allocs, 1,390,605 frees, 1,398,428,459 bytes allocated +==40371== +==40371== LEAK SUMMARY: +==40371== definitely lost: 0 bytes in 0 blocks +==40371== indirectly lost: 0 bytes in 0 blocks +==40371== possibly lost: 0 bytes in 0 blocks +==40371== still reachable: 56 bytes in 3 blocks +==40371== suppressed: 618,294 bytes in 8,236 blocks +==40371== Reachable blocks (those to which a pointer was found) are not shown. +==40371== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40371== +==40371== For lists of detected and suppressed errors, rerun with: -s +==40371== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestRushLarsen_valgrind.txt b/log-files/2024-09-20_21-41-09/TestRushLarsen_valgrind.txt new file mode 100644 index 000000000..90c69e27c --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestRushLarsen_valgrind.txt @@ -0,0 +1,73 @@ +==42874== Memcheck, a memory error detector +==42874== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42874== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42874== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestRushLarsen -malloc_debug -malloc_dump -memory_info +==42874== Parent PID: 24036 +==42874== +==42874== +==42874== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42874== Open file descriptor 12: +==42874== at 0x9C6507D: pipe (pipe.c:29) +==42874== by 0x1432407D: ??? +==42874== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42874== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42874== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42874== by 0x8505D38: PetscInitialize (pinit.c:924) +==42874== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42874== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42874== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42874== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42874== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42874== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42874== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42874== by 0x114C35: main (TestRushLarsen.cpp:18) +==42874== +==42874== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42874== at 0x9C69A1C: __open_nocancel (open64_nocancel.c:39) +==42874== by 0x9BEDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42874== by 0x9795822: ??? +==42874== by 0x979596F: ??? +==42874== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42874== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42874== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42874== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42874== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42874== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42874== by 0x8505D38: PetscInitialize (pinit.c:924) +==42874== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42874== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42874== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42874== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42874== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42874== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42874== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42874== by 0x114C35: main (TestRushLarsen.cpp:18) +==42874== +==42874== Open file descriptor 113: +==42874== +==42874== +==42874== Open file descriptor 110: +==42874== +==42874== +==42874== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRushLarsen_valgrind.txt +==42874== +==42874== +==42874== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42874== +==42874== +==42874== +==42874== HEAP SUMMARY: +==42874== in use at exit: 621,814 bytes in 8,242 blocks +==42874== total heap usage: 1,051,894 allocs, 1,043,652 frees, 1,778,851,283 bytes allocated +==42874== +==42874== LEAK SUMMARY: +==42874== definitely lost: 0 bytes in 0 blocks +==42874== indirectly lost: 0 bytes in 0 blocks +==42874== possibly lost: 0 bytes in 0 blocks +==42874== still reachable: 3,575 bytes in 10 blocks +==42874== suppressed: 618,239 bytes in 8,232 blocks +==42874== Reachable blocks (those to which a pointer was found) are not shown. +==42874== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42874== +==42874== For lists of detected and suppressed errors, rerun with: -s +==42874== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestShovingCaBasedDivisionRules_valgrind.txt b/log-files/2024-09-20_21-41-09/TestShovingCaBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..d52876bef --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestShovingCaBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==40591== Memcheck, a memory error detector +==40591== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40591== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40591== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestShovingCaBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==40591== Parent PID: 24036 +==40591== +==40591== +==40591== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40591== Open file descriptor 12: +==40591== at 0x1095707D: pipe (pipe.c:29) +==40591== by 0x1B36D07D: ??? +==40591== by 0x154C04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40591== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40591== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40591== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40591== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40591== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40591== by 0x12E1A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40591== by 0x128F3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40591== by 0x12B950: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40591== by 0x12B7F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40591== by 0x12BE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40591== by 0x127365: main (TestShovingCaBasedDivisionRules.cpp:19) +==40591== +==40591== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40591== at 0x1095BA1C: __open_nocancel (open64_nocancel.c:39) +==40591== by 0x108DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40591== by 0xED9C822: ??? +==40591== by 0xED9C96F: ??? +==40591== by 0x155656DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40591== by 0x15565938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40591== by 0x1551B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40591== by 0x154C02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40591== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40591== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40591== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40591== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40591== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40591== by 0x12E1A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40591== by 0x128F3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40591== by 0x12B950: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40591== by 0x12B7F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40591== by 0x12BE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40591== by 0x127365: main (TestShovingCaBasedDivisionRules.cpp:19) +==40591== +==40591== Open file descriptor 113: +==40591== +==40591== +==40591== Open file descriptor 110: +==40591== +==40591== +==40591== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestShovingCaBasedDivisionRules_valgrind.txt +==40591== +==40591== +==40591== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40591== +==40591== +==40591== +==40591== HEAP SUMMARY: +==40591== in use at exit: 618,382 bytes in 8,240 blocks +==40591== total heap usage: 57,802 allocs, 49,562 frees, 1,339,210,628 bytes allocated +==40591== +==40591== LEAK SUMMARY: +==40591== definitely lost: 0 bytes in 0 blocks +==40591== indirectly lost: 0 bytes in 0 blocks +==40591== possibly lost: 0 bytes in 0 blocks +==40591== still reachable: 72 bytes in 4 blocks +==40591== suppressed: 618,310 bytes in 8,236 blocks +==40591== Reachable blocks (those to which a pointer was found) are not shown. +==40591== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40591== +==40591== For lists of detected and suppressed errors, rerun with: -s +==40591== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestSimpleCellCycleModelsForCrypt_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSimpleCellCycleModelsForCrypt_valgrind.txt new file mode 100644 index 000000000..d86bf6629 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSimpleCellCycleModelsForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40440== Memcheck, a memory error detector +==40440== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40440== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40440== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info +==40440== Parent PID: 24036 +==40440== +==40440== +==40440== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40440== Open file descriptor 12: +==40440== at 0x1095707D: pipe (pipe.c:29) +==40440== by 0x1B36D07D: ??? +==40440== by 0x154C04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40440== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40440== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40440== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40440== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40440== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40440== by 0x186CD7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40440== by 0x17F2CB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40440== by 0x18258E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40440== by 0x18242E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40440== by 0x182AC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40440== by 0x17BBF5: main (TestSimpleCellCycleModelsForCrypt.cpp:19) +==40440== +==40440== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40440== at 0x1095BA1C: __open_nocancel (open64_nocancel.c:39) +==40440== by 0x108DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40440== by 0xED9C822: ??? +==40440== by 0xED9C96F: ??? +==40440== by 0x155656DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40440== by 0x15565938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40440== by 0x1551B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40440== by 0x154C02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40440== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40440== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40440== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40440== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40440== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40440== by 0x186CD7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40440== by 0x17F2CB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40440== by 0x18258E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40440== by 0x18242E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40440== by 0x182AC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40440== by 0x17BBF5: main (TestSimpleCellCycleModelsForCrypt.cpp:19) +==40440== +==40440== Open file descriptor 113: +==40440== +==40440== +==40440== Open file descriptor 110: +==40440== +==40440== +==40440== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt +==40440== +==40440== +==40440== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40440== +==40440== +==40440== +==40440== HEAP SUMMARY: +==40440== in use at exit: 618,430 bytes in 8,240 blocks +==40440== total heap usage: 753,783 allocs, 745,543 frees, 1,372,608,437 bytes allocated +==40440== +==40440== LEAK SUMMARY: +==40440== definitely lost: 0 bytes in 0 blocks +==40440== indirectly lost: 0 bytes in 0 blocks +==40440== possibly lost: 0 bytes in 0 blocks +==40440== still reachable: 120 bytes in 4 blocks +==40440== suppressed: 618,310 bytes in 8,236 blocks +==40440== Reachable blocks (those to which a pointer was found) are not shown. +==40440== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40440== +==40440== For lists of detected and suppressed errors, rerun with: -s +==40440== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestSimpleCellCycleModels_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSimpleCellCycleModels_valgrind.txt new file mode 100644 index 000000000..d84ef552e --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSimpleCellCycleModels_valgrind.txt @@ -0,0 +1,73 @@ +==25488== Memcheck, a memory error detector +==25488== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25488== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25488== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimpleCellCycleModels -malloc_debug -malloc_dump -memory_info +==25488== Parent PID: 24036 +==25488== +==25488== +==25488== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25488== Open file descriptor 12: +==25488== at 0xED5007D: pipe (pipe.c:29) +==25488== by 0x196AC07D: ??? +==25488== by 0x13C004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25488== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25488== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25488== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25488== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25488== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25488== by 0x137FA7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25488== by 0x13098F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25488== by 0x133A5C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25488== by 0x1338FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25488== by 0x133F93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25488== by 0x12D2C5: main (TestSimpleCellCycleModels.cpp:19) +==25488== +==25488== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25488== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25488== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25488== by 0xD4DA822: ??? +==25488== by 0xD4DA96F: ??? +==25488== by 0x13CA56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25488== by 0x13CA5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25488== by 0x13C5B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25488== by 0x13C002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25488== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25488== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25488== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25488== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25488== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25488== by 0x137FA7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25488== by 0x13098F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25488== by 0x133A5C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25488== by 0x1338FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25488== by 0x133F93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25488== by 0x12D2C5: main (TestSimpleCellCycleModels.cpp:19) +==25488== +==25488== Open file descriptor 113: +==25488== +==25488== +==25488== Open file descriptor 110: +==25488== +==25488== +==25488== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModels_valgrind.txt +==25488== +==25488== +==25488== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25488== +==25488== +==25488== +==25488== HEAP SUMMARY: +==25488== in use at exit: 618,382 bytes in 8,240 blocks +==25488== total heap usage: 78,949 allocs, 70,709 frees, 1,342,260,423 bytes allocated +==25488== +==25488== LEAK SUMMARY: +==25488== definitely lost: 0 bytes in 0 blocks +==25488== indirectly lost: 0 bytes in 0 blocks +==25488== possibly lost: 0 bytes in 0 blocks +==25488== still reachable: 88 bytes in 4 blocks +==25488== suppressed: 618,294 bytes in 8,236 blocks +==25488== Reachable blocks (those to which a pointer was found) are not shown. +==25488== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25488== +==25488== For lists of detected and suppressed errors, rerun with: -s +==25488== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestSimpleDataWriter_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSimpleDataWriter_valgrind.txt new file mode 100644 index 000000000..0d3e42bc7 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSimpleDataWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24324== Memcheck, a memory error detector +==24324== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24324== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24324== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestSimpleDataWriter -malloc_debug -malloc_dump -memory_info +==24324== Parent PID: 24036 +==24324== +==24324== +==24324== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24324== Open file descriptor 12: +==24324== at 0x61DC07D: pipe (pipe.c:29) +==24324== by 0xAF1807D: ??? +==24324== by 0x8A2F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24324== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24324== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24324== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24324== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24324== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24324== by 0x11CE43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24324== by 0x11682D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24324== by 0x119106: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24324== by 0x118FA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24324== by 0x11963D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24324== by 0x114C55: main (TestSimpleDataWriter.cpp:19) +==24324== +==24324== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24324== at 0x61E0A1C: __open_nocancel (open64_nocancel.c:39) +==24324== by 0x6164BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24324== by 0x5D26822: ??? +==24324== by 0x5D2696F: ??? +==24324== by 0x8AD66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24324== by 0x8AD6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24324== by 0x8A8C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24324== by 0x8A2F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24324== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24324== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24324== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24324== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24324== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24324== by 0x11CE43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24324== by 0x11682D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24324== by 0x119106: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24324== by 0x118FA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24324== by 0x11963D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24324== by 0x114C55: main (TestSimpleDataWriter.cpp:19) +==24324== +==24324== Open file descriptor 113: +==24324== +==24324== +==24324== Open file descriptor 110: +==24324== +==24324== +==24324== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleDataWriter_valgrind.txt +==24324== +==24324== +==24324== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24324== +==24324== +==24324== +==24324== HEAP SUMMARY: +==24324== in use at exit: 617,854 bytes in 8,238 blocks +==24324== total heap usage: 45,178 allocs, 36,940 frees, 1,338,360,688 bytes allocated +==24324== +==24324== LEAK SUMMARY: +==24324== definitely lost: 0 bytes in 0 blocks +==24324== indirectly lost: 0 bytes in 0 blocks +==24324== possibly lost: 0 bytes in 0 blocks +==24324== still reachable: 24 bytes in 2 blocks +==24324== suppressed: 617,830 bytes in 8,236 blocks +==24324== Reachable blocks (those to which a pointer was found) are not shown. +==24324== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24324== +==24324== For lists of detected and suppressed errors, rerun with: -s +==24324== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestSimpleImpedanceProblem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSimpleImpedanceProblem_valgrind.txt new file mode 100644 index 000000000..a66c308ad --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSimpleImpedanceProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41193== Memcheck, a memory error detector +==41193== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41193== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41193== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestSimpleImpedanceProblem -malloc_debug -malloc_dump -memory_info +==41193== Parent PID: 24036 +==41193== +==41193== +==41193== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41193== Open file descriptor 12: +==41193== at 0x6D7207D: pipe (pipe.c:29) +==41193== by 0x107A407D: ??? +==41193== by 0xC01A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41193== by 0x82ED418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41193== by 0x8286D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41193== by 0x6F7DD38: PetscInitialize (pinit.c:924) +==41193== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41193== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41193== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41193== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41193== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41193== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41193== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41193== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) +==41193== +==41193== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41193== at 0x6D76A1C: __open_nocancel (open64_nocancel.c:39) +==41193== by 0x6CFABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41193== by 0x66B0822: ??? +==41193== by 0x66B096F: ??? +==41193== by 0xC0BF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41193== by 0xC0BF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41193== by 0xC075922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41193== by 0xC01A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41193== by 0x82ED418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41193== by 0x8286D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41193== by 0x6F7DD38: PetscInitialize (pinit.c:924) +==41193== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41193== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41193== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41193== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41193== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41193== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41193== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41193== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) +==41193== +==41193== Open file descriptor 113: +==41193== +==41193== +==41193== Open file descriptor 110: +==41193== +==41193== +==41193== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleImpedanceProblem_valgrind.txt +==41193== +==41193== +==41193== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41193== +==41193== +==41193== +==41193== HEAP SUMMARY: +==41193== in use at exit: 618,247 bytes in 8,234 blocks +==41193== total heap usage: 7,105,342 allocs, 7,097,108 frees, 1,601,381,113 bytes allocated +==41193== +==41193== LEAK SUMMARY: +==41193== definitely lost: 0 bytes in 0 blocks +==41193== indirectly lost: 0 bytes in 0 blocks +==41193== possibly lost: 0 bytes in 0 blocks +==41193== still reachable: 24 bytes in 2 blocks +==41193== suppressed: 618,223 bytes in 8,232 blocks +==41193== Reachable blocks (those to which a pointer was found) are not shown. +==41193== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41193== +==41193== For lists of detected and suppressed errors, rerun with: -s +==41193== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-20_21-41-09/TestSimpleLinearEllipticSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSimpleLinearEllipticSolver_valgrind.txt new file mode 100644 index 000000000..0cc1d13f8 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSimpleLinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25054== Memcheck, a memory error detector +==25054== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25054== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25054== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleLinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==25054== Parent PID: 24036 +==25054== +==25054== +==25054== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25054== Open file descriptor 12: +==25054== at 0x84E707D: pipe (pipe.c:29) +==25054== by 0x104D507D: ??? +==25054== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25054== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25054== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25054== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25054== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25054== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25054== by 0x19C0B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25054== by 0x1968F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25054== by 0x1998A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25054== by 0x19979F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25054== by 0x199DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25054== by 0x1950F5: main (TestSimpleLinearEllipticSolver.cpp:18) +==25054== +==25054== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25054== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25054== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25054== by 0x7D3C822: ??? +==25054== by 0x7D3C96F: ??? +==25054== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25054== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25054== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25054== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25054== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25054== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25054== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25054== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25054== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25054== by 0x19C0B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25054== by 0x1968F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25054== by 0x1998A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25054== by 0x19979F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25054== by 0x199DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25054== by 0x1950F5: main (TestSimpleLinearEllipticSolver.cpp:18) +==25054== +==25054== Open file descriptor 113: +==25054== +==25054== +==25054== Open file descriptor 110: +==25054== +==25054== +==25054== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleLinearEllipticSolver_valgrind.txt +==25054== +==25054== +==25054== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25054== +==25054== +==25054== +==25054== HEAP SUMMARY: +==25054== in use at exit: 618,254 bytes in 8,238 blocks +==25054== total heap usage: 210,200 allocs, 201,962 frees, 1,356,096,125 bytes allocated +==25054== +==25054== LEAK SUMMARY: +==25054== definitely lost: 0 bytes in 0 blocks +==25054== indirectly lost: 0 bytes in 0 blocks +==25054== possibly lost: 0 bytes in 0 blocks +==25054== still reachable: 24 bytes in 2 blocks +==25054== suppressed: 618,230 bytes in 8,236 blocks +==25054== Reachable blocks (those to which a pointer was found) are not shown. +==25054== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25054== +==25054== For lists of detected and suppressed errors, rerun with: -s +==25054== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestSimpleLinearParabolicSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSimpleLinearParabolicSolver_valgrind.txt new file mode 100644 index 000000000..f861f57fd --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSimpleLinearParabolicSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25047== Memcheck, a memory error detector +==25047== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25047== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25047== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleLinearParabolicSolver -malloc_debug -malloc_dump -memory_info +==25047== Parent PID: 24036 +==25047== +==25047== +==25047== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25047== Open file descriptor 12: +==25047== at 0x855A07D: pipe (pipe.c:29) +==25047== by 0x104D507D: ??? +==25047== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25047== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25047== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25047== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==25047== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25047== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25047== by 0x1553A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25047== by 0x14FA6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25047== by 0x152E08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25047== by 0x152CA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25047== by 0x15333F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25047== by 0x14DE95: main (TestSimpleLinearParabolicSolver.cpp:19) +==25047== +==25047== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25047== at 0x855EA1C: __open_nocancel (open64_nocancel.c:39) +==25047== by 0x84E2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25047== by 0x7DAF822: ??? +==25047== by 0x7DAF96F: ??? +==25047== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25047== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25047== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25047== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25047== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25047== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25047== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==25047== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25047== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25047== by 0x1553A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25047== by 0x14FA6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25047== by 0x152E08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25047== by 0x152CA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25047== by 0x15333F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25047== by 0x14DE95: main (TestSimpleLinearParabolicSolver.cpp:19) +==25047== +==25047== Open file descriptor 113: +==25047== +==25047== +==25047== Open file descriptor 110: +==25047== +==25047== +==25047== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleLinearParabolicSolver_valgrind.txt +==25047== +==25047== +==25047== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25047== +==25047== +==25047== +==25047== HEAP SUMMARY: +==25047== in use at exit: 618,734 bytes in 8,248 blocks +==25047== total heap usage: 370,033 allocs, 361,785 frees, 1,429,167,100 bytes allocated +==25047== +==25047== LEAK SUMMARY: +==25047== definitely lost: 0 bytes in 0 blocks +==25047== indirectly lost: 0 bytes in 0 blocks +==25047== possibly lost: 0 bytes in 0 blocks +==25047== still reachable: 24 bytes in 2 blocks +==25047== suppressed: 618,710 bytes in 8,246 blocks +==25047== Reachable blocks (those to which a pointer was found) are not shown. +==25047== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25047== +==25047== For lists of detected and suppressed errors, rerun with: -s +==25047== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestSimpleNonlinearEllipticSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSimpleNonlinearEllipticSolver_valgrind.txt new file mode 100644 index 000000000..9887342ad --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSimpleNonlinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25064== Memcheck, a memory error detector +==25064== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25064== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25064== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleNonlinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==25064== Parent PID: 24036 +==25064== +==25064== +==25064== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25064== Open file descriptor 12: +==25064== at 0x84E707D: pipe (pipe.c:29) +==25064== by 0x104D507D: ??? +==25064== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25064== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25064== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25064== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25064== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25064== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25064== by 0x14D424: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25064== by 0x14766F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25064== by 0x14A908: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25064== by 0x14A7A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25064== by 0x14AE3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25064== by 0x1458D5: main (TestSimpleNonlinearEllipticSolver.cpp:19) +==25064== +==25064== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25064== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25064== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25064== by 0x7D3C822: ??? +==25064== by 0x7D3C96F: ??? +==25064== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25064== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25064== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25064== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25064== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25064== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25064== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25064== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25064== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25064== by 0x14D424: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25064== by 0x14766F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25064== by 0x14A908: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25064== by 0x14A7A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25064== by 0x14AE3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25064== by 0x1458D5: main (TestSimpleNonlinearEllipticSolver.cpp:19) +==25064== +==25064== Open file descriptor 113: +==25064== +==25064== +==25064== Open file descriptor 110: +==25064== +==25064== +==25064== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleNonlinearEllipticSolver_valgrind.txt +==25064== +==25064== +==25064== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25064== +==25064== +==25064== +==25064== HEAP SUMMARY: +==25064== in use at exit: 618,183 bytes in 8,234 blocks +==25064== total heap usage: 390,360 allocs, 382,126 frees, 1,347,162,083 bytes allocated +==25064== +==25064== LEAK SUMMARY: +==25064== definitely lost: 0 bytes in 0 blocks +==25064== indirectly lost: 0 bytes in 0 blocks +==25064== possibly lost: 0 bytes in 0 blocks +==25064== still reachable: 24 bytes in 2 blocks +==25064== suppressed: 618,159 bytes in 8,232 blocks +==25064== Reachable blocks (those to which a pointer was found) are not shown. +==25064== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25064== +==25064== For lists of detected and suppressed errors, rerun with: -s +==25064== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-20_21-41-09/TestSimpleTargetAreaModifier_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSimpleTargetAreaModifier_valgrind.txt new file mode 100644 index 000000000..079a6effb --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSimpleTargetAreaModifier_valgrind.txt @@ -0,0 +1,73 @@ +==38384== Memcheck, a memory error detector +==38384== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==38384== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==38384== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimpleTargetAreaModifier -malloc_debug -malloc_dump -memory_info +==38384== Parent PID: 24036 +==38384== +==38384== +==38384== FILE DESCRIPTORS: 9 open (3 std) at exit. +==38384== Open file descriptor 12: +==38384== at 0x10CF207D: pipe (pipe.c:29) +==38384== by 0x196AD07D: ??? +==38384== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==38384== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==38384== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==38384== by 0xF28AD38: PetscInitialize (pinit.c:924) +==38384== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==38384== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==38384== by 0x139D63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==38384== by 0x1324DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==38384== by 0x1357DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==38384== by 0x13567C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==38384== by 0x135D13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==38384== by 0x130905: main (TestSimpleTargetAreaModifier.cpp:19) +==38384== +==38384== Open file descriptor 8: /dev/shm/open_mpi.0000 +==38384== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==38384== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==38384== by 0xF137822: ??? +==38384== by 0xF13796F: ??? +==38384== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==38384== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==38384== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==38384== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==38384== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==38384== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==38384== by 0xF28AD38: PetscInitialize (pinit.c:924) +==38384== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==38384== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==38384== by 0x139D63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==38384== by 0x1324DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==38384== by 0x1357DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==38384== by 0x13567C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==38384== by 0x135D13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==38384== by 0x130905: main (TestSimpleTargetAreaModifier.cpp:19) +==38384== +==38384== Open file descriptor 113: +==38384== +==38384== +==38384== Open file descriptor 110: +==38384== +==38384== +==38384== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleTargetAreaModifier_valgrind.txt +==38384== +==38384== +==38384== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==38384== +==38384== +==38384== +==38384== HEAP SUMMARY: +==38384== in use at exit: 618,350 bytes in 8,239 blocks +==38384== total heap usage: 588,724 allocs, 580,485 frees, 1,437,136,913 bytes allocated +==38384== +==38384== LEAK SUMMARY: +==38384== definitely lost: 0 bytes in 0 blocks +==38384== indirectly lost: 0 bytes in 0 blocks +==38384== possibly lost: 0 bytes in 0 blocks +==38384== still reachable: 56 bytes in 3 blocks +==38384== suppressed: 618,294 bytes in 8,236 blocks +==38384== Reachable blocks (those to which a pointer was found) are not shown. +==38384== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==38384== +==38384== For lists of detected and suppressed errors, rerun with: -s +==38384== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestSimulationTime_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSimulationTime_valgrind.txt new file mode 100644 index 000000000..a010c6d8f --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSimulationTime_valgrind.txt @@ -0,0 +1,73 @@ +==25728== Memcheck, a memory error detector +==25728== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25728== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25728== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationTime -malloc_debug -malloc_dump -memory_info +==25728== Parent PID: 24036 +==25728== +==25728== +==25728== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25728== Open file descriptor 12: +==25728== at 0xD89B07D: pipe (pipe.c:29) +==25728== by 0x196AC07D: ??? +==25728== by 0x14C654CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25728== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25728== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25728== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25728== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25728== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25728== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25728== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25728== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25728== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25728== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25728== by 0x154225: main (TestSimulationTime.cpp:19) +==25728== +==25728== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25728== at 0xD89FA1C: __open_nocancel (open64_nocancel.c:39) +==25728== by 0xD823BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25728== by 0xD4DA822: ??? +==25728== by 0xD4DA96F: ??? +==25728== by 0x14D0A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25728== by 0x14D0A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25728== by 0x14CC0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25728== by 0x14C652DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25728== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25728== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25728== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25728== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25728== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25728== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25728== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25728== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25728== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25728== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25728== by 0x154225: main (TestSimulationTime.cpp:19) +==25728== +==25728== Open file descriptor 113: +==25728== +==25728== +==25728== Open file descriptor 110: +==25728== +==25728== +==25728== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationTime_valgrind.txt +==25728== +==25728== +==25728== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25728== +==25728== +==25728== +==25728== HEAP SUMMARY: +==25728== in use at exit: 618,318 bytes in 8,238 blocks +==25728== total heap usage: 53,204 allocs, 44,966 frees, 1,338,921,228 bytes allocated +==25728== +==25728== LEAK SUMMARY: +==25728== definitely lost: 0 bytes in 0 blocks +==25728== indirectly lost: 0 bytes in 0 blocks +==25728== possibly lost: 0 bytes in 0 blocks +==25728== still reachable: 24 bytes in 2 blocks +==25728== suppressed: 618,294 bytes in 8,236 blocks +==25728== Reachable blocks (those to which a pointer was found) are not shown. +==25728== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25728== +==25728== For lists of detected and suppressed errors, rerun with: -s +==25728== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..97f1a065c --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25575== Memcheck, a memory error detector +==25575== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25575== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25575== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithEllipticBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25575== Parent PID: 24036 +==25575== +==25575== +==25575== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25575== Open file descriptor 12: +==25575== at 0x1104D07D: pipe (pipe.c:29) +==25575== by 0x196AC07D: ??? +==25575== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25575== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25575== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25575== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25575== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25575== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25575== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25575== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25575== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25575== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25575== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25575== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) +==25575== +==25575== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25575== at 0x11051A1C: __open_nocancel (open64_nocancel.c:39) +==25575== by 0x10FD5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25575== by 0x10852822: ??? +==25575== by 0x1085296F: ??? +==25575== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25575== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25575== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25575== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25575== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25575== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25575== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25575== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25575== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25575== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25575== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25575== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25575== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25575== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25575== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) +==25575== +==25575== Open file descriptor 113: +==25575== +==25575== +==25575== Open file descriptor 110: +==25575== +==25575== +==25575== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt +==25575== +==25575== +==25575== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25575== +==25575== +==25575== +==25575== HEAP SUMMARY: +==25575== in use at exit: 618,279 bytes in 8,235 blocks +==25575== total heap usage: 7,729,908 allocs, 7,721,673 frees, 2,182,172,707 bytes allocated +==25575== +==25575== LEAK SUMMARY: +==25575== definitely lost: 0 bytes in 0 blocks +==25575== indirectly lost: 0 bytes in 0 blocks +==25575== possibly lost: 0 bytes in 0 blocks +==25575== still reachable: 56 bytes in 3 blocks +==25575== suppressed: 618,223 bytes in 8,232 blocks +==25575== Reachable blocks (those to which a pointer was found) are not shown. +==25575== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25575== +==25575== For lists of detected and suppressed errors, rerun with: -s +==25575== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 32 from 32) diff --git a/log-files/2024-09-20_21-41-09/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..d74c75889 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25600== Memcheck, a memory error detector +==25600== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25600== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25600== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithEllipticGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25600== Parent PID: 24036 +==25600== +==25600== +==25600== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25600== Open file descriptor 12: +==25600== at 0x1104D07D: pipe (pipe.c:29) +==25600== by 0x196AC07D: ??? +==25600== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25600== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25600== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25600== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25600== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25600== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25600== by 0x12F3BB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25600== by 0x12A2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25600== by 0x12CDFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25600== by 0x12CC9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25600== by 0x12D333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25600== by 0x1286D5: main (TestSimulationsWithEllipticGrowingDomainPdeModifier.cpp:19) +==25600== +==25600== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25600== at 0x11051A1C: __open_nocancel (open64_nocancel.c:39) +==25600== by 0x10FD5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25600== by 0x10852822: ??? +==25600== by 0x1085296F: ??? +==25600== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25600== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25600== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25600== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25600== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25600== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25600== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25600== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25600== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25600== by 0x12F3BB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25600== by 0x12A2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25600== by 0x12CDFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25600== by 0x12CC9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25600== by 0x12D333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25600== by 0x1286D5: main (TestSimulationsWithEllipticGrowingDomainPdeModifier.cpp:19) +==25600== +==25600== Open file descriptor 113: +==25600== +==25600== +==25600== Open file descriptor 110: +==25600== +==25600== +==25600== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt +==25600== +==25600== +==25600== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25600== +==25600== +==25600== +==25600== HEAP SUMMARY: +==25600== in use at exit: 618,279 bytes in 8,235 blocks +==25600== total heap usage: 5,204,530 allocs, 5,196,295 frees, 2,319,825,905 bytes allocated +==25600== +==25600== LEAK SUMMARY: +==25600== definitely lost: 0 bytes in 0 blocks +==25600== indirectly lost: 0 bytes in 0 blocks +==25600== possibly lost: 0 bytes in 0 blocks +==25600== still reachable: 56 bytes in 3 blocks +==25600== suppressed: 618,223 bytes in 8,232 blocks +==25600== Reachable blocks (those to which a pointer was found) are not shown. +==25600== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25600== +==25600== For lists of detected and suppressed errors, rerun with: -s +==25600== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..391ca1f90 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25640== Memcheck, a memory error detector +==25640== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25640== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25640== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithParabolicBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25640== Parent PID: 24036 +==25640== +==25640== +==25640== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25640== Open file descriptor 12: +==25640== at 0x1104D07D: pipe (pipe.c:29) +==25640== by 0x196AC07D: ??? +==25640== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25640== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25640== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25640== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25640== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25640== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25640== by 0x129501: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25640== by 0x1249F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25640== by 0x126F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25640== by 0x126E65: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25640== by 0x127479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25640== by 0x1231F5: main (TestSimulationsWithParabolicBoxDomainPdeModifier.cpp:18) +==25640== +==25640== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25640== at 0x11051A1C: __open_nocancel (open64_nocancel.c:39) +==25640== by 0x10FD5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25640== by 0x10852822: ??? +==25640== by 0x1085296F: ??? +==25640== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25640== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25640== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25640== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25640== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25640== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25640== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25640== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25640== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25640== by 0x129501: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25640== by 0x1249F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25640== by 0x126F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25640== by 0x126E65: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25640== by 0x127479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25640== by 0x1231F5: main (TestSimulationsWithParabolicBoxDomainPdeModifier.cpp:18) +==25640== +==25640== Open file descriptor 113: +==25640== +==25640== +==25640== Open file descriptor 110: +==25640== +==25640== +==25640== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt +==25640== +==25640== +==25640== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25640== +==25640== +==25640== +==25640== HEAP SUMMARY: +==25640== in use at exit: 618,279 bytes in 8,235 blocks +==25640== total heap usage: 4,507,751 allocs, 4,499,516 frees, 1,826,815,460 bytes allocated +==25640== +==25640== LEAK SUMMARY: +==25640== definitely lost: 0 bytes in 0 blocks +==25640== indirectly lost: 0 bytes in 0 blocks +==25640== possibly lost: 0 bytes in 0 blocks +==25640== still reachable: 56 bytes in 3 blocks +==25640== suppressed: 618,223 bytes in 8,232 blocks +==25640== Reachable blocks (those to which a pointer was found) are not shown. +==25640== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25640== +==25640== For lists of detected and suppressed errors, rerun with: -s +==25640== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..f4bff21de --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25675== Memcheck, a memory error detector +==25675== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25675== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25675== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithParabolicGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25675== Parent PID: 24036 +==25675== +==25675== +==25675== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25675== Open file descriptor 12: +==25675== at 0x1104D07D: pipe (pipe.c:29) +==25675== by 0x196AC07D: ??? +==25675== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25675== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25675== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25675== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25675== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25675== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25675== by 0x128F89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25675== by 0x123EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25675== by 0x1269CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25675== by 0x12686A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25675== by 0x126F01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25675== by 0x1222D5: main (TestSimulationsWithParabolicGrowingDomainPdeModifier.cpp:19) +==25675== +==25675== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25675== at 0x11051A1C: __open_nocancel (open64_nocancel.c:39) +==25675== by 0x10FD5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25675== by 0x10852822: ??? +==25675== by 0x1085296F: ??? +==25675== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25675== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25675== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25675== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25675== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25675== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25675== by 0xF5C2D38: PetscInitialize (pinit.c:924) +==25675== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25675== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25675== by 0x128F89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25675== by 0x123EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25675== by 0x1269CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25675== by 0x12686A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25675== by 0x126F01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25675== by 0x1222D5: main (TestSimulationsWithParabolicGrowingDomainPdeModifier.cpp:19) +==25675== +==25675== Open file descriptor 113: +==25675== +==25675== +==25675== Open file descriptor 110: +==25675== +==25675== +==25675== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt +==25675== +==25675== +==25675== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25675== +==25675== +==25675== +==25675== HEAP SUMMARY: +==25675== in use at exit: 618,279 bytes in 8,235 blocks +==25675== total heap usage: 5,580,604 allocs, 5,572,369 frees, 1,885,910,835 bytes allocated +==25675== +==25675== LEAK SUMMARY: +==25675== definitely lost: 0 bytes in 0 blocks +==25675== indirectly lost: 0 bytes in 0 blocks +==25675== possibly lost: 0 bytes in 0 blocks +==25675== still reachable: 56 bytes in 3 blocks +==25675== suppressed: 618,223 bytes in 8,232 blocks +==25675== Reachable blocks (those to which a pointer was found) are not shown. +==25675== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25675== +==25675== For lists of detected and suppressed errors, rerun with: -s +==25675== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestSingleOdeWntCellCycleModel_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSingleOdeWntCellCycleModel_valgrind.txt new file mode 100644 index 000000000..6d869b749 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSingleOdeWntCellCycleModel_valgrind.txt @@ -0,0 +1,73 @@ +==40448== Memcheck, a memory error detector +==40448== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40448== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40448== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSingleOdeWntCellCycleModel -malloc_debug -malloc_dump -memory_info +==40448== Parent PID: 24036 +==40448== +==40448== +==40448== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40448== Open file descriptor 12: +==40448== at 0x1095707D: pipe (pipe.c:29) +==40448== by 0x1B36D07D: ??? +==40448== by 0x154C04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40448== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40448== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40448== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40448== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40448== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40448== by 0x18BB23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40448== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40448== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40448== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40448== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40448== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) +==40448== +==40448== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40448== at 0x1095BA1C: __open_nocancel (open64_nocancel.c:39) +==40448== by 0x108DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40448== by 0xED9C822: ??? +==40448== by 0xED9C96F: ??? +==40448== by 0x155656DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40448== by 0x15565938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40448== by 0x1551B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40448== by 0x154C02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40448== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40448== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40448== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40448== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40448== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40448== by 0x18BB23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40448== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40448== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40448== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40448== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40448== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) +==40448== +==40448== Open file descriptor 113: +==40448== +==40448== +==40448== Open file descriptor 110: +==40448== +==40448== +==40448== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSingleOdeWntCellCycleModel_valgrind.txt +==40448== +==40448== +==40448== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40448== +==40448== +==40448== +==40448== HEAP SUMMARY: +==40448== in use at exit: 618,510 bytes in 8,241 blocks +==40448== total heap usage: 263,090 allocs, 254,849 frees, 1,357,294,582 bytes allocated +==40448== +==40448== LEAK SUMMARY: +==40448== definitely lost: 0 bytes in 0 blocks +==40448== indirectly lost: 0 bytes in 0 blocks +==40448== possibly lost: 0 bytes in 0 blocks +==40448== still reachable: 200 bytes in 5 blocks +==40448== suppressed: 618,310 bytes in 8,236 blocks +==40448== Reachable blocks (those to which a pointer was found) are not shown. +==40448== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40448== +==40448== For lists of detected and suppressed errors, rerun with: -s +==40448== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestSloughingCellKillers_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSloughingCellKillers_valgrind.txt new file mode 100644 index 000000000..5f9fb65f1 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSloughingCellKillers_valgrind.txt @@ -0,0 +1,73 @@ +==40592== Memcheck, a memory error detector +==40592== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40592== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40592== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSloughingCellKillers -malloc_debug -malloc_dump -memory_info +==40592== Parent PID: 24036 +==40592== +==40592== +==40592== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40592== Open file descriptor 12: +==40592== at 0x1269907D: pipe (pipe.c:29) +==40592== by 0x1B36D07D: ??? +==40592== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40592== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40592== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40592== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40592== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40592== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40592== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40592== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40592== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40592== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40592== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40592== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) +==40592== +==40592== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40592== at 0x1269DA1C: __open_nocancel (open64_nocancel.c:39) +==40592== by 0x12621BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40592== by 0x109F7822: ??? +==40592== by 0x109F796F: ??? +==40592== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40592== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40592== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40592== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40592== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40592== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40592== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40592== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40592== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40592== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40592== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40592== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40592== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40592== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40592== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) +==40592== +==40592== Open file descriptor 113: +==40592== +==40592== +==40592== Open file descriptor 110: +==40592== +==40592== +==40592== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSloughingCellKillers_valgrind.txt +==40592== +==40592== +==40592== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40592== +==40592== +==40592== +==40592== HEAP SUMMARY: +==40592== in use at exit: 618,366 bytes in 8,239 blocks +==40592== total heap usage: 100,673 allocs, 92,434 frees, 1,342,469,908 bytes allocated +==40592== +==40592== LEAK SUMMARY: +==40592== definitely lost: 0 bytes in 0 blocks +==40592== indirectly lost: 0 bytes in 0 blocks +==40592== possibly lost: 0 bytes in 0 blocks +==40592== still reachable: 56 bytes in 3 blocks +==40592== suppressed: 618,310 bytes in 8,236 blocks +==40592== Reachable blocks (those to which a pointer was found) are not shown. +==40592== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40592== +==40592== For lists of detected and suppressed errors, rerun with: -s +==40592== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestSolveLaplacianWithQuadratics_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSolveLaplacianWithQuadratics_valgrind.txt new file mode 100644 index 000000000..ae68f2b09 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSolveLaplacianWithQuadratics_valgrind.txt @@ -0,0 +1,73 @@ +==25080== Memcheck, a memory error detector +==25080== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25080== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25080== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolveLaplacianWithQuadratics -malloc_debug -malloc_dump -memory_info +==25080== Parent PID: 24036 +==25080== +==25080== +==25080== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25080== Open file descriptor 12: +==25080== at 0x84E707D: pipe (pipe.c:29) +==25080== by 0x104D507D: ??? +==25080== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25080== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25080== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25080== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25080== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25080== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25080== by 0x15D32E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25080== by 0x1582D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25080== by 0x15AFE6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25080== by 0x15AEE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25080== by 0x15B4F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25080== by 0x156AD5: main (TestSolveLaplacianWithQuadratics.cpp:18) +==25080== +==25080== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25080== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25080== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25080== by 0x7D3C822: ??? +==25080== by 0x7D3C96F: ??? +==25080== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25080== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25080== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25080== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25080== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25080== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25080== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25080== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25080== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25080== by 0x15D32E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25080== by 0x1582D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25080== by 0x15AFE6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25080== by 0x15AEE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25080== by 0x15B4F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25080== by 0x156AD5: main (TestSolveLaplacianWithQuadratics.cpp:18) +==25080== +==25080== Open file descriptor 113: +==25080== +==25080== +==25080== Open file descriptor 110: +==25080== +==25080== +==25080== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolveLaplacianWithQuadratics_valgrind.txt +==25080== +==25080== +==25080== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25080== +==25080== +==25080== +==25080== HEAP SUMMARY: +==25080== in use at exit: 618,254 bytes in 8,238 blocks +==25080== total heap usage: 317,734 allocs, 309,496 frees, 1,357,888,039 bytes allocated +==25080== +==25080== LEAK SUMMARY: +==25080== definitely lost: 0 bytes in 0 blocks +==25080== indirectly lost: 0 bytes in 0 blocks +==25080== possibly lost: 0 bytes in 0 blocks +==25080== still reachable: 24 bytes in 2 blocks +==25080== suppressed: 618,230 bytes in 8,236 blocks +==25080== Reachable blocks (those to which a pointer was found) are not shown. +==25080== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25080== +==25080== For lists of detected and suppressed errors, rerun with: -s +==25080== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestSolvingCoupledPdes_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSolvingCoupledPdes_valgrind.txt new file mode 100644 index 000000000..258eb4d58 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSolvingCoupledPdes_valgrind.txt @@ -0,0 +1,73 @@ +==25066== Memcheck, a memory error detector +==25066== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25066== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25066== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolvingCoupledPdes -malloc_debug -malloc_dump -memory_info +==25066== Parent PID: 24036 +==25066== +==25066== +==25066== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25066== Open file descriptor 12: +==25066== at 0x84E707D: pipe (pipe.c:29) +==25066== by 0x104D507D: ??? +==25066== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25066== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25066== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25066== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25066== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25066== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25066== by 0x143C06: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25066== by 0x13ECB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25066== by 0x1418BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25066== by 0x1417B9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25066== by 0x141DCD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25066== by 0x13D4B5: main (TestSolvingCoupledPdes.cpp:18) +==25066== +==25066== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25066== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25066== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25066== by 0x7D3C822: ??? +==25066== by 0x7D3C96F: ??? +==25066== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25066== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25066== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25066== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25066== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25066== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25066== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25066== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25066== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25066== by 0x143C06: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25066== by 0x13ECB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25066== by 0x1418BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25066== by 0x1417B9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25066== by 0x141DCD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25066== by 0x13D4B5: main (TestSolvingCoupledPdes.cpp:18) +==25066== +==25066== Open file descriptor 113: +==25066== +==25066== +==25066== Open file descriptor 110: +==25066== +==25066== +==25066== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingCoupledPdes_valgrind.txt +==25066== +==25066== +==25066== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25066== +==25066== +==25066== +==25066== HEAP SUMMARY: +==25066== in use at exit: 618,254 bytes in 8,238 blocks +==25066== total heap usage: 362,665 allocs, 354,427 frees, 1,353,739,513 bytes allocated +==25066== +==25066== LEAK SUMMARY: +==25066== definitely lost: 0 bytes in 0 blocks +==25066== indirectly lost: 0 bytes in 0 blocks +==25066== possibly lost: 0 bytes in 0 blocks +==25066== still reachable: 24 bytes in 2 blocks +==25066== suppressed: 618,230 bytes in 8,236 blocks +==25066== Reachable blocks (those to which a pointer was found) are not shown. +==25066== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25066== +==25066== For lists of detected and suppressed errors, rerun with: -s +==25066== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestSolvingNonlinearPdesTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSolvingNonlinearPdesTutorial_valgrind.txt new file mode 100644 index 000000000..b52d0657d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSolvingNonlinearPdesTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==25087== Memcheck, a memory error detector +==25087== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25087== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25087== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolvingNonlinearPdesTutorial -malloc_debug -malloc_dump -memory_info +==25087== Parent PID: 24036 +==25087== +==25087== +==25087== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25087== Open file descriptor 12: +==25087== at 0x84E707D: pipe (pipe.c:29) +==25087== by 0x104D507D: ??? +==25087== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25087== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25087== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25087== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25087== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25087== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25087== by 0x1389EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25087== by 0x133AFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25087== by 0x1366A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25087== by 0x1365A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25087== by 0x136BB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25087== by 0x1322D5: main (TestSolvingNonlinearPdesTutorial.cpp:18) +==25087== +==25087== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25087== at 0x84EBA1C: __open_nocancel (open64_nocancel.c:39) +==25087== by 0x846FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25087== by 0x7D3C822: ??? +==25087== by 0x7D3C96F: ??? +==25087== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25087== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25087== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25087== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25087== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25087== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25087== by 0x6AACD38: PetscInitialize (pinit.c:924) +==25087== by 0x69831D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25087== by 0x6983227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25087== by 0x1389EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25087== by 0x133AFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25087== by 0x1366A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25087== by 0x1365A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25087== by 0x136BB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25087== by 0x1322D5: main (TestSolvingNonlinearPdesTutorial.cpp:18) +==25087== +==25087== Open file descriptor 113: +==25087== +==25087== +==25087== Open file descriptor 110: +==25087== +==25087== +==25087== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingNonlinearPdesTutorial_valgrind.txt +==25087== +==25087== +==25087== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25087== +==25087== +==25087== +==25087== HEAP SUMMARY: +==25087== in use at exit: 618,254 bytes in 8,238 blocks +==25087== total heap usage: 243,598 allocs, 235,360 frees, 1,341,284,872 bytes allocated +==25087== +==25087== LEAK SUMMARY: +==25087== definitely lost: 0 bytes in 0 blocks +==25087== indirectly lost: 0 bytes in 0 blocks +==25087== possibly lost: 0 bytes in 0 blocks +==25087== still reachable: 24 bytes in 2 blocks +==25087== suppressed: 618,230 bytes in 8,236 blocks +==25087== Reachable blocks (those to which a pointer was found) are not shown. +==25087== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25087== +==25087== For lists of detected and suppressed errors, rerun with: -s +==25087== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestSolvingOdesTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSolvingOdesTutorial_valgrind.txt new file mode 100644 index 000000000..547df7d9d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSolvingOdesTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==24985== Memcheck, a memory error detector +==24985== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24985== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24985== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestSolvingOdesTutorial -malloc_debug -malloc_dump -memory_info +==24985== Parent PID: 24036 +==24985== +==24985== +==24985== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24985== Open file descriptor 12: +==24985== at 0x63C507D: pipe (pipe.c:29) +==24985== by 0xB1E407D: ??? +==24985== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24985== by 0x5FFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24985== by 0x5F93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24985== by 0x4C65D38: PetscInitialize (pinit.c:924) +==24985== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24985== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24985== by 0x118D39: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24985== by 0x114693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24985== by 0x1169AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24985== by 0x1168A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24985== by 0x116EBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24985== by 0x1128D5: main (TestSolvingOdesTutorial.cpp:18) +==24985== +==24985== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24985== at 0x63C9A1C: __open_nocancel (open64_nocancel.c:39) +==24985== by 0x634DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24985== by 0x5EF5822: ??? +==24985== by 0x5EF596F: ??? +==24985== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24985== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24985== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24985== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24985== by 0x5FFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24985== by 0x5F93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24985== by 0x4C65D38: PetscInitialize (pinit.c:924) +==24985== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24985== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24985== by 0x118D39: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24985== by 0x114693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24985== by 0x1169AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24985== by 0x1168A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24985== by 0x116EBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24985== by 0x1128D5: main (TestSolvingOdesTutorial.cpp:18) +==24985== +==24985== Open file descriptor 113: +==24985== +==24985== +==24985== Open file descriptor 110: +==24985== +==24985== +==24985== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingOdesTutorial_valgrind.txt +==24985== +==24985== +==24985== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24985== +==24985== +==24985== +==24985== HEAP SUMMARY: +==24985== in use at exit: 617,902 bytes in 8,238 blocks +==24985== total heap usage: 45,182 allocs, 36,944 frees, 1,338,243,864 bytes allocated +==24985== +==24985== LEAK SUMMARY: +==24985== definitely lost: 0 bytes in 0 blocks +==24985== indirectly lost: 0 bytes in 0 blocks +==24985== possibly lost: 0 bytes in 0 blocks +==24985== still reachable: 24 bytes in 2 blocks +==24985== suppressed: 617,878 bytes in 8,236 blocks +==24985== Reachable blocks (those to which a pointer was found) are not shown. +==24985== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24985== +==24985== For lists of detected and suppressed errors, rerun with: -s +==24985== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestSolvingStiffOdeSystems_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSolvingStiffOdeSystems_valgrind.txt new file mode 100644 index 000000000..1ecb8a1b5 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSolvingStiffOdeSystems_valgrind.txt @@ -0,0 +1,73 @@ +==24966== Memcheck, a memory error detector +==24966== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24966== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24966== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestSolvingStiffOdeSystems -malloc_debug -malloc_dump -memory_info +==24966== Parent PID: 24036 +==24966== +==24966== +==24966== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24966== Open file descriptor 12: +==24966== at 0x4F1007D: pipe (pipe.c:29) +==24966== by 0xB1E607D: ??? +==24966== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24966== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24966== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24966== by 0x5308D38: PetscInitialize (pinit.c:924) +==24966== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24966== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24966== by 0x118D00: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24966== by 0x114431: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24966== by 0x1167AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24966== by 0x1166A9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24966== by 0x116CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24966== by 0x112835: main (TestSolvingStiffOdeSystems.cpp:18) +==24966== +==24966== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24966== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39) +==24966== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24966== by 0x4B77822: ??? +==24966== by 0x4B7796F: ??? +==24966== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24966== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24966== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24966== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24966== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24966== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24966== by 0x5308D38: PetscInitialize (pinit.c:924) +==24966== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24966== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24966== by 0x118D00: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24966== by 0x114431: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24966== by 0x1167AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24966== by 0x1166A9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24966== by 0x116CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24966== by 0x112835: main (TestSolvingStiffOdeSystems.cpp:18) +==24966== +==24966== Open file descriptor 113: +==24966== +==24966== +==24966== Open file descriptor 110: +==24966== +==24966== +==24966== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingStiffOdeSystems_valgrind.txt +==24966== +==24966== +==24966== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24966== +==24966== +==24966== +==24966== HEAP SUMMARY: +==24966== in use at exit: 617,902 bytes in 8,238 blocks +==24966== total heap usage: 47,082 allocs, 38,844 frees, 1,338,228,012 bytes allocated +==24966== +==24966== LEAK SUMMARY: +==24966== definitely lost: 0 bytes in 0 blocks +==24966== indirectly lost: 0 bytes in 0 blocks +==24966== possibly lost: 0 bytes in 0 blocks +==24966== still reachable: 24 bytes in 2 blocks +==24966== suppressed: 617,878 bytes in 8,236 blocks +==24966== Reachable blocks (those to which a pointer was found) are not shown. +==24966== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24966== +==24966== For lists of detected and suppressed errors, rerun with: -s +==24966== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestSpiralWaveAndPhase_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSpiralWaveAndPhase_valgrind.txt new file mode 100644 index 000000000..0ec2981a9 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSpiralWaveAndPhase_valgrind.txt @@ -0,0 +1,73 @@ +==43694== Memcheck, a memory error detector +==43694== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43694== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43694== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestSpiralWaveAndPhase -malloc_debug -malloc_dump -memory_info +==43694== Parent PID: 24036 +==43694== +==43694== +==43694== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43694== Open file descriptor 12: +==43694== at 0x84CB07D: pipe (pipe.c:29) +==43694== by 0x104D507D: ??? +==43694== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43694== by 0x8B4E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43694== by 0x8AE7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43694== by 0x6A90D38: PetscInitialize (pinit.c:924) +==43694== by 0x69671D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43694== by 0x6967227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43694== by 0x119000: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43694== by 0x1147B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43694== by 0x116FAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43694== by 0x116EA7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43694== by 0x1174BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43694== by 0x112FB5: main (TestSpiralWaveAndPhase.cpp:18) +==43694== +==43694== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43694== at 0x84CFA1C: __open_nocancel (open64_nocancel.c:39) +==43694== by 0x8453BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43694== by 0x7D20822: ??? +==43694== by 0x7D2096F: ??? +==43694== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43694== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43694== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43694== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43694== by 0x8B4E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43694== by 0x8AE7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43694== by 0x6A90D38: PetscInitialize (pinit.c:924) +==43694== by 0x69671D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43694== by 0x6967227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43694== by 0x119000: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43694== by 0x1147B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43694== by 0x116FAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43694== by 0x116EA7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43694== by 0x1174BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43694== by 0x112FB5: main (TestSpiralWaveAndPhase.cpp:18) +==43694== +==43694== Open file descriptor 113: +==43694== +==43694== +==43694== Open file descriptor 110: +==43694== +==43694== +==43694== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSpiralWaveAndPhase_valgrind.txt +==43694== +==43694== +==43694== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43694== +==43694== +==43694== +==43694== HEAP SUMMARY: +==43694== in use at exit: 618,663 bytes in 8,244 blocks +==43694== total heap usage: 4,351,541 allocs, 4,343,297 frees, 1,902,290,242 bytes allocated +==43694== +==43694== LEAK SUMMARY: +==43694== definitely lost: 0 bytes in 0 blocks +==43694== indirectly lost: 0 bytes in 0 blocks +==43694== possibly lost: 0 bytes in 0 blocks +==43694== still reachable: 24 bytes in 2 blocks +==43694== suppressed: 618,639 bytes in 8,242 blocks +==43694== Reachable blocks (those to which a pointer was found) are not shown. +==43694== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43694== +==43694== For lists of detected and suppressed errors, rerun with: -s +==43694== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 31) diff --git a/log-files/2024-09-20_21-41-09/TestSteadyStateRunner_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSteadyStateRunner_valgrind.txt new file mode 100644 index 000000000..7639ef388 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSteadyStateRunner_valgrind.txt @@ -0,0 +1,73 @@ +==42888== Memcheck, a memory error detector +==42888== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42888== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42888== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestSteadyStateRunner -malloc_debug -malloc_dump -memory_info +==42888== Parent PID: 24036 +==42888== +==42888== +==42888== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42888== Open file descriptor 12: +==42888== at 0x9C6507D: pipe (pipe.c:29) +==42888== by 0x1432407D: ??? +==42888== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42888== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42888== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42888== by 0x8505D38: PetscInitialize (pinit.c:924) +==42888== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42888== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42888== by 0x115FF5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42888== by 0x1114AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42888== by 0x113CD0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42888== by 0x113B70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42888== by 0x114207: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42888== by 0x10F8D5: main (TestSteadyStateRunner.cpp:19) +==42888== +==42888== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42888== at 0x9C69A1C: __open_nocancel (open64_nocancel.c:39) +==42888== by 0x9BEDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42888== by 0x9795822: ??? +==42888== by 0x979596F: ??? +==42888== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42888== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42888== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42888== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42888== by 0x9898418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42888== by 0x9831D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42888== by 0x8505D38: PetscInitialize (pinit.c:924) +==42888== by 0x83DC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42888== by 0x83DC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42888== by 0x115FF5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42888== by 0x1114AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42888== by 0x113CD0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42888== by 0x113B70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42888== by 0x114207: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42888== by 0x10F8D5: main (TestSteadyStateRunner.cpp:19) +==42888== +==42888== Open file descriptor 113: +==42888== +==42888== +==42888== Open file descriptor 110: +==42888== +==42888== +==42888== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSteadyStateRunner_valgrind.txt +==42888== +==42888== +==42888== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42888== +==42888== +==42888== +==42888== HEAP SUMMARY: +==42888== in use at exit: 618,263 bytes in 8,234 blocks +==42888== total heap usage: 50,557 allocs, 42,323 frees, 1,338,885,288 bytes allocated +==42888== +==42888== LEAK SUMMARY: +==42888== definitely lost: 0 bytes in 0 blocks +==42888== indirectly lost: 0 bytes in 0 blocks +==42888== possibly lost: 0 bytes in 0 blocks +==42888== still reachable: 24 bytes in 2 blocks +==42888== suppressed: 618,239 bytes in 8,232 blocks +==42888== Reachable blocks (those to which a pointer was found) are not shown. +==42888== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42888== +==42888== For lists of detected and suppressed errors, rerun with: -s +==42888== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-20_21-41-09/TestStepSizeException_valgrind.txt b/log-files/2024-09-20_21-41-09/TestStepSizeException_valgrind.txt new file mode 100644 index 000000000..53a00c5a5 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestStepSizeException_valgrind.txt @@ -0,0 +1,73 @@ +==39601== Memcheck, a memory error detector +==39601== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39601== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39601== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestStepSizeException -malloc_debug -malloc_dump -memory_info +==39601== Parent PID: 24036 +==39601== +==39601== +==39601== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39601== Open file descriptor 12: +==39601== at 0x4CB407D: pipe (pipe.c:29) +==39601== by 0xAEA507D: ??? +==39601== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39601== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39601== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39601== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==39601== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39601== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39601== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39601== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39601== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39601== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39601== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39601== by 0x10D735: main (TestStepSizeException.cpp:19) +==39601== +==39601== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39601== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==39601== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39601== by 0x4935822: ??? +==39601== by 0x493596F: ??? +==39601== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39601== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39601== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39601== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39601== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39601== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39601== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==39601== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39601== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39601== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39601== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39601== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39601== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39601== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39601== by 0x10D735: main (TestStepSizeException.cpp:19) +==39601== +==39601== Open file descriptor 113: +==39601== +==39601== +==39601== Open file descriptor 110: +==39601== +==39601== +==39601== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStepSizeException_valgrind.txt +==39601== +==39601== +==39601== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39601== +==39601== +==39601== +==39601== HEAP SUMMARY: +==39601== in use at exit: 617,838 bytes in 8,238 blocks +==39601== total heap usage: 44,915 allocs, 36,677 frees, 1,338,159,900 bytes allocated +==39601== +==39601== LEAK SUMMARY: +==39601== definitely lost: 0 bytes in 0 blocks +==39601== indirectly lost: 0 bytes in 0 blocks +==39601== possibly lost: 0 bytes in 0 blocks +==39601== still reachable: 24 bytes in 2 blocks +==39601== suppressed: 617,814 bytes in 8,236 blocks +==39601== Reachable blocks (those to which a pointer was found) are not shown. +==39601== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39601== +==39601== For lists of detected and suppressed errors, rerun with: -s +==39601== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestStimulusBoundaryCondition_valgrind.txt b/log-files/2024-09-20_21-41-09/TestStimulusBoundaryCondition_valgrind.txt new file mode 100644 index 000000000..cddea67d2 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestStimulusBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==43745== Memcheck, a memory error detector +==43745== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43745== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43745== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulusBoundaryCondition -malloc_debug -malloc_dump -memory_info +==43745== Parent PID: 24036 +==43745== +==43745== +==43745== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43745== Open file descriptor 12: +==43745== at 0xA56407D: pipe (pipe.c:29) +==43745== by 0x1432407D: ??? +==43745== by 0xFADE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43745== by 0xBC5F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43745== by 0xBBF8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43745== by 0xA8EFD38: PetscInitialize (pinit.c:924) +==43745== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43745== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43745== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43745== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43745== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43745== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43745== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43745== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) +==43745== +==43745== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43745== at 0xA568A1C: __open_nocancel (open64_nocancel.c:39) +==43745== by 0xA4ECBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43745== by 0xA1CD822: ??? +==43745== by 0xA1CD96F: ??? +==43745== by 0xFB836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43745== by 0xFB83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43745== by 0xFB39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43745== by 0xFADE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43745== by 0xBC5F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43745== by 0xBBF8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43745== by 0xA8EFD38: PetscInitialize (pinit.c:924) +==43745== by 0xA1921D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43745== by 0xA192227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43745== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43745== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43745== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43745== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43745== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43745== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) +==43745== +==43745== Open file descriptor 113: +==43745== +==43745== +==43745== Open file descriptor 110: +==43745== +==43745== +==43745== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulusBoundaryCondition_valgrind.txt +==43745== +==43745== +==43745== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43745== +==43745== +==43745== +==43745== HEAP SUMMARY: +==43745== in use at exit: 618,334 bytes in 8,238 blocks +==43745== total heap usage: 48,815 allocs, 40,577 frees, 1,338,522,776 bytes allocated +==43745== +==43745== LEAK SUMMARY: +==43745== definitely lost: 0 bytes in 0 blocks +==43745== indirectly lost: 0 bytes in 0 blocks +==43745== possibly lost: 0 bytes in 0 blocks +==43745== still reachable: 24 bytes in 2 blocks +==43745== suppressed: 618,310 bytes in 8,236 blocks +==43745== Reachable blocks (those to which a pointer was found) are not shown. +==43745== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43745== +==43745== For lists of detected and suppressed errors, rerun with: -s +==43745== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestStimulusFactory_valgrind.txt b/log-files/2024-09-20_21-41-09/TestStimulusFactory_valgrind.txt new file mode 100644 index 000000000..cc8a5a456 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestStimulusFactory_valgrind.txt @@ -0,0 +1,73 @@ +==41438== Memcheck, a memory error detector +==41438== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41438== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41438== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulusFactory -malloc_debug -malloc_dump -memory_info +==41438== Parent PID: 24036 +==41438== +==41438== +==41438== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41438== Open file descriptor 12: +==41438== at 0xA7C307D: pipe (pipe.c:29) +==41438== by 0x1432407D: ??? +==41438== by 0xFB2B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41438== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41438== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41438== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==41438== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41438== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41438== by 0x122E20: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41438== by 0x11DDCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41438== by 0x120996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41438== by 0x120836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41438== by 0x120ECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41438== by 0x11C1F5: main (TestStimulusFactory.cpp:19) +==41438== +==41438== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41438== at 0xA7C7A1C: __open_nocancel (open64_nocancel.c:39) +==41438== by 0xA74BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41438== by 0xA0E5822: ??? +==41438== by 0xA0E596F: ??? +==41438== by 0xFBD06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41438== by 0xFBD0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41438== by 0xFB86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41438== by 0xFB2B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41438== by 0xBEBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41438== by 0xBE55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41438== by 0xAB4CD38: PetscInitialize (pinit.c:924) +==41438== by 0xA0AA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41438== by 0xA0AA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41438== by 0x122E20: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41438== by 0x11DDCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41438== by 0x120996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41438== by 0x120836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41438== by 0x120ECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41438== by 0x11C1F5: main (TestStimulusFactory.cpp:19) +==41438== +==41438== Open file descriptor 113: +==41438== +==41438== +==41438== Open file descriptor 110: +==41438== +==41438== +==41438== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulusFactory_valgrind.txt +==41438== +==41438== +==41438== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41438== +==41438== +==41438== +==41438== HEAP SUMMARY: +==41438== in use at exit: 618,814 bytes in 8,248 blocks +==41438== total heap usage: 180,619 allocs, 172,371 frees, 1,362,117,420 bytes allocated +==41438== +==41438== LEAK SUMMARY: +==41438== definitely lost: 0 bytes in 0 blocks +==41438== indirectly lost: 0 bytes in 0 blocks +==41438== possibly lost: 0 bytes in 0 blocks +==41438== still reachable: 24 bytes in 2 blocks +==41438== suppressed: 618,790 bytes in 8,246 blocks +==41438== Reachable blocks (those to which a pointer was found) are not shown. +==41438== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41438== +==41438== For lists of detected and suppressed errors, rerun with: -s +==41438== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 38) diff --git a/log-files/2024-09-20_21-41-09/TestStimulus_valgrind.txt b/log-files/2024-09-20_21-41-09/TestStimulus_valgrind.txt new file mode 100644 index 000000000..55a0a0878 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestStimulus_valgrind.txt @@ -0,0 +1,73 @@ +==43738== Memcheck, a memory error detector +==43738== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43738== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43738== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulus -malloc_debug -malloc_dump -memory_info +==43738== Parent PID: 24036 +==43738== +==43738== +==43738== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43738== Open file descriptor 12: +==43738== at 0x9B4C07D: pipe (pipe.c:29) +==43738== by 0x1432407D: ??? +==43738== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43738== by 0x9698418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43738== by 0x9631D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43738== by 0x8328D38: PetscInitialize (pinit.c:924) +==43738== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43738== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43738== by 0x123427: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43738== by 0x11E823: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43738== by 0x120E66: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43738== by 0x120D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43738== by 0x121375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43738== by 0x11D025: main (TestStimulus.cpp:18) +==43738== +==43738== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43738== at 0x9B50A1C: __open_nocancel (open64_nocancel.c:39) +==43738== by 0x9AD4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43738== by 0x81D3822: ??? +==43738== by 0x81D396F: ??? +==43738== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43738== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43738== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43738== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43738== by 0x9698418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43738== by 0x9631D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43738== by 0x8328D38: PetscInitialize (pinit.c:924) +==43738== by 0x81981D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43738== by 0x8198227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43738== by 0x123427: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43738== by 0x11E823: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43738== by 0x120E66: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43738== by 0x120D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43738== by 0x121375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43738== by 0x11D025: main (TestStimulus.cpp:18) +==43738== +==43738== Open file descriptor 113: +==43738== +==43738== +==43738== Open file descriptor 110: +==43738== +==43738== +==43738== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulus_valgrind.txt +==43738== +==43738== +==43738== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43738== +==43738== +==43738== +==43738== HEAP SUMMARY: +==43738== in use at exit: 618,334 bytes in 8,238 blocks +==43738== total heap usage: 48,980 allocs, 40,742 frees, 1,338,551,586 bytes allocated +==43738== +==43738== LEAK SUMMARY: +==43738== definitely lost: 0 bytes in 0 blocks +==43738== indirectly lost: 0 bytes in 0 blocks +==43738== possibly lost: 0 bytes in 0 blocks +==43738== still reachable: 24 bytes in 2 blocks +==43738== suppressed: 618,310 bytes in 8,236 blocks +==43738== Reachable blocks (those to which a pointer was found) are not shown. +==43738== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43738== +==43738== For lists of detected and suppressed errors, rerun with: -s +==43738== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestStokesFlowAssembler_valgrind.txt b/log-files/2024-09-20_21-41-09/TestStokesFlowAssembler_valgrind.txt new file mode 100644 index 000000000..a254d19ca --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestStokesFlowAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25345== Memcheck, a memory error detector +==25345== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25345== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25345== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestStokesFlowAssembler -malloc_debug -malloc_dump -memory_info +==25345== Parent PID: 24036 +==25345== +==25345== +==25345== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25345== Open file descriptor 12: +==25345== at 0x866707D: pipe (pipe.c:29) +==25345== by 0x106D807D: ??? +==25345== by 0xC4EC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25345== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25345== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25345== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25345== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25345== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25345== by 0x12CFE0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25345== by 0x128839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25345== by 0x12AC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25345== by 0x12AB53: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25345== by 0x12B167: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25345== by 0x126EB5: main (TestStokesFlowAssembler.cpp:18) +==25345== +==25345== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25345== at 0x866BA1C: __open_nocancel (open64_nocancel.c:39) +==25345== by 0x85EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25345== by 0x7EBC822: ??? +==25345== by 0x7EBC96F: ??? +==25345== by 0xC5916DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25345== by 0xC591938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25345== by 0xC547922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25345== by 0xC4EC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25345== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25345== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25345== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25345== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25345== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25345== by 0x12CFE0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25345== by 0x128839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25345== by 0x12AC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25345== by 0x12AB53: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25345== by 0x12B167: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25345== by 0x126EB5: main (TestStokesFlowAssembler.cpp:18) +==25345== +==25345== Open file descriptor 113: +==25345== +==25345== +==25345== Open file descriptor 110: +==25345== +==25345== +==25345== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStokesFlowAssembler_valgrind.txt +==25345== +==25345== +==25345== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25345== +==25345== +==25345== +==25345== HEAP SUMMARY: +==25345== in use at exit: 618,270 bytes in 8,238 blocks +==25345== total heap usage: 48,397 allocs, 40,159 frees, 1,338,713,075 bytes allocated +==25345== +==25345== LEAK SUMMARY: +==25345== definitely lost: 0 bytes in 0 blocks +==25345== indirectly lost: 0 bytes in 0 blocks +==25345== possibly lost: 0 bytes in 0 blocks +==25345== still reachable: 24 bytes in 2 blocks +==25345== suppressed: 618,246 bytes in 8,236 blocks +==25345== Reachable blocks (those to which a pointer was found) are not shown. +==25345== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25345== +==25345== For lists of detected and suppressed errors, rerun with: -s +==25345== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestStokesFlowSolver_valgrind.txt b/log-files/2024-09-20_21-41-09/TestStokesFlowSolver_valgrind.txt new file mode 100644 index 000000000..43d8d6a05 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestStokesFlowSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25355== Memcheck, a memory error detector +==25355== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25355== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25355== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestStokesFlowSolver -malloc_debug -malloc_dump -memory_info +==25355== Parent PID: 24036 +==25355== +==25355== +==25355== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25355== Open file descriptor 12: +==25355== at 0x866707D: pipe (pipe.c:29) +==25355== by 0x106D807D: ??? +==25355== by 0xC4EC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25355== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25355== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25355== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25355== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25355== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25355== by 0x158044: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25355== by 0x1529D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25355== by 0x155C4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25355== by 0x155B49: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25355== by 0x15615D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25355== by 0x1511D5: main (TestStokesFlowSolver.cpp:18) +==25355== +==25355== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25355== at 0x866BA1C: __open_nocancel (open64_nocancel.c:39) +==25355== by 0x85EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25355== by 0x7EBC822: ??? +==25355== by 0x7EBC96F: ??? +==25355== by 0xC5916DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25355== by 0xC591938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25355== by 0xC547922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25355== by 0xC4EC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25355== by 0x8CCE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25355== by 0x8C67D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25355== by 0x6C2CD38: PetscInitialize (pinit.c:924) +==25355== by 0x6B031D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25355== by 0x6B03227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25355== by 0x158044: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25355== by 0x1529D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25355== by 0x155C4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25355== by 0x155B49: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25355== by 0x15615D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25355== by 0x1511D5: main (TestStokesFlowSolver.cpp:18) +==25355== +==25355== Open file descriptor 113: +==25355== +==25355== +==25355== Open file descriptor 110: +==25355== +==25355== +==25355== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStokesFlowSolver_valgrind.txt +==25355== +==25355== +==25355== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25355== +==25355== +==25355== +==25355== HEAP SUMMARY: +==25355== in use at exit: 618,199 bytes in 8,234 blocks +==25355== total heap usage: 557,705 allocs, 549,471 frees, 1,530,978,446 bytes allocated +==25355== +==25355== LEAK SUMMARY: +==25355== definitely lost: 0 bytes in 0 blocks +==25355== indirectly lost: 0 bytes in 0 blocks +==25355== possibly lost: 0 bytes in 0 blocks +==25355== still reachable: 24 bytes in 2 blocks +==25355== suppressed: 618,175 bytes in 8,232 blocks +==25355== Reachable blocks (those to which a pointer was found) are not shown. +==25355== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25355== +==25355== For lists of detected and suppressed errors, rerun with: -s +==25355== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestStreeterFibreGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestStreeterFibreGenerator_valgrind.txt new file mode 100644 index 000000000..9af51c74c --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestStreeterFibreGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==41485== Memcheck, a memory error detector +==41485== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41485== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41485== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStreeterFibreGenerator -malloc_debug -malloc_dump -memory_info +==41485== Parent PID: 24036 +==41485== +==41485== +==41485== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41485== Open file descriptor 12: +==41485== at 0xB9C307D: pipe (pipe.c:29) +==41485== by 0x1432407D: ??? +==41485== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41485== by 0xB2B1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41485== by 0xB24AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41485== by 0x9F1ED38: PetscInitialize (pinit.c:924) +==41485== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41485== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41485== by 0x11B488: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41485== by 0x11684D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41485== by 0x1192DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41485== by 0x11917C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41485== by 0x119813: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41485== by 0x114C75: main (TestStreeterFibreGenerator.cpp:19) +==41485== +==41485== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41485== at 0xB9C7A1C: __open_nocancel (open64_nocancel.c:39) +==41485== by 0xB94BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41485== by 0xB1AE822: ??? +==41485== by 0xB1AE96F: ??? +==41485== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41485== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41485== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41485== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41485== by 0xB2B1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41485== by 0xB24AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41485== by 0x9F1ED38: PetscInitialize (pinit.c:924) +==41485== by 0x9DF51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41485== by 0x9DF5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41485== by 0x11B488: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41485== by 0x11684D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41485== by 0x1192DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41485== by 0x11917C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41485== by 0x119813: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41485== by 0x114C75: main (TestStreeterFibreGenerator.cpp:19) +==41485== +==41485== Open file descriptor 113: +==41485== +==41485== +==41485== Open file descriptor 110: +==41485== +==41485== +==41485== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStreeterFibreGenerator_valgrind.txt +==41485== +==41485== +==41485== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41485== +==41485== +==41485== +==41485== HEAP SUMMARY: +==41485== in use at exit: 618,263 bytes in 8,234 blocks +==41485== total heap usage: 4,490,129 allocs, 4,481,895 frees, 1,575,790,441 bytes allocated +==41485== +==41485== LEAK SUMMARY: +==41485== definitely lost: 0 bytes in 0 blocks +==41485== indirectly lost: 0 bytes in 0 blocks +==41485== possibly lost: 0 bytes in 0 blocks +==41485== still reachable: 24 bytes in 2 blocks +==41485== suppressed: 618,239 bytes in 8,232 blocks +==41485== Reachable blocks (those to which a pointer was found) are not shown. +==41485== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41485== +==41485== For lists of detected and suppressed errors, rerun with: -s +==41485== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestSuperellipseGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestSuperellipseGenerator_valgrind.txt new file mode 100644 index 000000000..f16e35a1d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestSuperellipseGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24877== Memcheck, a memory error detector +==24877== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24877== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24877== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestSuperellipseGenerator -malloc_debug -malloc_dump -memory_info +==24877== Parent PID: 24036 +==24877== +==24877== +==24877== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24877== Open file descriptor 12: +==24877== at 0x7EAB07D: pipe (pipe.c:29) +==24877== by 0x100C307D: ??? +==24877== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24877== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24877== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24877== by 0x667ED38: PetscInitialize (pinit.c:924) +==24877== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24877== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24877== by 0x1163ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24877== by 0x111E13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24877== by 0x114280: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24877== by 0x11417B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24877== by 0x11478F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24877== by 0x110615: main (TestSuperellipseGenerator.cpp:18) +==24877== +==24877== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24877== at 0x7EAFA1C: __open_nocancel (open64_nocancel.c:39) +==24877== by 0x7E33BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24877== by 0x790E822: ??? +==24877== by 0x790E96F: ??? +==24877== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24877== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24877== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24877== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24877== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24877== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24877== by 0x667ED38: PetscInitialize (pinit.c:924) +==24877== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24877== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24877== by 0x1163ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24877== by 0x111E13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24877== by 0x114280: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24877== by 0x11417B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24877== by 0x11478F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24877== by 0x110615: main (TestSuperellipseGenerator.cpp:18) +==24877== +==24877== Open file descriptor 113: +==24877== +==24877== +==24877== Open file descriptor 110: +==24877== +==24877== +==24877== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSuperellipseGenerator_valgrind.txt +==24877== +==24877== +==24877== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24877== +==24877== +==24877== +==24877== HEAP SUMMARY: +==24877== in use at exit: 618,222 bytes in 8,238 blocks +==24877== total heap usage: 47,340 allocs, 39,102 frees, 1,362,406,823 bytes allocated +==24877== +==24877== LEAK SUMMARY: +==24877== definitely lost: 0 bytes in 0 blocks +==24877== indirectly lost: 0 bytes in 0 blocks +==24877== possibly lost: 0 bytes in 0 blocks +==24877== still reachable: 24 bytes in 2 blocks +==24877== suppressed: 618,198 bytes in 8,236 blocks +==24877== Reachable blocks (those to which a pointer was found) are not shown. +==24877== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24877== +==24877== For lists of detected and suppressed errors, rerun with: -s +==24877== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestT2SwapCellKiller_valgrind.txt b/log-files/2024-09-20_21-41-09/TestT2SwapCellKiller_valgrind.txt new file mode 100644 index 000000000..68c584003 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestT2SwapCellKiller_valgrind.txt @@ -0,0 +1,73 @@ +==26175== Memcheck, a memory error detector +==26175== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26175== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26175== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestT2SwapCellKiller -malloc_debug -malloc_dump -memory_info +==26175== Parent PID: 24036 +==26175== +==26175== +==26175== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26175== Open file descriptor 12: +==26175== at 0x10CF207D: pipe (pipe.c:29) +==26175== by 0x196AD07D: ??? +==26175== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26175== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26175== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26175== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26175== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26175== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26175== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26175== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26175== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26175== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26175== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26175== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) +==26175== +==26175== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26175== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26175== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26175== by 0xF137822: ??? +==26175== by 0xF13796F: ??? +==26175== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26175== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26175== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26175== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26175== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26175== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26175== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26175== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26175== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26175== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26175== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26175== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26175== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26175== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26175== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) +==26175== +==26175== Open file descriptor 113: +==26175== +==26175== +==26175== Open file descriptor 110: +==26175== +==26175== +==26175== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestT2SwapCellKiller_valgrind.txt +==26175== +==26175== +==26175== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26175== +==26175== +==26175== +==26175== HEAP SUMMARY: +==26175== in use at exit: 618,350 bytes in 8,239 blocks +==26175== total heap usage: 77,899 allocs, 69,660 frees, 1,343,660,535 bytes allocated +==26175== +==26175== LEAK SUMMARY: +==26175== definitely lost: 0 bytes in 0 blocks +==26175== indirectly lost: 0 bytes in 0 blocks +==26175== possibly lost: 0 bytes in 0 blocks +==26175== still reachable: 56 bytes in 3 blocks +==26175== suppressed: 618,294 bytes in 8,236 blocks +==26175== Reachable blocks (those to which a pointer was found) are not shown. +==26175== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26175== +==26175== For lists of detected and suppressed errors, rerun with: -s +==26175== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestTargetAreaLinearGrowthModifier_valgrind.txt b/log-files/2024-09-20_21-41-09/TestTargetAreaLinearGrowthModifier_valgrind.txt new file mode 100644 index 000000000..7fba47ed0 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestTargetAreaLinearGrowthModifier_valgrind.txt @@ -0,0 +1,73 @@ +==39614== Memcheck, a memory error detector +==39614== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39614== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39614== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTargetAreaLinearGrowthModifier -malloc_debug -malloc_dump -memory_info +==39614== Parent PID: 24036 +==39614== +==39614== +==39614== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39614== Open file descriptor 12: +==39614== at 0x10CF207D: pipe (pipe.c:29) +==39614== by 0x196AD07D: ??? +==39614== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39614== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39614== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39614== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39614== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39614== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39614== by 0x139DC3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39614== by 0x13253D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39614== by 0x13583C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39614== by 0x1356DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39614== by 0x135D73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39614== by 0x130965: main (TestTargetAreaLinearGrowthModifier.cpp:19) +==39614== +==39614== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39614== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==39614== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39614== by 0xF137822: ??? +==39614== by 0xF13796F: ??? +==39614== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39614== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39614== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39614== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39614== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39614== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39614== by 0xF28AD38: PetscInitialize (pinit.c:924) +==39614== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39614== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39614== by 0x139DC3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39614== by 0x13253D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39614== by 0x13583C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39614== by 0x1356DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39614== by 0x135D73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39614== by 0x130965: main (TestTargetAreaLinearGrowthModifier.cpp:19) +==39614== +==39614== Open file descriptor 113: +==39614== +==39614== +==39614== Open file descriptor 110: +==39614== +==39614== +==39614== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTargetAreaLinearGrowthModifier_valgrind.txt +==39614== +==39614== +==39614== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39614== +==39614== +==39614== +==39614== HEAP SUMMARY: +==39614== in use at exit: 618,350 bytes in 8,239 blocks +==39614== total heap usage: 584,181 allocs, 575,942 frees, 1,436,129,422 bytes allocated +==39614== +==39614== LEAK SUMMARY: +==39614== definitely lost: 0 bytes in 0 blocks +==39614== indirectly lost: 0 bytes in 0 blocks +==39614== possibly lost: 0 bytes in 0 blocks +==39614== still reachable: 56 bytes in 3 blocks +==39614== suppressed: 618,294 bytes in 8,236 blocks +==39614== Reachable blocks (those to which a pointer was found) are not shown. +==39614== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39614== +==39614== For lists of detected and suppressed errors, rerun with: -s +==39614== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestTetrahedralMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestTetrahedralMesh_valgrind.txt new file mode 100644 index 000000000..5b9c2e55b --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24507== Memcheck, a memory error detector +==24507== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24507== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24507== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==24507== Parent PID: 24036 +==24507== +==24507== +==24507== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24507== Open file descriptor 12: +==24507== at 0x823407D: pipe (pipe.c:29) +==24507== by 0x100C507D: ??? +==24507== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24507== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24507== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24507== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24507== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24507== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24507== by 0x1518AA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24507== by 0x14BB9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24507== by 0x14F310: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24507== by 0x14F1B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24507== by 0x14F847: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24507== by 0x149FC5: main (TestTetrahedralMesh.cpp:19) +==24507== +==24507== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24507== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24507== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24507== by 0x6590822: ??? +==24507== by 0x659096F: ??? +==24507== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24507== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24507== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24507== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24507== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24507== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24507== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24507== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24507== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24507== by 0x1518AA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24507== by 0x14BB9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24507== by 0x14F310: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24507== by 0x14F1B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24507== by 0x14F847: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24507== by 0x149FC5: main (TestTetrahedralMesh.cpp:19) +==24507== +==24507== Open file descriptor 113: +==24507== +==24507== +==24507== Open file descriptor 110: +==24507== +==24507== +==24507== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTetrahedralMesh_valgrind.txt +==24507== +==24507== +==24507== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24507== +==24507== +==24507== +==24507== HEAP SUMMARY: +==24507== in use at exit: 620,774 bytes in 8,239 blocks +==24507== total heap usage: 1,274,550 allocs, 1,266,311 frees, 1,408,864,681 bytes allocated +==24507== +==24507== LEAK SUMMARY: +==24507== definitely lost: 0 bytes in 0 blocks +==24507== indirectly lost: 0 bytes in 0 blocks +==24507== possibly lost: 0 bytes in 0 blocks +==24507== still reachable: 2,576 bytes in 3 blocks +==24507== suppressed: 618,198 bytes in 8,236 blocks +==24507== Reachable blocks (those to which a pointer was found) are not shown. +==24507== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24507== +==24507== For lists of detected and suppressed errors, rerun with: -s +==24507== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestTimeAdaptivityController_valgrind.txt b/log-files/2024-09-20_21-41-09/TestTimeAdaptivityController_valgrind.txt new file mode 100644 index 000000000..fa1648213 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestTimeAdaptivityController_valgrind.txt @@ -0,0 +1,73 @@ +==25265== Memcheck, a memory error detector +==25265== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25265== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25265== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestTimeAdaptivityController -malloc_debug -malloc_dump -memory_info +==25265== Parent PID: 24036 +==25265== +==25265== +==25265== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25265== Open file descriptor 12: +==25265== at 0x4CB407D: pipe (pipe.c:29) +==25265== by 0xAEA507D: ??? +==25265== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25265== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25265== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25265== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==25265== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25265== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25265== by 0x111F68: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25265== by 0x10DB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25265== by 0x10FE62: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25265== by 0x10FD5D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25265== by 0x110371: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25265== by 0x10C375: main (TestTimeAdaptivityController.cpp:18) +==25265== +==25265== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25265== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==25265== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25265== by 0x4935822: ??? +==25265== by 0x493596F: ??? +==25265== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25265== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25265== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25265== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25265== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25265== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25265== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==25265== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25265== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25265== by 0x111F68: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25265== by 0x10DB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25265== by 0x10FE62: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25265== by 0x10FD5D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25265== by 0x110371: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25265== by 0x10C375: main (TestTimeAdaptivityController.cpp:18) +==25265== +==25265== Open file descriptor 113: +==25265== +==25265== +==25265== Open file descriptor 110: +==25265== +==25265== +==25265== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimeAdaptivityController_valgrind.txt +==25265== +==25265== +==25265== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25265== +==25265== +==25265== +==25265== HEAP SUMMARY: +==25265== in use at exit: 617,838 bytes in 8,238 blocks +==25265== total heap usage: 44,909 allocs, 36,671 frees, 1,338,159,123 bytes allocated +==25265== +==25265== LEAK SUMMARY: +==25265== definitely lost: 0 bytes in 0 blocks +==25265== indirectly lost: 0 bytes in 0 blocks +==25265== possibly lost: 0 bytes in 0 blocks +==25265== still reachable: 24 bytes in 2 blocks +==25265== suppressed: 617,814 bytes in 8,236 blocks +==25265== Reachable blocks (those to which a pointer was found) are not shown. +==25265== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25265== +==25265== For lists of detected and suppressed errors, rerun with: -s +==25265== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestTimeStepper_valgrind.txt b/log-files/2024-09-20_21-41-09/TestTimeStepper_valgrind.txt new file mode 100644 index 000000000..68d5efd56 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestTimeStepper_valgrind.txt @@ -0,0 +1,73 @@ +==24260== Memcheck, a memory error detector +==24260== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24260== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24260== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestTimeStepper -malloc_debug -malloc_dump -memory_info +==24260== Parent PID: 24036 +==24260== +==24260== +==24260== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24260== Open file descriptor 12: +==24260== at 0x629207D: pipe (pipe.c:29) +==24260== by 0xAEA307D: ??? +==24260== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24260== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24260== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24260== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24260== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24260== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24260== by 0x123201: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24260== by 0x11DDE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24260== by 0x120BB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24260== by 0x120A58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24260== by 0x1210EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24260== by 0x11C205: main (TestTimeStepper.cpp:19) +==24260== +==24260== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24260== at 0x6296A1C: __open_nocancel (open64_nocancel.c:39) +==24260== by 0x621ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24260== by 0x4935822: ??? +==24260== by 0x493596F: ??? +==24260== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24260== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24260== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24260== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24260== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24260== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24260== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24260== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24260== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24260== by 0x123201: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24260== by 0x11DDE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24260== by 0x120BB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24260== by 0x120A58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24260== by 0x1210EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24260== by 0x11C205: main (TestTimeStepper.cpp:19) +==24260== +==24260== Open file descriptor 113: +==24260== +==24260== +==24260== Open file descriptor 110: +==24260== +==24260== +==24260== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimeStepper_valgrind.txt +==24260== +==24260== +==24260== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24260== +==24260== +==24260== +==24260== HEAP SUMMARY: +==24260== in use at exit: 617,838 bytes in 8,238 blocks +==24260== total heap usage: 45,119 allocs, 36,881 frees, 1,338,210,871 bytes allocated +==24260== +==24260== LEAK SUMMARY: +==24260== definitely lost: 0 bytes in 0 blocks +==24260== indirectly lost: 0 bytes in 0 blocks +==24260== possibly lost: 0 bytes in 0 blocks +==24260== still reachable: 24 bytes in 2 blocks +==24260== suppressed: 617,814 bytes in 8,236 blocks +==24260== Reachable blocks (those to which a pointer was found) are not shown. +==24260== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24260== +==24260== For lists of detected and suppressed errors, rerun with: -s +==24260== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestTimer_valgrind.txt b/log-files/2024-09-20_21-41-09/TestTimer_valgrind.txt new file mode 100644 index 000000000..b9c240edf --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestTimer_valgrind.txt @@ -0,0 +1,73 @@ +==24259== Memcheck, a memory error detector +==24259== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24259== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24259== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestTimer -malloc_debug -malloc_dump -memory_info +==24259== Parent PID: 24036 +==24259== +==24259== +==24259== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24259== Open file descriptor 12: +==24259== at 0x4D9B07D: pipe (pipe.c:29) +==24259== by 0xAEA507D: ??? +==24259== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24259== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24259== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24259== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24259== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24259== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24259== by 0x112190: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24259== by 0x10DE53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24259== by 0x11025A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24259== by 0x110155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24259== by 0x110769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24259== by 0x10C655: main (TestTimer.cpp:18) +==24259== +==24259== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24259== at 0x4D9FA1C: __open_nocancel (open64_nocancel.c:39) +==24259== by 0x4D23BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24259== by 0x4935822: ??? +==24259== by 0x493596F: ??? +==24259== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24259== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24259== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24259== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24259== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24259== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24259== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24259== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24259== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24259== by 0x112190: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24259== by 0x10DE53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24259== by 0x11025A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24259== by 0x110155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24259== by 0x110769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24259== by 0x10C655: main (TestTimer.cpp:18) +==24259== +==24259== Open file descriptor 113: +==24259== +==24259== +==24259== Open file descriptor 110: +==24259== +==24259== +==24259== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimer_valgrind.txt +==24259== +==24259== +==24259== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24259== +==24259== +==24259== +==24259== HEAP SUMMARY: +==24259== in use at exit: 617,838 bytes in 8,238 blocks +==24259== total heap usage: 44,912 allocs, 36,674 frees, 1,338,159,533 bytes allocated +==24259== +==24259== LEAK SUMMARY: +==24259== definitely lost: 0 bytes in 0 blocks +==24259== indirectly lost: 0 bytes in 0 blocks +==24259== possibly lost: 0 bytes in 0 blocks +==24259== still reachable: 24 bytes in 2 blocks +==24259== suppressed: 617,814 bytes in 8,236 blocks +==24259== Reachable blocks (those to which a pointer was found) are not shown. +==24259== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24259== +==24259== For lists of detected and suppressed errors, rerun with: -s +==24259== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestToroidal2dMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestToroidal2dMesh_valgrind.txt new file mode 100644 index 000000000..b0f628a4f --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestToroidal2dMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24571== Memcheck, a memory error detector +==24571== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24571== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24571== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidal2dMesh -malloc_debug -malloc_dump -memory_info +==24571== Parent PID: 24036 +==24571== +==24571== +==24571== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24571== Open file descriptor 12: +==24571== at 0x823407D: pipe (pipe.c:29) +==24571== by 0x100C507D: ??? +==24571== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24571== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24571== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24571== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24571== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24571== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24571== by 0x125B47: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24571== by 0x120A23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24571== by 0x123378: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24571== by 0x123274: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24571== by 0x123887: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24571== by 0x11F225: main (TestToroidal2dMesh.cpp:18) +==24571== +==24571== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24571== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24571== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24571== by 0x6590822: ??? +==24571== by 0x659096F: ??? +==24571== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24571== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24571== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24571== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24571== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24571== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24571== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24571== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24571== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24571== by 0x125B47: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24571== by 0x120A23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24571== by 0x123378: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24571== by 0x123274: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24571== by 0x123887: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24571== by 0x11F225: main (TestToroidal2dMesh.cpp:18) +==24571== +==24571== Open file descriptor 113: +==24571== +==24571== +==24571== Open file descriptor 110: +==24571== +==24571== +==24571== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidal2dMesh_valgrind.txt +==24571== +==24571== +==24571== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24571== +==24571== +==24571== +==24571== HEAP SUMMARY: +==24571== in use at exit: 618,222 bytes in 8,238 blocks +==24571== total heap usage: 164,983 allocs, 156,745 frees, 1,352,670,844 bytes allocated +==24571== +==24571== LEAK SUMMARY: +==24571== definitely lost: 0 bytes in 0 blocks +==24571== indirectly lost: 0 bytes in 0 blocks +==24571== possibly lost: 0 bytes in 0 blocks +==24571== still reachable: 24 bytes in 2 blocks +==24571== suppressed: 618,198 bytes in 8,236 blocks +==24571== Reachable blocks (those to which a pointer was found) are not shown. +==24571== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24571== +==24571== For lists of detected and suppressed errors, rerun with: -s +==24571== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestToroidal2dVertexMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestToroidal2dVertexMesh_valgrind.txt new file mode 100644 index 000000000..9a4b41066 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestToroidal2dVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24723== Memcheck, a memory error detector +==24723== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24723== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24723== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidal2dVertexMesh -malloc_debug -malloc_dump -memory_info +==24723== Parent PID: 24036 +==24723== +==24723== +==24723== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24723== Open file descriptor 12: +==24723== at 0x823407D: pipe (pipe.c:29) +==24723== by 0x100C507D: ??? +==24723== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24723== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24723== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24723== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24723== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24723== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24723== by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24723== by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24723== by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24723== by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24723== by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24723== by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19) +==24723== +==24723== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24723== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24723== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24723== by 0x6590822: ??? +==24723== by 0x659096F: ??? +==24723== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24723== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24723== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24723== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24723== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24723== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24723== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24723== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24723== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24723== by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24723== by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24723== by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24723== by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24723== by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24723== by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19) +==24723== +==24723== Open file descriptor 113: +==24723== +==24723== +==24723== Open file descriptor 110: +==24723== +==24723== +==24723== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidal2dVertexMesh_valgrind.txt +==24723== +==24723== +==24723== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24723== +==24723== +==24723== +==24723== HEAP SUMMARY: +==24723== in use at exit: 618,222 bytes in 8,238 blocks +==24723== total heap usage: 144,584 allocs, 136,346 frees, 1,346,867,306 bytes allocated +==24723== +==24723== LEAK SUMMARY: +==24723== definitely lost: 0 bytes in 0 blocks +==24723== indirectly lost: 0 bytes in 0 blocks +==24723== possibly lost: 0 bytes in 0 blocks +==24723== still reachable: 24 bytes in 2 blocks +==24723== suppressed: 618,198 bytes in 8,236 blocks +==24723== Reachable blocks (those to which a pointer was found) are not shown. +==24723== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24723== +==24723== For lists of detected and suppressed errors, rerun with: -s +==24723== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestToroidalHoneycombMeshGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestToroidalHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..d33522a64 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestToroidalHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24581== Memcheck, a memory error detector +==24581== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24581== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24581== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidalHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24581== Parent PID: 24036 +==24581== +==24581== +==24581== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24581== Open file descriptor 12: +==24581== at 0x810907D: pipe (pipe.c:29) +==24581== by 0x100C307D: ??? +==24581== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24581== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24581== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24581== by 0x667ED38: PetscInitialize (pinit.c:924) +==24581== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24581== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24581== by 0x11717D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24581== by 0x1125CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24581== by 0x114F48: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24581== by 0x114DE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24581== by 0x11547F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24581== by 0x1109F5: main (TestToroidalHoneycombMeshGenerator.cpp:19) +==24581== +==24581== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24581== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24581== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24581== by 0x790E822: ??? +==24581== by 0x790E96F: ??? +==24581== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24581== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24581== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24581== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24581== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24581== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24581== by 0x667ED38: PetscInitialize (pinit.c:924) +==24581== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24581== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24581== by 0x11717D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24581== by 0x1125CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24581== by 0x114F48: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24581== by 0x114DE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24581== by 0x11547F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24581== by 0x1109F5: main (TestToroidalHoneycombMeshGenerator.cpp:19) +==24581== +==24581== Open file descriptor 113: +==24581== +==24581== +==24581== Open file descriptor 110: +==24581== +==24581== +==24581== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidalHoneycombMeshGenerator_valgrind.txt +==24581== +==24581== +==24581== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24581== +==24581== +==24581== +==24581== HEAP SUMMARY: +==24581== in use at exit: 618,222 bytes in 8,238 blocks +==24581== total heap usage: 105,618 allocs, 97,380 frees, 1,342,904,719 bytes allocated +==24581== +==24581== LEAK SUMMARY: +==24581== definitely lost: 0 bytes in 0 blocks +==24581== indirectly lost: 0 bytes in 0 blocks +==24581== possibly lost: 0 bytes in 0 blocks +==24581== still reachable: 24 bytes in 2 blocks +==24581== suppressed: 618,198 bytes in 8,236 blocks +==24581== Reachable blocks (those to which a pointer was found) are not shown. +==24581== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24581== +==24581== For lists of detected and suppressed errors, rerun with: -s +==24581== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..39cc3811f --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24724== Memcheck, a memory error detector +==24724== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24724== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24724== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidalHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24724== Parent PID: 24036 +==24724== +==24724== +==24724== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24724== Open file descriptor 12: +==24724== at 0x810907D: pipe (pipe.c:29) +==24724== by 0x100C307D: ??? +==24724== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24724== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24724== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24724== by 0x667ED38: PetscInitialize (pinit.c:924) +==24724== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24724== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24724== by 0x11A0CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24724== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24724== by 0x116246: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24724== by 0x1160E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24724== by 0x11677D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24724== by 0x111D75: main (TestToroidalHoneycombVertexMeshGenerator.cpp:19) +==24724== +==24724== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24724== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24724== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24724== by 0x790E822: ??? +==24724== by 0x790E96F: ??? +==24724== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24724== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24724== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24724== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24724== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24724== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24724== by 0x667ED38: PetscInitialize (pinit.c:924) +==24724== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24724== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24724== by 0x11A0CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24724== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24724== by 0x116246: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24724== by 0x1160E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24724== by 0x11677D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24724== by 0x111D75: main (TestToroidalHoneycombVertexMeshGenerator.cpp:19) +==24724== +==24724== Open file descriptor 113: +==24724== +==24724== +==24724== Open file descriptor 110: +==24724== +==24724== +==24724== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt +==24724== +==24724== +==24724== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24724== +==24724== +==24724== +==24724== HEAP SUMMARY: +==24724== in use at exit: 618,222 bytes in 8,238 blocks +==24724== total heap usage: 48,582 allocs, 40,344 frees, 1,338,603,104 bytes allocated +==24724== +==24724== LEAK SUMMARY: +==24724== definitely lost: 0 bytes in 0 blocks +==24724== indirectly lost: 0 bytes in 0 blocks +==24724== possibly lost: 0 bytes in 0 blocks +==24724== still reachable: 24 bytes in 2 blocks +==24724== suppressed: 618,198 bytes in 8,236 blocks +==24724== Reachable blocks (those to which a pointer was found) are not shown. +==24724== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24724== +==24724== For lists of detected and suppressed errors, rerun with: -s +==24724== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestTransformations_valgrind.txt b/log-files/2024-09-20_21-41-09/TestTransformations_valgrind.txt new file mode 100644 index 000000000..2edb6374b --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestTransformations_valgrind.txt @@ -0,0 +1,73 @@ +==24526== Memcheck, a memory error detector +==24526== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24526== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24526== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTransformations -malloc_debug -malloc_dump -memory_info +==24526== Parent PID: 24036 +==24526== +==24526== +==24526== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24526== Open file descriptor 12: +==24526== at 0x6D3B07D: pipe (pipe.c:29) +==24526== by 0x100C507D: ??? +==24526== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24526== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24526== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24526== by 0x7017D38: PetscInitialize (pinit.c:924) +==24526== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24526== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24526== by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24526== by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24526== by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24526== by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24526== by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24526== by 0x11FEB5: main (TestTransformations.cpp:19) +==24526== +==24526== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24526== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24526== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24526== by 0x6590822: ??? +==24526== by 0x659096F: ??? +==24526== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24526== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24526== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24526== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24526== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24526== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24526== by 0x7017D38: PetscInitialize (pinit.c:924) +==24526== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24526== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24526== by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24526== by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24526== by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24526== by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24526== by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24526== by 0x11FEB5: main (TestTransformations.cpp:19) +==24526== +==24526== Open file descriptor 113: +==24526== +==24526== +==24526== Open file descriptor 110: +==24526== +==24526== +==24526== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTransformations_valgrind.txt +==24526== +==24526== +==24526== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24526== +==24526== +==24526== +==24526== HEAP SUMMARY: +==24526== in use at exit: 618,222 bytes in 8,238 blocks +==24526== total heap usage: 113,753 allocs, 105,515 frees, 1,343,577,333 bytes allocated +==24526== +==24526== LEAK SUMMARY: +==24526== definitely lost: 0 bytes in 0 blocks +==24526== indirectly lost: 0 bytes in 0 blocks +==24526== possibly lost: 0 bytes in 0 blocks +==24526== still reachable: 24 bytes in 2 blocks +==24526== suppressed: 618,198 bytes in 8,236 blocks +==24526== Reachable blocks (those to which a pointer was found) are not shown. +==24526== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24526== +==24526== For lists of detected and suppressed errors, rerun with: -s +==24526== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestTrianglesMeshReader_valgrind.txt b/log-files/2024-09-20_21-41-09/TestTrianglesMeshReader_valgrind.txt new file mode 100644 index 000000000..589b15dcd --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestTrianglesMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24611== Memcheck, a memory error detector +==24611== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24611== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24611== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTrianglesMeshReader -malloc_debug -malloc_dump -memory_info +==24611== Parent PID: 24036 +==24611== +==24611== +==24611== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24611== Open file descriptor 12: +==24611== at 0x810907D: pipe (pipe.c:29) +==24611== by 0x100C307D: ??? +==24611== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24611== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24611== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24611== by 0x667ED38: PetscInitialize (pinit.c:924) +==24611== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24611== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24611== by 0x124FBD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24611== by 0x11FF0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24611== by 0x122F54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24611== by 0x122DF4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24611== by 0x12348B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24611== by 0x11E335: main (TestTrianglesMeshReader.cpp:19) +==24611== +==24611== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24611== at 0x810DA1C: __open_nocancel (open64_nocancel.c:39) +==24611== by 0x8091BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24611== by 0x790E822: ??? +==24611== by 0x790E96F: ??? +==24611== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24611== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24611== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24611== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24611== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24611== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24611== by 0x667ED38: PetscInitialize (pinit.c:924) +==24611== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24611== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24611== by 0x124FBD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24611== by 0x11FF0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24611== by 0x122F54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24611== by 0x122DF4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24611== by 0x12348B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24611== by 0x11E335: main (TestTrianglesMeshReader.cpp:19) +==24611== +==24611== Open file descriptor 113: +==24611== +==24611== +==24611== Open file descriptor 110: +==24611== +==24611== +==24611== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTrianglesMeshReader_valgrind.txt +==24611== +==24611== +==24611== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24611== +==24611== +==24611== +==24611== HEAP SUMMARY: +==24611== in use at exit: 618,222 bytes in 8,238 blocks +==24611== total heap usage: 149,660 allocs, 141,422 frees, 1,349,785,577 bytes allocated +==24611== +==24611== LEAK SUMMARY: +==24611== definitely lost: 0 bytes in 0 blocks +==24611== indirectly lost: 0 bytes in 0 blocks +==24611== possibly lost: 0 bytes in 0 blocks +==24611== still reachable: 24 bytes in 2 blocks +==24611== suppressed: 618,198 bytes in 8,236 blocks +==24611== Reachable blocks (those to which a pointer was found) are not shown. +==24611== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24611== +==24611== For lists of detected and suppressed errors, rerun with: -s +==24611== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-09-20_21-41-09/TestTysonNovak2001OdeSystem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestTysonNovak2001OdeSystem_valgrind.txt new file mode 100644 index 000000000..08191ffab --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestTysonNovak2001OdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25851== Memcheck, a memory error detector +==25851== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25851== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25851== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info +==25851== Parent PID: 24036 +==25851== +==25851== +==25851== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25851== Open file descriptor 12: +==25851== at 0xDB5007D: pipe (pipe.c:29) +==25851== by 0x196AC07D: ??? +==25851== by 0x14C654CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25851== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25851== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25851== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25851== by 0xD7561D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25851== by 0xD756227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25851== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25851== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25851== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25851== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25851== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25851== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) +==25851== +==25851== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25851== at 0xDB54A1C: __open_nocancel (open64_nocancel.c:39) +==25851== by 0xDAD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25851== by 0xD791822: ??? +==25851== by 0xD79196F: ??? +==25851== by 0x14D0A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25851== by 0x14D0A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25851== by 0x14CC0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25851== by 0x14C652DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25851== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25851== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25851== by 0xFDE2D38: PetscInitialize (pinit.c:924) +==25851== by 0xD7561D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25851== by 0xD756227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25851== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25851== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25851== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25851== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25851== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25851== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) +==25851== +==25851== Open file descriptor 113: +==25851== +==25851== +==25851== Open file descriptor 110: +==25851== +==25851== +==25851== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt +==25851== +==25851== +==25851== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25851== +==25851== +==25851== +==25851== HEAP SUMMARY: +==25851== in use at exit: 618,318 bytes in 8,238 blocks +==25851== total heap usage: 58,420 allocs, 50,182 frees, 1,339,316,731 bytes allocated +==25851== +==25851== LEAK SUMMARY: +==25851== definitely lost: 0 bytes in 0 blocks +==25851== indirectly lost: 0 bytes in 0 blocks +==25851== possibly lost: 0 bytes in 0 blocks +==25851== still reachable: 24 bytes in 2 blocks +==25851== suppressed: 618,294 bytes in 8,236 blocks +==25851== Reachable blocks (those to which a pointer was found) are not shown. +==25851== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25851== +==25851== For lists of detected and suppressed errors, rerun with: -s +==25851== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestUblasCustomFunctions_valgrind.txt b/log-files/2024-09-20_21-41-09/TestUblasCustomFunctions_valgrind.txt new file mode 100644 index 000000000..98a6d8482 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestUblasCustomFunctions_valgrind.txt @@ -0,0 +1,73 @@ +==24388== Memcheck, a memory error detector +==24388== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24388== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24388== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestUblasCustomFunctions -malloc_debug -malloc_dump -memory_info +==24388== Parent PID: 24036 +==24388== +==24388== +==24388== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24388== Open file descriptor 12: +==24388== at 0x4E2A07D: pipe (pipe.c:29) +==24388== by 0xAF3907D: ??? +==24388== by 0x8A4D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24388== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24388== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24388== by 0x5075D38: PetscInitialize (pinit.c:924) +==24388== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24388== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24388== by 0x11B27E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24388== by 0x1164ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24388== by 0x118F42: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24388== by 0x118DE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24388== by 0x119479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24388== by 0x114915: main (TestUblasCustomFunctions.cpp:19) +==24388== +==24388== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24388== at 0x4E2EA1C: __open_nocancel (open64_nocancel.c:39) +==24388== by 0x4DB2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24388== by 0x49C4822: ??? +==24388== by 0x49C496F: ??? +==24388== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24388== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24388== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24388== by 0x8A4D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24388== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24388== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24388== by 0x5075D38: PetscInitialize (pinit.c:924) +==24388== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24388== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24388== by 0x11B27E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24388== by 0x1164ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24388== by 0x118F42: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24388== by 0x118DE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24388== by 0x119479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24388== by 0x114915: main (TestUblasCustomFunctions.cpp:19) +==24388== +==24388== Open file descriptor 113: +==24388== +==24388== +==24388== Open file descriptor 110: +==24388== +==24388== +==24388== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestUblasCustomFunctions_valgrind.txt +==24388== +==24388== +==24388== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24388== +==24388== +==24388== +==24388== HEAP SUMMARY: +==24388== in use at exit: 617,854 bytes in 8,238 blocks +==24388== total heap usage: 44,929 allocs, 36,691 frees, 1,338,161,765 bytes allocated +==24388== +==24388== LEAK SUMMARY: +==24388== definitely lost: 0 bytes in 0 blocks +==24388== indirectly lost: 0 bytes in 0 blocks +==24388== possibly lost: 0 bytes in 0 blocks +==24388== still reachable: 24 bytes in 2 blocks +==24388== suppressed: 617,830 bytes in 8,236 blocks +==24388== Reachable blocks (those to which a pointer was found) are not shown. +==24388== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24388== +==24388== For lists of detected and suppressed errors, rerun with: -s +==24388== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestUniformGridRandomFieldGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestUniformGridRandomFieldGenerator_valgrind.txt new file mode 100644 index 000000000..b1165ccd3 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestUniformGridRandomFieldGenerator_valgrind.txt @@ -0,0 +1,36 @@ +==24876== Memcheck, a memory error detector +==24876== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24876== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24876== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestUniformGridRandomFieldGenerator -malloc_debug -malloc_dump -memory_info +==24876== Parent PID: 24036 +==24876== +==24876== +==24876== FILE DESCRIPTORS: 7 open (3 std) at exit. +==24876== Open file descriptor 113: +==24876== +==24876== +==24876== Open file descriptor 110: +==24876== +==24876== +==24876== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestUniformGridRandomFieldGenerator_valgrind.txt +==24876== +==24876== +==24876== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24876== +==24876== +==24876== +==24876== HEAP SUMMARY: +==24876== in use at exit: 2,576 bytes in 3 blocks +==24876== total heap usage: 5,572 allocs, 5,569 frees, 617,066 bytes allocated +==24876== +==24876== LEAK SUMMARY: +==24876== definitely lost: 0 bytes in 0 blocks +==24876== indirectly lost: 0 bytes in 0 blocks +==24876== possibly lost: 0 bytes in 0 blocks +==24876== still reachable: 2,576 bytes in 3 blocks +==24876== suppressed: 0 bytes in 0 blocks +==24876== Reachable blocks (those to which a pointer was found) are not shown. +==24876== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24876== +==24876== For lists of detected and suppressed errors, rerun with: -s +==24876== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-20_21-41-09/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt new file mode 100644 index 000000000..ea138e0d8 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==40530== Memcheck, a memory error detector +==40530== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40530== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40530== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVanLeeuwen2009WntSwatCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==40530== Parent PID: 24036 +==40530== +==40530== +==40530== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40530== Open file descriptor 12: +==40530== at 0x127F407D: pipe (pipe.c:29) +==40530== by 0x1B36D07D: ??? +==40530== by 0x165254CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40530== by 0x120FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40530== by 0x12095D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40530== by 0x10D8CD38: PetscInitialize (pinit.c:924) +==40530== by 0x10BFE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40530== by 0x10BFE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40530== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40530== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40530== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40530== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40530== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40530== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) +==40530== +==40530== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40530== at 0x127F8A1C: __open_nocancel (open64_nocancel.c:39) +==40530== by 0x1277CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40530== by 0x10C39822: ??? +==40530== by 0x10C3996F: ??? +==40530== by 0x165CA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40530== by 0x165CA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40530== by 0x16580922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40530== by 0x165252DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40530== by 0x120FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40530== by 0x12095D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40530== by 0x10D8CD38: PetscInitialize (pinit.c:924) +==40530== by 0x10BFE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40530== by 0x10BFE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40530== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40530== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40530== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40530== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40530== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40530== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) +==40530== +==40530== Open file descriptor 113: +==40530== +==40530== +==40530== Open file descriptor 110: +==40530== +==40530== +==40530== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt +==40530== +==40530== +==40530== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40530== +==40530== +==40530== +==40530== HEAP SUMMARY: +==40530== in use at exit: 618,334 bytes in 8,238 blocks +==40530== total heap usage: 519,308 allocs, 511,070 frees, 1,547,102,338 bytes allocated +==40530== +==40530== LEAK SUMMARY: +==40530== definitely lost: 0 bytes in 0 blocks +==40530== indirectly lost: 0 bytes in 0 blocks +==40530== possibly lost: 0 bytes in 0 blocks +==40530== still reachable: 24 bytes in 2 blocks +==40530== suppressed: 618,310 bytes in 8,236 blocks +==40530== Reachable blocks (those to which a pointer was found) are not shown. +==40530== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40530== +==40530== For lists of detected and suppressed errors, rerun with: -s +==40530== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestVentilationProblem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestVentilationProblem_valgrind.txt new file mode 100644 index 000000000..c642d6d4a --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestVentilationProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41305== Memcheck, a memory error detector +==41305== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41305== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41305== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestVentilationProblem -malloc_debug -malloc_dump -memory_info +==41305== Parent PID: 24036 +==41305== +==41305== +==41305== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41305== Open file descriptor 12: +==41305== at 0x6E5907D: pipe (pipe.c:29) +==41305== by 0x107A407D: ??? +==41305== by 0xC01A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41305== by 0x83D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41305== by 0x836DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41305== by 0x7064D38: PetscInitialize (pinit.c:924) +==41305== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41305== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41305== by 0x11769E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41305== by 0x1128D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41305== by 0x115638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41305== by 0x1154D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41305== by 0x115B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41305== by 0x110B55: main (TestVentilationProblem.cpp:19) +==41305== +==41305== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41305== at 0x6E5DA1C: __open_nocancel (open64_nocancel.c:39) +==41305== by 0x6DE1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41305== by 0x66B0822: ??? +==41305== by 0x66B096F: ??? +==41305== by 0xC0BF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41305== by 0xC0BF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41305== by 0xC075922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41305== by 0xC01A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41305== by 0x83D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41305== by 0x836DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41305== by 0x7064D38: PetscInitialize (pinit.c:924) +==41305== by 0x66751D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41305== by 0x6675227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41305== by 0x11769E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41305== by 0x1128D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41305== by 0x115638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41305== by 0x1154D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41305== by 0x115B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41305== by 0x110B55: main (TestVentilationProblem.cpp:19) +==41305== +==41305== Open file descriptor 113: +==41305== +==41305== +==41305== Open file descriptor 110: +==41305== +==41305== +==41305== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVentilationProblem_valgrind.txt +==41305== +==41305== +==41305== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41305== +==41305== +==41305== +==41305== HEAP SUMMARY: +==41305== in use at exit: 618,247 bytes in 8,234 blocks +==41305== total heap usage: 5,806,640 allocs, 5,798,406 frees, 1,825,960,623 bytes allocated +==41305== +==41305== LEAK SUMMARY: +==41305== definitely lost: 0 bytes in 0 blocks +==41305== indirectly lost: 0 bytes in 0 blocks +==41305== possibly lost: 0 bytes in 0 blocks +==41305== still reachable: 24 bytes in 2 blocks +==41305== suppressed: 618,223 bytes in 8,232 blocks +==41305== Reachable blocks (those to which a pointer was found) are not shown. +==41305== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41305== +==41305== For lists of detected and suppressed errors, rerun with: -s +==41305== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-20_21-41-09/TestVertexBasedCellPopulationForCrypt_valgrind.txt b/log-files/2024-09-20_21-41-09/TestVertexBasedCellPopulationForCrypt_valgrind.txt new file mode 100644 index 000000000..9e2c28537 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestVertexBasedCellPopulationForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40593== Memcheck, a memory error detector +==40593== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40593== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40593== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info +==40593== Parent PID: 24036 +==40593== +==40593== +==40593== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40593== Open file descriptor 12: +==40593== at 0x1257007D: pipe (pipe.c:29) +==40593== by 0x1B36D07D: ??? +==40593== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40593== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40593== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40593== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40593== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40593== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40593== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40593== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40593== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40593== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40593== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40593== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) +==40593== +==40593== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40593== at 0x12574A1C: __open_nocancel (open64_nocancel.c:39) +==40593== by 0x124F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40593== by 0x11D75822: ??? +==40593== by 0x11D7596F: ??? +==40593== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40593== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40593== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40593== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40593== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40593== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40593== by 0x10AE5D38: PetscInitialize (pinit.c:924) +==40593== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40593== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40593== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40593== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40593== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40593== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40593== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40593== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) +==40593== +==40593== Open file descriptor 113: +==40593== +==40593== +==40593== Open file descriptor 110: +==40593== +==40593== +==40593== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt +==40593== +==40593== +==40593== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40593== +==40593== +==40593== +==40593== HEAP SUMMARY: +==40593== in use at exit: 618,446 bytes in 8,240 blocks +==40593== total heap usage: 53,903 allocs, 45,663 frees, 1,338,962,463 bytes allocated +==40593== +==40593== LEAK SUMMARY: +==40593== definitely lost: 0 bytes in 0 blocks +==40593== indirectly lost: 0 bytes in 0 blocks +==40593== possibly lost: 0 bytes in 0 blocks +==40593== still reachable: 136 bytes in 4 blocks +==40593== suppressed: 618,310 bytes in 8,236 blocks +==40593== Reachable blocks (those to which a pointer was found) are not shown. +==40593== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40593== +==40593== For lists of detected and suppressed errors, rerun with: -s +==40593== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestVertexBasedCellPopulation_valgrind.txt b/log-files/2024-09-20_21-41-09/TestVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..0a3c6ce33 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26182== Memcheck, a memory error detector +==26182== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26182== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26182== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26182== Parent PID: 24036 +==26182== +==26182== +==26182== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26182== Open file descriptor 12: +==26182== at 0x10CF207D: pipe (pipe.c:29) +==26182== by 0x196AD07D: ??? +==26182== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26182== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26182== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26182== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26182== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26182== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26182== by 0x3F7529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26182== by 0x3EC0B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26182== by 0x3F20D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26182== by 0x3F1F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26182== by 0x3F260B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26182== by 0x3EA4D5: main (TestVertexBasedCellPopulation.cpp:19) +==26182== +==26182== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26182== at 0x10CF6A1C: __open_nocancel (open64_nocancel.c:39) +==26182== by 0x10C7ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26182== by 0xF137822: ??? +==26182== by 0xF13796F: ??? +==26182== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26182== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26182== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26182== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26182== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26182== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26182== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26182== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26182== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26182== by 0x3F7529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26182== by 0x3EC0B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26182== by 0x3F20D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26182== by 0x3F1F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26182== by 0x3F260B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26182== by 0x3EA4D5: main (TestVertexBasedCellPopulation.cpp:19) +==26182== +==26182== Open file descriptor 113: +==26182== +==26182== +==26182== Open file descriptor 110: +==26182== +==26182== +==26182== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulation_valgrind.txt +==26182== +==26182== +==26182== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26182== +==26182== +==26182== +==26182== HEAP SUMMARY: +==26182== in use at exit: 618,350 bytes in 8,239 blocks +==26182== total heap usage: 171,090 allocs, 162,851 frees, 1,350,452,770 bytes allocated +==26182== +==26182== LEAK SUMMARY: +==26182== definitely lost: 0 bytes in 0 blocks +==26182== indirectly lost: 0 bytes in 0 blocks +==26182== possibly lost: 0 bytes in 0 blocks +==26182== still reachable: 56 bytes in 3 blocks +==26182== suppressed: 618,294 bytes in 8,236 blocks +==26182== Reachable blocks (those to which a pointer was found) are not shown. +==26182== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26182== +==26182== For lists of detected and suppressed errors, rerun with: -s +==26182== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestVertexBasedDivisionRules_valgrind.txt b/log-files/2024-09-20_21-41-09/TestVertexBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..5cf64f881 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestVertexBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==26183== Memcheck, a memory error detector +==26183== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26183== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26183== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVertexBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==26183== Parent PID: 24036 +==26183== +==26183== +==26183== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26183== Open file descriptor 12: +==26183== at 0x10DD907D: pipe (pipe.c:29) +==26183== by 0x196AD07D: ??? +==26183== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26183== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26183== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26183== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26183== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26183== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26183== by 0x147723: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26183== by 0x14201D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26183== by 0x144D0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26183== by 0x144BAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26183== by 0x145241: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26183== by 0x140445: main (TestVertexBasedDivisionRules.cpp:19) +==26183== +==26183== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26183== at 0x10DDDA1C: __open_nocancel (open64_nocancel.c:39) +==26183== by 0x10D61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26183== by 0xF137822: ??? +==26183== by 0xF13796F: ??? +==26183== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26183== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26183== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26183== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26183== by 0x105FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26183== by 0x10593D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26183== by 0xF28AD38: PetscInitialize (pinit.c:924) +==26183== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26183== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26183== by 0x147723: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26183== by 0x14201D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26183== by 0x144D0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26183== by 0x144BAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26183== by 0x145241: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26183== by 0x140445: main (TestVertexBasedDivisionRules.cpp:19) +==26183== +==26183== Open file descriptor 113: +==26183== +==26183== +==26183== Open file descriptor 110: +==26183== +==26183== +==26183== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedDivisionRules_valgrind.txt +==26183== +==26183== +==26183== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26183== +==26183== +==26183== +==26183== HEAP SUMMARY: +==26183== in use at exit: 618,350 bytes in 8,239 blocks +==26183== total heap usage: 54,153 allocs, 45,914 frees, 1,339,150,233 bytes allocated +==26183== +==26183== LEAK SUMMARY: +==26183== definitely lost: 0 bytes in 0 blocks +==26183== indirectly lost: 0 bytes in 0 blocks +==26183== possibly lost: 0 bytes in 0 blocks +==26183== still reachable: 56 bytes in 3 blocks +==26183== suppressed: 618,294 bytes in 8,236 blocks +==26183== Reachable blocks (those to which a pointer was found) are not shown. +==26183== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26183== +==26183== For lists of detected and suppressed errors, rerun with: -s +==26183== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestVertexCryptBoundaryForce_valgrind.txt b/log-files/2024-09-20_21-41-09/TestVertexCryptBoundaryForce_valgrind.txt new file mode 100644 index 000000000..90b52b95d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestVertexCryptBoundaryForce_valgrind.txt @@ -0,0 +1,73 @@ +==40487== Memcheck, a memory error detector +==40487== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40487== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40487== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info +==40487== Parent PID: 24036 +==40487== +==40487== +==40487== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40487== Open file descriptor 12: +==40487== at 0x110B907D: pipe (pipe.c:29) +==40487== by 0x1B36F07D: ??? +==40487== by 0x165724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40487== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40487== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40487== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40487== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40487== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40487== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40487== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40487== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40487== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40487== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40487== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) +==40487== +==40487== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40487== at 0x110BDA1C: __open_nocancel (open64_nocancel.c:39) +==40487== by 0x11041BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40487== by 0x109F7822: ??? +==40487== by 0x109F796F: ??? +==40487== by 0x166176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40487== by 0x16617938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40487== by 0x165CD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40487== by 0x165722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40487== by 0x12E40418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40487== by 0x12DD9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40487== by 0x11AD0D38: PetscInitialize (pinit.c:924) +==40487== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40487== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40487== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40487== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40487== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40487== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40487== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40487== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) +==40487== +==40487== Open file descriptor 113: +==40487== +==40487== +==40487== Open file descriptor 110: +==40487== +==40487== +==40487== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexCryptBoundaryForce_valgrind.txt +==40487== +==40487== +==40487== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40487== +==40487== +==40487== +==40487== HEAP SUMMARY: +==40487== in use at exit: 618,366 bytes in 8,239 blocks +==40487== total heap usage: 56,511 allocs, 48,272 frees, 1,339,180,774 bytes allocated +==40487== +==40487== LEAK SUMMARY: +==40487== definitely lost: 0 bytes in 0 blocks +==40487== indirectly lost: 0 bytes in 0 blocks +==40487== possibly lost: 0 bytes in 0 blocks +==40487== still reachable: 56 bytes in 3 blocks +==40487== suppressed: 618,310 bytes in 8,236 blocks +==40487== Reachable blocks (those to which a pointer was found) are not shown. +==40487== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40487== +==40487== For lists of detected and suppressed errors, rerun with: -s +==40487== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestVertexElement_valgrind.txt b/log-files/2024-09-20_21-41-09/TestVertexElement_valgrind.txt new file mode 100644 index 000000000..5a8d57e63 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestVertexElement_valgrind.txt @@ -0,0 +1,73 @@ +==24737== Memcheck, a memory error detector +==24737== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24737== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24737== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexElement -malloc_debug -malloc_dump -memory_info +==24737== Parent PID: 24036 +==24737== +==24737== +==24737== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24737== Open file descriptor 12: +==24737== at 0x69F607D: pipe (pipe.c:29) +==24737== by 0x100C307D: ??? +==24737== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24737== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24737== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24737== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==24737== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24737== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24737== by 0x11E098: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24737== by 0x119413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24737== by 0x11C02C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24737== by 0x11BF27: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24737== by 0x11C53B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24737== by 0x117C15: main (TestVertexElement.cpp:18) +==24737== +==24737== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24737== at 0x69FAA1C: __open_nocancel (open64_nocancel.c:39) +==24737== by 0x697EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24737== by 0x6590822: ??? +==24737== by 0x659096F: ??? +==24737== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24737== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24737== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24737== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24737== by 0x8042418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24737== by 0x7FDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24737== by 0x6CD2D38: PetscInitialize (pinit.c:924) +==24737== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24737== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24737== by 0x11E098: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24737== by 0x119413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24737== by 0x11C02C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24737== by 0x11BF27: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24737== by 0x11C53B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24737== by 0x117C15: main (TestVertexElement.cpp:18) +==24737== +==24737== Open file descriptor 113: +==24737== +==24737== +==24737== Open file descriptor 110: +==24737== +==24737== +==24737== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexElement_valgrind.txt +==24737== +==24737== +==24737== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24737== +==24737== +==24737== +==24737== HEAP SUMMARY: +==24737== in use at exit: 618,222 bytes in 8,238 blocks +==24737== total heap usage: 47,568 allocs, 39,330 frees, 1,338,396,172 bytes allocated +==24737== +==24737== LEAK SUMMARY: +==24737== definitely lost: 0 bytes in 0 blocks +==24737== indirectly lost: 0 bytes in 0 blocks +==24737== possibly lost: 0 bytes in 0 blocks +==24737== still reachable: 24 bytes in 2 blocks +==24737== suppressed: 618,198 bytes in 8,236 blocks +==24737== Reachable blocks (those to which a pointer was found) are not shown. +==24737== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24737== +==24737== For lists of detected and suppressed errors, rerun with: -s +==24737== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestVertexMeshReader_valgrind.txt b/log-files/2024-09-20_21-41-09/TestVertexMeshReader_valgrind.txt new file mode 100644 index 000000000..c2b1b5468 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestVertexMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24754== Memcheck, a memory error detector +==24754== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24754== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24754== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMeshReader -malloc_debug -malloc_dump -memory_info +==24754== Parent PID: 24036 +==24754== +==24754== +==24754== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24754== Open file descriptor 12: +==24754== at 0x690F07D: pipe (pipe.c:29) +==24754== by 0x100C307D: ??? +==24754== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24754== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24754== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24754== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24754== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24754== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24754== by 0x1205C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24754== by 0x11B52D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24754== by 0x11E602: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24754== by 0x11E4A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24754== by 0x11EB39: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24754== by 0x119955: main (TestVertexMeshReader.cpp:19) +==24754== +==24754== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24754== at 0x6913A1C: __open_nocancel (open64_nocancel.c:39) +==24754== by 0x6897BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24754== by 0x6590822: ??? +==24754== by 0x659096F: ??? +==24754== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24754== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24754== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24754== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24754== by 0x7F5B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24754== by 0x7EF4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24754== by 0x6BE9D38: PetscInitialize (pinit.c:924) +==24754== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24754== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24754== by 0x1205C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24754== by 0x11B52D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24754== by 0x11E602: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24754== by 0x11E4A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24754== by 0x11EB39: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24754== by 0x119955: main (TestVertexMeshReader.cpp:19) +==24754== +==24754== Open file descriptor 113: +==24754== +==24754== +==24754== Open file descriptor 110: +==24754== +==24754== +==24754== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMeshReader_valgrind.txt +==24754== +==24754== +==24754== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24754== +==24754== +==24754== +==24754== HEAP SUMMARY: +==24754== in use at exit: 618,222 bytes in 8,238 blocks +==24754== total heap usage: 47,845 allocs, 39,607 frees, 1,338,788,359 bytes allocated +==24754== +==24754== LEAK SUMMARY: +==24754== definitely lost: 0 bytes in 0 blocks +==24754== indirectly lost: 0 bytes in 0 blocks +==24754== possibly lost: 0 bytes in 0 blocks +==24754== still reachable: 24 bytes in 2 blocks +==24754== suppressed: 618,198 bytes in 8,236 blocks +==24754== Reachable blocks (those to which a pointer was found) are not shown. +==24754== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24754== +==24754== For lists of detected and suppressed errors, rerun with: -s +==24754== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestVertexMeshWriter_valgrind.txt b/log-files/2024-09-20_21-41-09/TestVertexMeshWriter_valgrind.txt new file mode 100644 index 000000000..d598ee900 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestVertexMeshWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24757== Memcheck, a memory error detector +==24757== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24757== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24757== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMeshWriter -malloc_debug -malloc_dump -memory_info +==24757== Parent PID: 24036 +==24757== +==24757== +==24757== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24757== Open file descriptor 12: +==24757== at 0x81F007D: pipe (pipe.c:29) +==24757== by 0x100C307D: ??? +==24757== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24757== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24757== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24757== by 0x667ED38: PetscInitialize (pinit.c:924) +==24757== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24757== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24757== by 0x12CC41: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24757== by 0x1260AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24757== by 0x128CC8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24757== by 0x128B68: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24757== by 0x1291FF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24757== by 0x1244D5: main (TestVertexMeshWriter.cpp:19) +==24757== +==24757== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24757== at 0x81F4A1C: __open_nocancel (open64_nocancel.c:39) +==24757== by 0x8178BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24757== by 0x790E822: ??? +==24757== by 0x790E96F: ??? +==24757== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24757== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24757== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24757== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24757== by 0x7A13418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24757== by 0x79ACD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24757== by 0x667ED38: PetscInitialize (pinit.c:924) +==24757== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24757== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24757== by 0x12CC41: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24757== by 0x1260AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24757== by 0x128CC8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24757== by 0x128B68: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24757== by 0x1291FF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24757== by 0x1244D5: main (TestVertexMeshWriter.cpp:19) +==24757== +==24757== Open file descriptor 113: +==24757== +==24757== +==24757== Open file descriptor 110: +==24757== +==24757== +==24757== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMeshWriter_valgrind.txt +==24757== +==24757== +==24757== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24757== +==24757== +==24757== +==24757== HEAP SUMMARY: +==24757== in use at exit: 618,222 bytes in 8,238 blocks +==24757== total heap usage: 63,652 allocs, 55,414 frees, 1,341,880,496 bytes allocated +==24757== +==24757== LEAK SUMMARY: +==24757== definitely lost: 0 bytes in 0 blocks +==24757== indirectly lost: 0 bytes in 0 blocks +==24757== possibly lost: 0 bytes in 0 blocks +==24757== still reachable: 24 bytes in 2 blocks +==24757== suppressed: 618,198 bytes in 8,236 blocks +==24757== Reachable blocks (those to which a pointer was found) are not shown. +==24757== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24757== +==24757== For lists of detected and suppressed errors, rerun with: -s +==24757== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestVertexMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestVertexMesh_valgrind.txt new file mode 100644 index 000000000..48d1a7b5d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24738== Memcheck, a memory error detector +==24738== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24738== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24738== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMesh -malloc_debug -malloc_dump -memory_info +==24738== Parent PID: 24036 +==24738== +==24738== +==24738== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24738== Open file descriptor 12: +==24738== at 0x823407D: pipe (pipe.c:29) +==24738== by 0x100C507D: ??? +==24738== by 0xBA014CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24738== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24738== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24738== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24738== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24738== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24738== by 0x14375F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24738== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24738== by 0x1413AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24738== by 0x14124C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24738== by 0x1418E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24738== by 0x13BF25: main (TestVertexMesh.cpp:19) +==24738== +==24738== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24738== at 0x8238A1C: __open_nocancel (open64_nocancel.c:39) +==24738== by 0x81BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24738== by 0x6590822: ??? +==24738== by 0x659096F: ??? +==24738== by 0xBAA66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24738== by 0xBAA6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24738== by 0xBA5C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24738== by 0xBA012DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24738== by 0x7A55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24738== by 0x79EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24738== by 0x66E5D38: PetscInitialize (pinit.c:924) +==24738== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24738== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24738== by 0x14375F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24738== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24738== by 0x1413AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24738== by 0x14124C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24738== by 0x1418E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24738== by 0x13BF25: main (TestVertexMesh.cpp:19) +==24738== +==24738== Open file descriptor 113: +==24738== +==24738== +==24738== Open file descriptor 110: +==24738== +==24738== +==24738== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMesh_valgrind.txt +==24738== +==24738== +==24738== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24738== +==24738== +==24738== +==24738== HEAP SUMMARY: +==24738== in use at exit: 620,774 bytes in 8,239 blocks +==24738== total heap usage: 96,571 allocs, 88,332 frees, 1,348,090,123 bytes allocated +==24738== +==24738== LEAK SUMMARY: +==24738== definitely lost: 0 bytes in 0 blocks +==24738== indirectly lost: 0 bytes in 0 blocks +==24738== possibly lost: 0 bytes in 0 blocks +==24738== still reachable: 2,576 bytes in 3 blocks +==24738== suppressed: 618,198 bytes in 8,236 blocks +==24738== Reachable blocks (those to which a pointer was found) are not shown. +==24738== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24738== +==24738== For lists of detected and suppressed errors, rerun with: -s +==24738== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestVisualizingWithParaviewTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestVisualizingWithParaviewTutorial_valgrind.txt new file mode 100644 index 000000000..d12d97b70 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestVisualizingWithParaviewTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40377== Memcheck, a memory error detector +==40377== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40377== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40377== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVisualizingWithParaviewTutorial -malloc_debug -malloc_dump -memory_info +==40377== Parent PID: 24036 +==40377== +==40377== +==40377== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40377== Open file descriptor 12: +==40377== at 0x10CB007D: pipe (pipe.c:29) +==40377== by 0x196AD07D: ??? +==40377== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40377== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40377== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40377== by 0xF225D38: PetscInitialize (pinit.c:924) +==40377== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40377== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40377== by 0x124111: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40377== by 0x11F773: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40377== by 0x121C86: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40377== by 0x121B81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40377== by 0x122195: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40377== by 0x11DF75: main (TestVisualizingWithParaviewTutorial.cpp:18) +==40377== +==40377== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40377== at 0x10CB4A1C: __open_nocancel (open64_nocancel.c:39) +==40377== by 0x10C38BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40377== by 0x104B5822: ??? +==40377== by 0x104B596F: ??? +==40377== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40377== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40377== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40377== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40377== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40377== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40377== by 0xF225D38: PetscInitialize (pinit.c:924) +==40377== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40377== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40377== by 0x124111: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40377== by 0x11F773: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40377== by 0x121C86: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40377== by 0x121B81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40377== by 0x122195: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40377== by 0x11DF75: main (TestVisualizingWithParaviewTutorial.cpp:18) +==40377== +==40377== Open file descriptor 113: +==40377== +==40377== +==40377== Open file descriptor 110: +==40377== +==40377== +==40377== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVisualizingWithParaviewTutorial_valgrind.txt +==40377== +==40377== +==40377== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40377== +==40377== +==40377== +==40377== HEAP SUMMARY: +==40377== in use at exit: 618,279 bytes in 8,235 blocks +==40377== total heap usage: 11,602,424 allocs, 11,594,189 frees, 2,651,992,663 bytes allocated +==40377== +==40377== LEAK SUMMARY: +==40377== definitely lost: 0 bytes in 0 blocks +==40377== indirectly lost: 0 bytes in 0 blocks +==40377== possibly lost: 0 bytes in 0 blocks +==40377== still reachable: 56 bytes in 3 blocks +==40377== suppressed: 618,223 bytes in 8,232 blocks +==40377== Reachable blocks (those to which a pointer was found) are not shown. +==40377== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40377== +==40377== For lists of detected and suppressed errors, rerun with: -s +==40377== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt b/log-files/2024-09-20_21-41-09/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt new file mode 100644 index 000000000..1945cea95 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt @@ -0,0 +1,73 @@ +==43703== Memcheck, a memory error detector +==43703== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43703== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43703== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestVoltageInterpolaterOntoMechanicsMesh -malloc_debug -malloc_dump -memory_info +==43703== Parent PID: 24036 +==43703== +==43703== +==43703== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43703== Open file descriptor 12: +==43703== at 0xB8FF07D: pipe (pipe.c:29) +==43703== by 0x1432407D: ??? +==43703== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43703== by 0xBC7A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43703== by 0xBC13D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43703== by 0x9F91D38: PetscInitialize (pinit.c:924) +==43703== by 0x9E681D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43703== by 0x9E68227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43703== by 0x11D9D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43703== by 0x119393: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43703== by 0x11B94C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43703== by 0x11B847: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43703== by 0x11BE5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43703== by 0x117B95: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) +==43703== +==43703== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43703== at 0xB903A1C: __open_nocancel (open64_nocancel.c:39) +==43703== by 0xB887BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43703== by 0xB221822: ??? +==43703== by 0xB22196F: ??? +==43703== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43703== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43703== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43703== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43703== by 0xBC7A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43703== by 0xBC13D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43703== by 0x9F91D38: PetscInitialize (pinit.c:924) +==43703== by 0x9E681D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43703== by 0x9E68227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43703== by 0x11D9D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43703== by 0x119393: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43703== by 0x11B94C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43703== by 0x11B847: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43703== by 0x11BE5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43703== by 0x117B95: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) +==43703== +==43703== Open file descriptor 113: +==43703== +==43703== +==43703== Open file descriptor 110: +==43703== +==43703== +==43703== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt +==43703== +==43703== +==43703== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43703== +==43703== +==43703== +==43703== HEAP SUMMARY: +==43703== in use at exit: 618,814 bytes in 8,248 blocks +==43703== total heap usage: 544,330 allocs, 536,082 frees, 1,522,645,468 bytes allocated +==43703== +==43703== LEAK SUMMARY: +==43703== definitely lost: 0 bytes in 0 blocks +==43703== indirectly lost: 0 bytes in 0 blocks +==43703== possibly lost: 0 bytes in 0 blocks +==43703== still reachable: 24 bytes in 2 blocks +==43703== suppressed: 618,790 bytes in 8,246 blocks +==43703== Reachable blocks (those to which a pointer was found) are not shown. +==43703== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43703== +==43703== For lists of detected and suppressed errors, rerun with: -s +==43703== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 38) diff --git a/log-files/2024-09-20_21-41-09/TestVolumeTrackingModifier_valgrind.txt b/log-files/2024-09-20_21-41-09/TestVolumeTrackingModifier_valgrind.txt new file mode 100644 index 000000000..0c80bbe04 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestVolumeTrackingModifier_valgrind.txt @@ -0,0 +1,73 @@ +==39666== Memcheck, a memory error detector +==39666== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39666== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39666== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVolumeTrackingModifier -malloc_debug -malloc_dump -memory_info +==39666== Parent PID: 24036 +==39666== +==39666== +==39666== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39666== Open file descriptor 12: +==39666== at 0xF83B07D: pipe (pipe.c:29) +==39666== by 0x196AD07D: ??? +==39666== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39666== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39666== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39666== by 0x10127D38: PetscInitialize (pinit.c:924) +==39666== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39666== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39666== by 0x20235E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39666== by 0x1FA77F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39666== by 0x1FDF12: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39666== by 0x1FDE0D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39666== by 0x1FE421: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39666== by 0x1F8F75: main (TestVolumeTrackingModifier.cpp:18) +==39666== +==39666== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39666== at 0xF83FA1C: __open_nocancel (open64_nocancel.c:39) +==39666== by 0xF7C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39666== by 0xF137822: ??? +==39666== by 0xF13796F: ??? +==39666== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39666== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39666== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39666== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39666== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39666== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39666== by 0x10127D38: PetscInitialize (pinit.c:924) +==39666== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39666== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39666== by 0x20235E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39666== by 0x1FA77F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39666== by 0x1FDF12: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39666== by 0x1FDE0D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39666== by 0x1FE421: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39666== by 0x1F8F75: main (TestVolumeTrackingModifier.cpp:18) +==39666== +==39666== Open file descriptor 113: +==39666== +==39666== +==39666== Open file descriptor 110: +==39666== +==39666== +==39666== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVolumeTrackingModifier_valgrind.txt +==39666== +==39666== +==39666== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39666== +==39666== +==39666== +==39666== HEAP SUMMARY: +==39666== in use at exit: 618,295 bytes in 8,236 blocks +==39666== total heap usage: 11,260,958 allocs, 11,252,722 frees, 3,060,133,486 bytes allocated +==39666== +==39666== LEAK SUMMARY: +==39666== definitely lost: 0 bytes in 0 blocks +==39666== indirectly lost: 0 bytes in 0 blocks +==39666== possibly lost: 0 bytes in 0 blocks +==39666== still reachable: 72 bytes in 4 blocks +==39666== suppressed: 618,223 bytes in 8,232 blocks +==39666== Reachable blocks (those to which a pointer was found) are not shown. +==39666== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39666== +==39666== For lists of detected and suppressed errors, rerun with: -s +==39666== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/TestVoronoiVertexMeshGenerator_valgrind.txt b/log-files/2024-09-20_21-41-09/TestVoronoiVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..93289a80d --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestVoronoiVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24770== Memcheck, a memory error detector +==24770== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24770== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24770== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVoronoiVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24770== Parent PID: 24036 +==24770== +==24770== +==24770== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24770== Open file descriptor 12: +==24770== at 0x6D3B07D: pipe (pipe.c:29) +==24770== by 0x100C507D: ??? +==24770== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24770== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24770== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24770== by 0x7017D38: PetscInitialize (pinit.c:924) +==24770== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24770== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24770== by 0x1216D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24770== by 0x11C6AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24770== by 0x11F25A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24770== by 0x11F0FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24770== by 0x11F791: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24770== by 0x11AAD5: main (TestVoronoiVertexMeshGenerator.cpp:19) +==24770== +==24770== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24770== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24770== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24770== by 0x6590822: ??? +==24770== by 0x659096F: ??? +==24770== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24770== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24770== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24770== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24770== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24770== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24770== by 0x7017D38: PetscInitialize (pinit.c:924) +==24770== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24770== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24770== by 0x1216D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24770== by 0x11C6AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24770== by 0x11F25A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24770== by 0x11F0FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24770== by 0x11F791: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24770== by 0x11AAD5: main (TestVoronoiVertexMeshGenerator.cpp:19) +==24770== +==24770== Open file descriptor 113: +==24770== +==24770== +==24770== Open file descriptor 110: +==24770== +==24770== +==24770== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVoronoiVertexMeshGenerator_valgrind.txt +==24770== +==24770== +==24770== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24770== +==24770== +==24770== +==24770== HEAP SUMMARY: +==24770== in use at exit: 620,703 bytes in 8,235 blocks +==24770== total heap usage: 446,961 allocs, 438,726 frees, 1,381,745,009 bytes allocated +==24770== +==24770== LEAK SUMMARY: +==24770== definitely lost: 0 bytes in 0 blocks +==24770== indirectly lost: 0 bytes in 0 blocks +==24770== possibly lost: 0 bytes in 0 blocks +==24770== still reachable: 2,576 bytes in 3 blocks +==24770== suppressed: 618,127 bytes in 8,232 blocks +==24770== Reachable blocks (those to which a pointer was found) are not shown. +==24770== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24770== +==24770== For lists of detected and suppressed errors, rerun with: -s +==24770== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-09-20_21-41-09/TestVtkMeshReader_valgrind.txt b/log-files/2024-09-20_21-41-09/TestVtkMeshReader_valgrind.txt new file mode 100644 index 000000000..9829d13b9 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestVtkMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24612== Memcheck, a memory error detector +==24612== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24612== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24612== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVtkMeshReader -malloc_debug -malloc_dump -memory_info +==24612== Parent PID: 24036 +==24612== +==24612== +==24612== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24612== Open file descriptor 12: +==24612== at 0x6D3B07D: pipe (pipe.c:29) +==24612== by 0x100C507D: ??? +==24612== by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24612== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24612== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24612== by 0x7017D38: PetscInitialize (pinit.c:924) +==24612== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24612== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24612== by 0x12E1F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24612== by 0x12936D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24612== by 0x12C13E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24612== by 0x12BFDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24612== by 0x12C675: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24612== by 0x127795: main (TestVtkMeshReader.cpp:19) +==24612== +==24612== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24612== at 0x6D3FA1C: __open_nocancel (open64_nocancel.c:39) +==24612== by 0x6CC3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24612== by 0x6590822: ??? +==24612== by 0x659096F: ??? +==24612== by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24612== by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24612== by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24612== by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24612== by 0x8387418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24612== by 0x8320D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24612== by 0x7017D38: PetscInitialize (pinit.c:924) +==24612== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24612== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24612== by 0x12E1F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24612== by 0x12936D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24612== by 0x12C13E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24612== by 0x12BFDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24612== by 0x12C675: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24612== by 0x127795: main (TestVtkMeshReader.cpp:19) +==24612== +==24612== Open file descriptor 113: +==24612== +==24612== +==24612== Open file descriptor 110: +==24612== +==24612== +==24612== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVtkMeshReader_valgrind.txt +==24612== +==24612== +==24612== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24612== +==24612== +==24612== +==24612== HEAP SUMMARY: +==24612== in use at exit: 618,222 bytes in 8,238 blocks +==24612== total heap usage: 161,766 allocs, 153,528 frees, 1,348,896,895 bytes allocated +==24612== +==24612== LEAK SUMMARY: +==24612== definitely lost: 0 bytes in 0 blocks +==24612== indirectly lost: 0 bytes in 0 blocks +==24612== possibly lost: 0 bytes in 0 blocks +==24612== still reachable: 24 bytes in 2 blocks +==24612== suppressed: 618,198 bytes in 8,236 blocks +==24612== Reachable blocks (those to which a pointer was found) are not shown. +==24612== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24612== +==24612== For lists of detected and suppressed errors, rerun with: -s +==24612== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt b/log-files/2024-09-20_21-41-09/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt new file mode 100644 index 000000000..4db7df39b --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt @@ -0,0 +1,73 @@ +==25356== Memcheck, a memory error detector +==25356== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25356== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25356== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestVtkNonlinearElasticitySolutionWriter -malloc_debug -malloc_dump -memory_info +==25356== Parent PID: 24036 +==25356== +==25356== +==25356== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25356== Open file descriptor 12: +==25356== at 0x82CA07D: pipe (pipe.c:29) +==25356== by 0x106D707D: ??? +==25356== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25356== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25356== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25356== by 0x688FD38: PetscInitialize (pinit.c:924) +==25356== by 0x67661D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25356== by 0x6766227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25356== by 0x132248: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25356== by 0x12D1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25356== by 0x1302BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25356== by 0x13015C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25356== by 0x1307F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25356== by 0x12B615: main (TestVtkNonlinearElasticitySolutionWriter.cpp:19) +==25356== +==25356== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25356== at 0x82CEA1C: __open_nocancel (open64_nocancel.c:39) +==25356== by 0x8252BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25356== by 0x7B1F822: ??? +==25356== by 0x7B1F96F: ??? +==25356== by 0xC0846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25356== by 0xC084938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25356== by 0xC03A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25356== by 0xBFDF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25356== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25356== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25356== by 0x688FD38: PetscInitialize (pinit.c:924) +==25356== by 0x67661D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25356== by 0x6766227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25356== by 0x132248: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25356== by 0x12D1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25356== by 0x1302BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25356== by 0x13015C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25356== by 0x1307F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25356== by 0x12B615: main (TestVtkNonlinearElasticitySolutionWriter.cpp:19) +==25356== +==25356== Open file descriptor 113: +==25356== +==25356== +==25356== Open file descriptor 110: +==25356== +==25356== +==25356== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt +==25356== +==25356== +==25356== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25356== +==25356== +==25356== +==25356== HEAP SUMMARY: +==25356== in use at exit: 618,270 bytes in 8,238 blocks +==25356== total heap usage: 419,050 allocs, 410,812 frees, 1,414,784,108 bytes allocated +==25356== +==25356== LEAK SUMMARY: +==25356== definitely lost: 0 bytes in 0 blocks +==25356== indirectly lost: 0 bytes in 0 blocks +==25356== possibly lost: 0 bytes in 0 blocks +==25356== still reachable: 24 bytes in 2 blocks +==25356== suppressed: 618,246 bytes in 8,236 blocks +==25356== Reachable blocks (those to which a pointer was found) are not shown. +==25356== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25356== +==25356== For lists of detected and suppressed errors, rerun with: -s +==25356== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestWarnings_valgrind.txt b/log-files/2024-09-20_21-41-09/TestWarnings_valgrind.txt new file mode 100644 index 000000000..3fc3d46a1 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestWarnings_valgrind.txt @@ -0,0 +1,73 @@ +==24279== Memcheck, a memory error detector +==24279== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24279== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24279== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestWarnings -malloc_debug -malloc_dump -memory_info +==24279== Parent PID: 24036 +==24279== +==24279== +==24279== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24279== Open file descriptor 12: +==24279== at 0x616907D: pipe (pipe.c:29) +==24279== by 0xAEA507D: ??? +==24279== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24279== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24279== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24279== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24279== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24279== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24279== by 0x114FFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24279== by 0x1106CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24279== by 0x11308E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24279== by 0x112F2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24279== by 0x1135C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24279== by 0x10EAF5: main (TestWarnings.cpp:19) +==24279== +==24279== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24279== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24279== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24279== by 0x5CB3822: ??? +==24279== by 0x5CB396F: ??? +==24279== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24279== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24279== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24279== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24279== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24279== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24279== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24279== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24279== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24279== by 0x114FFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24279== by 0x1106CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24279== by 0x11308E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24279== by 0x112F2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24279== by 0x1135C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24279== by 0x10EAF5: main (TestWarnings.cpp:19) +==24279== +==24279== Open file descriptor 113: +==24279== +==24279== +==24279== Open file descriptor 110: +==24279== +==24279== +==24279== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWarnings_valgrind.txt +==24279== +==24279== +==24279== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24279== +==24279== +==24279== +==24279== HEAP SUMMARY: +==24279== in use at exit: 617,838 bytes in 8,238 blocks +==24279== total heap usage: 45,669 allocs, 37,431 frees, 1,338,293,017 bytes allocated +==24279== +==24279== LEAK SUMMARY: +==24279== definitely lost: 0 bytes in 0 blocks +==24279== indirectly lost: 0 bytes in 0 blocks +==24279== possibly lost: 0 bytes in 0 blocks +==24279== still reachable: 24 bytes in 2 blocks +==24279== suppressed: 617,814 bytes in 8,236 blocks +==24279== Reachable blocks (those to which a pointer was found) are not shown. +==24279== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24279== +==24279== For lists of detected and suppressed errors, rerun with: -s +==24279== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-09-20_21-41-09/TestWntCellCycleOdeSystem_valgrind.txt b/log-files/2024-09-20_21-41-09/TestWntCellCycleOdeSystem_valgrind.txt new file mode 100644 index 000000000..ef845c1de --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestWntCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==40544== Memcheck, a memory error detector +==40544== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40544== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40544== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==40544== Parent PID: 24036 +==40544== +==40544== +==40544== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40544== Open file descriptor 12: +==40544== at 0x1085407D: pipe (pipe.c:29) +==40544== by 0x1B36E07D: ??? +==40544== by 0x155114CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40544== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40544== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40544== by 0xF131D38: PetscInitialize (pinit.c:924) +==40544== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40544== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40544== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40544== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40544== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40544== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40544== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40544== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) +==40544== +==40544== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40544== at 0x10858A1C: __open_nocancel (open64_nocancel.c:39) +==40544== by 0x107DCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40544== by 0xEFDE822: ??? +==40544== by 0xEFDE96F: ??? +==40544== by 0x155B66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40544== by 0x155B6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40544== by 0x1556C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40544== by 0x155112DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40544== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40544== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40544== by 0xF131D38: PetscInitialize (pinit.c:924) +==40544== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40544== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40544== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40544== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40544== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40544== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40544== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40544== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) +==40544== +==40544== Open file descriptor 113: +==40544== +==40544== +==40544== Open file descriptor 110: +==40544== +==40544== +==40544== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntCellCycleOdeSystem_valgrind.txt +==40544== +==40544== +==40544== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40544== +==40544== +==40544== +==40544== HEAP SUMMARY: +==40544== in use at exit: 618,334 bytes in 8,238 blocks +==40544== total heap usage: 185,586 allocs, 177,348 frees, 1,419,924,637 bytes allocated +==40544== +==40544== LEAK SUMMARY: +==40544== definitely lost: 0 bytes in 0 blocks +==40544== indirectly lost: 0 bytes in 0 blocks +==40544== possibly lost: 0 bytes in 0 blocks +==40544== still reachable: 24 bytes in 2 blocks +==40544== suppressed: 618,310 bytes in 8,236 blocks +==40544== Reachable blocks (those to which a pointer was found) are not shown. +==40544== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40544== +==40544== For lists of detected and suppressed errors, rerun with: -s +==40544== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestWntConcentration_valgrind.txt b/log-files/2024-09-20_21-41-09/TestWntConcentration_valgrind.txt new file mode 100644 index 000000000..a61070334 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestWntConcentration_valgrind.txt @@ -0,0 +1,73 @@ +==40467== Memcheck, a memory error detector +==40467== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40467== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40467== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntConcentration -malloc_debug -malloc_dump -memory_info +==40467== Parent PID: 24036 +==40467== +==40467== +==40467== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40467== Open file descriptor 12: +==40467== at 0x1269907D: pipe (pipe.c:29) +==40467== by 0x1B36D07D: ??? +==40467== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40467== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40467== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40467== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40467== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40467== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40467== by 0x1449B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40467== by 0x13F409: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40467== by 0x14221A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40467== by 0x1420BA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40467== by 0x142751: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40467== by 0x13D825: main (TestWntConcentration.cpp:19) +==40467== +==40467== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40467== at 0x1269DA1C: __open_nocancel (open64_nocancel.c:39) +==40467== by 0x12621BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40467== by 0x109F7822: ??? +==40467== by 0x109F796F: ??? +==40467== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40467== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40467== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40467== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40467== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40467== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40467== by 0x10B4AD38: PetscInitialize (pinit.c:924) +==40467== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40467== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40467== by 0x1449B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40467== by 0x13F409: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40467== by 0x14221A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40467== by 0x1420BA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40467== by 0x142751: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40467== by 0x13D825: main (TestWntConcentration.cpp:19) +==40467== +==40467== Open file descriptor 113: +==40467== +==40467== +==40467== Open file descriptor 110: +==40467== +==40467== +==40467== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntConcentration_valgrind.txt +==40467== +==40467== +==40467== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40467== +==40467== +==40467== +==40467== HEAP SUMMARY: +==40467== in use at exit: 618,446 bytes in 8,240 blocks +==40467== total heap usage: 56,680 allocs, 48,440 frees, 1,340,183,577 bytes allocated +==40467== +==40467== LEAK SUMMARY: +==40467== definitely lost: 0 bytes in 0 blocks +==40467== indirectly lost: 0 bytes in 0 blocks +==40467== possibly lost: 0 bytes in 0 blocks +==40467== still reachable: 136 bytes in 4 blocks +==40467== suppressed: 618,310 bytes in 8,236 blocks +==40467== Reachable blocks (those to which a pointer was found) are not shown. +==40467== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40467== +==40467== For lists of detected and suppressed errors, rerun with: -s +==40467== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-09-20_21-41-09/TestWritingPdeSolversTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestWritingPdeSolversTutorial_valgrind.txt new file mode 100644 index 000000000..777fd0c02 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestWritingPdeSolversTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==25094== Memcheck, a memory error detector +==25094== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25094== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25094== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestWritingPdeSolversTutorial -malloc_debug -malloc_dump -memory_info +==25094== Parent PID: 24036 +==25094== +==25094== +==25094== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25094== Open file descriptor 12: +==25094== at 0x855A07D: pipe (pipe.c:29) +==25094== by 0x104D507D: ??? +==25094== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25094== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25094== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25094== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==25094== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25094== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25094== by 0x14C16C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25094== by 0x147113: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25094== by 0x149DC4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25094== by 0x149CBF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25094== by 0x14A2D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25094== by 0x145915: main (TestWritingPdeSolversTutorial.cpp:18) +==25094== +==25094== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25094== at 0x855EA1C: __open_nocancel (open64_nocancel.c:39) +==25094== by 0x84E2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25094== by 0x7DAF822: ??? +==25094== by 0x7DAF96F: ??? +==25094== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25094== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25094== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25094== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25094== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25094== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25094== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==25094== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25094== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25094== by 0x14C16C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25094== by 0x147113: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25094== by 0x149DC4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25094== by 0x149CBF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25094== by 0x14A2D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25094== by 0x145915: main (TestWritingPdeSolversTutorial.cpp:18) +==25094== +==25094== Open file descriptor 113: +==25094== +==25094== +==25094== Open file descriptor 110: +==25094== +==25094== +==25094== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingPdeSolversTutorial_valgrind.txt +==25094== +==25094== +==25094== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25094== +==25094== +==25094== +==25094== HEAP SUMMARY: +==25094== in use at exit: 618,663 bytes in 8,244 blocks +==25094== total heap usage: 1,131,259 allocs, 1,123,015 frees, 1,457,327,467 bytes allocated +==25094== +==25094== LEAK SUMMARY: +==25094== definitely lost: 0 bytes in 0 blocks +==25094== indirectly lost: 0 bytes in 0 blocks +==25094== possibly lost: 0 bytes in 0 blocks +==25094== still reachable: 24 bytes in 2 blocks +==25094== suppressed: 618,639 bytes in 8,242 blocks +==25094== Reachable blocks (those to which a pointer was found) are not shown. +==25094== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25094== +==25094== For lists of detected and suppressed errors, rerun with: -s +==25094== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 31) diff --git a/log-files/2024-09-20_21-41-09/TestWritingPdeSolversTwoTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestWritingPdeSolversTwoTutorial_valgrind.txt new file mode 100644 index 000000000..33b3a871a --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestWritingPdeSolversTwoTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==25170== Memcheck, a memory error detector +==25170== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25170== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25170== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestWritingPdeSolversTwoTutorial -malloc_debug -malloc_dump -memory_info +==25170== Parent PID: 24036 +==25170== +==25170== +==25170== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25170== Open file descriptor 12: +==25170== at 0x855A07D: pipe (pipe.c:29) +==25170== by 0x104D507D: ??? +==25170== by 0xC36C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25170== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25170== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25170== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==25170== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25170== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25170== by 0x13DDFA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25170== by 0x138DF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25170== by 0x13B99A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25170== by 0x13B895: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25170== by 0x13BEA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25170== by 0x1375F5: main (TestWritingPdeSolversTwoTutorial.cpp:18) +==25170== +==25170== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25170== at 0x855EA1C: __open_nocancel (open64_nocancel.c:39) +==25170== by 0x84E2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25170== by 0x7DAF822: ??? +==25170== by 0x7DAF96F: ??? +==25170== by 0xC4116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25170== by 0xC411938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25170== by 0xC3C7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25170== by 0xC36C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25170== by 0x8B4C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25170== by 0x8AE5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25170== by 0x6B1FD38: PetscInitialize (pinit.c:924) +==25170== by 0x69F61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25170== by 0x69F6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25170== by 0x13DDFA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25170== by 0x138DF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25170== by 0x13B99A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25170== by 0x13B895: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25170== by 0x13BEA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25170== by 0x1375F5: main (TestWritingPdeSolversTwoTutorial.cpp:18) +==25170== +==25170== Open file descriptor 113: +==25170== +==25170== +==25170== Open file descriptor 110: +==25170== +==25170== +==25170== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingPdeSolversTwoTutorial_valgrind.txt +==25170== +==25170== +==25170== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25170== +==25170== +==25170== +==25170== HEAP SUMMARY: +==25170== in use at exit: 618,734 bytes in 8,248 blocks +==25170== total heap usage: 128,429 allocs, 120,181 frees, 1,367,378,607 bytes allocated +==25170== +==25170== LEAK SUMMARY: +==25170== definitely lost: 0 bytes in 0 blocks +==25170== indirectly lost: 0 bytes in 0 blocks +==25170== possibly lost: 0 bytes in 0 blocks +==25170== still reachable: 24 bytes in 2 blocks +==25170== suppressed: 618,710 bytes in 8,246 blocks +==25170== Reachable blocks (those to which a pointer was found) are not shown. +==25170== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25170== +==25170== For lists of detected and suppressed errors, rerun with: -s +==25170== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 38) diff --git a/log-files/2024-09-20_21-41-09/TestWritingTestsTutorial_valgrind.txt b/log-files/2024-09-20_21-41-09/TestWritingTestsTutorial_valgrind.txt new file mode 100644 index 000000000..a039f3563 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestWritingTestsTutorial_valgrind.txt @@ -0,0 +1,36 @@ +==24280== Memcheck, a memory error detector +==24280== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24280== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24280== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestWritingTestsTutorial -malloc_debug -malloc_dump -memory_info +==24280== Parent PID: 24036 +==24280== +==24280== +==24280== FILE DESCRIPTORS: 7 open (3 std) at exit. +==24280== Open file descriptor 113: +==24280== +==24280== +==24280== Open file descriptor 110: +==24280== +==24280== +==24280== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingTestsTutorial_valgrind.txt +==24280== +==24280== +==24280== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24280== +==24280== +==24280== +==24280== HEAP SUMMARY: +==24280== in use at exit: 24 bytes in 2 blocks +==24280== total heap usage: 3,071 allocs, 3,069 frees, 350,873 bytes allocated +==24280== +==24280== LEAK SUMMARY: +==24280== definitely lost: 0 bytes in 0 blocks +==24280== indirectly lost: 0 bytes in 0 blocks +==24280== possibly lost: 0 bytes in 0 blocks +==24280== still reachable: 24 bytes in 2 blocks +==24280== suppressed: 0 bytes in 0 blocks +==24280== Reachable blocks (those to which a pointer was found) are not shown. +==24280== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24280== +==24280== For lists of detected and suppressed errors, rerun with: -s +==24280== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-09-20_21-41-09/TestXmlMeshWriters_valgrind.txt b/log-files/2024-09-20_21-41-09/TestXmlMeshWriters_valgrind.txt new file mode 100644 index 000000000..39d94a89e --- /dev/null +++ b/log-files/2024-09-20_21-41-09/TestXmlMeshWriters_valgrind.txt @@ -0,0 +1,73 @@ +==24791== Memcheck, a memory error detector +==24791== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24791== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24791== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestXmlMeshWriters -malloc_debug -malloc_dump -memory_info +==24791== Parent PID: 24036 +==24791== +==24791== +==24791== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24791== Open file descriptor 12: +==24791== at 0x708F07D: pipe (pipe.c:29) +==24791== by 0x100C307D: ??? +==24791== by 0xBCEF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24791== by 0x86DB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24791== by 0x8674D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24791== by 0x736BD38: PetscInitialize (pinit.c:924) +==24791== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24791== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24791== by 0x141D14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24791== by 0x13CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24791== by 0x13FA20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24791== by 0x13F8C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24791== by 0x13FF57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24791== by 0x13B075: main (TestXmlMeshWriters.cpp:19) +==24791== +==24791== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24791== at 0x7093A1C: __open_nocancel (open64_nocancel.c:39) +==24791== by 0x7017BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24791== by 0x6590822: ??? +==24791== by 0x659096F: ??? +==24791== by 0xBD946DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24791== by 0xBD94938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24791== by 0xBD4A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24791== by 0xBCEF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24791== by 0x86DB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24791== by 0x8674D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24791== by 0x736BD38: PetscInitialize (pinit.c:924) +==24791== by 0x65551D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24791== by 0x6555227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24791== by 0x141D14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24791== by 0x13CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24791== by 0x13FA20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24791== by 0x13F8C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24791== by 0x13FF57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24791== by 0x13B075: main (TestXmlMeshWriters.cpp:19) +==24791== +==24791== Open file descriptor 113: +==24791== +==24791== +==24791== Open file descriptor 110: +==24791== +==24791== +==24791== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestXmlMeshWriters_valgrind.txt +==24791== +==24791== +==24791== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24791== +==24791== +==24791== +==24791== HEAP SUMMARY: +==24791== in use at exit: 618,222 bytes in 8,238 blocks +==24791== total heap usage: 453,225 allocs, 444,987 frees, 1,402,960,233 bytes allocated +==24791== +==24791== LEAK SUMMARY: +==24791== definitely lost: 0 bytes in 0 blocks +==24791== indirectly lost: 0 bytes in 0 blocks +==24791== possibly lost: 0 bytes in 0 blocks +==24791== still reachable: 24 bytes in 2 blocks +==24791== suppressed: 618,198 bytes in 8,236 blocks +==24791== Reachable blocks (those to which a pointer was found) are not shown. +==24791== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24791== +==24791== For lists of detected and suppressed errors, rerun with: -s +==24791== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 67 from 35) diff --git a/log-files/2024-09-20_21-41-09/Test_valgrind.txt b/log-files/2024-09-20_21-41-09/Test_valgrind.txt new file mode 100644 index 000000000..c4fcead7b --- /dev/null +++ b/log-files/2024-09-20_21-41-09/Test_valgrind.txt @@ -0,0 +1,73 @@ +==42862== Memcheck, a memory error detector +==42862== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42862== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42862== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCodegen -malloc_debug -malloc_dump -memory_info +==42862== Parent PID: 24036 +==42862== +==42862== +==42862== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42862== Open file descriptor 12: +==42862== at 0x9E0107D: pipe (pipe.c:29) +==42862== by 0x1432407D: ??? +==42862== by 0xEE1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42862== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42862== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42862== by 0x85DDD38: PetscInitialize (pinit.c:924) +==42862== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42862== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42862== by 0x135779: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42862== by 0x12FB0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42862== by 0x132D44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42862== by 0x132BE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42862== by 0x13327B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42862== by 0x12ADA5: main (Test.cpp:19) +==42862== +==42862== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42862== at 0x9E05A1C: __open_nocancel (open64_nocancel.c:39) +==42862== by 0x9D89BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42862== by 0x848A822: ??? +==42862== by 0x848A96F: ??? +==42862== by 0xEEC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42862== by 0xEEC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42862== by 0xEE7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42862== by 0xEE1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42862== by 0x994D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42862== by 0x98E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42862== by 0x85DDD38: PetscInitialize (pinit.c:924) +==42862== by 0x844F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42862== by 0x844F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42862== by 0x135779: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42862== by 0x12FB0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42862== by 0x132D44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42862== by 0x132BE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42862== by 0x13327B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42862== by 0x12ADA5: main (Test.cpp:19) +==42862== +==42862== Open file descriptor 113: +==42862== +==42862== +==42862== Open file descriptor 110: +==42862== +==42862== +==42862== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test_valgrind.txt +==42862== +==42862== +==42862== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42862== +==42862== +==42862== +==42862== HEAP SUMMARY: +==42862== in use at exit: 623,606 bytes in 8,246 blocks +==42862== total heap usage: 941,057 allocs, 932,811 frees, 2,144,096,816 bytes allocated +==42862== +==42862== LEAK SUMMARY: +==42862== definitely lost: 0 bytes in 0 blocks +==42862== indirectly lost: 0 bytes in 0 blocks +==42862== possibly lost: 0 bytes in 0 blocks +==42862== still reachable: 5,367 bytes in 14 blocks +==42862== suppressed: 618,239 bytes in 8,232 blocks +==42862== Reachable blocks (those to which a pointer was found) are not shown. +==42862== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42862== +==42862== For lists of detected and suppressed errors, rerun with: -s +==42862== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-09-20_21-41-09/index.html b/log-files/2024-09-20_21-41-09/index.html new file mode 100644 index 000000000..f27f32399 --- /dev/null +++ b/log-files/2024-09-20_21-41-09/index.html @@ -0,0 +1,425 @@ + + + + + + Chaste valgrind memtest output + + +

Memtest output for commit caf6ea47752a7c35ab35a7ad53e8a46352d07dba on branch 273-pychaste-merge

+
+

Summary of 398 tests:

+

green: 398

+

orange: 0

+

red: 0

+
+

Test1D3DLinearEllipticSolver: No leaks found (test output)

+

Test1dMonodomainShannonCvodeBenchmarks: No leaks found (test output)

+

Test2dVertexBasedSimulationWithSrnModels: No leaks found (test output)

+

Test: No leaks found (test output)

+

TestAbstractAnalyticJacobian: No leaks found (test output)

+

TestAbstractContinuumMechanicsAssembler: No leaks found (test output)

+

TestAbstractContractionCellFactory: No leaks found (test output)

+

TestAbstractCvodeSystem: No leaks found (test output)

+

TestAbstractFeCableIntegralAssembler: No leaks found (test output)

+

TestAbstractFeSurfaceIntegralAssembler: No leaks found (test output)

+

TestAbstractFeVolumeIntegralAssembler: No leaks found (test output)

+

TestAbstractFunctionalCalculator: No leaks found (test output)

+

TestAbstractIvpOdeSolver: No leaks found (test output)

+

TestAbstractOdeSystem: No leaks found (test output)

+

TestAbstractPurkinjeCellFactory: No leaks found (test output)

+

TestAcinarUnitModels: No leaks found (test output)

+

TestAirwayBranch: No leaks found (test output)

+

TestAirwayGeneration: No leaks found (test output)

+

TestAirwayGenerator: No leaks found (test output)

+

TestAirwayPropertiesCalculator: No leaks found (test output)

+

TestAirwayRemesher: No leaks found (test output)

+

TestAirwayTreeWalker: No leaks found (test output)

+

TestAirwayWallModels: No leaks found (test output)

+

TestAlarcon2004OxygenBasedCellCycleOdeSystem: No leaks found (test output)

+

TestArchiveCell: No leaks found (test output)

+

TestArchiveFormat: No leaks found (test output)

+

TestArchiving: No leaks found (test output)

+

TestArchivingExtendedBidomain: No leaks found (test output)

+

TestArchivingHelperClasses: No leaks found (test output)

+

TestBackwardEulerIvpOdeSolver: No leaks found (test output)

+

TestBenchmarkPreconditionersForMeshIndependence: No leaks found (test output)

+

TestBidomainDistributedMesh: No leaks found (test output)

+

TestBidomainProblem: No leaks found (test output)

+

TestBidomainTissue: No leaks found (test output)

+

TestBidomainWithBathProblem: No leaks found (test output)

+

TestBidomainWithSvi: No leaks found (test output)

+

TestBoundaryConditionsContainer: No leaks found (test output)

+

TestBuskeForces: No leaks found (test output)

+

TestCaBasedCellPopulation: No leaks found (test output)

+

TestCaBasedDivisionRules: No leaks found (test output)

+

TestCaUpdateRules: No leaks found (test output)

+

TestCableTestProblem: No leaks found (test output)

+

TestCardiacElectroMechanicsFurtherFunctionality: No leaks found (test output)

+

TestCardiacElectroMechanicsProblem: No leaks found (test output)

+

TestCardiacSimulation: No leaks found (test output)

+

TestCardiacSimulationArchiver: No leaks found (test output)

+

TestCell: No leaks found (test output)

+

TestCellBasedCellProperties: No leaks found (test output)

+

TestCellBasedEllipticPdeSolver: No leaks found (test output)

+

TestCellBasedEllipticPdes: No leaks found (test output)

+

TestCellBasedEventHandler: No leaks found (test output)

+

TestCellBasedParabolicPdes: No leaks found (test output)

+

TestCellBetaCateninWriter: No leaks found (test output)

+

TestCellCycleModelOdeSolver: No leaks found (test output)

+

TestCellDataMaps: No leaks found (test output)

+

TestCellForCrypt: No leaks found (test output)

+

TestCellKillers: No leaks found (test output)

+

TestCellMutationStates: No leaks found (test output)

+

TestCellPopulationBoundaryConditions: No leaks found (test output)

+

TestCellPopulationCountWriters: No leaks found (test output)

+

TestCellPopulationEventWriters: No leaks found (test output)

+

TestCellPopulationWriters: No leaks found (test output)

+

TestCellProliferativeTypes: No leaks found (test output)

+

TestCellProperties: No leaks found (test output)

+

TestCellPropertyCollection: No leaks found (test output)

+

TestCellPropertyRegistry: No leaks found (test output)

+

TestCellSrn: No leaks found (test output)

+

TestCellWriters: No leaks found (test output)

+

TestCellsGenerator: No leaks found (test output)

+

TestCellwiseDataGradient: No leaks found (test output)

+

TestCentreBasedDivisionRules: No leaks found (test output)

+

TestChasteBuildInfo: No leaks found (test output)

+

TestChastePoint: No leaks found (test output)

+

TestChasteRegions: No leaks found (test output)

+

TestChebyshevIteration: No leaks found (test output)

+

TestCheckpointing: No leaks found (test output)

+

TestCitations: No leaks found (test output)

+

TestCodegenPresent: No leaks found (test output)

+

TestColumnDataReaderWriter: No leaks found (test output)

+

TestCombinedOdeSystem: No leaks found (test output)

+

TestCommandLineArguments: No leaks found (test output)

+

TestCommandLineArgumentsTutorial: No leaks found (test output)

+

TestCompressibleNonlinearElasticitySolver: No leaks found (test output)

+

TestConductivityTensors: No leaks found (test output)

+

TestConstBoundaryCondition: No leaks found (test output)

+

TestContinuumMechanicsNeumannBcsAssembler: No leaks found (test output)

+

TestContractionModels: No leaks found (test output)

+

TestConvergenceTester: No leaks found (test output)

+

TestCoupledCableTestProblem: No leaks found (test output)

+

TestCreatingAndUsingANewCellBasedSimulationModifierTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellCycleModelTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellKillerTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellMutationStateTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellPropertyTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewForceTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewSrnModelTutorial: No leaks found (test output)

+

TestCreatingAndUsingNewCellBasedWritersTutorial: No leaks found (test output)

+

TestCryptCellsGenerator: No leaks found (test output)

+

TestCryptDivisionRules: No leaks found (test output)

+

TestCryptProjectionForce: No leaks found (test output)

+

TestCryptProjectionStatistics: No leaks found (test output)

+

TestCryptSimulation1d: No leaks found (test output)

+

TestCryptSimulation2dWithMeshBasedCellPopulation: No leaks found (test output)

+

TestCryptSimulation2dWithVertexBasedCellPopulation: No leaks found (test output)

+

TestCryptSimulationBoundaryCondition: No leaks found (test output)

+

TestCryptStatistics: No leaks found (test output)

+

TestCvodeAdaptor: No leaks found (test output)

+

TestCvodeCells: No leaks found (test output)

+

TestCvodeCellsWithDataClamp: No leaks found (test output)

+

TestCvodeWithJacobian: No leaks found (test output)

+

TestCwd: No leaks found (test output)

+

TestCylindrical2dMesh: No leaks found (test output)

+

TestCylindrical2dNodesOnlyMesh: No leaks found (test output)

+

TestCylindrical2dVertexMesh: No leaks found (test output)

+

TestCylindricalHoneycombMeshGenerator: No leaks found (test output)

+

TestCylindricalHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestDebug: No leaks found (test output)

+

TestDeltaNotchModifier: No leaks found (test output)

+

TestDeltaNotchOdeSystem: No leaks found (test output)

+

TestDiscreteSystemForceCalculator: No leaks found (test output)

+

TestDistanceMapCalculator: No leaks found (test output)

+

TestDistributedBoxCollection: No leaks found (test output)

+

TestDistributedQuadraticMesh: No leaks found (test output)

+

TestDistributedTetrahedralMesh: No leaks found (test output)

+

TestDistributedVector: No leaks found (test output)

+

TestDivisionBiasTrackingModifier: No leaks found (test output)

+

TestDynamicVentilation: No leaks found (test output)

+

TestDynamicallyLoadedCellModels: No leaks found (test output)

+

TestEdge: No leaks found (test output)

+

TestEdgeInteriorSrn: No leaks found (test output)

+

TestElectroMechanicsExactSolution: No leaks found (test output)

+

TestElectroMechanicsProblemDefinition: No leaks found (test output)

+

TestElectrodes: No leaks found (test output)

+

TestElement: No leaks found (test output)

+

TestElementAttributes: No leaks found (test output)

+

TestEllipticBoxDomainPdeModifier: No leaks found (test output)

+

TestEllipticGrowingDomainPdeModifier: No leaks found (test output)

+

TestException: No leaks found (test output)

+

TestExecutableSupport: No leaks found (test output)

+

TestExplicitCardiacMechanicsSolver: No leaks found (test output)

+

TestExtendedBidomainProblem: No leaks found (test output)

+

TestExtendedBidomainTissue: No leaks found (test output)

+

TestExtendedVsBidomainProblem: No leaks found (test output)

+

TestExtrinsicPullModifier: No leaks found (test output)

+

TestFemlabMeshReader: No leaks found (test output)

+

TestFibreReader: No leaks found (test output)

+

TestFibreReaderAbilityExtendedBidomainProblem: No leaks found (test output)

+

TestFibreWriter: No leaks found (test output)

+

TestFileComparison: No leaks found (test output)

+

TestFileFinder: No leaks found (test output)

+

TestFineCoarseMeshPair: No leaks found (test output)

+

TestFloatingPointDivisionByZero: No leaks found (test output)

+

TestFloatingPointDivisionByZeroPetsc: No leaks found (test output)

+

TestFluidSource: No leaks found (test output)

+

TestForces: No leaks found (test output)

+

TestFourthOrderTensor: No leaks found (test output)

+

TestGIModifiedModels: No leaks found (test output)

+

TestGRL1IvpOdeSolver: No leaks found (test output)

+

TestGRL2IvpOdeSolver: No leaks found (test output)

+

TestGaussianQuadratureRule: No leaks found (test output)

+

TestGeneralizedRushLarsen: No leaks found (test output)

+

TestGenericEventHandler: No leaks found (test output)

+

TestGmshMeshReader: No leaks found (test output)

+

TestGoldbeter1991OdeSystem: No leaks found (test output)

+

TestHdf5Converters: No leaks found (test output)

+

TestHdf5DataReader: No leaks found (test output)

+

TestHdf5DataWriter: No leaks found (test output)

+

TestHdf5ToVisualizerConverters: No leaks found (test output)

+

TestHeartConfig: No leaks found (test output)

+

TestHeartEventHandler: No leaks found (test output)

+

TestHeartFileFinder: No leaks found (test output)

+

TestHeartGeometryInformation: No leaks found (test output)

+

TestHeartRegionCodes: No leaks found (test output)

+

TestHelloWorld: No leaks found (test output)

+

TestHeterogeneousConductivities: No leaks found (test output)

+

TestHeun2IvpOdeSolver: No leaks found (test output)

+

TestHodgkinHuxleySquidAxon1952OriginalOdeSystem: No leaks found (test output)

+

TestHoneycombMeshGenerator: No leaks found (test output)

+

TestHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestImmersedBoundary2dArrays: No leaks found (test output)

+

TestImmersedBoundaryCellPopulation: No leaks found (test output)

+

TestImmersedBoundaryDivisionRules: No leaks found (test output)

+

TestImmersedBoundaryElement: No leaks found (test output)

+

TestImmersedBoundaryFftInterface: No leaks found (test output)

+

TestImmersedBoundaryForces: No leaks found (test output)

+

TestImmersedBoundaryHoneycombMeshGenerator: No leaks found (test output)

+

TestImmersedBoundaryMesh: No leaks found (test output)

+

TestImmersedBoundaryMeshReader: No leaks found (test output)

+

TestImmersedBoundaryMeshWriter: No leaks found (test output)

+

TestImmersedBoundaryPalisadeMeshGenerator: No leaks found (test output)

+

TestImmersedBoundarySimulationModifier: No leaks found (test output)

+

TestImmersedBoundarySvgWriter: No leaks found (test output)

+

TestImpedancePostProcessor: No leaks found (test output)

+

TestImplicitCardiacMechanicsSolver: No leaks found (test output)

+

TestIncompressibleNonlinearElasticitySolver: No leaks found (test output)

+

TestIonicModels: No leaks found (test output)

+

TestIonicModelsWithSacs: No leaks found (test output)

+

TestLinearBasisFunction: No leaks found (test output)

+

TestLinearParabolicPdeSystemForCoupledOdeSystem: No leaks found (test output)

+

TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver: No leaks found (test output)

+

TestLinearSpringWithVariableSpringConstantsForce: No leaks found (test output)

+

TestLinearSystem: No leaks found (test output)

+

TestLobePropertiesCalculator: No leaks found (test output)

+

TestLogFile: No leaks found (test output)

+

TestMajorAirwaysCentreLinesCleaner: No leaks found (test output)

+

TestMaterialLaws: No leaks found (test output)

+

TestMathsCustomFunctions: No leaks found (test output)

+

TestMatrixVentilationProblem: No leaks found (test output)

+

TestMemfemMeshReader: No leaks found (test output)

+

TestMeshBasedCellPopulation: No leaks found (test output)

+

TestMeshBasedCellPopulationWithGhostNodes: No leaks found (test output)

+

TestMeshUtilityFunctions: No leaks found (test output)

+

TestMeshWriters: No leaks found (test output)

+

TestMirams2010WntOdeSystem: No leaks found (test output)

+

TestMixedDimensionMesh: No leaks found (test output)

+

TestMockEulerIvpOdeSolver: No leaks found (test output)

+

TestModernCppFeatures: No leaks found (test output)

+

TestModifiers: No leaks found (test output)

+

TestMonodomainConductionVelocity: No leaks found (test output)

+

TestMonodomainFitzHughNagumo: No leaks found (test output)

+

TestMonodomainMassLumping: No leaks found (test output)

+

TestMonodomainProblem: No leaks found (test output)

+

TestMonodomainPurkinjeAssemblersAndSolver: No leaks found (test output)

+

TestMonodomainPurkinjeProblem: No leaks found (test output)

+

TestMonodomainStiffnessMatrixAssembler: No leaks found (test output)

+

TestMonodomainTissue: No leaks found (test output)

+

TestMonodomainWithSvi: No leaks found (test output)

+

TestMonodomainWithTimeAdaptivity: No leaks found (test output)

+

TestMoreMechanics: No leaks found (test output)

+

TestMultiLobeAirwayGenerator: No leaks found (test output)

+

TestMutableMesh: No leaks found (test output)

+

TestMutableMeshRemesh: No leaks found (test output)

+

TestMutableVertexMesh: No leaks found (test output)

+

TestMutableVertexMeshOperationsWithPopulationSrn: No leaks found (test output)

+

TestMutableVertexMeshReMesh: No leaks found (test output)

+

TestMutableVertexMeshRosetteMethods: No leaks found (test output)

+

TestNeumannStimulus: No leaks found (test output)

+

TestNhsModelWithBackwardSolver: No leaks found (test output)

+

TestNode: No leaks found (test output)

+

TestNodeAttributes: No leaks found (test output)

+

TestNodeBasedCellPopulation: No leaks found (test output)

+

TestNodeBasedCellPopulationParallelMethods: No leaks found (test output)

+

TestNodeBasedCellPopulationWithBuskeUpdate: No leaks found (test output)

+

TestNodeBasedCellPopulationWithParticles: No leaks found (test output)

+

TestNodesOnlyMesh: No leaks found (test output)

+

TestNonCachedTetrahedralMesh: No leaks found (test output)

+

TestNonlinearElasticityTools: No leaks found (test output)

+

TestNonlinearSolvers: No leaks found (test output)

+

TestNormallyDistributedTargetAreaModifier: No leaks found (test output)

+

TestNumericFileComparison: No leaks found (test output)

+

TestNumericalMethods: No leaks found (test output)

+

TestObjectCommunicator: No leaks found (test output)

+

TestObsoleteBoxCollection: No leaks found (test output)

+

TestOdeBasedCellCycleModels: No leaks found (test output)

+

TestOdeBasedCellCycleModelsForCrypt: No leaks found (test output)

+

TestOdeBasedSrnModels: No leaks found (test output)

+

TestOdeLinearSystemSolver: No leaks found (test output)

+

TestOffLatticeCryptProjectionSimulation: No leaks found (test output)

+

TestOffLatticeRandomFieldGenerator: No leaks found (test output)

+

TestOffLatticeSimulation3d: No leaks found (test output)

+

TestOffLatticeSimulation: No leaks found (test output)

+

TestOffLatticeSimulationWithBuskeForces: No leaks found (test output)

+

TestOffLatticeSimulationWithNodeBasedCellPopulation: No leaks found (test output)

+

TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d: No leaks found (test output)

+

TestOffLatticeSimulationWithPdes: No leaks found (test output)

+

TestOffLatticeSimulationWithVertexBasedCellPopulation: No leaks found (test output)

+

TestOnLatticeSimulationWithCaBasedCellPopulation: No leaks found (test output)

+

TestOnLatticeSimulationWithPdes: No leaks found (test output)

+

TestOnLatticeSimulationWithPottsBasedCellPopulation: No leaks found (test output)

+

TestOperatorSplittingMonodomainSolver: No leaks found (test output)

+

TestOutputDirectoryFifoQueue: No leaks found (test output)

+

TestOutputFileHandler: No leaks found (test output)

+

TestPCBlockDiagonal: No leaks found (test output)

+

TestPCLDUFactorisation: No leaks found (test output)

+

TestPCTwoLevelsBlockDiagonal: No leaks found (test output)

+

TestPapillaryFibreCalculator: No leaks found (test output)

+

TestParabolicBoxDomainPdeModifier: No leaks found (test output)

+

TestParabolicGrowingDomainPdeModifier: No leaks found (test output)

+

TestParallelCellsGenerator: No leaks found (test output)

+

TestParallelColumnDataReaderWriter: No leaks found (test output)

+

TestParallelWriterPerformance: No leaks found (test output)

+

TestPdeSimulationTime: No leaks found (test output)

+

TestPdeTestClasses: No leaks found (test output)

+

TestPerElementWriter: No leaks found (test output)

+

TestPeriodicNodeBasedCellPopulationParallelMethods: No leaks found (test output)

+

TestPeriodicNodesOnlyMesh: No leaks found (test output)

+

TestPetscEvents: No leaks found (test output)

+

TestPetscMatTools: No leaks found (test output)

+

TestPetscSetup: No leaks found (test output)

+

TestPetscTools2: No leaks found (test output)

+

TestPetscTools: No leaks found (test output)

+

TestPetscVecTools: No leaks found (test output)

+

TestPlaneStimulusCellFactory: No leaks found (test output)

+

TestPostProcessingWriter: No leaks found (test output)

+

TestPottsBasedCellPopulation: No leaks found (test output)

+

TestPottsBasedCryptSimulation: No leaks found (test output)

+

TestPottsElement: No leaks found (test output)

+

TestPottsMesh: No leaks found (test output)

+

TestPottsMeshGenerator: No leaks found (test output)

+

TestPottsMeshReader: No leaks found (test output)

+

TestPottsMeshWriter: No leaks found (test output)

+

TestPottsUpdateRules: No leaks found (test output)

+

TestProblemDefinitions: No leaks found (test output)

+

TestProgressReporter: No leaks found (test output)

+

TestPropagationPropertiesCalculator: No leaks found (test output)

+

TestPseudoEcgCalculator: No leaks found (test output)

+

TestQuadraticBasisFunction: No leaks found (test output)

+

TestQuadraticMesh: No leaks found (test output)

+

TestQuadraturePointsGroup: No leaks found (test output)

+

TestRKC21IvpOdeSolver: No leaks found (test output)

+

TestRandomNumberGenerator: No leaks found (test output)

+

TestReplicatableVector: No leaks found (test output)

+

TestRepresentativeImmersedBoundarySimulations: No leaks found (test output)

+

TestRestitutionStimuli: No leaks found (test output)

+

TestRungeKuttaFehlbergIvpOdeSolver: No leaks found (test output)

+

TestRunningContactInhibitionSimulationsTutorial: No leaks found (test output)

+

TestRunningCryptSimulationsWithMutationsTutorial: No leaks found (test output)

+

TestRunningDeltaNotchSimulationsTutorial: No leaks found (test output)

+

TestRunningDifferentialAdhesionSimulationsTutorial: No leaks found (test output)

+

TestRunningImmersedBoundarySimulationsTutorial: No leaks found (test output)

+

TestRunningMeshBasedCryptSimulationsTutorial: No leaks found (test output)

+

TestRunningMeshBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningNodeBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningPottsBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningTumourSpheroidSimulationsTutorial: No leaks found (test output)

+

TestRunningVertexBasedCryptSimulationsTutorial: No leaks found (test output)

+

TestRunningVertexBasedSimulationsTutorial: No leaks found (test output)

+

TestRushLarsen: No leaks found (test output)

+

TestShovingCaBasedDivisionRules: No leaks found (test output)

+

TestSimpleCellCycleModels: No leaks found (test output)

+

TestSimpleCellCycleModelsForCrypt: No leaks found (test output)

+

TestSimpleDataWriter: No leaks found (test output)

+

TestSimpleImpedanceProblem: No leaks found (test output)

+

TestSimpleLinearEllipticSolver: No leaks found (test output)

+

TestSimpleLinearParabolicSolver: No leaks found (test output)

+

TestSimpleNonlinearEllipticSolver: No leaks found (test output)

+

TestSimpleTargetAreaModifier: No leaks found (test output)

+

TestSimulationTime: No leaks found (test output)

+

TestSimulationsWithEllipticBoxDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithEllipticGrowingDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithParabolicBoxDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithParabolicGrowingDomainPdeModifier: No leaks found (test output)

+

TestSingleOdeWntCellCycleModel: No leaks found (test output)

+

TestSloughingCellKillers: No leaks found (test output)

+

TestSolveLaplacianWithQuadratics: No leaks found (test output)

+

TestSolvingCoupledPdes: No leaks found (test output)

+

TestSolvingNonlinearPdesTutorial: No leaks found (test output)

+

TestSolvingOdesTutorial: No leaks found (test output)

+

TestSolvingStiffOdeSystems: No leaks found (test output)

+

TestSpiralWaveAndPhase: No leaks found (test output)

+

TestSteadyStateRunner: No leaks found (test output)

+

TestStepSizeException: No leaks found (test output)

+

TestStimulus: No leaks found (test output)

+

TestStimulusBoundaryCondition: No leaks found (test output)

+

TestStimulusFactory: No leaks found (test output)

+

TestStokesFlowAssembler: No leaks found (test output)

+

TestStokesFlowSolver: No leaks found (test output)

+

TestStreeterFibreGenerator: No leaks found (test output)

+

TestSuperellipseGenerator: No leaks found (test output)

+

TestT2SwapCellKiller: No leaks found (test output)

+

TestTargetAreaLinearGrowthModifier: No leaks found (test output)

+

TestTetrahedralMesh: No leaks found (test output)

+

TestTimeAdaptivityController: No leaks found (test output)

+

TestTimeStepper: No leaks found (test output)

+

TestTimer: No leaks found (test output)

+

TestToroidal2dMesh: No leaks found (test output)

+

TestToroidal2dVertexMesh: No leaks found (test output)

+

TestToroidalHoneycombMeshGenerator: No leaks found (test output)

+

TestToroidalHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestTransformations: No leaks found (test output)

+

TestTrianglesMeshReader: No leaks found (test output)

+

TestTysonNovak2001OdeSystem: No leaks found (test output)

+

TestUblasCustomFunctions: No leaks found (test output)

+

TestUniformGridRandomFieldGenerator: No leaks found (test output)

+

TestVanLeeuwen2009WntSwatCellCycleOdeSystem: No leaks found (test output)

+

TestVentilationProblem: No leaks found (test output)

+

TestVertexBasedCellPopulation: No leaks found (test output)

+

TestVertexBasedCellPopulationForCrypt: No leaks found (test output)

+

TestVertexBasedDivisionRules: No leaks found (test output)

+

TestVertexCryptBoundaryForce: No leaks found (test output)

+

TestVertexElement: No leaks found (test output)

+

TestVertexMesh: No leaks found (test output)

+

TestVertexMeshReader: No leaks found (test output)

+

TestVertexMeshWriter: No leaks found (test output)

+

TestVisualizingWithParaviewTutorial: No leaks found (test output)

+

TestVoltageInterpolaterOntoMechanicsMesh: No leaks found (test output)

+

TestVolumeTrackingModifier: No leaks found (test output)

+

TestVoronoiVertexMeshGenerator: No leaks found (test output)

+

TestVtkMeshReader: No leaks found (test output)

+

TestVtkNonlinearElasticitySolutionWriter: No leaks found (test output)

+

TestWarnings: No leaks found (test output)

+

TestWntCellCycleOdeSystem: No leaks found (test output)

+

TestWntConcentration: No leaks found (test output)

+

TestWritingPdeSolversTutorial: No leaks found (test output)

+

TestWritingPdeSolversTwoTutorial: No leaks found (test output)

+

TestWritingTestsTutorial: No leaks found (test output)

+

TestXmlMeshWriters: No leaks found (test output)


+ + diff --git a/log-files/index.html b/log-files/index.html index 92d2cf098..5c67836e0 100644 --- a/log-files/index.html +++ b/log-files/index.html @@ -15,6 +15,16 @@

Index of Valgrind Memcheck output

September 2024

+ + + + + +
+ 2024-09-20_21-41-09 + green273-pychaste-merge + caf6ea47752a7c35ab35a7ad53e8a46352d07dba +
2024-09-19_14-37-40