diff --git a/log-files/2024-02-21_13-45-57/Test1D3DLinearEllipticSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/Test1D3DLinearEllipticSolver_valgrind.txt new file mode 100644 index 0000000000..6b3a690bb8 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/Test1D3DLinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489449== Memcheck, a memory error detector +==1489449== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489449== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489449== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/Test1D3DLinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==1489449== Parent PID: 1488630 +==1489449== +==1489449== +==1489449== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489449== Open file descriptor 12: +==1489449== at 0x815707D: pipe (pipe.c:29) +==1489449== by 0x1014507D: ??? +==1489449== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489449== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489449== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489449== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489449== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489449== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489449== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489449== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489449== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489449== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489449== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489449== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18) +==1489449== +==1489449== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489449== at 0x815BA1C: __open_nocancel (open64_nocancel.c:39) +==1489449== by 0x80DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489449== by 0x79A3822: ??? +==1489449== by 0x79A396F: ??? +==1489449== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489449== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489449== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489449== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489449== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489449== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489449== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489449== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489449== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489449== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489449== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489449== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489449== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489449== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489449== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18) +==1489449== +==1489449== Open file descriptor 115: +==1489449== +==1489449== +==1489449== Open file descriptor 112: +==1489449== +==1489449== +==1489449== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1D3DLinearEllipticSolver_valgrind.txt +==1489449== +==1489449== +==1489449== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489449== +==1489449== +==1489449== +==1489449== HEAP SUMMARY: +==1489449== in use at exit: 995,489 bytes in 13,913 blocks +==1489449== total heap usage: 63,616 allocs, 49,703 frees, 1,572,321,978 bytes allocated +==1489449== +==1489449== LEAK SUMMARY: +==1489449== definitely lost: 0 bytes in 0 blocks +==1489449== indirectly lost: 0 bytes in 0 blocks +==1489449== possibly lost: 0 bytes in 0 blocks +==1489449== still reachable: 24 bytes in 2 blocks +==1489449== suppressed: 995,465 bytes in 13,911 blocks +==1489449== Reachable blocks (those to which a pointer was found) are not shown. +==1489449== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489449== +==1489449== For lists of detected and suppressed errors, rerun with: -s +==1489449== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt b/log-files/2024-02-21_13-45-57/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt new file mode 100644 index 0000000000..7058326e06 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt @@ -0,0 +1,73 @@ +==1506806== Memcheck, a memory error detector +==1506806== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506806== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506806== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/Test1dMonodomainShannonCvodeBenchmarks -malloc_debug -malloc_dump -memory_info +==1506806== Parent PID: 1488630 +==1506806== +==1506806== +==1506806== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506806== Open file descriptor 12: +==1506806== at 0xA43607D: pipe (pipe.c:29) +==1506806== by 0x13F9607D: ??? +==1506806== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506806== by 0xBB2F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506806== by 0xBAC8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506806== by 0xA7BFD38: PetscInitialize (pinit.c:924) +==1506806== by 0x9D1B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506806== by 0x9D1B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506806== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506806== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506806== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506806== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506806== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506806== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18) +==1506806== +==1506806== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506806== at 0xA43AA1C: __open_nocancel (open64_nocancel.c:39) +==1506806== by 0xA3BEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506806== by 0x9D4F822: ??? +==1506806== by 0x9D4F96F: ??? +==1506806== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506806== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506806== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506806== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506806== by 0xBB2F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506806== by 0xBAC8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506806== by 0xA7BFD38: PetscInitialize (pinit.c:924) +==1506806== by 0x9D1B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506806== by 0x9D1B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506806== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506806== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506806== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506806== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506806== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506806== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18) +==1506806== +==1506806== Open file descriptor 115: +==1506806== +==1506806== +==1506806== Open file descriptor 112: +==1506806== +==1506806== +==1506806== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt +==1506806== +==1506806== +==1506806== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506806== +==1506806== +==1506806== +==1506806== HEAP SUMMARY: +==1506806== in use at exit: 995,990 bytes in 13,919 blocks +==1506806== total heap usage: 332,076 allocs, 318,157 frees, 1,631,136,732 bytes allocated +==1506806== +==1506806== LEAK SUMMARY: +==1506806== definitely lost: 0 bytes in 0 blocks +==1506806== indirectly lost: 0 bytes in 0 blocks +==1506806== possibly lost: 0 bytes in 0 blocks +==1506806== still reachable: 24 bytes in 2 blocks +==1506806== suppressed: 995,966 bytes in 13,917 blocks +==1506806== Reachable blocks (those to which a pointer was found) are not shown. +==1506806== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506806== +==1506806== For lists of detected and suppressed errors, rerun with: -s +==1506806== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 42 from 34) diff --git a/log-files/2024-02-21_13-45-57/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt b/log-files/2024-02-21_13-45-57/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt new file mode 100644 index 0000000000..04c035f6f3 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt @@ -0,0 +1,73 @@ +==1490416== Memcheck, a memory error detector +==1490416== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490416== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490416== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info +==1490416== Parent PID: 1488630 +==1490416== +==1490416== +==1490416== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490416== Open file descriptor 12: +==1490416== at 0xEB6A07D: pipe (pipe.c:29) +==1490416== by 0x18A1D07D: ??? +==1490416== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490416== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490416== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490416== by 0xF49BD38: PetscInitialize (pinit.c:924) +==1490416== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490416== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490416== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490416== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490416== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490416== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490416== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490416== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) +==1490416== +==1490416== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490416== at 0xEB6EA1C: __open_nocancel (open64_nocancel.c:39) +==1490416== by 0xEAF2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490416== by 0xE49F822: ??? +==1490416== by 0xE49F96F: ??? +==1490416== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490416== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490416== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490416== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490416== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490416== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490416== by 0xF49BD38: PetscInitialize (pinit.c:924) +==1490416== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490416== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490416== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490416== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490416== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490416== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490416== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490416== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) +==1490416== +==1490416== Open file descriptor 115: +==1490416== +==1490416== +==1490416== Open file descriptor 112: +==1490416== +==1490416== +==1490416== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt +==1490416== +==1490416== +==1490416== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490416== +==1490416== +==1490416== +==1490416== HEAP SUMMARY: +==1490416== in use at exit: 995,585 bytes in 13,914 blocks +==1490416== total heap usage: 1,136,969 allocs, 1,123,055 frees, 1,649,023,225 bytes allocated +==1490416== +==1490416== LEAK SUMMARY: +==1490416== definitely lost: 0 bytes in 0 blocks +==1490416== indirectly lost: 0 bytes in 0 blocks +==1490416== possibly lost: 0 bytes in 0 blocks +==1490416== still reachable: 56 bytes in 3 blocks +==1490416== suppressed: 995,529 bytes in 13,911 blocks +==1490416== Reachable blocks (those to which a pointer was found) are not shown. +==1490416== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490416== +==1490416== For lists of detected and suppressed errors, rerun with: -s +==1490416== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestAbstractAnalyticJacobian_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAbstractAnalyticJacobian_valgrind.txt new file mode 100644 index 0000000000..da437d0746 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAbstractAnalyticJacobian_valgrind.txt @@ -0,0 +1,73 @@ +==1489364== Memcheck, a memory error detector +==1489364== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489364== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489364== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractAnalyticJacobian -malloc_debug -malloc_dump -memory_info +==1489364== Parent PID: 1488630 +==1489364== +==1489364== +==1489364== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489364== Open file descriptor 12: +==1489364== at 0x4F1307D: pipe (pipe.c:29) +==1489364== by 0xB1E807D: ??? +==1489364== by 0x8CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489364== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489364== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489364== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489364== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489364== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489364== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489364== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489364== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489364== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489364== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489364== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18) +==1489364== +==1489364== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489364== at 0x4F17A1C: __open_nocancel (open64_nocancel.c:39) +==1489364== by 0x4E9BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489364== by 0x4B71822: ??? +==1489364== by 0x4B7196F: ??? +==1489364== by 0x8D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489364== by 0x8D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489364== by 0x8D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489364== by 0x8CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489364== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489364== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489364== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489364== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489364== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489364== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489364== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489364== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489364== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489364== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489364== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18) +==1489364== +==1489364== Open file descriptor 115: +==1489364== +==1489364== +==1489364== Open file descriptor 112: +==1489364== +==1489364== +==1489364== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractAnalyticJacobian_valgrind.txt +==1489364== +==1489364== +==1489364== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489364== +==1489364== +==1489364== +==1489364== HEAP SUMMARY: +==1489364== in use at exit: 995,137 bytes in 13,913 blocks +==1489364== total heap usage: 57,687 allocs, 43,774 frees, 1,571,247,779 bytes allocated +==1489364== +==1489364== LEAK SUMMARY: +==1489364== definitely lost: 0 bytes in 0 blocks +==1489364== indirectly lost: 0 bytes in 0 blocks +==1489364== possibly lost: 0 bytes in 0 blocks +==1489364== still reachable: 24 bytes in 2 blocks +==1489364== suppressed: 995,113 bytes in 13,911 blocks +==1489364== Reachable blocks (those to which a pointer was found) are not shown. +==1489364== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489364== +==1489364== For lists of detected and suppressed errors, rerun with: -s +==1489364== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-02-21_13-45-57/TestAbstractContinuumMechanicsAssembler_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAbstractContinuumMechanicsAssembler_valgrind.txt new file mode 100644 index 0000000000..153678da53 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAbstractContinuumMechanicsAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==1489691== Memcheck, a memory error detector +==1489691== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489691== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489691== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestAbstractContinuumMechanicsAssembler -malloc_debug -malloc_dump -memory_info +==1489691== Parent PID: 1488630 +==1489691== +==1489691== +==1489691== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489691== Open file descriptor 12: +==1489691== at 0x815707D: pipe (pipe.c:29) +==1489691== by 0x1014507D: ??? +==1489691== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489691== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489691== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489691== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489691== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489691== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489691== by 0x1507F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489691== by 0x14B24D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489691== by 0x14E462: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489691== by 0x14E302: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489691== by 0x14E999: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489691== by 0x149675: main (TestAbstractContinuumMechanicsAssembler.cpp:19) +==1489691== +==1489691== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489691== at 0x815BA1C: __open_nocancel (open64_nocancel.c:39) +==1489691== by 0x80DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489691== by 0x79A3822: ??? +==1489691== by 0x79A396F: ??? +==1489691== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489691== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489691== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489691== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489691== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489691== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489691== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489691== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489691== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489691== by 0x1507F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489691== by 0x14B24D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489691== by 0x14E462: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489691== by 0x14E302: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489691== by 0x14E999: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489691== by 0x149675: main (TestAbstractContinuumMechanicsAssembler.cpp:19) +==1489691== +==1489691== Open file descriptor 115: +==1489691== +==1489691== +==1489691== Open file descriptor 112: +==1489691== +==1489691== +==1489691== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractContinuumMechanicsAssembler_valgrind.txt +==1489691== +==1489691== +==1489691== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489691== +==1489691== +==1489691== +==1489691== HEAP SUMMARY: +==1489691== in use at exit: 995,489 bytes in 13,913 blocks +==1489691== total heap usage: 62,934 allocs, 49,021 frees, 1,572,988,132 bytes allocated +==1489691== +==1489691== LEAK SUMMARY: +==1489691== definitely lost: 0 bytes in 0 blocks +==1489691== indirectly lost: 0 bytes in 0 blocks +==1489691== possibly lost: 0 bytes in 0 blocks +==1489691== still reachable: 24 bytes in 2 blocks +==1489691== suppressed: 995,465 bytes in 13,911 blocks +==1489691== Reachable blocks (those to which a pointer was found) are not shown. +==1489691== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489691== +==1489691== For lists of detected and suppressed errors, rerun with: -s +==1489691== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestAbstractContractionCellFactory_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAbstractContractionCellFactory_valgrind.txt new file mode 100644 index 0000000000..279720dc5c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAbstractContractionCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==1506928== Memcheck, a memory error detector +==1506928== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506928== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506928== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestAbstractContractionCellFactory -malloc_debug -malloc_dump -memory_info +==1506928== Parent PID: 1488630 +==1506928== +==1506928== +==1506928== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506928== Open file descriptor 12: +==1506928== at 0xA54307D: pipe (pipe.c:29) +==1506928== by 0x13F9607D: ??? +==1506928== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506928== by 0xBABC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506928== by 0xBA55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506928== by 0xA74CD38: PetscInitialize (pinit.c:924) +==1506928== by 0x9E28153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506928== by 0x9E281A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506928== by 0x11F78E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506928== by 0x11A553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506928== by 0x11C978: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506928== by 0x11C873: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506928== by 0x11CE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506928== by 0x118D55: main (TestAbstractContractionCellFactory.cpp:18) +==1506928== +==1506928== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506928== at 0xA547A1C: __open_nocancel (open64_nocancel.c:39) +==1506928== by 0xA4CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506928== by 0x9E5C822: ??? +==1506928== by 0x9E5C96F: ??? +==1506928== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506928== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506928== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506928== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506928== by 0xBABC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506928== by 0xBA55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506928== by 0xA74CD38: PetscInitialize (pinit.c:924) +==1506928== by 0x9E28153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506928== by 0x9E281A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506928== by 0x11F78E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506928== by 0x11A553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506928== by 0x11C978: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506928== by 0x11C873: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506928== by 0x11CE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506928== by 0x118D55: main (TestAbstractContractionCellFactory.cpp:18) +==1506928== +==1506928== Open file descriptor 115: +==1506928== +==1506928== +==1506928== Open file descriptor 112: +==1506928== +==1506928== +==1506928== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractContractionCellFactory_valgrind.txt +==1506928== +==1506928== +==1506928== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506928== +==1506928== +==1506928== +==1506928== HEAP SUMMARY: +==1506928== in use at exit: 996,049 bytes in 13,923 blocks +==1506928== total heap usage: 182,353 allocs, 168,430 frees, 1,596,498,810 bytes allocated +==1506928== +==1506928== LEAK SUMMARY: +==1506928== definitely lost: 0 bytes in 0 blocks +==1506928== indirectly lost: 0 bytes in 0 blocks +==1506928== possibly lost: 0 bytes in 0 blocks +==1506928== still reachable: 24 bytes in 2 blocks +==1506928== suppressed: 996,025 bytes in 13,921 blocks +==1506928== Reachable blocks (those to which a pointer was found) are not shown. +==1506928== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506928== +==1506928== For lists of detected and suppressed errors, rerun with: -s +==1506928== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2024-02-21_13-45-57/TestAbstractCvodeSystem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAbstractCvodeSystem_valgrind.txt new file mode 100644 index 0000000000..8893341879 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAbstractCvodeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==1489345== Memcheck, a memory error detector +==1489345== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489345== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489345== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractCvodeSystem -malloc_debug -malloc_dump -memory_info +==1489345== Parent PID: 1488630 +==1489345== +==1489345== +==1489345== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489345== Open file descriptor 12: +==1489345== at 0x644107D: pipe (pipe.c:29) +==1489345== by 0xB1CC07D: ??? +==1489345== by 0x8CC74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489345== by 0x603F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489345== by 0x5FD8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489345== by 0x4CCFD38: PetscInitialize (pinit.c:924) +==1489345== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489345== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489345== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489345== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489345== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489345== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489345== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489345== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) +==1489345== +==1489345== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489345== at 0x6445A1C: __open_nocancel (open64_nocancel.c:39) +==1489345== by 0x63C9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489345== by 0x4B71822: ??? +==1489345== by 0x4B7196F: ??? +==1489345== by 0x8D6C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489345== by 0x8D6C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489345== by 0x8D22922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489345== by 0x8CC72DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489345== by 0x603F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489345== by 0x5FD8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489345== by 0x4CCFD38: PetscInitialize (pinit.c:924) +==1489345== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489345== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489345== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489345== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489345== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489345== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489345== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489345== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) +==1489345== +==1489345== Open file descriptor 115: +==1489345== +==1489345== +==1489345== Open file descriptor 112: +==1489345== +==1489345== +==1489345== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractCvodeSystem_valgrind.txt +==1489345== +==1489345== +==1489345== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489345== +==1489345== +==1489345== +==1489345== HEAP SUMMARY: +==1489345== in use at exit: 995,121 bytes in 13,913 blocks +==1489345== total heap usage: 59,145 allocs, 45,232 frees, 1,571,445,465 bytes allocated +==1489345== +==1489345== LEAK SUMMARY: +==1489345== definitely lost: 0 bytes in 0 blocks +==1489345== indirectly lost: 0 bytes in 0 blocks +==1489345== possibly lost: 0 bytes in 0 blocks +==1489345== still reachable: 24 bytes in 2 blocks +==1489345== suppressed: 995,097 bytes in 13,911 blocks +==1489345== Reachable blocks (those to which a pointer was found) are not shown. +==1489345== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489345== +==1489345== For lists of detected and suppressed errors, rerun with: -s +==1489345== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestAbstractFeCableIntegralAssembler_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAbstractFeCableIntegralAssembler_valgrind.txt new file mode 100644 index 0000000000..85e05ae07c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAbstractFeCableIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==1489572== Memcheck, a memory error detector +==1489572== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489572== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489572== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeCableIntegralAssembler -malloc_debug -malloc_dump -memory_info +==1489572== Parent PID: 1488630 +==1489572== +==1489572== +==1489572== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489572== Open file descriptor 12: +==1489572== at 0x815707D: pipe (pipe.c:29) +==1489572== by 0x1014507D: ??? +==1489572== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489572== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489572== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489572== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489572== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489572== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489572== by 0x136062: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489572== by 0x130C2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489572== by 0x133CD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489572== by 0x133B72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489572== by 0x134209: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489572== by 0x12F055: main (TestAbstractFeCableIntegralAssembler.cpp:19) +==1489572== +==1489572== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489572== at 0x815BA1C: __open_nocancel (open64_nocancel.c:39) +==1489572== by 0x80DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489572== by 0x79A3822: ??? +==1489572== by 0x79A396F: ??? +==1489572== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489572== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489572== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489572== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489572== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489572== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489572== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489572== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489572== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489572== by 0x136062: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489572== by 0x130C2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489572== by 0x133CD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489572== by 0x133B72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489572== by 0x134209: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489572== by 0x12F055: main (TestAbstractFeCableIntegralAssembler.cpp:19) +==1489572== +==1489572== Open file descriptor 115: +==1489572== +==1489572== +==1489572== Open file descriptor 112: +==1489572== +==1489572== +==1489572== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeCableIntegralAssembler_valgrind.txt +==1489572== +==1489572== +==1489572== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489572== +==1489572== +==1489572== +==1489572== HEAP SUMMARY: +==1489572== in use at exit: 995,489 bytes in 13,913 blocks +==1489572== total heap usage: 72,453 allocs, 58,540 frees, 1,572,435,495 bytes allocated +==1489572== +==1489572== LEAK SUMMARY: +==1489572== definitely lost: 0 bytes in 0 blocks +==1489572== indirectly lost: 0 bytes in 0 blocks +==1489572== possibly lost: 0 bytes in 0 blocks +==1489572== still reachable: 24 bytes in 2 blocks +==1489572== suppressed: 995,465 bytes in 13,911 blocks +==1489572== Reachable blocks (those to which a pointer was found) are not shown. +==1489572== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489572== +==1489572== For lists of detected and suppressed errors, rerun with: -s +==1489572== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt new file mode 100644 index 0000000000..c2e09309d8 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==1489587== Memcheck, a memory error detector +==1489587== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489587== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489587== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeSurfaceIntegralAssembler -malloc_debug -malloc_dump -memory_info +==1489587== Parent PID: 1488630 +==1489587== +==1489587== +==1489587== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489587== Open file descriptor 12: +==1489587== at 0x815707D: pipe (pipe.c:29) +==1489587== by 0x1014507D: ??? +==1489587== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489587== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489587== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489587== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489587== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489587== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489587== by 0x12D738: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489587== by 0x128933: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489587== by 0x12B4AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489587== by 0x12B3A5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489587== by 0x12B9B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489587== by 0x127135: main (TestAbstractFeSurfaceIntegralAssembler.cpp:18) +==1489587== +==1489587== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489587== at 0x815BA1C: __open_nocancel (open64_nocancel.c:39) +==1489587== by 0x80DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489587== by 0x79A3822: ??? +==1489587== by 0x79A396F: ??? +==1489587== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489587== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489587== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489587== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489587== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489587== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489587== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489587== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489587== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489587== by 0x12D738: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489587== by 0x128933: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489587== by 0x12B4AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489587== by 0x12B3A5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489587== by 0x12B9B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489587== by 0x127135: main (TestAbstractFeSurfaceIntegralAssembler.cpp:18) +==1489587== +==1489587== Open file descriptor 115: +==1489587== +==1489587== +==1489587== Open file descriptor 112: +==1489587== +==1489587== +==1489587== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt +==1489587== +==1489587== +==1489587== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489587== +==1489587== +==1489587== +==1489587== HEAP SUMMARY: +==1489587== in use at exit: 995,489 bytes in 13,913 blocks +==1489587== total heap usage: 60,467 allocs, 46,554 frees, 1,571,536,755 bytes allocated +==1489587== +==1489587== LEAK SUMMARY: +==1489587== definitely lost: 0 bytes in 0 blocks +==1489587== indirectly lost: 0 bytes in 0 blocks +==1489587== possibly lost: 0 bytes in 0 blocks +==1489587== still reachable: 24 bytes in 2 blocks +==1489587== suppressed: 995,465 bytes in 13,911 blocks +==1489587== Reachable blocks (those to which a pointer was found) are not shown. +==1489587== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489587== +==1489587== For lists of detected and suppressed errors, rerun with: -s +==1489587== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestAbstractFeVolumeIntegralAssembler_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAbstractFeVolumeIntegralAssembler_valgrind.txt new file mode 100644 index 0000000000..ee16c03d33 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAbstractFeVolumeIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==1489601== Memcheck, a memory error detector +==1489601== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489601== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489601== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeVolumeIntegralAssembler -malloc_debug -malloc_dump -memory_info +==1489601== Parent PID: 1488630 +==1489601== +==1489601== +==1489601== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489601== Open file descriptor 12: +==1489601== at 0x815707D: pipe (pipe.c:29) +==1489601== by 0x1014507D: ??? +==1489601== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489601== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489601== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489601== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489601== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489601== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489601== by 0x15E73C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489601== by 0x15920D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489601== by 0x15C3AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489601== by 0x15C24C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489601== by 0x15C8E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489601== by 0x157635: main (TestAbstractFeVolumeIntegralAssembler.cpp:19) +==1489601== +==1489601== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489601== at 0x815BA1C: __open_nocancel (open64_nocancel.c:39) +==1489601== by 0x80DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489601== by 0x79A3822: ??? +==1489601== by 0x79A396F: ??? +==1489601== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489601== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489601== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489601== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489601== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489601== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489601== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489601== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489601== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489601== by 0x15E73C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489601== by 0x15920D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489601== by 0x15C3AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489601== by 0x15C24C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489601== by 0x15C8E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489601== by 0x157635: main (TestAbstractFeVolumeIntegralAssembler.cpp:19) +==1489601== +==1489601== Open file descriptor 115: +==1489601== +==1489601== +==1489601== Open file descriptor 112: +==1489601== +==1489601== +==1489601== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeVolumeIntegralAssembler_valgrind.txt +==1489601== +==1489601== +==1489601== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489601== +==1489601== +==1489601== +==1489601== HEAP SUMMARY: +==1489601== in use at exit: 995,489 bytes in 13,913 blocks +==1489601== total heap usage: 69,563 allocs, 55,650 frees, 1,572,766,860 bytes allocated +==1489601== +==1489601== LEAK SUMMARY: +==1489601== definitely lost: 0 bytes in 0 blocks +==1489601== indirectly lost: 0 bytes in 0 blocks +==1489601== possibly lost: 0 bytes in 0 blocks +==1489601== still reachable: 24 bytes in 2 blocks +==1489601== suppressed: 995,465 bytes in 13,911 blocks +==1489601== Reachable blocks (those to which a pointer was found) are not shown. +==1489601== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489601== +==1489601== For lists of detected and suppressed errors, rerun with: -s +==1489601== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestAbstractFunctionalCalculator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAbstractFunctionalCalculator_valgrind.txt new file mode 100644 index 0000000000..a9c07884d5 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAbstractFunctionalCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==1489602== Memcheck, a memory error detector +==1489602== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489602== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489602== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFunctionalCalculator -malloc_debug -malloc_dump -memory_info +==1489602== Parent PID: 1488630 +==1489602== +==1489602== +==1489602== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489602== Open file descriptor 12: +==1489602== at 0x81FF07D: pipe (pipe.c:29) +==1489602== by 0x1014507D: ??? +==1489602== by 0xBA824CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489602== by 0x7A20418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489602== by 0x79B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489602== by 0x668AD38: PetscInitialize (pinit.c:924) +==1489602== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489602== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489602== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489602== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489602== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489602== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489602== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489602== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) +==1489602== +==1489602== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489602== at 0x8203A1C: __open_nocancel (open64_nocancel.c:39) +==1489602== by 0x8187BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489602== by 0x7914822: ??? +==1489602== by 0x791496F: ??? +==1489602== by 0xBB276DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489602== by 0xBB27938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489602== by 0xBADD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489602== by 0xBA822DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489602== by 0x7A20418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489602== by 0x79B9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489602== by 0x668AD38: PetscInitialize (pinit.c:924) +==1489602== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489602== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489602== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489602== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489602== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489602== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489602== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489602== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) +==1489602== +==1489602== Open file descriptor 115: +==1489602== +==1489602== +==1489602== Open file descriptor 112: +==1489602== +==1489602== +==1489602== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFunctionalCalculator_valgrind.txt +==1489602== +==1489602== +==1489602== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489602== +==1489602== +==1489602== +==1489602== HEAP SUMMARY: +==1489602== in use at exit: 995,489 bytes in 13,913 blocks +==1489602== total heap usage: 102,461 allocs, 88,548 frees, 1,573,634,966 bytes allocated +==1489602== +==1489602== LEAK SUMMARY: +==1489602== definitely lost: 0 bytes in 0 blocks +==1489602== indirectly lost: 0 bytes in 0 blocks +==1489602== possibly lost: 0 bytes in 0 blocks +==1489602== still reachable: 24 bytes in 2 blocks +==1489602== suppressed: 995,465 bytes in 13,911 blocks +==1489602== Reachable blocks (those to which a pointer was found) are not shown. +==1489602== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489602== +==1489602== For lists of detected and suppressed errors, rerun with: -s +==1489602== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestAbstractIvpOdeSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAbstractIvpOdeSolver_valgrind.txt new file mode 100644 index 0000000000..af70f0c9a2 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAbstractIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489344== Memcheck, a memory error detector +==1489344== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489344== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489344== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==1489344== Parent PID: 1488630 +==1489344== +==1489344== +==1489344== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489344== Open file descriptor 12: +==1489344== at 0x503C07D: pipe (pipe.c:29) +==1489344== by 0xB1E807D: ??? +==1489344== by 0x8CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489344== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489344== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489344== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489344== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489344== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489344== by 0x13ABB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489344== by 0x13250D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489344== by 0x13549A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489344== by 0x13533A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489344== by 0x1359D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489344== by 0x12FAD5: main (TestAbstractIvpOdeSolver.cpp:19) +==1489344== +==1489344== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489344== at 0x5040A1C: __open_nocancel (open64_nocancel.c:39) +==1489344== by 0x4FC4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489344== by 0x4B71822: ??? +==1489344== by 0x4B7196F: ??? +==1489344== by 0x8D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489344== by 0x8D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489344== by 0x8D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489344== by 0x8CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489344== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489344== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489344== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489344== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489344== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489344== by 0x13ABB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489344== by 0x13250D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489344== by 0x13549A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489344== by 0x13533A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489344== by 0x1359D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489344== by 0x12FAD5: main (TestAbstractIvpOdeSolver.cpp:19) +==1489344== +==1489344== Open file descriptor 115: +==1489344== +==1489344== +==1489344== Open file descriptor 112: +==1489344== +==1489344== +==1489344== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractIvpOdeSolver_valgrind.txt +==1489344== +==1489344== +==1489344== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489344== +==1489344== +==1489344== +==1489344== HEAP SUMMARY: +==1489344== in use at exit: 995,137 bytes in 13,913 blocks +==1489344== total heap usage: 151,156 allocs, 137,243 frees, 1,579,168,310 bytes allocated +==1489344== +==1489344== LEAK SUMMARY: +==1489344== definitely lost: 0 bytes in 0 blocks +==1489344== indirectly lost: 0 bytes in 0 blocks +==1489344== possibly lost: 0 bytes in 0 blocks +==1489344== still reachable: 24 bytes in 2 blocks +==1489344== suppressed: 995,113 bytes in 13,911 blocks +==1489344== Reachable blocks (those to which a pointer was found) are not shown. +==1489344== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489344== +==1489344== For lists of detected and suppressed errors, rerun with: -s +==1489344== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestAbstractOdeSystem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAbstractOdeSystem_valgrind.txt new file mode 100644 index 0000000000..6c8d97d5a9 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAbstractOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==1489354== Memcheck, a memory error detector +==1489354== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489354== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489354== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractOdeSystem -malloc_debug -malloc_dump -memory_info +==1489354== Parent PID: 1488630 +==1489354== +==1489354== +==1489354== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489354== Open file descriptor 12: +==1489354== at 0x640A07D: pipe (pipe.c:29) +==1489354== by 0xB1E607D: ??? +==1489354== by 0x8CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489354== by 0x603F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489354== by 0x5FD8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489354== by 0x4CCFD38: PetscInitialize (pinit.c:924) +==1489354== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489354== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489354== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489354== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489354== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489354== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489354== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489354== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) +==1489354== +==1489354== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489354== at 0x640EA1C: __open_nocancel (open64_nocancel.c:39) +==1489354== by 0x6392BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489354== by 0x4B71822: ??? +==1489354== by 0x4B7196F: ??? +==1489354== by 0x8D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489354== by 0x8D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489354== by 0x8D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489354== by 0x8CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489354== by 0x603F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489354== by 0x5FD8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489354== by 0x4CCFD38: PetscInitialize (pinit.c:924) +==1489354== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489354== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489354== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489354== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489354== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489354== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489354== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489354== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) +==1489354== +==1489354== Open file descriptor 115: +==1489354== +==1489354== +==1489354== Open file descriptor 112: +==1489354== +==1489354== +==1489354== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractOdeSystem_valgrind.txt +==1489354== +==1489354== +==1489354== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489354== +==1489354== +==1489354== +==1489354== HEAP SUMMARY: +==1489354== in use at exit: 995,137 bytes in 13,913 blocks +==1489354== total heap usage: 58,626 allocs, 44,713 frees, 1,571,414,316 bytes allocated +==1489354== +==1489354== LEAK SUMMARY: +==1489354== definitely lost: 0 bytes in 0 blocks +==1489354== indirectly lost: 0 bytes in 0 blocks +==1489354== possibly lost: 0 bytes in 0 blocks +==1489354== still reachable: 24 bytes in 2 blocks +==1489354== suppressed: 995,113 bytes in 13,911 blocks +==1489354== Reachable blocks (those to which a pointer was found) are not shown. +==1489354== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489354== +==1489354== For lists of detected and suppressed errors, rerun with: -s +==1489354== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestAbstractPurkinjeCellFactory_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAbstractPurkinjeCellFactory_valgrind.txt new file mode 100644 index 0000000000..0ee392cbef --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAbstractPurkinjeCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==1506931== Memcheck, a memory error detector +==1506931== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506931== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506931== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestAbstractPurkinjeCellFactory -malloc_debug -malloc_dump -memory_info +==1506931== Parent PID: 1488630 +==1506931== +==1506931== +==1506931== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506931== Open file descriptor 12: +==1506931== at 0xA17E07D: pipe (pipe.c:29) +==1506931== by 0x13F9607D: ??? +==1506931== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506931== by 0xB879418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506931== by 0xB812D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506931== by 0xA509D38: PetscInitialize (pinit.c:924) +==1506931== by 0x9A65153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506931== by 0x9A651A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506931== by 0x11B060: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506931== by 0x11664D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506931== by 0x118D6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506931== by 0x118C0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506931== by 0x1192A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506931== by 0x114A75: main (TestAbstractPurkinjeCellFactory.cpp:19) +==1506931== +==1506931== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506931== at 0xA182A1C: __open_nocancel (open64_nocancel.c:39) +==1506931== by 0xA106BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506931== by 0x9A99822: ??? +==1506931== by 0x9A9996F: ??? +==1506931== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506931== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506931== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506931== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506931== by 0xB879418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506931== by 0xB812D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506931== by 0xA509D38: PetscInitialize (pinit.c:924) +==1506931== by 0x9A65153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506931== by 0x9A651A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506931== by 0x11B060: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506931== by 0x11664D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506931== by 0x118D6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506931== by 0x118C0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506931== by 0x1192A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506931== by 0x114A75: main (TestAbstractPurkinjeCellFactory.cpp:19) +==1506931== +==1506931== Open file descriptor 115: +==1506931== +==1506931== +==1506931== Open file descriptor 112: +==1506931== +==1506931== +==1506931== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractPurkinjeCellFactory_valgrind.txt +==1506931== +==1506931== +==1506931== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506931== +==1506931== +==1506931== +==1506931== HEAP SUMMARY: +==1506931== in use at exit: 995,569 bytes in 13,913 blocks +==1506931== total heap usage: 72,530 allocs, 58,617 frees, 1,572,412,266 bytes allocated +==1506931== +==1506931== LEAK SUMMARY: +==1506931== definitely lost: 0 bytes in 0 blocks +==1506931== indirectly lost: 0 bytes in 0 blocks +==1506931== possibly lost: 0 bytes in 0 blocks +==1506931== still reachable: 24 bytes in 2 blocks +==1506931== suppressed: 995,545 bytes in 13,911 blocks +==1506931== Reachable blocks (those to which a pointer was found) are not shown. +==1506931== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506931== +==1506931== For lists of detected and suppressed errors, rerun with: -s +==1506931== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestAcinarUnitModels_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAcinarUnitModels_valgrind.txt new file mode 100644 index 0000000000..df6e33999c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAcinarUnitModels_valgrind.txt @@ -0,0 +1,36 @@ +==1504897== Memcheck, a memory error detector +==1504897== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504897== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504897== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAcinarUnitModels -malloc_debug -malloc_dump -memory_info +==1504897== Parent PID: 1488630 +==1504897== +==1504897== +==1504897== FILE DESCRIPTORS: 7 open (3 std) at exit. +==1504897== Open file descriptor 115: +==1504897== +==1504897== +==1504897== Open file descriptor 112: +==1504897== +==1504897== +==1504897== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAcinarUnitModels_valgrind.txt +==1504897== +==1504897== +==1504897== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504897== +==1504897== +==1504897== +==1504897== HEAP SUMMARY: +==1504897== in use at exit: 24 bytes in 2 blocks +==1504897== total heap usage: 56,596 allocs, 56,594 frees, 1,336,482 bytes allocated +==1504897== +==1504897== LEAK SUMMARY: +==1504897== definitely lost: 0 bytes in 0 blocks +==1504897== indirectly lost: 0 bytes in 0 blocks +==1504897== possibly lost: 0 bytes in 0 blocks +==1504897== still reachable: 24 bytes in 2 blocks +==1504897== suppressed: 0 bytes in 0 blocks +==1504897== Reachable blocks (those to which a pointer was found) are not shown. +==1504897== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504897== +==1504897== For lists of detected and suppressed errors, rerun with: -s +==1504897== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-02-21_13-45-57/TestAirwayBranch_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAirwayBranch_valgrind.txt new file mode 100644 index 0000000000..c22a707ba1 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAirwayBranch_valgrind.txt @@ -0,0 +1,36 @@ +==1504747== Memcheck, a memory error detector +==1504747== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504747== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504747== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayBranch -malloc_debug -malloc_dump -memory_info +==1504747== Parent PID: 1488630 +==1504747== +==1504747== +==1504747== FILE DESCRIPTORS: 7 open (3 std) at exit. +==1504747== Open file descriptor 115: +==1504747== +==1504747== +==1504747== Open file descriptor 112: +==1504747== +==1504747== +==1504747== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayBranch_valgrind.txt +==1504747== +==1504747== +==1504747== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504747== +==1504747== +==1504747== +==1504747== HEAP SUMMARY: +==1504747== in use at exit: 24 bytes in 2 blocks +==1504747== total heap usage: 7,119 allocs, 7,117 frees, 1,012,041 bytes allocated +==1504747== +==1504747== LEAK SUMMARY: +==1504747== definitely lost: 0 bytes in 0 blocks +==1504747== indirectly lost: 0 bytes in 0 blocks +==1504747== possibly lost: 0 bytes in 0 blocks +==1504747== still reachable: 24 bytes in 2 blocks +==1504747== suppressed: 0 bytes in 0 blocks +==1504747== Reachable blocks (those to which a pointer was found) are not shown. +==1504747== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504747== +==1504747== For lists of detected and suppressed errors, rerun with: -s +==1504747== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-02-21_13-45-57/TestAirwayGeneration_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAirwayGeneration_valgrind.txt new file mode 100644 index 0000000000..6bd2ff15b0 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAirwayGeneration_valgrind.txt @@ -0,0 +1,36 @@ +==1504817== Memcheck, a memory error detector +==1504817== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504817== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504817== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayGeneration -malloc_debug -malloc_dump -memory_info +==1504817== Parent PID: 1488630 +==1504817== +==1504817== +==1504817== FILE DESCRIPTORS: 7 open (3 std) at exit. +==1504817== Open file descriptor 115: +==1504817== +==1504817== +==1504817== Open file descriptor 112: +==1504817== +==1504817== +==1504817== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayGeneration_valgrind.txt +==1504817== +==1504817== +==1504817== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504817== +==1504817== +==1504817== +==1504817== HEAP SUMMARY: +==1504817== in use at exit: 24 bytes in 2 blocks +==1504817== total heap usage: 7,221 allocs, 7,219 frees, 924,100 bytes allocated +==1504817== +==1504817== LEAK SUMMARY: +==1504817== definitely lost: 0 bytes in 0 blocks +==1504817== indirectly lost: 0 bytes in 0 blocks +==1504817== possibly lost: 0 bytes in 0 blocks +==1504817== still reachable: 24 bytes in 2 blocks +==1504817== suppressed: 0 bytes in 0 blocks +==1504817== Reachable blocks (those to which a pointer was found) are not shown. +==1504817== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504817== +==1504817== For lists of detected and suppressed errors, rerun with: -s +==1504817== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-02-21_13-45-57/TestAirwayGenerator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAirwayGenerator_valgrind.txt new file mode 100644 index 0000000000..4bef27e442 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAirwayGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==1504832== Memcheck, a memory error detector +==1504832== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504832== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504832== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayGenerator -malloc_debug -malloc_dump -memory_info +==1504832== Parent PID: 1488630 +==1504832== +==1504832== +==1504832== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504832== Open file descriptor 12: +==1504832== at 0x6BD307D: pipe (pipe.c:29) +==1504832== by 0x1041407D: ??? +==1504832== by 0xB7394CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504832== by 0x5ED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504832== by 0x5E71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504832== by 0x4B42D38: PetscInitialize (pinit.c:924) +==1504832== by 0x4A18153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504832== by 0x4A181A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504832== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504832== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504832== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504832== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504832== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504832== by 0x111D35: main (TestAirwayGenerator.cpp:19) +==1504832== +==1504832== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504832== at 0x6BD7A1C: __open_nocancel (open64_nocancel.c:39) +==1504832== by 0x6B5BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504832== by 0x5DCC822: ??? +==1504832== by 0x5DCC96F: ??? +==1504832== by 0xB7DE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504832== by 0xB7DE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504832== by 0xB794922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504832== by 0xB7392DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504832== by 0x5ED8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504832== by 0x5E71D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504832== by 0x4B42D38: PetscInitialize (pinit.c:924) +==1504832== by 0x4A18153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504832== by 0x4A181A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504832== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504832== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504832== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504832== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504832== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504832== by 0x111D35: main (TestAirwayGenerator.cpp:19) +==1504832== +==1504832== Open file descriptor 115: +==1504832== +==1504832== +==1504832== Open file descriptor 112: +==1504832== +==1504832== +==1504832== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayGenerator_valgrind.txt +==1504832== +==1504832== +==1504832== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504832== +==1504832== +==1504832== +==1504832== HEAP SUMMARY: +==1504832== in use at exit: 995,553 bytes in 13,913 blocks +==1504832== total heap usage: 639,743 allocs, 625,830 frees, 2,020,121,701 bytes allocated +==1504832== +==1504832== LEAK SUMMARY: +==1504832== definitely lost: 0 bytes in 0 blocks +==1504832== indirectly lost: 0 bytes in 0 blocks +==1504832== possibly lost: 0 bytes in 0 blocks +==1504832== still reachable: 24 bytes in 2 blocks +==1504832== suppressed: 995,529 bytes in 13,911 blocks +==1504832== Reachable blocks (those to which a pointer was found) are not shown. +==1504832== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504832== +==1504832== For lists of detected and suppressed errors, rerun with: -s +==1504832== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestAirwayPropertiesCalculator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAirwayPropertiesCalculator_valgrind.txt new file mode 100644 index 0000000000..6594b3deab --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAirwayPropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==1504748== Memcheck, a memory error detector +==1504748== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504748== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504748== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayPropertiesCalculator -malloc_debug -malloc_dump -memory_info +==1504748== Parent PID: 1488630 +==1504748== +==1504748== +==1504748== FILE DESCRIPTORS: 7 open (3 std) at exit. +==1504748== Open file descriptor 115: +==1504748== +==1504748== +==1504748== Open file descriptor 112: +==1504748== +==1504748== +==1504748== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayPropertiesCalculator_valgrind.txt +==1504748== +==1504748== +==1504748== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504748== +==1504748== +==1504748== +==1504748== HEAP SUMMARY: +==1504748== in use at exit: 24 bytes in 2 blocks +==1504748== total heap usage: 6,940,913 allocs, 6,940,911 frees, 279,811,068 bytes allocated +==1504748== +==1504748== LEAK SUMMARY: +==1504748== definitely lost: 0 bytes in 0 blocks +==1504748== indirectly lost: 0 bytes in 0 blocks +==1504748== possibly lost: 0 bytes in 0 blocks +==1504748== still reachable: 24 bytes in 2 blocks +==1504748== suppressed: 0 bytes in 0 blocks +==1504748== Reachable blocks (those to which a pointer was found) are not shown. +==1504748== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504748== +==1504748== For lists of detected and suppressed errors, rerun with: -s +==1504748== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-02-21_13-45-57/TestAirwayRemesher_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAirwayRemesher_valgrind.txt new file mode 100644 index 0000000000..627d8e6c0a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAirwayRemesher_valgrind.txt @@ -0,0 +1,73 @@ +==1504833== Memcheck, a memory error detector +==1504833== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504833== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504833== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayRemesher -malloc_debug -malloc_dump -memory_info +==1504833== Parent PID: 1488630 +==1504833== +==1504833== +==1504833== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504833== Open file descriptor 12: +==1504833== at 0x7E9907D: pipe (pipe.c:29) +==1504833== by 0x1041407D: ??? +==1504833== by 0xBC3C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504833== by 0x77A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504833== by 0x773AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504833== by 0x640BD38: PetscInitialize (pinit.c:924) +==1504833== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504833== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504833== by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504833== by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504833== by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504833== by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504833== by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504833== by 0x114955: main (TestAirwayRemesher.cpp:18) +==1504833== +==1504833== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504833== at 0x7E9DA1C: __open_nocancel (open64_nocancel.c:39) +==1504833== by 0x7E21BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504833== by 0x7695822: ??? +==1504833== by 0x769596F: ??? +==1504833== by 0xBCE16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504833== by 0xBCE1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504833== by 0xBC97922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504833== by 0xBC3C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504833== by 0x77A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504833== by 0x773AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504833== by 0x640BD38: PetscInitialize (pinit.c:924) +==1504833== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504833== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504833== by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504833== by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504833== by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504833== by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504833== by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504833== by 0x114955: main (TestAirwayRemesher.cpp:18) +==1504833== +==1504833== Open file descriptor 115: +==1504833== +==1504833== +==1504833== Open file descriptor 112: +==1504833== +==1504833== +==1504833== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayRemesher_valgrind.txt +==1504833== +==1504833== +==1504833== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504833== +==1504833== +==1504833== +==1504833== HEAP SUMMARY: +==1504833== in use at exit: 995,494 bytes in 13,909 blocks +==1504833== total heap usage: 11,609,566 allocs, 11,595,657 frees, 2,030,587,357 bytes allocated +==1504833== +==1504833== LEAK SUMMARY: +==1504833== definitely lost: 0 bytes in 0 blocks +==1504833== indirectly lost: 0 bytes in 0 blocks +==1504833== possibly lost: 0 bytes in 0 blocks +==1504833== still reachable: 24 bytes in 2 blocks +==1504833== suppressed: 995,470 bytes in 13,907 blocks +==1504833== Reachable blocks (those to which a pointer was found) are not shown. +==1504833== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504833== +==1504833== For lists of detected and suppressed errors, rerun with: -s +==1504833== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2024-02-21_13-45-57/TestAirwayTreeWalker_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAirwayTreeWalker_valgrind.txt new file mode 100644 index 0000000000..01364b3dee --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAirwayTreeWalker_valgrind.txt @@ -0,0 +1,36 @@ +==1504750== Memcheck, a memory error detector +==1504750== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504750== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504750== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayTreeWalker -malloc_debug -malloc_dump -memory_info +==1504750== Parent PID: 1488630 +==1504750== +==1504750== +==1504750== FILE DESCRIPTORS: 7 open (3 std) at exit. +==1504750== Open file descriptor 115: +==1504750== +==1504750== +==1504750== Open file descriptor 112: +==1504750== +==1504750== +==1504750== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayTreeWalker_valgrind.txt +==1504750== +==1504750== +==1504750== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504750== +==1504750== +==1504750== +==1504750== HEAP SUMMARY: +==1504750== in use at exit: 24 bytes in 2 blocks +==1504750== total heap usage: 7,004 allocs, 7,002 frees, 1,002,772 bytes allocated +==1504750== +==1504750== LEAK SUMMARY: +==1504750== definitely lost: 0 bytes in 0 blocks +==1504750== indirectly lost: 0 bytes in 0 blocks +==1504750== possibly lost: 0 bytes in 0 blocks +==1504750== still reachable: 24 bytes in 2 blocks +==1504750== suppressed: 0 bytes in 0 blocks +==1504750== Reachable blocks (those to which a pointer was found) are not shown. +==1504750== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504750== +==1504750== For lists of detected and suppressed errors, rerun with: -s +==1504750== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-02-21_13-45-57/TestAirwayWallModels_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAirwayWallModels_valgrind.txt new file mode 100644 index 0000000000..c8ffc171fb --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAirwayWallModels_valgrind.txt @@ -0,0 +1,36 @@ +==1504905== Memcheck, a memory error detector +==1504905== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504905== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504905== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayWallModels -malloc_debug -malloc_dump -memory_info +==1504905== Parent PID: 1488630 +==1504905== +==1504905== +==1504905== FILE DESCRIPTORS: 7 open (3 std) at exit. +==1504905== Open file descriptor 115: +==1504905== +==1504905== +==1504905== Open file descriptor 112: +==1504905== +==1504905== +==1504905== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayWallModels_valgrind.txt +==1504905== +==1504905== +==1504905== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504905== +==1504905== +==1504905== +==1504905== HEAP SUMMARY: +==1504905== in use at exit: 24 bytes in 2 blocks +==1504905== total heap usage: 7,064 allocs, 7,062 frees, 1,005,189 bytes allocated +==1504905== +==1504905== LEAK SUMMARY: +==1504905== definitely lost: 0 bytes in 0 blocks +==1504905== indirectly lost: 0 bytes in 0 blocks +==1504905== possibly lost: 0 bytes in 0 blocks +==1504905== still reachable: 24 bytes in 2 blocks +==1504905== suppressed: 0 bytes in 0 blocks +==1504905== Reachable blocks (those to which a pointer was found) are not shown. +==1504905== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504905== +==1504905== For lists of detected and suppressed errors, rerun with: -s +==1504905== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-02-21_13-45-57/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt new file mode 100644 index 0000000000..d75510db17 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==1490100== Memcheck, a memory error detector +==1490100== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490100== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490100== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==1490100== Parent PID: 1488630 +==1490100== +==1490100== +==1490100== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490100== Open file descriptor 12: +==1490100== at 0xE69807D: pipe (pipe.c:29) +==1490100== by 0x18A1D07D: ??? +==1490100== by 0x12FC34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490100== by 0xE2E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490100== by 0xE27ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490100== by 0xCF75D38: PetscInitialize (pinit.c:924) +==1490100== by 0xCDE5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490100== by 0xCDE51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490100== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490100== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490100== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490100== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490100== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490100== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) +==1490100== +==1490100== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490100== at 0xE69CA1C: __open_nocancel (open64_nocancel.c:39) +==1490100== by 0xE620BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490100== by 0xCE19822: ??? +==1490100== by 0xCE1996F: ??? +==1490100== by 0x130686DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490100== by 0x13068938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490100== by 0x1301E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490100== by 0x12FC32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490100== by 0xE2E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490100== by 0xE27ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490100== by 0xCF75D38: PetscInitialize (pinit.c:924) +==1490100== by 0xCDE5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490100== by 0xCDE51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490100== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490100== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490100== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490100== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490100== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490100== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) +==1490100== +==1490100== Open file descriptor 115: +==1490100== +==1490100== +==1490100== Open file descriptor 112: +==1490100== +==1490100== +==1490100== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt +==1490100== +==1490100== +==1490100== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490100== +==1490100== +==1490100== +==1490100== HEAP SUMMARY: +==1490100== in use at exit: 995,553 bytes in 13,913 blocks +==1490100== total heap usage: 178,235 allocs, 164,322 frees, 1,582,671,186 bytes allocated +==1490100== +==1490100== LEAK SUMMARY: +==1490100== definitely lost: 0 bytes in 0 blocks +==1490100== indirectly lost: 0 bytes in 0 blocks +==1490100== possibly lost: 0 bytes in 0 blocks +==1490100== still reachable: 24 bytes in 2 blocks +==1490100== suppressed: 995,529 bytes in 13,911 blocks +==1490100== Reachable blocks (those to which a pointer was found) are not shown. +==1490100== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490100== +==1490100== For lists of detected and suppressed errors, rerun with: -s +==1490100== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestArchiveCell_valgrind.txt b/log-files/2024-02-21_13-45-57/TestArchiveCell_valgrind.txt new file mode 100644 index 0000000000..e551132cd7 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestArchiveCell_valgrind.txt @@ -0,0 +1,73 @@ +==1489770== Memcheck, a memory error detector +==1489770== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489770== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489770== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestArchiveCell -malloc_debug -malloc_dump -memory_info +==1489770== Parent PID: 1488630 +==1489770== +==1489770== +==1489770== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489770== Open file descriptor 12: +==1489770== at 0xE45307D: pipe (pipe.c:29) +==1489770== by 0x18A1D07D: ??? +==1489770== by 0x12F724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489770== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489770== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489770== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1489770== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489770== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489770== by 0x1A4DB1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489770== by 0x19F1FF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489770== by 0x1A2140: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489770== by 0x1A203C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489770== by 0x1A264F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489770== by 0x19D9F5: main (TestArchiveCell.cpp:18) +==1489770== +==1489770== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489770== at 0xE457A1C: __open_nocancel (open64_nocancel.c:39) +==1489770== by 0xE3DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489770== by 0xCBD4822: ??? +==1489770== by 0xCBD496F: ??? +==1489770== by 0x130176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489770== by 0x13017938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489770== by 0x12FCD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489770== by 0x12F722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489770== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489770== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489770== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1489770== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489770== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489770== by 0x1A4DB1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489770== by 0x19F1FF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489770== by 0x1A2140: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489770== by 0x1A203C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489770== by 0x1A264F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489770== by 0x19D9F5: main (TestArchiveCell.cpp:18) +==1489770== +==1489770== Open file descriptor 115: +==1489770== +==1489770== +==1489770== Open file descriptor 112: +==1489770== +==1489770== +==1489770== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiveCell_valgrind.txt +==1489770== +==1489770== +==1489770== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489770== +==1489770== +==1489770== +==1489770== HEAP SUMMARY: +==1489770== in use at exit: 995,649 bytes in 13,915 blocks +==1489770== total heap usage: 66,055 allocs, 52,140 frees, 1,572,039,947 bytes allocated +==1489770== +==1489770== LEAK SUMMARY: +==1489770== definitely lost: 0 bytes in 0 blocks +==1489770== indirectly lost: 0 bytes in 0 blocks +==1489770== possibly lost: 0 bytes in 0 blocks +==1489770== still reachable: 120 bytes in 4 blocks +==1489770== suppressed: 995,529 bytes in 13,911 blocks +==1489770== Reachable blocks (those to which a pointer was found) are not shown. +==1489770== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489770== +==1489770== For lists of detected and suppressed errors, rerun with: -s +==1489770== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestArchiveFormat_valgrind.txt b/log-files/2024-02-21_13-45-57/TestArchiveFormat_valgrind.txt new file mode 100644 index 0000000000..9597e8d57f --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestArchiveFormat_valgrind.txt @@ -0,0 +1,73 @@ +==1504386== Memcheck, a memory error detector +==1504386== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504386== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504386== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestArchiveFormat -malloc_debug -malloc_dump -memory_info +==1504386== Parent PID: 1488630 +==1504386== +==1504386== +==1504386== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504386== Open file descriptor 12: +==1504386== at 0x1192307D: pipe (pipe.c:29) +==1504386== by 0x1A6DF07D: ??? +==1504386== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504386== by 0x1122B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504386== by 0x111C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504386== by 0xFEBBD38: PetscInitialize (pinit.c:924) +==1504386== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504386== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504386== by 0x1C0D5D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504386== by 0x1BBA9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504386== by 0x1BE6BA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504386== by 0x1BE5B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504386== by 0x1BEBC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504386== by 0x1BA295: main (TestArchiveFormat.cpp:18) +==1504386== +==1504386== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504386== at 0x11927A1C: __open_nocancel (open64_nocancel.c:39) +==1504386== by 0x118ABBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504386== by 0xFD5F822: ??? +==1504386== by 0xFD5F96F: ??? +==1504386== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504386== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504386== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504386== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504386== by 0x1122B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504386== by 0x111C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504386== by 0xFEBBD38: PetscInitialize (pinit.c:924) +==1504386== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504386== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504386== by 0x1C0D5D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504386== by 0x1BBA9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504386== by 0x1BE6BA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504386== by 0x1BE5B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504386== by 0x1BEBC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504386== by 0x1BA295: main (TestArchiveFormat.cpp:18) +==1504386== +==1504386== Open file descriptor 115: +==1504386== +==1504386== +==1504386== Open file descriptor 112: +==1504386== +==1504386== +==1504386== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiveFormat_valgrind.txt +==1504386== +==1504386== +==1504386== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504386== +==1504386== +==1504386== +==1504386== HEAP SUMMARY: +==1504386== in use at exit: 995,649 bytes in 13,914 blocks +==1504386== total heap usage: 149,848 allocs, 135,934 frees, 1,578,442,705 bytes allocated +==1504386== +==1504386== LEAK SUMMARY: +==1504386== definitely lost: 0 bytes in 0 blocks +==1504386== indirectly lost: 0 bytes in 0 blocks +==1504386== possibly lost: 0 bytes in 0 blocks +==1504386== still reachable: 104 bytes in 3 blocks +==1504386== suppressed: 995,545 bytes in 13,911 blocks +==1504386== Reachable blocks (those to which a pointer was found) are not shown. +==1504386== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504386== +==1504386== For lists of detected and suppressed errors, rerun with: -s +==1504386== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestArchivingExtendedBidomain_valgrind.txt b/log-files/2024-02-21_13-45-57/TestArchivingExtendedBidomain_valgrind.txt new file mode 100644 index 0000000000..bc87783958 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestArchivingExtendedBidomain_valgrind.txt @@ -0,0 +1,73 @@ +==1505032== Memcheck, a memory error detector +==1505032== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505032== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505032== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestArchivingExtendedBidomain -malloc_debug -malloc_dump -memory_info +==1505032== Parent PID: 1488630 +==1505032== +==1505032== +==1505032== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505032== Open file descriptor 12: +==1505032== at 0xB9BC07D: pipe (pipe.c:29) +==1505032== by 0x13F9607D: ??? +==1505032== by 0xF7514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505032== by 0xB2AC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505032== by 0xB245D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505032== by 0x9F3CD38: PetscInitialize (pinit.c:924) +==1505032== by 0x9DAA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505032== by 0x9DAA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505032== by 0x12EE9E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505032== by 0x129BF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505032== by 0x12CABA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505032== by 0x12C9B5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505032== by 0x12CFC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505032== by 0x1283A5: main (TestArchivingExtendedBidomain.cpp:18) +==1505032== +==1505032== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505032== at 0xB9C0A1C: __open_nocancel (open64_nocancel.c:39) +==1505032== by 0xB944BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505032== by 0x9DDE822: ??? +==1505032== by 0x9DDE96F: ??? +==1505032== by 0xF7F66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505032== by 0xF7F6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505032== by 0xF7AC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505032== by 0xF7512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505032== by 0xB2AC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505032== by 0xB245D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505032== by 0x9F3CD38: PetscInitialize (pinit.c:924) +==1505032== by 0x9DAA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505032== by 0x9DAA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505032== by 0x12EE9E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505032== by 0x129BF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505032== by 0x12CABA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505032== by 0x12C9B5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505032== by 0x12CFC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505032== by 0x1283A5: main (TestArchivingExtendedBidomain.cpp:18) +==1505032== +==1505032== Open file descriptor 115: +==1505032== +==1505032== +==1505032== Open file descriptor 112: +==1505032== +==1505032== +==1505032== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchivingExtendedBidomain_valgrind.txt +==1505032== +==1505032== +==1505032== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505032== +==1505032== +==1505032== +==1505032== HEAP SUMMARY: +==1505032== in use at exit: 995,990 bytes in 13,919 blocks +==1505032== total heap usage: 364,712 allocs, 350,793 frees, 1,673,180,226 bytes allocated +==1505032== +==1505032== LEAK SUMMARY: +==1505032== definitely lost: 0 bytes in 0 blocks +==1505032== indirectly lost: 0 bytes in 0 blocks +==1505032== possibly lost: 0 bytes in 0 blocks +==1505032== still reachable: 24 bytes in 2 blocks +==1505032== suppressed: 995,966 bytes in 13,917 blocks +==1505032== Reachable blocks (those to which a pointer was found) are not shown. +==1505032== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505032== +==1505032== For lists of detected and suppressed errors, rerun with: -s +==1505032== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 51 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestArchivingHelperClasses_valgrind.txt b/log-files/2024-02-21_13-45-57/TestArchivingHelperClasses_valgrind.txt new file mode 100644 index 0000000000..2ca1eb471b --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestArchivingHelperClasses_valgrind.txt @@ -0,0 +1,73 @@ +==1488631== Memcheck, a memory error detector +==1488631== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488631== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488631== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestArchivingHelperClasses -malloc_debug -malloc_dump -memory_info +==1488631== Parent PID: 1488630 +==1488631== +==1488631== +==1488631== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488631== Open file descriptor 12: +==1488631== at 0x4CF807D: pipe (pipe.c:29) +==1488631== by 0xAEA607D: ??? +==1488631== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488631== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488631== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488631== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488631== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488631== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488631== by 0x11F878: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488631== by 0x11ABDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488631== by 0x11D596: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488631== by 0x11D436: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488631== by 0x11DACD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488631== by 0x119005: main (TestArchivingHelperClasses.cpp:19) +==1488631== +==1488631== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488631== at 0x4CFCA1C: __open_nocancel (open64_nocancel.c:39) +==1488631== by 0x4C80BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488631== by 0x492E822: ??? +==1488631== by 0x492E96F: ??? +==1488631== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488631== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488631== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488631== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488631== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488631== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488631== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488631== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488631== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488631== by 0x11F878: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488631== by 0x11ABDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488631== by 0x11D596: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488631== by 0x11D436: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488631== by 0x11DACD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488631== by 0x119005: main (TestArchivingHelperClasses.cpp:19) +==1488631== +==1488631== Open file descriptor 115: +==1488631== +==1488631== +==1488631== Open file descriptor 112: +==1488631== +==1488631== +==1488631== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchivingHelperClasses_valgrind.txt +==1488631== +==1488631== +==1488631== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488631== +==1488631== +==1488631== +==1488631== HEAP SUMMARY: +==1488631== in use at exit: 995,073 bytes in 13,913 blocks +==1488631== total heap usage: 58,578 allocs, 44,665 frees, 1,571,524,201 bytes allocated +==1488631== +==1488631== LEAK SUMMARY: +==1488631== definitely lost: 0 bytes in 0 blocks +==1488631== indirectly lost: 0 bytes in 0 blocks +==1488631== possibly lost: 0 bytes in 0 blocks +==1488631== still reachable: 24 bytes in 2 blocks +==1488631== suppressed: 995,049 bytes in 13,911 blocks +==1488631== Reachable blocks (those to which a pointer was found) are not shown. +==1488631== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488631== +==1488631== For lists of detected and suppressed errors, rerun with: -s +==1488631== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestArchiving_valgrind.txt b/log-files/2024-02-21_13-45-57/TestArchiving_valgrind.txt new file mode 100644 index 0000000000..db1bde77ea --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestArchiving_valgrind.txt @@ -0,0 +1,73 @@ +==1488632== Memcheck, a memory error detector +==1488632== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488632== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488632== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestArchiving -malloc_debug -malloc_dump -memory_info +==1488632== Parent PID: 1488630 +==1488632== +==1488632== +==1488632== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488632== Open file descriptor 12: +==1488632== at 0x61AD07D: pipe (pipe.c:29) +==1488632== by 0xAEA607D: ??? +==1488632== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488632== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488632== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488632== by 0x4A8AD38: PetscInitialize (pinit.c:924) +==1488632== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488632== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488632== by 0x12FB25: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488632== by 0x128E5F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488632== by 0x12CB36: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488632== by 0x12CA31: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488632== by 0x12D045: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488632== by 0x127655: main (TestArchiving.cpp:18) +==1488632== +==1488632== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488632== at 0x61B1A1C: __open_nocancel (open64_nocancel.c:39) +==1488632== by 0x6135BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488632== by 0x492E822: ??? +==1488632== by 0x492E96F: ??? +==1488632== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488632== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488632== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488632== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488632== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488632== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488632== by 0x4A8AD38: PetscInitialize (pinit.c:924) +==1488632== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488632== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488632== by 0x12FB25: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488632== by 0x128E5F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488632== by 0x12CB36: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488632== by 0x12CA31: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488632== by 0x12D045: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488632== by 0x127655: main (TestArchiving.cpp:18) +==1488632== +==1488632== Open file descriptor 115: +==1488632== +==1488632== +==1488632== Open file descriptor 112: +==1488632== +==1488632== +==1488632== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiving_valgrind.txt +==1488632== +==1488632== +==1488632== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488632== +==1488632== +==1488632== +==1488632== HEAP SUMMARY: +==1488632== in use at exit: 995,073 bytes in 13,913 blocks +==1488632== total heap usage: 58,144 allocs, 44,231 frees, 1,571,424,847 bytes allocated +==1488632== +==1488632== LEAK SUMMARY: +==1488632== definitely lost: 0 bytes in 0 blocks +==1488632== indirectly lost: 0 bytes in 0 blocks +==1488632== possibly lost: 0 bytes in 0 blocks +==1488632== still reachable: 24 bytes in 2 blocks +==1488632== suppressed: 995,049 bytes in 13,911 blocks +==1488632== Reachable blocks (those to which a pointer was found) are not shown. +==1488632== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488632== +==1488632== For lists of detected and suppressed errors, rerun with: -s +==1488632== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestBackwardEulerIvpOdeSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestBackwardEulerIvpOdeSolver_valgrind.txt new file mode 100644 index 0000000000..2e0932d1dd --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestBackwardEulerIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489392== Memcheck, a memory error detector +==1489392== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489392== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489392== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestBackwardEulerIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==1489392== Parent PID: 1488630 +==1489392== +==1489392== +==1489392== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489392== Open file descriptor 12: +==1489392== at 0x503C07D: pipe (pipe.c:29) +==1489392== by 0xB1E807D: ??? +==1489392== by 0x8CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489392== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489392== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489392== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489392== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489392== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489392== by 0x125F28: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489392== by 0x120619: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489392== by 0x122DCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489392== by 0x122CCA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489392== by 0x1232DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489392== by 0x11DEE5: main (TestBackwardEulerIvpOdeSolver.cpp:18) +==1489392== +==1489392== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489392== at 0x5040A1C: __open_nocancel (open64_nocancel.c:39) +==1489392== by 0x4FC4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489392== by 0x4B71822: ??? +==1489392== by 0x4B7196F: ??? +==1489392== by 0x8D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489392== by 0x8D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489392== by 0x8D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489392== by 0x8CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489392== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489392== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489392== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489392== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489392== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489392== by 0x125F28: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489392== by 0x120619: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489392== by 0x122DCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489392== by 0x122CCA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489392== by 0x1232DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489392== by 0x11DEE5: main (TestBackwardEulerIvpOdeSolver.cpp:18) +==1489392== +==1489392== Open file descriptor 115: +==1489392== +==1489392== +==1489392== Open file descriptor 112: +==1489392== +==1489392== +==1489392== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBackwardEulerIvpOdeSolver_valgrind.txt +==1489392== +==1489392== +==1489392== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489392== +==1489392== +==1489392== +==1489392== HEAP SUMMARY: +==1489392== in use at exit: 995,137 bytes in 13,913 blocks +==1489392== total heap usage: 398,711 allocs, 384,798 frees, 1,577,115,057 bytes allocated +==1489392== +==1489392== LEAK SUMMARY: +==1489392== definitely lost: 0 bytes in 0 blocks +==1489392== indirectly lost: 0 bytes in 0 blocks +==1489392== possibly lost: 0 bytes in 0 blocks +==1489392== still reachable: 24 bytes in 2 blocks +==1489392== suppressed: 995,113 bytes in 13,911 blocks +==1489392== Reachable blocks (those to which a pointer was found) are not shown. +==1489392== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489392== +==1489392== For lists of detected and suppressed errors, rerun with: -s +==1489392== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt b/log-files/2024-02-21_13-45-57/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt new file mode 100644 index 0000000000..e8a9e67679 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt @@ -0,0 +1,73 @@ +==1504956== Memcheck, a memory error detector +==1504956== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504956== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504956== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBenchmarkPreconditionersForMeshIndependence -malloc_debug -malloc_dump -memory_info +==1504956== Parent PID: 1488630 +==1504956== +==1504956== +==1504956== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504956== Open file descriptor 12: +==1504956== at 0xB95F07D: pipe (pipe.c:29) +==1504956== by 0x13F9607D: ??? +==1504956== by 0xF7514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504956== by 0xB166418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504956== by 0xB0FFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504956== by 0x9DD0D38: PetscInitialize (pinit.c:924) +==1504956== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504956== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504956== by 0x11D9C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504956== by 0x1189AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504956== by 0x11B52E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504956== by 0x11B3CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504956== by 0x11BA65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504956== by 0x116DD5: main (TestBenchmarkPreconditionersForMeshIndependence.cpp:19) +==1504956== +==1504956== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504956== at 0xB963A1C: __open_nocancel (open64_nocancel.c:39) +==1504956== by 0xB8E7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504956== by 0xB05A822: ??? +==1504956== by 0xB05A96F: ??? +==1504956== by 0xF7F66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504956== by 0xF7F6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504956== by 0xF7AC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504956== by 0xF7512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504956== by 0xB166418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504956== by 0xB0FFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504956== by 0x9DD0D38: PetscInitialize (pinit.c:924) +==1504956== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504956== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504956== by 0x11D9C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504956== by 0x1189AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504956== by 0x11B52E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504956== by 0x11B3CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504956== by 0x11BA65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504956== by 0x116DD5: main (TestBenchmarkPreconditionersForMeshIndependence.cpp:19) +==1504956== +==1504956== Open file descriptor 115: +==1504956== +==1504956== +==1504956== Open file descriptor 112: +==1504956== +==1504956== +==1504956== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt +==1504956== +==1504956== +==1504956== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504956== +==1504956== +==1504956== +==1504956== HEAP SUMMARY: +==1504956== in use at exit: 996,006 bytes in 13,920 blocks +==1504956== total heap usage: 478,641 allocs, 464,721 frees, 1,775,332,404 bytes allocated +==1504956== +==1504956== LEAK SUMMARY: +==1504956== definitely lost: 0 bytes in 0 blocks +==1504956== indirectly lost: 0 bytes in 0 blocks +==1504956== possibly lost: 0 bytes in 0 blocks +==1504956== still reachable: 40 bytes in 3 blocks +==1504956== suppressed: 995,966 bytes in 13,917 blocks +==1504956== Reachable blocks (those to which a pointer was found) are not shown. +==1504956== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504956== +==1504956== For lists of detected and suppressed errors, rerun with: -s +==1504956== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 51 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestBidomainDistributedMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestBidomainDistributedMesh_valgrind.txt new file mode 100644 index 0000000000..9c8ed223f1 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestBidomainDistributedMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1504961== Memcheck, a memory error detector +==1504961== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504961== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504961== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainDistributedMesh -malloc_debug -malloc_dump -memory_info +==1504961== Parent PID: 1488630 +==1504961== +==1504961== +==1504961== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504961== Open file descriptor 12: +==1504961== at 0xB87807D: pipe (pipe.c:29) +==1504961== by 0x13F9607D: ??? +==1504961== by 0xF7514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504961== by 0xB166418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504961== by 0xB0FFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504961== by 0x9DD0D38: PetscInitialize (pinit.c:924) +==1504961== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504961== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504961== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504961== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504961== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504961== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504961== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504961== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) +==1504961== +==1504961== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504961== at 0xB87CA1C: __open_nocancel (open64_nocancel.c:39) +==1504961== by 0xB800BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504961== by 0xB05A822: ??? +==1504961== by 0xB05A96F: ??? +==1504961== by 0xF7F66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504961== by 0xF7F6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504961== by 0xF7AC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504961== by 0xF7512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504961== by 0xB166418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504961== by 0xB0FFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504961== by 0x9DD0D38: PetscInitialize (pinit.c:924) +==1504961== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504961== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504961== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504961== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504961== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504961== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504961== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504961== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) +==1504961== +==1504961== Open file descriptor 115: +==1504961== +==1504961== +==1504961== Open file descriptor 112: +==1504961== +==1504961== +==1504961== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainDistributedMesh_valgrind.txt +==1504961== +==1504961== +==1504961== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504961== +==1504961== +==1504961== +==1504961== HEAP SUMMARY: +==1504961== in use at exit: 996,049 bytes in 13,923 blocks +==1504961== total heap usage: 440,805 allocs, 426,882 frees, 1,670,458,664 bytes allocated +==1504961== +==1504961== LEAK SUMMARY: +==1504961== definitely lost: 0 bytes in 0 blocks +==1504961== indirectly lost: 0 bytes in 0 blocks +==1504961== possibly lost: 0 bytes in 0 blocks +==1504961== still reachable: 24 bytes in 2 blocks +==1504961== suppressed: 996,025 bytes in 13,921 blocks +==1504961== Reachable blocks (those to which a pointer was found) are not shown. +==1504961== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504961== +==1504961== For lists of detected and suppressed errors, rerun with: -s +==1504961== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 55 from 38) diff --git a/log-files/2024-02-21_13-45-57/TestBidomainProblem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestBidomainProblem_valgrind.txt new file mode 100644 index 0000000000..68209f06fe --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==1505003== Memcheck, a memory error detector +==1505003== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505003== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505003== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainProblem -malloc_debug -malloc_dump -memory_info +==1505003== Parent PID: 1488630 +==1505003== +==1505003== +==1505003== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505003== Open file descriptor 12: +==1505003== at 0xBD5B07D: pipe (pipe.c:29) +==1505003== by 0x13F9607D: ??? +==1505003== by 0xF7514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505003== by 0xB649418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505003== by 0xB5E2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505003== by 0xA2D9D38: PetscInitialize (pinit.c:924) +==1505003== by 0xA147153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505003== by 0xA1471A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505003== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505003== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505003== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505003== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505003== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505003== by 0x138285: main (TestBidomainProblem.cpp:19) +==1505003== +==1505003== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505003== at 0xBD5FA1C: __open_nocancel (open64_nocancel.c:39) +==1505003== by 0xBCE3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505003== by 0xA17B822: ??? +==1505003== by 0xA17B96F: ??? +==1505003== by 0xF7F66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505003== by 0xF7F6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505003== by 0xF7AC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505003== by 0xF7512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505003== by 0xB649418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505003== by 0xB5E2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505003== by 0xA2D9D38: PetscInitialize (pinit.c:924) +==1505003== by 0xA147153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505003== by 0xA1471A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505003== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505003== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505003== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505003== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505003== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505003== by 0x138285: main (TestBidomainProblem.cpp:19) +==1505003== +==1505003== Open file descriptor 115: +==1505003== +==1505003== +==1505003== Open file descriptor 112: +==1505003== +==1505003== +==1505003== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainProblem_valgrind.txt +==1505003== +==1505003== +==1505003== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505003== +==1505003== +==1505003== +==1505003== HEAP SUMMARY: +==1505003== in use at exit: 996,049 bytes in 13,923 blocks +==1505003== total heap usage: 599,125 allocs, 585,202 frees, 1,782,742,664 bytes allocated +==1505003== +==1505003== LEAK SUMMARY: +==1505003== definitely lost: 0 bytes in 0 blocks +==1505003== indirectly lost: 0 bytes in 0 blocks +==1505003== possibly lost: 0 bytes in 0 blocks +==1505003== still reachable: 24 bytes in 2 blocks +==1505003== suppressed: 996,025 bytes in 13,921 blocks +==1505003== Reachable blocks (those to which a pointer was found) are not shown. +==1505003== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505003== +==1505003== For lists of detected and suppressed errors, rerun with: -s +==1505003== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 103 from 38) diff --git a/log-files/2024-02-21_13-45-57/TestBidomainTissue_valgrind.txt b/log-files/2024-02-21_13-45-57/TestBidomainTissue_valgrind.txt new file mode 100644 index 0000000000..fbfc018674 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestBidomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==1504992== Memcheck, a memory error detector +==1504992== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504992== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504992== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainTissue -malloc_debug -malloc_dump -memory_info +==1504992== Parent PID: 1488630 +==1504992== +==1504992== +==1504992== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504992== Open file descriptor 12: +==1504992== at 0xB81207D: pipe (pipe.c:29) +==1504992== by 0x13F9607D: ??? +==1504992== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504992== by 0xBB8F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504992== by 0xBB28D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504992== by 0x9EC7D38: PetscInitialize (pinit.c:924) +==1504992== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504992== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504992== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504992== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504992== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504992== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504992== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504992== by 0x1326C5: main (TestBidomainTissue.cpp:18) +==1504992== +==1504992== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504992== at 0xB816A1C: __open_nocancel (open64_nocancel.c:39) +==1504992== by 0xB79ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504992== by 0x9D6B822: ??? +==1504992== by 0x9D6B96F: ??? +==1504992== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504992== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504992== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504992== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504992== by 0xBB8F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504992== by 0xBB28D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504992== by 0x9EC7D38: PetscInitialize (pinit.c:924) +==1504992== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504992== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504992== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504992== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504992== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504992== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504992== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504992== by 0x1326C5: main (TestBidomainTissue.cpp:18) +==1504992== +==1504992== Open file descriptor 115: +==1504992== +==1504992== +==1504992== Open file descriptor 112: +==1504992== +==1504992== +==1504992== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainTissue_valgrind.txt +==1504992== +==1504992== +==1504992== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504992== +==1504992== +==1504992== +==1504992== HEAP SUMMARY: +==1504992== in use at exit: 995,569 bytes in 13,913 blocks +==1504992== total heap usage: 204,554 allocs, 190,641 frees, 1,614,267,477 bytes allocated +==1504992== +==1504992== LEAK SUMMARY: +==1504992== definitely lost: 0 bytes in 0 blocks +==1504992== indirectly lost: 0 bytes in 0 blocks +==1504992== possibly lost: 0 bytes in 0 blocks +==1504992== still reachable: 24 bytes in 2 blocks +==1504992== suppressed: 995,545 bytes in 13,911 blocks +==1504992== Reachable blocks (those to which a pointer was found) are not shown. +==1504992== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504992== +==1504992== For lists of detected and suppressed errors, rerun with: -s +==1504992== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestBidomainWithBathProblem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestBidomainWithBathProblem_valgrind.txt new file mode 100644 index 0000000000..faa6a17e1c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestBidomainWithBathProblem_valgrind.txt @@ -0,0 +1,73 @@ +==1505004== Memcheck, a memory error detector +==1505004== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505004== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505004== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainWithBathProblem -malloc_debug -malloc_dump -memory_info +==1505004== Parent PID: 1488630 +==1505004== +==1505004== +==1505004== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505004== Open file descriptor 12: +==1505004== at 0xA8D607D: pipe (pipe.c:29) +==1505004== by 0x13F9607D: ??? +==1505004== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505004== by 0xBFD1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505004== by 0xBF6AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505004== by 0xAC61D38: PetscInitialize (pinit.c:924) +==1505004== by 0xA0D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505004== by 0xA0D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505004== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505004== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505004== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505004== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505004== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505004== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) +==1505004== +==1505004== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505004== at 0xA8DAA1C: __open_nocancel (open64_nocancel.c:39) +==1505004== by 0xA85EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505004== by 0xA108822: ??? +==1505004== by 0xA10896F: ??? +==1505004== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505004== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505004== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505004== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505004== by 0xBFD1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505004== by 0xBF6AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505004== by 0xAC61D38: PetscInitialize (pinit.c:924) +==1505004== by 0xA0D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505004== by 0xA0D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505004== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505004== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505004== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505004== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505004== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505004== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) +==1505004== +==1505004== Open file descriptor 115: +==1505004== +==1505004== +==1505004== Open file descriptor 112: +==1505004== +==1505004== +==1505004== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainWithBathProblem_valgrind.txt +==1505004== +==1505004== +==1505004== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505004== +==1505004== +==1505004== +==1505004== HEAP SUMMARY: +==1505004== in use at exit: 995,990 bytes in 13,919 blocks +==1505004== total heap usage: 1,410,110 allocs, 1,396,191 frees, 2,221,575,984 bytes allocated +==1505004== +==1505004== LEAK SUMMARY: +==1505004== definitely lost: 0 bytes in 0 blocks +==1505004== indirectly lost: 0 bytes in 0 blocks +==1505004== possibly lost: 0 bytes in 0 blocks +==1505004== still reachable: 24 bytes in 2 blocks +==1505004== suppressed: 995,966 bytes in 13,917 blocks +==1505004== Reachable blocks (those to which a pointer was found) are not shown. +==1505004== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505004== +==1505004== For lists of detected and suppressed errors, rerun with: -s +==1505004== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 69 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestBidomainWithSvi_valgrind.txt b/log-files/2024-02-21_13-45-57/TestBidomainWithSvi_valgrind.txt new file mode 100644 index 0000000000..7b4b28627d --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestBidomainWithSvi_valgrind.txt @@ -0,0 +1,73 @@ +==1505031== Memcheck, a memory error detector +==1505031== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505031== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505031== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainWithSvi -malloc_debug -malloc_dump -memory_info +==1505031== Parent PID: 1488630 +==1505031== +==1505031== +==1505031== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505031== Open file descriptor 12: +==1505031== at 0xA45207D: pipe (pipe.c:29) +==1505031== by 0x13F9607D: ??? +==1505031== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505031== by 0xBB4B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505031== by 0xBAE4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505031== by 0xA7DBD38: PetscInitialize (pinit.c:924) +==1505031== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505031== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505031== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505031== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505031== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505031== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505031== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505031== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) +==1505031== +==1505031== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505031== at 0xA456A1C: __open_nocancel (open64_nocancel.c:39) +==1505031== by 0xA3DABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505031== by 0x9D6B822: ??? +==1505031== by 0x9D6B96F: ??? +==1505031== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505031== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505031== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505031== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505031== by 0xBB4B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505031== by 0xBAE4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505031== by 0xA7DBD38: PetscInitialize (pinit.c:924) +==1505031== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505031== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505031== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505031== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505031== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505031== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505031== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505031== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) +==1505031== +==1505031== Open file descriptor 115: +==1505031== +==1505031== +==1505031== Open file descriptor 112: +==1505031== +==1505031== +==1505031== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainWithSvi_valgrind.txt +==1505031== +==1505031== +==1505031== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505031== +==1505031== +==1505031== +==1505031== HEAP SUMMARY: +==1505031== in use at exit: 995,990 bytes in 13,919 blocks +==1505031== total heap usage: 3,552,706 allocs, 3,538,787 frees, 2,279,714,554 bytes allocated +==1505031== +==1505031== LEAK SUMMARY: +==1505031== definitely lost: 0 bytes in 0 blocks +==1505031== indirectly lost: 0 bytes in 0 blocks +==1505031== possibly lost: 0 bytes in 0 blocks +==1505031== still reachable: 24 bytes in 2 blocks +==1505031== suppressed: 995,966 bytes in 13,917 blocks +==1505031== Reachable blocks (those to which a pointer was found) are not shown. +==1505031== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505031== +==1505031== For lists of detected and suppressed errors, rerun with: -s +==1505031== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 72 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestBoundaryConditionsContainer_valgrind.txt b/log-files/2024-02-21_13-45-57/TestBoundaryConditionsContainer_valgrind.txt new file mode 100644 index 0000000000..342c6bba36 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestBoundaryConditionsContainer_valgrind.txt @@ -0,0 +1,73 @@ +==1489603== Memcheck, a memory error detector +==1489603== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489603== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489603== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestBoundaryConditionsContainer -malloc_debug -malloc_dump -memory_info +==1489603== Parent PID: 1488630 +==1489603== +==1489603== +==1489603== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489603== Open file descriptor 12: +==1489603== at 0x80B207D: pipe (pipe.c:29) +==1489603== by 0x1014507D: ??? +==1489603== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489603== by 0x86D5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489603== by 0x866ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489603== by 0x6781D38: PetscInitialize (pinit.c:924) +==1489603== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489603== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489603== by 0x13D842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489603== by 0x13868F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489603== by 0x13B1AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489603== by 0x13B0A6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489603== by 0x13B6B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489603== by 0x136E85: main (TestBoundaryConditionsContainer.cpp:18) +==1489603== +==1489603== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489603== at 0x80B6A1C: __open_nocancel (open64_nocancel.c:39) +==1489603== by 0x803ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489603== by 0x6625822: ??? +==1489603== by 0x662596F: ??? +==1489603== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489603== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489603== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489603== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489603== by 0x86D5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489603== by 0x866ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489603== by 0x6781D38: PetscInitialize (pinit.c:924) +==1489603== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489603== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489603== by 0x13D842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489603== by 0x13868F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489603== by 0x13B1AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489603== by 0x13B0A6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489603== by 0x13B6B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489603== by 0x136E85: main (TestBoundaryConditionsContainer.cpp:18) +==1489603== +==1489603== Open file descriptor 115: +==1489603== +==1489603== +==1489603== Open file descriptor 112: +==1489603== +==1489603== +==1489603== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBoundaryConditionsContainer_valgrind.txt +==1489603== +==1489603== +==1489603== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489603== +==1489603== +==1489603== +==1489603== HEAP SUMMARY: +==1489603== in use at exit: 995,489 bytes in 13,913 blocks +==1489603== total heap usage: 66,794 allocs, 52,881 frees, 1,573,457,402 bytes allocated +==1489603== +==1489603== LEAK SUMMARY: +==1489603== definitely lost: 0 bytes in 0 blocks +==1489603== indirectly lost: 0 bytes in 0 blocks +==1489603== possibly lost: 0 bytes in 0 blocks +==1489603== still reachable: 24 bytes in 2 blocks +==1489603== suppressed: 995,465 bytes in 13,911 blocks +==1489603== Reachable blocks (those to which a pointer was found) are not shown. +==1489603== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489603== +==1489603== For lists of detected and suppressed errors, rerun with: -s +==1489603== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestBuskeForces_valgrind.txt b/log-files/2024-02-21_13-45-57/TestBuskeForces_valgrind.txt new file mode 100644 index 0000000000..6366f88021 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestBuskeForces_valgrind.txt @@ -0,0 +1,73 @@ +==1490166== Memcheck, a memory error detector +==1490166== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490166== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490166== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestBuskeForces -malloc_debug -malloc_dump -memory_info +==1490166== Parent PID: 1488630 +==1490166== +==1490166== +==1490166== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490166== Open file descriptor 12: +==1490166== at 0xEC9507D: pipe (pipe.c:29) +==1490166== by 0x18A1D07D: ??? +==1490166== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490166== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490166== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490166== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490166== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490166== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490166== by 0x1373C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490166== by 0x1302A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490166== by 0x132EDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490166== by 0x132DD7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490166== by 0x1333EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490166== by 0x12EAA5: main (TestBuskeForces.cpp:18) +==1490166== +==1490166== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490166== at 0xEC99A1C: __open_nocancel (open64_nocancel.c:39) +==1490166== by 0xEC1DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490166== by 0xE49F822: ??? +==1490166== by 0xE49F96F: ??? +==1490166== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490166== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490166== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490166== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490166== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490166== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490166== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490166== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490166== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490166== by 0x1373C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490166== by 0x1302A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490166== by 0x132EDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490166== by 0x132DD7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490166== by 0x1333EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490166== by 0x12EAA5: main (TestBuskeForces.cpp:18) +==1490166== +==1490166== Open file descriptor 115: +==1490166== +==1490166== +==1490166== Open file descriptor 112: +==1490166== +==1490166== +==1490166== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBuskeForces_valgrind.txt +==1490166== +==1490166== +==1490166== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490166== +==1490166== +==1490166== +==1490166== HEAP SUMMARY: +==1490166== in use at exit: 995,585 bytes in 13,914 blocks +==1490166== total heap usage: 68,165 allocs, 54,251 frees, 1,572,883,216 bytes allocated +==1490166== +==1490166== LEAK SUMMARY: +==1490166== definitely lost: 0 bytes in 0 blocks +==1490166== indirectly lost: 0 bytes in 0 blocks +==1490166== possibly lost: 0 bytes in 0 blocks +==1490166== still reachable: 56 bytes in 3 blocks +==1490166== suppressed: 995,529 bytes in 13,911 blocks +==1490166== Reachable blocks (those to which a pointer was found) are not shown. +==1490166== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490166== +==1490166== For lists of detected and suppressed errors, rerun with: -s +==1490166== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCaBasedCellPopulation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCaBasedCellPopulation_valgrind.txt new file mode 100644 index 0000000000..66edc2390d --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCaBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==1490187== Memcheck, a memory error detector +==1490187== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490187== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490187== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==1490187== Parent PID: 1488630 +==1490187== +==1490187== +==1490187== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490187== Open file descriptor 12: +==1490187== at 0xEBAC07D: pipe (pipe.c:29) +==1490187== by 0x18A1D07D: ??? +==1490187== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490187== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490187== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490187== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490187== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490187== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490187== by 0x16556C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490187== by 0x15DBC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490187== by 0x160D98: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490187== by 0x160C38: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490187== by 0x1612CF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490187== by 0x15BFE5: main (TestCaBasedCellPopulation.cpp:19) +==1490187== +==1490187== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490187== at 0xEBB0A1C: __open_nocancel (open64_nocancel.c:39) +==1490187== by 0xEB34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490187== by 0xE49F822: ??? +==1490187== by 0xE49F96F: ??? +==1490187== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490187== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490187== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490187== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490187== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490187== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490187== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490187== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490187== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490187== by 0x16556C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490187== by 0x15DBC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490187== by 0x160D98: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490187== by 0x160C38: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490187== by 0x1612CF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490187== by 0x15BFE5: main (TestCaBasedCellPopulation.cpp:19) +==1490187== +==1490187== Open file descriptor 115: +==1490187== +==1490187== +==1490187== Open file descriptor 112: +==1490187== +==1490187== +==1490187== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaBasedCellPopulation_valgrind.txt +==1490187== +==1490187== +==1490187== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490187== +==1490187== +==1490187== +==1490187== HEAP SUMMARY: +==1490187== in use at exit: 995,585 bytes in 13,914 blocks +==1490187== total heap usage: 87,973 allocs, 74,059 frees, 1,580,415,564 bytes allocated +==1490187== +==1490187== LEAK SUMMARY: +==1490187== definitely lost: 0 bytes in 0 blocks +==1490187== indirectly lost: 0 bytes in 0 blocks +==1490187== possibly lost: 0 bytes in 0 blocks +==1490187== still reachable: 56 bytes in 3 blocks +==1490187== suppressed: 995,529 bytes in 13,911 blocks +==1490187== Reachable blocks (those to which a pointer was found) are not shown. +==1490187== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490187== +==1490187== For lists of detected and suppressed errors, rerun with: -s +==1490187== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCaBasedDivisionRules_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCaBasedDivisionRules_valgrind.txt new file mode 100644 index 0000000000..ac6fd98951 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCaBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==1490188== Memcheck, a memory error detector +==1490188== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490188== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490188== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==1490188== Parent PID: 1488630 +==1490188== +==1490188== +==1490188== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490188== Open file descriptor 12: +==1490188== at 0xE79A07D: pipe (pipe.c:29) +==1490188== by 0x18A1E07D: ??? +==1490188== by 0x12F724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490188== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490188== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490188== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1490188== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490188== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490188== by 0x12E085: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490188== by 0x128EDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490188== by 0x12B8BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490188== by 0x12B75E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490188== by 0x12BDF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490188== by 0x127305: main (TestCaBasedDivisionRules.cpp:19) +==1490188== +==1490188== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490188== at 0xE79EA1C: __open_nocancel (open64_nocancel.c:39) +==1490188== by 0xE722BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490188== by 0xCBD4822: ??? +==1490188== by 0xCBD496F: ??? +==1490188== by 0x130176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490188== by 0x13017938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490188== by 0x12FCD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490188== by 0x12F722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490188== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490188== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490188== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1490188== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490188== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490188== by 0x12E085: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490188== by 0x128EDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490188== by 0x12B8BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490188== by 0x12B75E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490188== by 0x12BDF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490188== by 0x127305: main (TestCaBasedDivisionRules.cpp:19) +==1490188== +==1490188== Open file descriptor 115: +==1490188== +==1490188== +==1490188== Open file descriptor 112: +==1490188== +==1490188== +==1490188== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaBasedDivisionRules_valgrind.txt +==1490188== +==1490188== +==1490188== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490188== +==1490188== +==1490188== +==1490188== HEAP SUMMARY: +==1490188== in use at exit: 995,601 bytes in 13,915 blocks +==1490188== total heap usage: 68,457 allocs, 54,542 frees, 1,572,140,418 bytes allocated +==1490188== +==1490188== LEAK SUMMARY: +==1490188== definitely lost: 0 bytes in 0 blocks +==1490188== indirectly lost: 0 bytes in 0 blocks +==1490188== possibly lost: 0 bytes in 0 blocks +==1490188== still reachable: 72 bytes in 4 blocks +==1490188== suppressed: 995,529 bytes in 13,911 blocks +==1490188== Reachable blocks (those to which a pointer was found) are not shown. +==1490188== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490188== +==1490188== For lists of detected and suppressed errors, rerun with: -s +==1490188== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCaUpdateRules_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCaUpdateRules_valgrind.txt new file mode 100644 index 0000000000..37da5b81aa --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCaUpdateRules_valgrind.txt @@ -0,0 +1,73 @@ +==1490189== Memcheck, a memory error detector +==1490189== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490189== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490189== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaUpdateRules -malloc_debug -malloc_dump -memory_info +==1490189== Parent PID: 1488630 +==1490189== +==1490189== +==1490189== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490189== Open file descriptor 12: +==1490189== at 0xD2E307D: pipe (pipe.c:29) +==1490189== by 0x18A1D07D: ??? +==1490189== by 0x1402B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490189== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490189== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490189== by 0xF49BD38: PetscInitialize (pinit.c:924) +==1490189== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490189== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490189== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490189== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490189== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490189== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490189== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490189== by 0x12A645: main (TestCaUpdateRules.cpp:18) +==1490189== +==1490189== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490189== at 0xD2E7A1C: __open_nocancel (open64_nocancel.c:39) +==1490189== by 0xD26BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490189== by 0xCBD4822: ??? +==1490189== by 0xCBD496F: ??? +==1490189== by 0x140D06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490189== by 0x140D0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490189== by 0x14086922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490189== by 0x1402B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490189== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490189== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490189== by 0xF49BD38: PetscInitialize (pinit.c:924) +==1490189== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490189== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490189== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490189== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490189== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490189== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490189== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490189== by 0x12A645: main (TestCaUpdateRules.cpp:18) +==1490189== +==1490189== Open file descriptor 115: +==1490189== +==1490189== +==1490189== Open file descriptor 112: +==1490189== +==1490189== +==1490189== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaUpdateRules_valgrind.txt +==1490189== +==1490189== +==1490189== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490189== +==1490189== +==1490189== +==1490189== HEAP SUMMARY: +==1490189== in use at exit: 995,585 bytes in 13,914 blocks +==1490189== total heap usage: 67,857 allocs, 53,943 frees, 1,572,214,533 bytes allocated +==1490189== +==1490189== LEAK SUMMARY: +==1490189== definitely lost: 0 bytes in 0 blocks +==1490189== indirectly lost: 0 bytes in 0 blocks +==1490189== possibly lost: 0 bytes in 0 blocks +==1490189== still reachable: 56 bytes in 3 blocks +==1490189== suppressed: 995,529 bytes in 13,911 blocks +==1490189== Reachable blocks (those to which a pointer was found) are not shown. +==1490189== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490189== +==1490189== For lists of detected and suppressed errors, rerun with: -s +==1490189== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCableTestProblem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCableTestProblem_valgrind.txt new file mode 100644 index 0000000000..4f80a789cf --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCableTestProblem_valgrind.txt @@ -0,0 +1,73 @@ +==1489452== Memcheck, a memory error detector +==1489452== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489452== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489452== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestCableTestProblem -malloc_debug -malloc_dump -memory_info +==1489452== Parent PID: 1488630 +==1489452== +==1489452== +==1489452== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489452== Open file descriptor 12: +==1489452== at 0x815707D: pipe (pipe.c:29) +==1489452== by 0x1014507D: ??? +==1489452== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489452== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489452== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489452== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489452== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489452== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489452== by 0x1419F6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489452== by 0x13CAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489452== by 0x13F69A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489452== by 0x13F595: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489452== by 0x13FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489452== by 0x13B2F5: main (TestCableTestProblem.cpp:18) +==1489452== +==1489452== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489452== at 0x815BA1C: __open_nocancel (open64_nocancel.c:39) +==1489452== by 0x80DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489452== by 0x79A3822: ??? +==1489452== by 0x79A396F: ??? +==1489452== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489452== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489452== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489452== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489452== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489452== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489452== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489452== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489452== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489452== by 0x1419F6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489452== by 0x13CAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489452== by 0x13F69A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489452== by 0x13F595: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489452== by 0x13FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489452== by 0x13B2F5: main (TestCableTestProblem.cpp:18) +==1489452== +==1489452== Open file descriptor 115: +==1489452== +==1489452== +==1489452== Open file descriptor 112: +==1489452== +==1489452== +==1489452== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCableTestProblem_valgrind.txt +==1489452== +==1489452== +==1489452== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489452== +==1489452== +==1489452== +==1489452== HEAP SUMMARY: +==1489452== in use at exit: 995,489 bytes in 13,913 blocks +==1489452== total heap usage: 116,757 allocs, 102,844 frees, 1,574,106,181 bytes allocated +==1489452== +==1489452== LEAK SUMMARY: +==1489452== definitely lost: 0 bytes in 0 blocks +==1489452== indirectly lost: 0 bytes in 0 blocks +==1489452== possibly lost: 0 bytes in 0 blocks +==1489452== still reachable: 24 bytes in 2 blocks +==1489452== suppressed: 995,465 bytes in 13,911 blocks +==1489452== Reachable blocks (those to which a pointer was found) are not shown. +==1489452== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489452== +==1489452== For lists of detected and suppressed errors, rerun with: -s +==1489452== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt new file mode 100644 index 0000000000..fa6974c562 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt @@ -0,0 +1,73 @@ +==1506224== Memcheck, a memory error detector +==1506224== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506224== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506224== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacElectroMechanicsFurtherFunctionality -malloc_debug -malloc_dump -memory_info +==1506224== Parent PID: 1488630 +==1506224== +==1506224== +==1506224== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506224== Open file descriptor 12: +==1506224== at 0xBA1B07D: pipe (pipe.c:29) +==1506224== by 0x13F9607D: ??? +==1506224== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506224== by 0xBC18418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506224== by 0xBBB1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506224== by 0x9FC3D38: PetscInitialize (pinit.c:924) +==1506224== by 0x9E9B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506224== by 0x9E9B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506224== by 0x123A6C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506224== by 0x11EC6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506224== by 0x1213DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506224== by 0x12127F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506224== by 0x121915: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506224== by 0x11D095: main (TestCardiacElectroMechanicsFurtherFunctionality.cpp:19) +==1506224== +==1506224== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506224== at 0xBA1FA1C: __open_nocancel (open64_nocancel.c:39) +==1506224== by 0xB9A3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506224== by 0xB24D822: ??? +==1506224== by 0xB24D96F: ??? +==1506224== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506224== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506224== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506224== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506224== by 0xBC18418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506224== by 0xBBB1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506224== by 0x9FC3D38: PetscInitialize (pinit.c:924) +==1506224== by 0x9E9B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506224== by 0x9E9B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506224== by 0x123A6C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506224== by 0x11EC6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506224== by 0x1213DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506224== by 0x12127F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506224== by 0x121915: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506224== by 0x11D095: main (TestCardiacElectroMechanicsFurtherFunctionality.cpp:19) +==1506224== +==1506224== Open file descriptor 115: +==1506224== +==1506224== +==1506224== Open file descriptor 112: +==1506224== +==1506224== +==1506224== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt +==1506224== +==1506224== +==1506224== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506224== +==1506224== +==1506224== +==1506224== HEAP SUMMARY: +==1506224== in use at exit: 995,990 bytes in 13,919 blocks +==1506224== total heap usage: 1,215,060 allocs, 1,201,141 frees, 1,731,608,819 bytes allocated +==1506224== +==1506224== LEAK SUMMARY: +==1506224== definitely lost: 0 bytes in 0 blocks +==1506224== indirectly lost: 0 bytes in 0 blocks +==1506224== possibly lost: 0 bytes in 0 blocks +==1506224== still reachable: 24 bytes in 2 blocks +==1506224== suppressed: 995,966 bytes in 13,917 blocks +==1506224== Reachable blocks (those to which a pointer was found) are not shown. +==1506224== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506224== +==1506224== For lists of detected and suppressed errors, rerun with: -s +==1506224== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 57 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestCardiacElectroMechanicsProblem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCardiacElectroMechanicsProblem_valgrind.txt new file mode 100644 index 0000000000..e8af3cc67b --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCardiacElectroMechanicsProblem_valgrind.txt @@ -0,0 +1,73 @@ +==1506139== Memcheck, a memory error detector +==1506139== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506139== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506139== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacElectroMechanicsProblem -malloc_debug -malloc_dump -memory_info +==1506139== Parent PID: 1488630 +==1506139== +==1506139== +==1506139== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506139== Open file descriptor 12: +==1506139== at 0xA86507D: pipe (pipe.c:29) +==1506139== by 0x13F9607D: ??? +==1506139== by 0xD5864CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506139== by 0xA06C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506139== by 0xA005D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506139== by 0xAA6ED38: PetscInitialize (pinit.c:924) +==1506139== by 0x9F2A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506139== by 0x9F2A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506139== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506139== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506139== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506139== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506139== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506139== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) +==1506139== +==1506139== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506139== at 0xA869A1C: __open_nocancel (open64_nocancel.c:39) +==1506139== by 0xA7EDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506139== by 0x9F5E822: ??? +==1506139== by 0x9F5E96F: ??? +==1506139== by 0xD62B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506139== by 0xD62B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506139== by 0xD5E1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506139== by 0xD5862DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506139== by 0xA06C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506139== by 0xA005D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506139== by 0xAA6ED38: PetscInitialize (pinit.c:924) +==1506139== by 0x9F2A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506139== by 0x9F2A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506139== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506139== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506139== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506139== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506139== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506139== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) +==1506139== +==1506139== Open file descriptor 115: +==1506139== +==1506139== +==1506139== Open file descriptor 112: +==1506139== +==1506139== +==1506139== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacElectroMechanicsProblem_valgrind.txt +==1506139== +==1506139== +==1506139== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506139== +==1506139== +==1506139== +==1506139== HEAP SUMMARY: +==1506139== in use at exit: 996,049 bytes in 13,923 blocks +==1506139== total heap usage: 598,045 allocs, 584,122 frees, 1,717,761,366 bytes allocated +==1506139== +==1506139== LEAK SUMMARY: +==1506139== definitely lost: 0 bytes in 0 blocks +==1506139== indirectly lost: 0 bytes in 0 blocks +==1506139== possibly lost: 0 bytes in 0 blocks +==1506139== still reachable: 24 bytes in 2 blocks +==1506139== suppressed: 996,025 bytes in 13,921 blocks +==1506139== Reachable blocks (those to which a pointer was found) are not shown. +==1506139== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506139== +==1506139== For lists of detected and suppressed errors, rerun with: -s +==1506139== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 79 from 38) diff --git a/log-files/2024-02-21_13-45-57/TestCardiacSimulationArchiver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCardiacSimulationArchiver_valgrind.txt new file mode 100644 index 0000000000..d33af0ae4c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCardiacSimulationArchiver_valgrind.txt @@ -0,0 +1,73 @@ +==1506951== Memcheck, a memory error detector +==1506951== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506951== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506951== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacSimulationArchiver -malloc_debug -malloc_dump -memory_info +==1506951== Parent PID: 1488630 +==1506951== +==1506951== +==1506951== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506951== Open file descriptor 12: +==1506951== at 0xBC2407D: pipe (pipe.c:29) +==1506951== by 0x13F9607D: ??? +==1506951== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506951== by 0xBF9F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506951== by 0xBF38D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506951== by 0xA2D9D38: PetscInitialize (pinit.c:924) +==1506951== by 0xA147153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506951== by 0xA1471A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506951== by 0x207DA8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506951== by 0x200F5B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506951== by 0x204A44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506951== by 0x2048E4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506951== by 0x204F7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506951== by 0x1FF1D5: main (TestCardiacSimulationArchiver.cpp:19) +==1506951== +==1506951== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506951== at 0xBC28A1C: __open_nocancel (open64_nocancel.c:39) +==1506951== by 0xBBACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506951== by 0xA17B822: ??? +==1506951== by 0xA17B96F: ??? +==1506951== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506951== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506951== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506951== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506951== by 0xBF9F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506951== by 0xBF38D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506951== by 0xA2D9D38: PetscInitialize (pinit.c:924) +==1506951== by 0xA147153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506951== by 0xA1471A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506951== by 0x207DA8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506951== by 0x200F5B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506951== by 0x204A44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506951== by 0x2048E4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506951== by 0x204F7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506951== by 0x1FF1D5: main (TestCardiacSimulationArchiver.cpp:19) +==1506951== +==1506951== Open file descriptor 115: +==1506951== +==1506951== +==1506951== Open file descriptor 112: +==1506951== +==1506951== +==1506951== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacSimulationArchiver_valgrind.txt +==1506951== +==1506951== +==1506951== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506951== +==1506951== +==1506951== +==1506951== HEAP SUMMARY: +==1506951== in use at exit: 995,990 bytes in 13,919 blocks +==1506951== total heap usage: 2,910,128 allocs, 2,896,209 frees, 2,543,716,448 bytes allocated +==1506951== +==1506951== LEAK SUMMARY: +==1506951== definitely lost: 0 bytes in 0 blocks +==1506951== indirectly lost: 0 bytes in 0 blocks +==1506951== possibly lost: 0 bytes in 0 blocks +==1506951== still reachable: 24 bytes in 2 blocks +==1506951== suppressed: 995,966 bytes in 13,917 blocks +==1506951== Reachable blocks (those to which a pointer was found) are not shown. +==1506951== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506951== +==1506951== For lists of detected and suppressed errors, rerun with: -s +==1506951== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 138 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestCardiacSimulation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCardiacSimulation_valgrind.txt new file mode 100644 index 0000000000..2bed2f69a7 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCardiacSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==1506944== Memcheck, a memory error detector +==1506944== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506944== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506944== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacSimulation -malloc_debug -malloc_dump -memory_info +==1506944== Parent PID: 1488630 +==1506944== +==1506944== +==1506944== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506944== Open file descriptor 12: +==1506944== at 0x892807D: pipe (pipe.c:29) +==1506944== by 0x13F9707D: ??? +==1506944== by 0xEAE04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506944== by 0xA023418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506944== by 0x9FBCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506944== by 0x8CB3D38: PetscInitialize (pinit.c:924) +==1506944== by 0x820F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506944== by 0x820F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506944== by 0x1202B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506944== by 0x11A98D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506944== by 0x11E13C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506944== by 0x11DFDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506944== by 0x11E673: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506944== by 0x118DB5: main (TestCardiacSimulation.cpp:19) +==1506944== +==1506944== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506944== at 0x892CA1C: __open_nocancel (open64_nocancel.c:39) +==1506944== by 0x88B0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506944== by 0x8243822: ??? +==1506944== by 0x824396F: ??? +==1506944== by 0xEB856DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506944== by 0xEB85938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506944== by 0xEB3B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506944== by 0xEAE02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506944== by 0xA023418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506944== by 0x9FBCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506944== by 0x8CB3D38: PetscInitialize (pinit.c:924) +==1506944== by 0x820F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506944== by 0x820F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506944== by 0x1202B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506944== by 0x11A98D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506944== by 0x11E13C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506944== by 0x11DFDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506944== by 0x11E673: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506944== by 0x118DB5: main (TestCardiacSimulation.cpp:19) +==1506944== +==1506944== Open file descriptor 115: +==1506944== +==1506944== +==1506944== Open file descriptor 112: +==1506944== +==1506944== +==1506944== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacSimulation_valgrind.txt +==1506944== +==1506944== +==1506944== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506944== +==1506944== +==1506944== +==1506944== HEAP SUMMARY: +==1506944== in use at exit: 1,003,266 bytes in 13,935 blocks +==1506944== total heap usage: 4,776,567 allocs, 4,762,632 frees, 3,070,161,548 bytes allocated +==1506944== +==1506944== LEAK SUMMARY: +==1506944== definitely lost: 0 bytes in 0 blocks +==1506944== indirectly lost: 0 bytes in 0 blocks +==1506944== possibly lost: 0 bytes in 0 blocks +==1506944== still reachable: 7,300 bytes in 18 blocks +==1506944== suppressed: 995,966 bytes in 13,917 blocks +==1506944== Reachable blocks (those to which a pointer was found) are not shown. +==1506944== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506944== +==1506944== For lists of detected and suppressed errors, rerun with: -s +==1506944== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 231 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestCellBasedCellProperties_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellBasedCellProperties_valgrind.txt new file mode 100644 index 0000000000..f72cbef27a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellBasedCellProperties_valgrind.txt @@ -0,0 +1,73 @@ +==1489783== Memcheck, a memory error detector +==1489783== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489783== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489783== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedCellProperties -malloc_debug -malloc_dump -memory_info +==1489783== Parent PID: 1488630 +==1489783== +==1489783== +==1489783== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489783== Open file descriptor 12: +==1489783== at 0xE45307D: pipe (pipe.c:29) +==1489783== by 0x18A1D07D: ??? +==1489783== by 0x12F724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489783== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489783== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489783== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1489783== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489783== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489783== by 0x12F18B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489783== by 0x129EE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489783== by 0x12CAE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489783== by 0x12C980: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489783== by 0x12D017: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489783== by 0x128305: main (TestCellBasedCellProperties.cpp:19) +==1489783== +==1489783== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489783== at 0xE457A1C: __open_nocancel (open64_nocancel.c:39) +==1489783== by 0xE3DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489783== by 0xCBD4822: ??? +==1489783== by 0xCBD496F: ??? +==1489783== by 0x130176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489783== by 0x13017938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489783== by 0x12FCD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489783== by 0x12F722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489783== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489783== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489783== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1489783== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489783== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489783== by 0x12F18B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489783== by 0x129EE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489783== by 0x12CAE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489783== by 0x12C980: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489783== by 0x12D017: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489783== by 0x128305: main (TestCellBasedCellProperties.cpp:19) +==1489783== +==1489783== Open file descriptor 115: +==1489783== +==1489783== +==1489783== Open file descriptor 112: +==1489783== +==1489783== +==1489783== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedCellProperties_valgrind.txt +==1489783== +==1489783== +==1489783== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489783== +==1489783== +==1489783== +==1489783== HEAP SUMMARY: +==1489783== in use at exit: 995,585 bytes in 13,914 blocks +==1489783== total heap usage: 65,538 allocs, 51,624 frees, 1,572,026,157 bytes allocated +==1489783== +==1489783== LEAK SUMMARY: +==1489783== definitely lost: 0 bytes in 0 blocks +==1489783== indirectly lost: 0 bytes in 0 blocks +==1489783== possibly lost: 0 bytes in 0 blocks +==1489783== still reachable: 56 bytes in 3 blocks +==1489783== suppressed: 995,529 bytes in 13,911 blocks +==1489783== Reachable blocks (those to which a pointer was found) are not shown. +==1489783== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489783== +==1489783== For lists of detected and suppressed errors, rerun with: -s +==1489783== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCellBasedEllipticPdeSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellBasedEllipticPdeSolver_valgrind.txt new file mode 100644 index 0000000000..53c1b3666a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellBasedEllipticPdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489901== Memcheck, a memory error detector +==1489901== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489901== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489901== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedEllipticPdeSolver -malloc_debug -malloc_dump -memory_info +==1489901== Parent PID: 1488630 +==1489901== +==1489901== +==1489901== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489901== Open file descriptor 12: +==1489901== at 0x103FD07D: pipe (pipe.c:29) +==1489901== by 0x18A1D07D: ??? +==1489901== by 0x140294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489901== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489901== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489901== by 0xE9BFD38: PetscInitialize (pinit.c:924) +==1489901== by 0xE897153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489901== by 0xE8971A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489901== by 0x13C922: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489901== by 0x137A33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489901== by 0x13A5DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489901== by 0x13A4D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489901== by 0x13AAE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489901== by 0x136235: main (TestCellBasedEllipticPdeSolver.cpp:18) +==1489901== +==1489901== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489901== at 0x10401A1C: __open_nocancel (open64_nocancel.c:39) +==1489901== by 0x10385BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489901== by 0xFC49822: ??? +==1489901== by 0xFC4996F: ??? +==1489901== by 0x140CE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489901== by 0x140CE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489901== by 0x14084922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489901== by 0x140292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489901== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489901== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489901== by 0xE9BFD38: PetscInitialize (pinit.c:924) +==1489901== by 0xE897153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489901== by 0xE8971A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489901== by 0x13C922: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489901== by 0x137A33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489901== by 0x13A5DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489901== by 0x13A4D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489901== by 0x13AAE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489901== by 0x136235: main (TestCellBasedEllipticPdeSolver.cpp:18) +==1489901== +==1489901== Open file descriptor 115: +==1489901== +==1489901== +==1489901== Open file descriptor 112: +==1489901== +==1489901== +==1489901== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEllipticPdeSolver_valgrind.txt +==1489901== +==1489901== +==1489901== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489901== +==1489901== +==1489901== +==1489901== HEAP SUMMARY: +==1489901== in use at exit: 995,553 bytes in 13,913 blocks +==1489901== total heap usage: 67,497 allocs, 53,584 frees, 1,572,474,904 bytes allocated +==1489901== +==1489901== LEAK SUMMARY: +==1489901== definitely lost: 0 bytes in 0 blocks +==1489901== indirectly lost: 0 bytes in 0 blocks +==1489901== possibly lost: 0 bytes in 0 blocks +==1489901== still reachable: 24 bytes in 2 blocks +==1489901== suppressed: 995,529 bytes in 13,911 blocks +==1489901== Reachable blocks (those to which a pointer was found) are not shown. +==1489901== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489901== +==1489901== For lists of detected and suppressed errors, rerun with: -s +==1489901== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCellBasedEllipticPdes_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellBasedEllipticPdes_valgrind.txt new file mode 100644 index 0000000000..2a990ffba3 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellBasedEllipticPdes_valgrind.txt @@ -0,0 +1,73 @@ +==1489893== Memcheck, a memory error detector +==1489893== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489893== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489893== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedEllipticPdes -malloc_debug -malloc_dump -memory_info +==1489893== Parent PID: 1488630 +==1489893== +==1489893== +==1489893== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489893== Open file descriptor 12: +==1489893== at 0x1006307D: pipe (pipe.c:29) +==1489893== by 0x18A1D07D: ??? +==1489893== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489893== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489893== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489893== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1489893== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489893== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489893== by 0x12CAB7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489893== by 0x127CC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489893== by 0x12A3DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489893== by 0x12A2D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489893== by 0x12A8EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489893== by 0x1264C5: main (TestCellBasedEllipticPdes.cpp:18) +==1489893== +==1489893== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489893== at 0x10067A1C: __open_nocancel (open64_nocancel.c:39) +==1489893== by 0xFFEBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489893== by 0xE49F822: ??? +==1489893== by 0xE49F96F: ??? +==1489893== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489893== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489893== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489893== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489893== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489893== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489893== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1489893== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489893== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489893== by 0x12CAB7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489893== by 0x127CC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489893== by 0x12A3DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489893== by 0x12A2D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489893== by 0x12A8EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489893== by 0x1264C5: main (TestCellBasedEllipticPdes.cpp:18) +==1489893== +==1489893== Open file descriptor 115: +==1489893== +==1489893== +==1489893== Open file descriptor 112: +==1489893== +==1489893== +==1489893== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEllipticPdes_valgrind.txt +==1489893== +==1489893== +==1489893== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489893== +==1489893== +==1489893== +==1489893== HEAP SUMMARY: +==1489893== in use at exit: 995,585 bytes in 13,914 blocks +==1489893== total heap usage: 91,275 allocs, 77,361 frees, 1,576,997,594 bytes allocated +==1489893== +==1489893== LEAK SUMMARY: +==1489893== definitely lost: 0 bytes in 0 blocks +==1489893== indirectly lost: 0 bytes in 0 blocks +==1489893== possibly lost: 0 bytes in 0 blocks +==1489893== still reachable: 56 bytes in 3 blocks +==1489893== suppressed: 995,529 bytes in 13,911 blocks +==1489893== Reachable blocks (those to which a pointer was found) are not shown. +==1489893== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489893== +==1489893== For lists of detected and suppressed errors, rerun with: -s +==1489893== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCellBasedEventHandler_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellBasedEventHandler_valgrind.txt new file mode 100644 index 0000000000..5883b967ab --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellBasedEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==1488635== Memcheck, a memory error detector +==1488635== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488635== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488635== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCellBasedEventHandler -malloc_debug -malloc_dump -memory_info +==1488635== Parent PID: 1488630 +==1488635== +==1488635== +==1488635== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488635== Open file descriptor 12: +==1488635== at 0x4DED07D: pipe (pipe.c:29) +==1488635== by 0xAEA407D: ??? +==1488635== by 0x643C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488635== by 0x4A3A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488635== by 0x49D3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488635== by 0x5038D38: PetscInitialize (pinit.c:924) +==1488635== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488635== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488635== by 0x114A22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488635== by 0x110173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488635== by 0x112AEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488635== by 0x1129E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488635== by 0x112FFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488635== by 0x10E975: main (TestCellBasedEventHandler.cpp:18) +==1488635== +==1488635== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488635== at 0x4DF1A1C: __open_nocancel (open64_nocancel.c:39) +==1488635== by 0x4D75BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488635== by 0x492E822: ??? +==1488635== by 0x492E96F: ??? +==1488635== by 0x64E36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488635== by 0x64E3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488635== by 0x6499922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488635== by 0x643C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488635== by 0x4A3A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488635== by 0x49D3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488635== by 0x5038D38: PetscInitialize (pinit.c:924) +==1488635== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488635== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488635== by 0x114A22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488635== by 0x110173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488635== by 0x112AEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488635== by 0x1129E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488635== by 0x112FFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488635== by 0x10E975: main (TestCellBasedEventHandler.cpp:18) +==1488635== +==1488635== Open file descriptor 115: +==1488635== +==1488635== +==1488635== Open file descriptor 112: +==1488635== +==1488635== +==1488635== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEventHandler_valgrind.txt +==1488635== +==1488635== +==1488635== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488635== +==1488635== +==1488635== +==1488635== HEAP SUMMARY: +==1488635== in use at exit: 995,073 bytes in 13,913 blocks +==1488635== total heap usage: 57,567 allocs, 43,654 frees, 1,571,237,478 bytes allocated +==1488635== +==1488635== LEAK SUMMARY: +==1488635== definitely lost: 0 bytes in 0 blocks +==1488635== indirectly lost: 0 bytes in 0 blocks +==1488635== possibly lost: 0 bytes in 0 blocks +==1488635== still reachable: 24 bytes in 2 blocks +==1488635== suppressed: 995,049 bytes in 13,911 blocks +==1488635== Reachable blocks (those to which a pointer was found) are not shown. +==1488635== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488635== +==1488635== For lists of detected and suppressed errors, rerun with: -s +==1488635== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestCellBasedParabolicPdes_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellBasedParabolicPdes_valgrind.txt new file mode 100644 index 0000000000..ee709b3735 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellBasedParabolicPdes_valgrind.txt @@ -0,0 +1,73 @@ +==1489902== Memcheck, a memory error detector +==1489902== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489902== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489902== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedParabolicPdes -malloc_debug -malloc_dump -memory_info +==1489902== Parent PID: 1488630 +==1489902== +==1489902== +==1489902== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489902== Open file descriptor 12: +==1489902== at 0x1006307D: pipe (pipe.c:29) +==1489902== by 0x18A1D07D: ??? +==1489902== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489902== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489902== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489902== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1489902== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489902== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489902== by 0x12B8B3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489902== by 0x126B23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489902== by 0x1291D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489902== by 0x1290D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489902== by 0x1296E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489902== by 0x125325: main (TestCellBasedParabolicPdes.cpp:18) +==1489902== +==1489902== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489902== at 0x10067A1C: __open_nocancel (open64_nocancel.c:39) +==1489902== by 0xFFEBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489902== by 0xE49F822: ??? +==1489902== by 0xE49F96F: ??? +==1489902== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489902== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489902== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489902== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489902== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489902== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489902== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1489902== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489902== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489902== by 0x12B8B3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489902== by 0x126B23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489902== by 0x1291D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489902== by 0x1290D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489902== by 0x1296E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489902== by 0x125325: main (TestCellBasedParabolicPdes.cpp:18) +==1489902== +==1489902== Open file descriptor 115: +==1489902== +==1489902== +==1489902== Open file descriptor 112: +==1489902== +==1489902== +==1489902== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedParabolicPdes_valgrind.txt +==1489902== +==1489902== +==1489902== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489902== +==1489902== +==1489902== +==1489902== HEAP SUMMARY: +==1489902== in use at exit: 995,585 bytes in 13,914 blocks +==1489902== total heap usage: 81,669 allocs, 67,755 frees, 1,575,192,382 bytes allocated +==1489902== +==1489902== LEAK SUMMARY: +==1489902== definitely lost: 0 bytes in 0 blocks +==1489902== indirectly lost: 0 bytes in 0 blocks +==1489902== possibly lost: 0 bytes in 0 blocks +==1489902== still reachable: 56 bytes in 3 blocks +==1489902== suppressed: 995,529 bytes in 13,911 blocks +==1489902== Reachable blocks (those to which a pointer was found) are not shown. +==1489902== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489902== +==1489902== For lists of detected and suppressed errors, rerun with: -s +==1489902== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCellBetaCateninWriter_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellBetaCateninWriter_valgrind.txt new file mode 100644 index 0000000000..90154ca503 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellBetaCateninWriter_valgrind.txt @@ -0,0 +1,73 @@ +==1504306== Memcheck, a memory error detector +==1504306== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504306== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504306== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellBetaCateninWriter -malloc_debug -malloc_dump -memory_info +==1504306== Parent PID: 1488630 +==1504306== +==1504306== +==1504306== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504306== Open file descriptor 12: +==1504306== at 0x1046E07D: pipe (pipe.c:29) +==1504306== by 0x1A6DF07D: ??? +==1504306== by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504306== by 0x121B2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504306== by 0x1214BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504306== by 0x10E42D38: PetscInitialize (pinit.c:924) +==1504306== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504306== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504306== by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504306== by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504306== by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504306== by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504306== by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504306== by 0x12E905: main (TestCellBetaCateninWriter.cpp:18) +==1504306== +==1504306== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504306== at 0x10472A1C: __open_nocancel (open64_nocancel.c:39) +==1504306== by 0x103F6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504306== by 0xFD5F822: ??? +==1504306== by 0xFD5F96F: ??? +==1504306== by 0x159956DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504306== by 0x15995938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504306== by 0x1594B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504306== by 0x158F02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504306== by 0x121B2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504306== by 0x1214BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504306== by 0x10E42D38: PetscInitialize (pinit.c:924) +==1504306== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504306== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504306== by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504306== by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504306== by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504306== by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504306== by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504306== by 0x12E905: main (TestCellBetaCateninWriter.cpp:18) +==1504306== +==1504306== Open file descriptor 115: +==1504306== +==1504306== +==1504306== Open file descriptor 112: +==1504306== +==1504306== +==1504306== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBetaCateninWriter_valgrind.txt +==1504306== +==1504306== +==1504306== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504306== +==1504306== +==1504306== +==1504306== HEAP SUMMARY: +==1504306== in use at exit: 995,681 bytes in 13,915 blocks +==1504306== total heap usage: 75,391 allocs, 61,476 frees, 1,574,123,386 bytes allocated +==1504306== +==1504306== LEAK SUMMARY: +==1504306== definitely lost: 0 bytes in 0 blocks +==1504306== indirectly lost: 0 bytes in 0 blocks +==1504306== possibly lost: 0 bytes in 0 blocks +==1504306== still reachable: 136 bytes in 4 blocks +==1504306== suppressed: 995,545 bytes in 13,911 blocks +==1504306== Reachable blocks (those to which a pointer was found) are not shown. +==1504306== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504306== +==1504306== For lists of detected and suppressed errors, rerun with: -s +==1504306== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCellCycleModelOdeSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellCycleModelOdeSolver_valgrind.txt new file mode 100644 index 0000000000..5bd750e2c0 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellCycleModelOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489801== Memcheck, a memory error detector +==1489801== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489801== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489801== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellCycleModelOdeSolver -malloc_debug -malloc_dump -memory_info +==1489801== Parent PID: 1488630 +==1489801== +==1489801== +==1489801== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489801== Open file descriptor 12: +==1489801== at 0xE69807D: pipe (pipe.c:29) +==1489801== by 0x18A1D07D: ??? +==1489801== by 0x12FC34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489801== by 0xE2E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489801== by 0xE27ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489801== by 0xCF75D38: PetscInitialize (pinit.c:924) +==1489801== by 0xCDE5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489801== by 0xCDE51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489801== by 0x162DFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489801== by 0x15D597: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489801== by 0x1604CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489801== by 0x16036A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489801== by 0x160A01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489801== by 0x15B575: main (TestCellCycleModelOdeSolver.cpp:19) +==1489801== +==1489801== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489801== at 0xE69CA1C: __open_nocancel (open64_nocancel.c:39) +==1489801== by 0xE620BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489801== by 0xCE19822: ??? +==1489801== by 0xCE1996F: ??? +==1489801== by 0x130686DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489801== by 0x13068938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489801== by 0x1301E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489801== by 0x12FC32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489801== by 0xE2E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489801== by 0xE27ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489801== by 0xCF75D38: PetscInitialize (pinit.c:924) +==1489801== by 0xCDE5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489801== by 0xCDE51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489801== by 0x162DFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489801== by 0x15D597: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489801== by 0x1604CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489801== by 0x16036A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489801== by 0x160A01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489801== by 0x15B575: main (TestCellCycleModelOdeSolver.cpp:19) +==1489801== +==1489801== Open file descriptor 115: +==1489801== +==1489801== +==1489801== Open file descriptor 112: +==1489801== +==1489801== +==1489801== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellCycleModelOdeSolver_valgrind.txt +==1489801== +==1489801== +==1489801== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489801== +==1489801== +==1489801== +==1489801== HEAP SUMMARY: +==1489801== in use at exit: 995,585 bytes in 13,914 blocks +==1489801== total heap usage: 559,519 allocs, 545,605 frees, 1,577,789,468 bytes allocated +==1489801== +==1489801== LEAK SUMMARY: +==1489801== definitely lost: 0 bytes in 0 blocks +==1489801== indirectly lost: 0 bytes in 0 blocks +==1489801== possibly lost: 0 bytes in 0 blocks +==1489801== still reachable: 56 bytes in 3 blocks +==1489801== suppressed: 995,529 bytes in 13,911 blocks +==1489801== Reachable blocks (those to which a pointer was found) are not shown. +==1489801== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489801== +==1489801== For lists of detected and suppressed errors, rerun with: -s +==1489801== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCellDataMaps_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellDataMaps_valgrind.txt new file mode 100644 index 0000000000..692f3c5a86 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellDataMaps_valgrind.txt @@ -0,0 +1,73 @@ +==1489807== Memcheck, a memory error detector +==1489807== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489807== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489807== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellDataMaps -malloc_debug -malloc_dump -memory_info +==1489807== Parent PID: 1488630 +==1489807== +==1489807== +==1489807== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489807== Open file descriptor 12: +==1489807== at 0xE4A007D: pipe (pipe.c:29) +==1489807== by 0x18A1D07D: ??? +==1489807== by 0x12F724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489807== by 0xE0EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489807== by 0xE088D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489807== by 0xCD59D38: PetscInitialize (pinit.c:924) +==1489807== by 0xCC31153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489807== by 0xCC311A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489807== by 0x11C5E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489807== by 0x11792D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489807== by 0x11A1FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489807== by 0x11A09E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489807== by 0x11A735: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489807== by 0x115D55: main (TestCellDataMaps.cpp:19) +==1489807== +==1489807== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489807== at 0xE4A4A1C: __open_nocancel (open64_nocancel.c:39) +==1489807== by 0xE428BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489807== by 0xDFE3822: ??? +==1489807== by 0xDFE396F: ??? +==1489807== by 0x130176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489807== by 0x13017938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489807== by 0x12FCD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489807== by 0x12F722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489807== by 0xE0EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489807== by 0xE088D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489807== by 0xCD59D38: PetscInitialize (pinit.c:924) +==1489807== by 0xCC31153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489807== by 0xCC311A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489807== by 0x11C5E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489807== by 0x11792D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489807== by 0x11A1FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489807== by 0x11A09E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489807== by 0x11A735: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489807== by 0x115D55: main (TestCellDataMaps.cpp:19) +==1489807== +==1489807== Open file descriptor 115: +==1489807== +==1489807== +==1489807== Open file descriptor 112: +==1489807== +==1489807== +==1489807== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellDataMaps_valgrind.txt +==1489807== +==1489807== +==1489807== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489807== +==1489807== +==1489807== +==1489807== HEAP SUMMARY: +==1489807== in use at exit: 995,713 bytes in 13,915 blocks +==1489807== total heap usage: 65,767 allocs, 51,852 frees, 1,572,008,668 bytes allocated +==1489807== +==1489807== LEAK SUMMARY: +==1489807== definitely lost: 0 bytes in 0 blocks +==1489807== indirectly lost: 0 bytes in 0 blocks +==1489807== possibly lost: 0 bytes in 0 blocks +==1489807== still reachable: 184 bytes in 4 blocks +==1489807== suppressed: 995,529 bytes in 13,911 blocks +==1489807== Reachable blocks (those to which a pointer was found) are not shown. +==1489807== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489807== +==1489807== For lists of detected and suppressed errors, rerun with: -s +==1489807== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCellForCrypt_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellForCrypt_valgrind.txt new file mode 100644 index 0000000000..001949ba42 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==1504165== Memcheck, a memory error detector +==1504165== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504165== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504165== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellForCrypt -malloc_debug -malloc_dump -memory_info +==1504165== Parent PID: 1488630 +==1504165== +==1504165== +==1504165== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504165== Open file descriptor 12: +==1504165== at 0xEB6107D: pipe (pipe.c:29) +==1504165== by 0x1A6DE07D: ??? +==1504165== by 0x158F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504165== by 0x121B2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504165== by 0x1214BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504165== by 0x10E42D38: PetscInitialize (pinit.c:924) +==1504165== by 0xE462153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504165== by 0xE4621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504165== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504165== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504165== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504165== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504165== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504165== by 0x118975: main (TestCellForCrypt.cpp:18) +==1504165== +==1504165== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504165== at 0xEB65A1C: __open_nocancel (open64_nocancel.c:39) +==1504165== by 0xEAE9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504165== by 0xE496822: ??? +==1504165== by 0xE49696F: ??? +==1504165== by 0x159986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504165== by 0x15998938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504165== by 0x1594E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504165== by 0x158F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504165== by 0x121B2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504165== by 0x1214BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504165== by 0x10E42D38: PetscInitialize (pinit.c:924) +==1504165== by 0xE462153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504165== by 0xE4621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504165== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504165== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504165== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504165== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504165== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504165== by 0x118975: main (TestCellForCrypt.cpp:18) +==1504165== +==1504165== Open file descriptor 115: +==1504165== +==1504165== +==1504165== Open file descriptor 112: +==1504165== +==1504165== +==1504165== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellForCrypt_valgrind.txt +==1504165== +==1504165== +==1504165== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504165== +==1504165== +==1504165== +==1504165== HEAP SUMMARY: +==1504165== in use at exit: 995,729 bytes in 13,915 blocks +==1504165== total heap usage: 67,887 allocs, 53,972 frees, 1,572,229,458 bytes allocated +==1504165== +==1504165== LEAK SUMMARY: +==1504165== definitely lost: 0 bytes in 0 blocks +==1504165== indirectly lost: 0 bytes in 0 blocks +==1504165== possibly lost: 0 bytes in 0 blocks +==1504165== still reachable: 184 bytes in 4 blocks +==1504165== suppressed: 995,545 bytes in 13,911 blocks +==1504165== Reachable blocks (those to which a pointer was found) are not shown. +==1504165== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504165== +==1504165== For lists of detected and suppressed errors, rerun with: -s +==1504165== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCellKillers_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellKillers_valgrind.txt new file mode 100644 index 0000000000..77362b6125 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellKillers_valgrind.txt @@ -0,0 +1,73 @@ +==1490216== Memcheck, a memory error detector +==1490216== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490216== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490216== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellKillers -malloc_debug -malloc_dump -memory_info +==1490216== Parent PID: 1488630 +==1490216== +==1490216== +==1490216== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490216== Open file descriptor 12: +==1490216== at 0x1014A07D: pipe (pipe.c:29) +==1490216== by 0x18A1D07D: ??? +==1490216== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490216== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490216== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490216== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1490216== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490216== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490216== by 0x1A4341: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490216== by 0x19C239: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490216== by 0x19F87C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490216== by 0x19F71C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490216== by 0x19FDB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490216== by 0x19A655: main (TestCellKillers.cpp:19) +==1490216== +==1490216== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490216== at 0x1014EA1C: __open_nocancel (open64_nocancel.c:39) +==1490216== by 0x100D2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490216== by 0xE49F822: ??? +==1490216== by 0xE49F96F: ??? +==1490216== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490216== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490216== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490216== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490216== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490216== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490216== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1490216== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490216== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490216== by 0x1A4341: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490216== by 0x19C239: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490216== by 0x19F87C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490216== by 0x19F71C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490216== by 0x19FDB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490216== by 0x19A655: main (TestCellKillers.cpp:19) +==1490216== +==1490216== Open file descriptor 115: +==1490216== +==1490216== +==1490216== Open file descriptor 112: +==1490216== +==1490216== +==1490216== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellKillers_valgrind.txt +==1490216== +==1490216== +==1490216== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490216== +==1490216== +==1490216== +==1490216== HEAP SUMMARY: +==1490216== in use at exit: 995,585 bytes in 13,914 blocks +==1490216== total heap usage: 131,870 allocs, 117,956 frees, 1,577,174,250 bytes allocated +==1490216== +==1490216== LEAK SUMMARY: +==1490216== definitely lost: 0 bytes in 0 blocks +==1490216== indirectly lost: 0 bytes in 0 blocks +==1490216== possibly lost: 0 bytes in 0 blocks +==1490216== still reachable: 56 bytes in 3 blocks +==1490216== suppressed: 995,529 bytes in 13,911 blocks +==1490216== Reachable blocks (those to which a pointer was found) are not shown. +==1490216== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490216== +==1490216== For lists of detected and suppressed errors, rerun with: -s +==1490216== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 40) diff --git a/log-files/2024-02-21_13-45-57/TestCellMutationStates_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellMutationStates_valgrind.txt new file mode 100644 index 0000000000..15046cf744 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellMutationStates_valgrind.txt @@ -0,0 +1,73 @@ +==1489808== Memcheck, a memory error detector +==1489808== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489808== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489808== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellMutationStates -malloc_debug -malloc_dump -memory_info +==1489808== Parent PID: 1488630 +==1489808== +==1489808== +==1489808== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489808== Open file descriptor 12: +==1489808== at 0xE45307D: pipe (pipe.c:29) +==1489808== by 0x18A1D07D: ??? +==1489808== by 0x12F724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489808== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489808== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489808== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1489808== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489808== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489808== by 0x12BE69: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489808== by 0x126E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489808== by 0x129792: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489808== by 0x129632: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489808== by 0x129CC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489808== by 0x125225: main (TestCellMutationStates.cpp:19) +==1489808== +==1489808== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489808== at 0xE457A1C: __open_nocancel (open64_nocancel.c:39) +==1489808== by 0xE3DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489808== by 0xCBD4822: ??? +==1489808== by 0xCBD496F: ??? +==1489808== by 0x130176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489808== by 0x13017938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489808== by 0x12FCD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489808== by 0x12F722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489808== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489808== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489808== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1489808== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489808== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489808== by 0x12BE69: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489808== by 0x126E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489808== by 0x129792: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489808== by 0x129632: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489808== by 0x129CC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489808== by 0x125225: main (TestCellMutationStates.cpp:19) +==1489808== +==1489808== Open file descriptor 115: +==1489808== +==1489808== +==1489808== Open file descriptor 112: +==1489808== +==1489808== +==1489808== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellMutationStates_valgrind.txt +==1489808== +==1489808== +==1489808== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489808== +==1489808== +==1489808== +==1489808== HEAP SUMMARY: +==1489808== in use at exit: 995,585 bytes in 13,914 blocks +==1489808== total heap usage: 65,287 allocs, 51,373 frees, 1,571,954,422 bytes allocated +==1489808== +==1489808== LEAK SUMMARY: +==1489808== definitely lost: 0 bytes in 0 blocks +==1489808== indirectly lost: 0 bytes in 0 blocks +==1489808== possibly lost: 0 bytes in 0 blocks +==1489808== still reachable: 56 bytes in 3 blocks +==1489808== suppressed: 995,529 bytes in 13,911 blocks +==1489808== Reachable blocks (those to which a pointer was found) are not shown. +==1489808== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489808== +==1489808== For lists of detected and suppressed errors, rerun with: -s +==1489808== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 43) diff --git a/log-files/2024-02-21_13-45-57/TestCellPopulationBoundaryConditions_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellPopulationBoundaryConditions_valgrind.txt new file mode 100644 index 0000000000..25cd8311f4 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellPopulationBoundaryConditions_valgrind.txt @@ -0,0 +1,73 @@ +==1490223== Memcheck, a memory error detector +==1490223== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490223== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490223== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationBoundaryConditions -malloc_debug -malloc_dump -memory_info +==1490223== Parent PID: 1488630 +==1490223== +==1490223== +==1490223== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490223== Open file descriptor 12: +==1490223== at 0xEC9507D: pipe (pipe.c:29) +==1490223== by 0x18A1D07D: ??? +==1490223== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490223== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490223== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490223== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490223== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490223== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490223== by 0x1540EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490223== by 0x14CBDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490223== by 0x14FA32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490223== by 0x14F8D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490223== by 0x14FF69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490223== by 0x14B005: main (TestCellPopulationBoundaryConditions.cpp:19) +==1490223== +==1490223== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490223== at 0xEC99A1C: __open_nocancel (open64_nocancel.c:39) +==1490223== by 0xEC1DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490223== by 0xE49F822: ??? +==1490223== by 0xE49F96F: ??? +==1490223== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490223== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490223== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490223== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490223== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490223== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490223== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490223== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490223== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490223== by 0x1540EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490223== by 0x14CBDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490223== by 0x14FA32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490223== by 0x14F8D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490223== by 0x14FF69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490223== by 0x14B005: main (TestCellPopulationBoundaryConditions.cpp:19) +==1490223== +==1490223== Open file descriptor 115: +==1490223== +==1490223== +==1490223== Open file descriptor 112: +==1490223== +==1490223== +==1490223== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationBoundaryConditions_valgrind.txt +==1490223== +==1490223== +==1490223== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490223== +==1490223== +==1490223== +==1490223== HEAP SUMMARY: +==1490223== in use at exit: 995,585 bytes in 13,914 blocks +==1490223== total heap usage: 82,414 allocs, 68,500 frees, 1,575,511,937 bytes allocated +==1490223== +==1490223== LEAK SUMMARY: +==1490223== definitely lost: 0 bytes in 0 blocks +==1490223== indirectly lost: 0 bytes in 0 blocks +==1490223== possibly lost: 0 bytes in 0 blocks +==1490223== still reachable: 56 bytes in 3 blocks +==1490223== suppressed: 995,529 bytes in 13,911 blocks +==1490223== Reachable blocks (those to which a pointer was found) are not shown. +==1490223== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490223== +==1490223== For lists of detected and suppressed errors, rerun with: -s +==1490223== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCellPopulationCountWriters_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellPopulationCountWriters_valgrind.txt new file mode 100644 index 0000000000..efb4442e5e --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellPopulationCountWriters_valgrind.txt @@ -0,0 +1,73 @@ +==1490230== Memcheck, a memory error detector +==1490230== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490230== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490230== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationCountWriters -malloc_debug -malloc_dump -memory_info +==1490230== Parent PID: 1488630 +==1490230== +==1490230== +==1490230== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490230== Open file descriptor 12: +==1490230== at 0xEBAC07D: pipe (pipe.c:29) +==1490230== by 0x18A1D07D: ??? +==1490230== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490230== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490230== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490230== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490230== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490230== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490230== by 0x136AD2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490230== by 0x12FEE3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490230== by 0x132890: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490230== by 0x13278B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490230== by 0x132D9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490230== by 0x12E6E5: main (TestCellPopulationCountWriters.cpp:18) +==1490230== +==1490230== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490230== at 0xEBB0A1C: __open_nocancel (open64_nocancel.c:39) +==1490230== by 0xEB34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490230== by 0xE49F822: ??? +==1490230== by 0xE49F96F: ??? +==1490230== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490230== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490230== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490230== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490230== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490230== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490230== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490230== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490230== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490230== by 0x136AD2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490230== by 0x12FEE3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490230== by 0x132890: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490230== by 0x13278B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490230== by 0x132D9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490230== by 0x12E6E5: main (TestCellPopulationCountWriters.cpp:18) +==1490230== +==1490230== Open file descriptor 115: +==1490230== +==1490230== +==1490230== Open file descriptor 112: +==1490230== +==1490230== +==1490230== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationCountWriters_valgrind.txt +==1490230== +==1490230== +==1490230== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490230== +==1490230== +==1490230== +==1490230== HEAP SUMMARY: +==1490230== in use at exit: 995,585 bytes in 13,914 blocks +==1490230== total heap usage: 67,238 allocs, 53,324 frees, 1,573,791,751 bytes allocated +==1490230== +==1490230== LEAK SUMMARY: +==1490230== definitely lost: 0 bytes in 0 blocks +==1490230== indirectly lost: 0 bytes in 0 blocks +==1490230== possibly lost: 0 bytes in 0 blocks +==1490230== still reachable: 56 bytes in 3 blocks +==1490230== suppressed: 995,529 bytes in 13,911 blocks +==1490230== Reachable blocks (those to which a pointer was found) are not shown. +==1490230== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490230== +==1490230== For lists of detected and suppressed errors, rerun with: -s +==1490230== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 43) diff --git a/log-files/2024-02-21_13-45-57/TestCellPopulationEventWriters_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellPopulationEventWriters_valgrind.txt new file mode 100644 index 0000000000..ffdb77fae6 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellPopulationEventWriters_valgrind.txt @@ -0,0 +1,73 @@ +==1490231== Memcheck, a memory error detector +==1490231== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490231== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490231== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationEventWriters -malloc_debug -malloc_dump -memory_info +==1490231== Parent PID: 1488630 +==1490231== +==1490231== +==1490231== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490231== Open file descriptor 12: +==1490231== at 0xEBAC07D: pipe (pipe.c:29) +==1490231== by 0x18A1D07D: ??? +==1490231== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490231== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490231== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490231== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490231== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490231== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490231== by 0x1343F6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490231== by 0x12D3DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490231== by 0x12FDE6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490231== by 0x12FC86: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490231== by 0x13031D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490231== by 0x12B805: main (TestCellPopulationEventWriters.cpp:19) +==1490231== +==1490231== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490231== at 0xEBB0A1C: __open_nocancel (open64_nocancel.c:39) +==1490231== by 0xEB34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490231== by 0xE49F822: ??? +==1490231== by 0xE49F96F: ??? +==1490231== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490231== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490231== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490231== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490231== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490231== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490231== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490231== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490231== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490231== by 0x1343F6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490231== by 0x12D3DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490231== by 0x12FDE6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490231== by 0x12FC86: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490231== by 0x13031D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490231== by 0x12B805: main (TestCellPopulationEventWriters.cpp:19) +==1490231== +==1490231== Open file descriptor 115: +==1490231== +==1490231== +==1490231== Open file descriptor 112: +==1490231== +==1490231== +==1490231== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationEventWriters_valgrind.txt +==1490231== +==1490231== +==1490231== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490231== +==1490231== +==1490231== +==1490231== HEAP SUMMARY: +==1490231== in use at exit: 995,585 bytes in 13,914 blocks +==1490231== total heap usage: 76,639 allocs, 62,725 frees, 1,573,362,392 bytes allocated +==1490231== +==1490231== LEAK SUMMARY: +==1490231== definitely lost: 0 bytes in 0 blocks +==1490231== indirectly lost: 0 bytes in 0 blocks +==1490231== possibly lost: 0 bytes in 0 blocks +==1490231== still reachable: 56 bytes in 3 blocks +==1490231== suppressed: 995,529 bytes in 13,911 blocks +==1490231== Reachable blocks (those to which a pointer was found) are not shown. +==1490231== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490231== +==1490231== For lists of detected and suppressed errors, rerun with: -s +==1490231== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCellPopulationWriters_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellPopulationWriters_valgrind.txt new file mode 100644 index 0000000000..613dec4fb4 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellPopulationWriters_valgrind.txt @@ -0,0 +1,73 @@ +==1490233== Memcheck, a memory error detector +==1490233== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490233== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490233== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationWriters -malloc_debug -malloc_dump -memory_info +==1490233== Parent PID: 1488630 +==1490233== +==1490233== +==1490233== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490233== Open file descriptor 12: +==1490233== at 0xEBAC07D: pipe (pipe.c:29) +==1490233== by 0x18A1D07D: ??? +==1490233== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490233== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490233== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490233== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490233== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490233== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490233== by 0x14496A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490233== by 0x13D37D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490233== by 0x140268: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490233== by 0x140108: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490233== by 0x14079F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490233== by 0x13B7A5: main (TestCellPopulationWriters.cpp:19) +==1490233== +==1490233== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490233== at 0xEBB0A1C: __open_nocancel (open64_nocancel.c:39) +==1490233== by 0xEB34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490233== by 0xE49F822: ??? +==1490233== by 0xE49F96F: ??? +==1490233== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490233== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490233== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490233== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490233== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490233== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490233== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490233== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490233== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490233== by 0x14496A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490233== by 0x13D37D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490233== by 0x140268: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490233== by 0x140108: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490233== by 0x14079F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490233== by 0x13B7A5: main (TestCellPopulationWriters.cpp:19) +==1490233== +==1490233== Open file descriptor 115: +==1490233== +==1490233== +==1490233== Open file descriptor 112: +==1490233== +==1490233== +==1490233== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationWriters_valgrind.txt +==1490233== +==1490233== +==1490233== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490233== +==1490233== +==1490233== +==1490233== HEAP SUMMARY: +==1490233== in use at exit: 995,585 bytes in 13,914 blocks +==1490233== total heap usage: 136,169 allocs, 122,255 frees, 1,582,924,029 bytes allocated +==1490233== +==1490233== LEAK SUMMARY: +==1490233== definitely lost: 0 bytes in 0 blocks +==1490233== indirectly lost: 0 bytes in 0 blocks +==1490233== possibly lost: 0 bytes in 0 blocks +==1490233== still reachable: 56 bytes in 3 blocks +==1490233== suppressed: 995,529 bytes in 13,911 blocks +==1490233== Reachable blocks (those to which a pointer was found) are not shown. +==1490233== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490233== +==1490233== For lists of detected and suppressed errors, rerun with: -s +==1490233== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 40) diff --git a/log-files/2024-02-21_13-45-57/TestCellProliferativeTypes_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellProliferativeTypes_valgrind.txt new file mode 100644 index 0000000000..0f4f51882e --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellProliferativeTypes_valgrind.txt @@ -0,0 +1,73 @@ +==1489815== Memcheck, a memory error detector +==1489815== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489815== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489815== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellProliferativeTypes -malloc_debug -malloc_dump -memory_info +==1489815== Parent PID: 1488630 +==1489815== +==1489815== +==1489815== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489815== Open file descriptor 12: +==1489815== at 0xE45307D: pipe (pipe.c:29) +==1489815== by 0x18A1D07D: ??? +==1489815== by 0x12F724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489815== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489815== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489815== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1489815== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489815== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489815== by 0x12CF1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489815== by 0x127E29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489815== by 0x12A848: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489815== by 0x12A6E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489815== by 0x12AD7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489815== by 0x126245: main (TestCellProliferativeTypes.cpp:19) +==1489815== +==1489815== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489815== at 0xE457A1C: __open_nocancel (open64_nocancel.c:39) +==1489815== by 0xE3DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489815== by 0xCBD4822: ??? +==1489815== by 0xCBD496F: ??? +==1489815== by 0x130176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489815== by 0x13017938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489815== by 0x12FCD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489815== by 0x12F722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489815== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489815== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489815== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1489815== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489815== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489815== by 0x12CF1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489815== by 0x127E29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489815== by 0x12A848: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489815== by 0x12A6E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489815== by 0x12AD7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489815== by 0x126245: main (TestCellProliferativeTypes.cpp:19) +==1489815== +==1489815== Open file descriptor 115: +==1489815== +==1489815== +==1489815== Open file descriptor 112: +==1489815== +==1489815== +==1489815== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellProliferativeTypes_valgrind.txt +==1489815== +==1489815== +==1489815== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489815== +==1489815== +==1489815== +==1489815== HEAP SUMMARY: +==1489815== in use at exit: 995,585 bytes in 13,914 blocks +==1489815== total heap usage: 65,503 allocs, 51,589 frees, 1,572,038,384 bytes allocated +==1489815== +==1489815== LEAK SUMMARY: +==1489815== definitely lost: 0 bytes in 0 blocks +==1489815== indirectly lost: 0 bytes in 0 blocks +==1489815== possibly lost: 0 bytes in 0 blocks +==1489815== still reachable: 56 bytes in 3 blocks +==1489815== suppressed: 995,529 bytes in 13,911 blocks +==1489815== Reachable blocks (those to which a pointer was found) are not shown. +==1489815== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489815== +==1489815== For lists of detected and suppressed errors, rerun with: -s +==1489815== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCellProperties_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellProperties_valgrind.txt new file mode 100644 index 0000000000..4525e1381d --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellProperties_valgrind.txt @@ -0,0 +1,73 @@ +==1506820== Memcheck, a memory error detector +==1506820== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506820== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506820== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCellProperties -malloc_debug -malloc_dump -memory_info +==1506820== Parent PID: 1488630 +==1506820== +==1506820== +==1506820== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506820== Open file descriptor 12: +==1506820== at 0x882607D: pipe (pipe.c:29) +==1506820== by 0x13F9607D: ??? +==1506820== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506820== by 0x9F21418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506820== by 0x9EBAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506820== by 0x8BB1D38: PetscInitialize (pinit.c:924) +==1506820== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506820== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506820== by 0x11C95A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506820== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506820== by 0x11A450: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506820== by 0x11A2F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506820== by 0x11A987: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506820== by 0x115CD5: main (TestCellProperties.cpp:19) +==1506820== +==1506820== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506820== at 0x882AA1C: __open_nocancel (open64_nocancel.c:39) +==1506820== by 0x87AEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506820== by 0x8486822: ??? +==1506820== by 0x848696F: ??? +==1506820== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506820== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506820== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506820== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506820== by 0x9F21418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506820== by 0x9EBAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506820== by 0x8BB1D38: PetscInitialize (pinit.c:924) +==1506820== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506820== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506820== by 0x11C95A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506820== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506820== by 0x11A450: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506820== by 0x11A2F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506820== by 0x11A987: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506820== by 0x115CD5: main (TestCellProperties.cpp:19) +==1506820== +==1506820== Open file descriptor 115: +==1506820== +==1506820== +==1506820== Open file descriptor 112: +==1506820== +==1506820== +==1506820== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellProperties_valgrind.txt +==1506820== +==1506820== +==1506820== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506820== +==1506820== +==1506820== +==1506820== HEAP SUMMARY: +==1506820== in use at exit: 995,510 bytes in 13,909 blocks +==1506820== total heap usage: 1,099,136 allocs, 1,085,227 frees, 1,693,713,038 bytes allocated +==1506820== +==1506820== LEAK SUMMARY: +==1506820== definitely lost: 0 bytes in 0 blocks +==1506820== indirectly lost: 0 bytes in 0 blocks +==1506820== possibly lost: 0 bytes in 0 blocks +==1506820== still reachable: 24 bytes in 2 blocks +==1506820== suppressed: 995,486 bytes in 13,907 blocks +==1506820== Reachable blocks (those to which a pointer was found) are not shown. +==1506820== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506820== +==1506820== For lists of detected and suppressed errors, rerun with: -s +==1506820== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestCellPropertyCollection_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellPropertyCollection_valgrind.txt new file mode 100644 index 0000000000..2d09968f96 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellPropertyCollection_valgrind.txt @@ -0,0 +1,73 @@ +==1489817== Memcheck, a memory error detector +==1489817== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489817== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489817== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPropertyCollection -malloc_debug -malloc_dump -memory_info +==1489817== Parent PID: 1488630 +==1489817== +==1489817== +==1489817== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489817== Open file descriptor 12: +==1489817== at 0xE45307D: pipe (pipe.c:29) +==1489817== by 0x18A1D07D: ??? +==1489817== by 0x12F724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489817== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489817== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489817== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1489817== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489817== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489817== by 0x1546B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489817== by 0x14F129: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489817== by 0x151D20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489817== by 0x151BC0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489817== by 0x152257: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489817== by 0x14D545: main (TestCellPropertyCollection.cpp:19) +==1489817== +==1489817== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489817== at 0xE457A1C: __open_nocancel (open64_nocancel.c:39) +==1489817== by 0xE3DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489817== by 0xCBD4822: ??? +==1489817== by 0xCBD496F: ??? +==1489817== by 0x130176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489817== by 0x13017938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489817== by 0x12FCD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489817== by 0x12F722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489817== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489817== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489817== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1489817== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489817== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489817== by 0x1546B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489817== by 0x14F129: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489817== by 0x151D20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489817== by 0x151BC0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489817== by 0x152257: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489817== by 0x14D545: main (TestCellPropertyCollection.cpp:19) +==1489817== +==1489817== Open file descriptor 115: +==1489817== +==1489817== +==1489817== Open file descriptor 112: +==1489817== +==1489817== +==1489817== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPropertyCollection_valgrind.txt +==1489817== +==1489817== +==1489817== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489817== +==1489817== +==1489817== +==1489817== HEAP SUMMARY: +==1489817== in use at exit: 995,585 bytes in 13,914 blocks +==1489817== total heap usage: 65,372 allocs, 51,458 frees, 1,571,961,950 bytes allocated +==1489817== +==1489817== LEAK SUMMARY: +==1489817== definitely lost: 0 bytes in 0 blocks +==1489817== indirectly lost: 0 bytes in 0 blocks +==1489817== possibly lost: 0 bytes in 0 blocks +==1489817== still reachable: 56 bytes in 3 blocks +==1489817== suppressed: 995,529 bytes in 13,911 blocks +==1489817== Reachable blocks (those to which a pointer was found) are not shown. +==1489817== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489817== +==1489817== For lists of detected and suppressed errors, rerun with: -s +==1489817== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCellPropertyRegistry_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellPropertyRegistry_valgrind.txt new file mode 100644 index 0000000000..ff2d47e902 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellPropertyRegistry_valgrind.txt @@ -0,0 +1,73 @@ +==1489838== Memcheck, a memory error detector +==1489838== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489838== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489838== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPropertyRegistry -malloc_debug -malloc_dump -memory_info +==1489838== Parent PID: 1488630 +==1489838== +==1489838== +==1489838== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489838== Open file descriptor 12: +==1489838== at 0xE45307D: pipe (pipe.c:29) +==1489838== by 0x18A1D07D: ??? +==1489838== by 0x12F724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489838== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489838== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489838== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1489838== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489838== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489838== by 0x15B69D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489838== by 0x156089: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489838== by 0x158D4C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489838== by 0x158BEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489838== by 0x159283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489838== by 0x1544A5: main (TestCellPropertyRegistry.cpp:19) +==1489838== +==1489838== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489838== at 0xE457A1C: __open_nocancel (open64_nocancel.c:39) +==1489838== by 0xE3DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489838== by 0xCBD4822: ??? +==1489838== by 0xCBD496F: ??? +==1489838== by 0x130176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489838== by 0x13017938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489838== by 0x12FCD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489838== by 0x12F722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489838== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489838== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489838== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1489838== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489838== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489838== by 0x15B69D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489838== by 0x156089: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489838== by 0x158D4C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489838== by 0x158BEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489838== by 0x159283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489838== by 0x1544A5: main (TestCellPropertyRegistry.cpp:19) +==1489838== +==1489838== Open file descriptor 115: +==1489838== +==1489838== +==1489838== Open file descriptor 112: +==1489838== +==1489838== +==1489838== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPropertyRegistry_valgrind.txt +==1489838== +==1489838== +==1489838== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489838== +==1489838== +==1489838== +==1489838== HEAP SUMMARY: +==1489838== in use at exit: 995,585 bytes in 13,914 blocks +==1489838== total heap usage: 65,412 allocs, 51,498 frees, 1,571,990,587 bytes allocated +==1489838== +==1489838== LEAK SUMMARY: +==1489838== definitely lost: 0 bytes in 0 blocks +==1489838== indirectly lost: 0 bytes in 0 blocks +==1489838== possibly lost: 0 bytes in 0 blocks +==1489838== still reachable: 56 bytes in 3 blocks +==1489838== suppressed: 995,529 bytes in 13,911 blocks +==1489838== Reachable blocks (those to which a pointer was found) are not shown. +==1489838== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489838== +==1489838== For lists of detected and suppressed errors, rerun with: -s +==1489838== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCellSrn_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellSrn_valgrind.txt new file mode 100644 index 0000000000..6242826154 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellSrn_valgrind.txt @@ -0,0 +1,73 @@ +==1489781== Memcheck, a memory error detector +==1489781== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489781== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489781== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellSrn -malloc_debug -malloc_dump -memory_info +==1489781== Parent PID: 1488630 +==1489781== +==1489781== +==1489781== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489781== Open file descriptor 12: +==1489781== at 0xE41107D: pipe (pipe.c:29) +==1489781== by 0x18A1D07D: ??? +==1489781== by 0x12F724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489781== by 0xE060418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489781== by 0xDFF9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489781== by 0xCCCAD38: PetscInitialize (pinit.c:924) +==1489781== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489781== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489781== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489781== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489781== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489781== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489781== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489781== by 0x113935: main (TestCellSrn.cpp:18) +==1489781== +==1489781== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489781== at 0xE415A1C: __open_nocancel (open64_nocancel.c:39) +==1489781== by 0xE399BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489781== by 0xDF54822: ??? +==1489781== by 0xDF5496F: ??? +==1489781== by 0x130176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489781== by 0x13017938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489781== by 0x12FCD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489781== by 0x12F722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489781== by 0xE060418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489781== by 0xDFF9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489781== by 0xCCCAD38: PetscInitialize (pinit.c:924) +==1489781== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489781== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489781== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489781== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489781== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489781== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489781== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489781== by 0x113935: main (TestCellSrn.cpp:18) +==1489781== +==1489781== Open file descriptor 115: +==1489781== +==1489781== +==1489781== Open file descriptor 112: +==1489781== +==1489781== +==1489781== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellSrn_valgrind.txt +==1489781== +==1489781== +==1489781== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489781== +==1489781== +==1489781== +==1489781== HEAP SUMMARY: +==1489781== in use at exit: 995,649 bytes in 13,915 blocks +==1489781== total heap usage: 75,467 allocs, 61,552 frees, 1,572,419,300 bytes allocated +==1489781== +==1489781== LEAK SUMMARY: +==1489781== definitely lost: 0 bytes in 0 blocks +==1489781== indirectly lost: 0 bytes in 0 blocks +==1489781== possibly lost: 0 bytes in 0 blocks +==1489781== still reachable: 120 bytes in 4 blocks +==1489781== suppressed: 995,529 bytes in 13,911 blocks +==1489781== Reachable blocks (those to which a pointer was found) are not shown. +==1489781== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489781== +==1489781== For lists of detected and suppressed errors, rerun with: -s +==1489781== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCellWriters_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellWriters_valgrind.txt new file mode 100644 index 0000000000..460ddd5a3a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellWriters_valgrind.txt @@ -0,0 +1,73 @@ +==1490266== Memcheck, a memory error detector +==1490266== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490266== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490266== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellWriters -malloc_debug -malloc_dump -memory_info +==1490266== Parent PID: 1488630 +==1490266== +==1490266== +==1490266== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490266== Open file descriptor 12: +==1490266== at 0xEE8007D: pipe (pipe.c:29) +==1490266== by 0x18A1E07D: ??? +==1490266== by 0x1402E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490266== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490266== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490266== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490266== by 0xE73D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490266== by 0xE73D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490266== by 0x1437DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490266== by 0x13BD1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490266== by 0x13EFFE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490266== by 0x13EE9E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490266== by 0x13F535: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490266== by 0x13A145: main (TestCellWriters.cpp:19) +==1490266== +==1490266== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490266== at 0xEE84A1C: __open_nocancel (open64_nocancel.c:39) +==1490266== by 0xEE08BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490266== by 0xE771822: ??? +==1490266== by 0xE77196F: ??? +==1490266== by 0x140D36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490266== by 0x140D3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490266== by 0x14089922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490266== by 0x1402E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490266== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490266== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490266== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490266== by 0xE73D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490266== by 0xE73D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490266== by 0x1437DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490266== by 0x13BD1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490266== by 0x13EFFE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490266== by 0x13EE9E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490266== by 0x13F535: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490266== by 0x13A145: main (TestCellWriters.cpp:19) +==1490266== +==1490266== Open file descriptor 115: +==1490266== +==1490266== +==1490266== Open file descriptor 112: +==1490266== +==1490266== +==1490266== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellWriters_valgrind.txt +==1490266== +==1490266== +==1490266== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490266== +==1490266== +==1490266== +==1490266== HEAP SUMMARY: +==1490266== in use at exit: 995,585 bytes in 13,914 blocks +==1490266== total heap usage: 76,683 allocs, 62,769 frees, 1,574,032,522 bytes allocated +==1490266== +==1490266== LEAK SUMMARY: +==1490266== definitely lost: 0 bytes in 0 blocks +==1490266== indirectly lost: 0 bytes in 0 blocks +==1490266== possibly lost: 0 bytes in 0 blocks +==1490266== still reachable: 56 bytes in 3 blocks +==1490266== suppressed: 995,529 bytes in 13,911 blocks +==1490266== Reachable blocks (those to which a pointer was found) are not shown. +==1490266== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490266== +==1490266== For lists of detected and suppressed errors, rerun with: -s +==1490266== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 40) diff --git a/log-files/2024-02-21_13-45-57/TestCell_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCell_valgrind.txt new file mode 100644 index 0000000000..8061f395eb --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCell_valgrind.txt @@ -0,0 +1,73 @@ +==1489772== Memcheck, a memory error detector +==1489772== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489772== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489772== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCell -malloc_debug -malloc_dump -memory_info +==1489772== Parent PID: 1488630 +==1489772== +==1489772== +==1489772== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489772== Open file descriptor 12: +==1489772== at 0xE41107D: pipe (pipe.c:29) +==1489772== by 0x18A1D07D: ??? +==1489772== by 0x12F724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489772== by 0xE060418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489772== by 0xDFF9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489772== by 0xCCCAD38: PetscInitialize (pinit.c:924) +==1489772== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489772== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489772== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489772== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489772== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489772== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489772== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489772== by 0x1222F5: main (TestCell.cpp:19) +==1489772== +==1489772== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489772== at 0xE415A1C: __open_nocancel (open64_nocancel.c:39) +==1489772== by 0xE399BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489772== by 0xDF54822: ??? +==1489772== by 0xDF5496F: ??? +==1489772== by 0x130176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489772== by 0x13017938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489772== by 0x12FCD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489772== by 0x12F722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489772== by 0xE060418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489772== by 0xDFF9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489772== by 0xCCCAD38: PetscInitialize (pinit.c:924) +==1489772== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489772== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489772== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489772== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489772== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489772== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489772== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489772== by 0x1222F5: main (TestCell.cpp:19) +==1489772== +==1489772== Open file descriptor 115: +==1489772== +==1489772== +==1489772== Open file descriptor 112: +==1489772== +==1489772== +==1489772== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCell_valgrind.txt +==1489772== +==1489772== +==1489772== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489772== +==1489772== +==1489772== +==1489772== HEAP SUMMARY: +==1489772== in use at exit: 995,654 bytes in 13,911 blocks +==1489772== total heap usage: 5,195,473 allocs, 5,181,562 frees, 2,052,211,377 bytes allocated +==1489772== +==1489772== LEAK SUMMARY: +==1489772== definitely lost: 0 bytes in 0 blocks +==1489772== indirectly lost: 0 bytes in 0 blocks +==1489772== possibly lost: 0 bytes in 0 blocks +==1489772== still reachable: 184 bytes in 4 blocks +==1489772== suppressed: 995,470 bytes in 13,907 blocks +==1489772== Reachable blocks (those to which a pointer was found) are not shown. +==1489772== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489772== +==1489772== For lists of detected and suppressed errors, rerun with: -s +==1489772== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestCellsGenerator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellsGenerator_valgrind.txt new file mode 100644 index 0000000000..7ebe67e434 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==1489845== Memcheck, a memory error detector +==1489845== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489845== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489845== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellsGenerator -malloc_debug -malloc_dump -memory_info +==1489845== Parent PID: 1488630 +==1489845== +==1489845== +==1489845== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489845== Open file descriptor 12: +==1489845== at 0xEB6A07D: pipe (pipe.c:29) +==1489845== by 0x18A1D07D: ??? +==1489845== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489845== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489845== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489845== by 0xF49BD38: PetscInitialize (pinit.c:924) +==1489845== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489845== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489845== by 0x1248EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489845== by 0x11F90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489845== by 0x122428: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489845== by 0x1222C8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489845== by 0x12295F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489845== by 0x11DD35: main (TestCellsGenerator.cpp:19) +==1489845== +==1489845== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489845== at 0xEB6EA1C: __open_nocancel (open64_nocancel.c:39) +==1489845== by 0xEAF2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489845== by 0xE49F822: ??? +==1489845== by 0xE49F96F: ??? +==1489845== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489845== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489845== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489845== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489845== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489845== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489845== by 0xF49BD38: PetscInitialize (pinit.c:924) +==1489845== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489845== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489845== by 0x1248EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489845== by 0x11F90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489845== by 0x122428: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489845== by 0x1222C8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489845== by 0x12295F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489845== by 0x11DD35: main (TestCellsGenerator.cpp:19) +==1489845== +==1489845== Open file descriptor 115: +==1489845== +==1489845== +==1489845== Open file descriptor 112: +==1489845== +==1489845== +==1489845== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellsGenerator_valgrind.txt +==1489845== +==1489845== +==1489845== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489845== +==1489845== +==1489845== +==1489845== HEAP SUMMARY: +==1489845== in use at exit: 995,649 bytes in 13,915 blocks +==1489845== total heap usage: 81,534 allocs, 67,619 frees, 1,573,736,938 bytes allocated +==1489845== +==1489845== LEAK SUMMARY: +==1489845== definitely lost: 0 bytes in 0 blocks +==1489845== indirectly lost: 0 bytes in 0 blocks +==1489845== possibly lost: 0 bytes in 0 blocks +==1489845== still reachable: 120 bytes in 4 blocks +==1489845== suppressed: 995,529 bytes in 13,911 blocks +==1489845== Reachable blocks (those to which a pointer was found) are not shown. +==1489845== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489845== +==1489845== For lists of detected and suppressed errors, rerun with: -s +==1489845== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCellwiseDataGradient_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCellwiseDataGradient_valgrind.txt new file mode 100644 index 0000000000..9aed413c0c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCellwiseDataGradient_valgrind.txt @@ -0,0 +1,73 @@ +==1490254== Memcheck, a memory error detector +==1490254== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490254== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490254== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellwiseDataGradient -malloc_debug -malloc_dump -memory_info +==1490254== Parent PID: 1488630 +==1490254== +==1490254== +==1490254== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490254== Open file descriptor 12: +==1490254== at 0xEB6A07D: pipe (pipe.c:29) +==1490254== by 0x18A1D07D: ??? +==1490254== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490254== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490254== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490254== by 0xF49BD38: PetscInitialize (pinit.c:924) +==1490254== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490254== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490254== by 0x11DD52: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490254== by 0x119493: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490254== by 0x11B86C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490254== by 0x11B767: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490254== by 0x11BD7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490254== by 0x117C95: main (TestCellwiseDataGradient.cpp:18) +==1490254== +==1490254== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490254== at 0xEB6EA1C: __open_nocancel (open64_nocancel.c:39) +==1490254== by 0xEAF2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490254== by 0xE49F822: ??? +==1490254== by 0xE49F96F: ??? +==1490254== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490254== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490254== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490254== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490254== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490254== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490254== by 0xF49BD38: PetscInitialize (pinit.c:924) +==1490254== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490254== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490254== by 0x11DD52: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490254== by 0x119493: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490254== by 0x11B86C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490254== by 0x11B767: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490254== by 0x11BD7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490254== by 0x117C95: main (TestCellwiseDataGradient.cpp:18) +==1490254== +==1490254== Open file descriptor 115: +==1490254== +==1490254== +==1490254== Open file descriptor 112: +==1490254== +==1490254== +==1490254== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellwiseDataGradient_valgrind.txt +==1490254== +==1490254== +==1490254== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490254== +==1490254== +==1490254== +==1490254== HEAP SUMMARY: +==1490254== in use at exit: 995,585 bytes in 13,914 blocks +==1490254== total heap usage: 430,977 allocs, 417,063 frees, 1,586,687,653 bytes allocated +==1490254== +==1490254== LEAK SUMMARY: +==1490254== definitely lost: 0 bytes in 0 blocks +==1490254== indirectly lost: 0 bytes in 0 blocks +==1490254== possibly lost: 0 bytes in 0 blocks +==1490254== still reachable: 56 bytes in 3 blocks +==1490254== suppressed: 995,529 bytes in 13,911 blocks +==1490254== Reachable blocks (those to which a pointer was found) are not shown. +==1490254== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490254== +==1490254== For lists of detected and suppressed errors, rerun with: -s +==1490254== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCentreBasedDivisionRules_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCentreBasedDivisionRules_valgrind.txt new file mode 100644 index 0000000000..13390cb99e --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCentreBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==1490268== Memcheck, a memory error detector +==1490268== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490268== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490268== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCentreBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==1490268== Parent PID: 1488630 +==1490268== +==1490268== +==1490268== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490268== Open file descriptor 12: +==1490268== at 0x1014A07D: pipe (pipe.c:29) +==1490268== by 0x18A1D07D: ??? +==1490268== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490268== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490268== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490268== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1490268== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490268== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490268== by 0x140B79: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490268== by 0x13BAA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490268== by 0x13E124: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490268== by 0x13E020: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490268== by 0x13E633: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490268== by 0x13A2A5: main (TestCentreBasedDivisionRules.cpp:18) +==1490268== +==1490268== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490268== at 0x1014EA1C: __open_nocancel (open64_nocancel.c:39) +==1490268== by 0x100D2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490268== by 0xE49F822: ??? +==1490268== by 0xE49F96F: ??? +==1490268== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490268== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490268== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490268== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490268== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490268== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490268== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1490268== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490268== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490268== by 0x140B79: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490268== by 0x13BAA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490268== by 0x13E124: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490268== by 0x13E020: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490268== by 0x13E633: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490268== by 0x13A2A5: main (TestCentreBasedDivisionRules.cpp:18) +==1490268== +==1490268== Open file descriptor 115: +==1490268== +==1490268== +==1490268== Open file descriptor 112: +==1490268== +==1490268== +==1490268== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCentreBasedDivisionRules_valgrind.txt +==1490268== +==1490268== +==1490268== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490268== +==1490268== +==1490268== +==1490268== HEAP SUMMARY: +==1490268== in use at exit: 995,585 bytes in 13,914 blocks +==1490268== total heap usage: 70,663 allocs, 56,749 frees, 1,572,913,797 bytes allocated +==1490268== +==1490268== LEAK SUMMARY: +==1490268== definitely lost: 0 bytes in 0 blocks +==1490268== indirectly lost: 0 bytes in 0 blocks +==1490268== possibly lost: 0 bytes in 0 blocks +==1490268== still reachable: 56 bytes in 3 blocks +==1490268== suppressed: 995,529 bytes in 13,911 blocks +==1490268== Reachable blocks (those to which a pointer was found) are not shown. +==1490268== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490268== +==1490268== For lists of detected and suppressed errors, rerun with: -s +==1490268== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestChasteBuildInfo_valgrind.txt b/log-files/2024-02-21_13-45-57/TestChasteBuildInfo_valgrind.txt new file mode 100644 index 0000000000..db061d0eb5 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestChasteBuildInfo_valgrind.txt @@ -0,0 +1,73 @@ +==1488636== Memcheck, a memory error detector +==1488636== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488636== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488636== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestChasteBuildInfo -malloc_debug -malloc_dump -memory_info +==1488636== Parent PID: 1488630 +==1488636== +==1488636== +==1488636== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488636== Open file descriptor 12: +==1488636== at 0x616B07D: pipe (pipe.c:29) +==1488636== by 0xAEA607D: ??? +==1488636== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488636== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488636== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488636== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488636== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488636== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488636== by 0x111D89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488636== by 0x10DC93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488636== by 0x10FE44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488636== by 0x10FD40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488636== by 0x110353: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488636== by 0x10C495: main (TestChasteBuildInfo.cpp:18) +==1488636== +==1488636== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488636== at 0x616FA1C: __open_nocancel (open64_nocancel.c:39) +==1488636== by 0x60F3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488636== by 0x5CAC822: ??? +==1488636== by 0x5CAC96F: ??? +==1488636== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488636== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488636== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488636== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488636== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488636== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488636== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488636== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488636== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488636== by 0x111D89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488636== by 0x10DC93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488636== by 0x10FE44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488636== by 0x10FD40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488636== by 0x110353: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488636== by 0x10C495: main (TestChasteBuildInfo.cpp:18) +==1488636== +==1488636== Open file descriptor 115: +==1488636== +==1488636== +==1488636== Open file descriptor 112: +==1488636== +==1488636== +==1488636== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChasteBuildInfo_valgrind.txt +==1488636== +==1488636== +==1488636== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488636== +==1488636== +==1488636== +==1488636== HEAP SUMMARY: +==1488636== in use at exit: 995,073 bytes in 13,913 blocks +==1488636== total heap usage: 57,582 allocs, 43,669 frees, 1,571,243,393 bytes allocated +==1488636== +==1488636== LEAK SUMMARY: +==1488636== definitely lost: 0 bytes in 0 blocks +==1488636== indirectly lost: 0 bytes in 0 blocks +==1488636== possibly lost: 0 bytes in 0 blocks +==1488636== still reachable: 24 bytes in 2 blocks +==1488636== suppressed: 995,049 bytes in 13,911 blocks +==1488636== Reachable blocks (those to which a pointer was found) are not shown. +==1488636== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488636== +==1488636== For lists of detected and suppressed errors, rerun with: -s +==1488636== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestChastePoint_valgrind.txt b/log-files/2024-02-21_13-45-57/TestChastePoint_valgrind.txt new file mode 100644 index 0000000000..b280168ff6 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestChastePoint_valgrind.txt @@ -0,0 +1,73 @@ +==1489001== Memcheck, a memory error detector +==1489001== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489001== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489001== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestChastePoint -malloc_debug -malloc_dump -memory_info +==1489001== Parent PID: 1488630 +==1489001== +==1489001== +==1489001== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489001== Open file descriptor 12: +==1489001== at 0x7A7607D: pipe (pipe.c:29) +==1489001== by 0xFD3207D: ??? +==1489001== by 0xB6794CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489001== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489001== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489001== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489001== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489001== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489001== by 0x1434C7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489001== by 0x13DFC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489001== by 0x140D84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489001== by 0x140C24: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489001== by 0x1412BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489001== by 0x13C3E5: main (TestChastePoint.cpp:19) +==1489001== +==1489001== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489001== at 0x7A7AA1C: __open_nocancel (open64_nocancel.c:39) +==1489001== by 0x79FEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489001== by 0x61F7822: ??? +==1489001== by 0x61F796F: ??? +==1489001== by 0xB71E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489001== by 0xB71E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489001== by 0xB6D4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489001== by 0xB6792DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489001== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489001== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489001== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489001== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489001== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489001== by 0x1434C7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489001== by 0x13DFC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489001== by 0x140D84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489001== by 0x140C24: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489001== by 0x1412BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489001== by 0x13C3E5: main (TestChastePoint.cpp:19) +==1489001== +==1489001== Open file descriptor 115: +==1489001== +==1489001== +==1489001== Open file descriptor 112: +==1489001== +==1489001== +==1489001== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChastePoint_valgrind.txt +==1489001== +==1489001== +==1489001== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489001== +==1489001== +==1489001== +==1489001== HEAP SUMMARY: +==1489001== in use at exit: 995,457 bytes in 13,913 blocks +==1489001== total heap usage: 59,909 allocs, 45,996 frees, 1,571,472,248 bytes allocated +==1489001== +==1489001== LEAK SUMMARY: +==1489001== definitely lost: 0 bytes in 0 blocks +==1489001== indirectly lost: 0 bytes in 0 blocks +==1489001== possibly lost: 0 bytes in 0 blocks +==1489001== still reachable: 24 bytes in 2 blocks +==1489001== suppressed: 995,433 bytes in 13,911 blocks +==1489001== Reachable blocks (those to which a pointer was found) are not shown. +==1489001== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489001== +==1489001== For lists of detected and suppressed errors, rerun with: -s +==1489001== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestChasteRegions_valgrind.txt b/log-files/2024-02-21_13-45-57/TestChasteRegions_valgrind.txt new file mode 100644 index 0000000000..12f00963e0 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestChasteRegions_valgrind.txt @@ -0,0 +1,73 @@ +==1489002== Memcheck, a memory error detector +==1489002== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489002== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489002== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestChasteRegions -malloc_debug -malloc_dump -memory_info +==1489002== Parent PID: 1488630 +==1489002== +==1489002== +==1489002== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489002== Open file descriptor 12: +==1489002== at 0x66A807D: pipe (pipe.c:29) +==1489002== by 0xFD3207D: ??? +==1489002== by 0xB6794CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489002== by 0x7CB2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489002== by 0x7C4BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489002== by 0x6942D38: PetscInitialize (pinit.c:924) +==1489002== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489002== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489002== by 0x127EAE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489002== by 0x122DBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489002== by 0x12589A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489002== by 0x12573A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489002== by 0x125DD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489002== by 0x1211E5: main (TestChasteRegions.cpp:19) +==1489002== +==1489002== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489002== at 0x66ACA1C: __open_nocancel (open64_nocancel.c:39) +==1489002== by 0x6630BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489002== by 0x61F7822: ??? +==1489002== by 0x61F796F: ??? +==1489002== by 0xB71E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489002== by 0xB71E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489002== by 0xB6D4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489002== by 0xB6792DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489002== by 0x7CB2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489002== by 0x7C4BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489002== by 0x6942D38: PetscInitialize (pinit.c:924) +==1489002== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489002== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489002== by 0x127EAE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489002== by 0x122DBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489002== by 0x12589A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489002== by 0x12573A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489002== by 0x125DD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489002== by 0x1211E5: main (TestChasteRegions.cpp:19) +==1489002== +==1489002== Open file descriptor 115: +==1489002== +==1489002== +==1489002== Open file descriptor 112: +==1489002== +==1489002== +==1489002== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChasteRegions_valgrind.txt +==1489002== +==1489002== +==1489002== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489002== +==1489002== +==1489002== +==1489002== HEAP SUMMARY: +==1489002== in use at exit: 995,457 bytes in 13,913 blocks +==1489002== total heap usage: 60,007 allocs, 46,094 frees, 1,571,479,384 bytes allocated +==1489002== +==1489002== LEAK SUMMARY: +==1489002== definitely lost: 0 bytes in 0 blocks +==1489002== indirectly lost: 0 bytes in 0 blocks +==1489002== possibly lost: 0 bytes in 0 blocks +==1489002== still reachable: 24 bytes in 2 blocks +==1489002== suppressed: 995,433 bytes in 13,911 blocks +==1489002== Reachable blocks (those to which a pointer was found) are not shown. +==1489002== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489002== +==1489002== For lists of detected and suppressed errors, rerun with: -s +==1489002== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestChebyshevIteration_valgrind.txt b/log-files/2024-02-21_13-45-57/TestChebyshevIteration_valgrind.txt new file mode 100644 index 0000000000..67754402eb --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestChebyshevIteration_valgrind.txt @@ -0,0 +1,73 @@ +==1488927== Memcheck, a memory error detector +==1488927== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488927== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488927== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestChebyshevIteration -malloc_debug -malloc_dump -memory_info +==1488927== Parent PID: 1488630 +==1488927== +==1488927== +==1488927== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488927== Open file descriptor 12: +==1488927== at 0x60C307D: pipe (pipe.c:29) +==1488927== by 0xAF3A07D: ??? +==1488927== by 0x8A4D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488927== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488927== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488927== by 0x4AB1D38: PetscInitialize (pinit.c:924) +==1488927== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488927== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488927== by 0x115156: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488927== by 0x11068D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488927== by 0x112F8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488927== by 0x112E2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488927== by 0x1134C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488927== by 0x10EAB5: main (TestChebyshevIteration.cpp:19) +==1488927== +==1488927== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488927== at 0x60C7A1C: __open_nocancel (open64_nocancel.c:39) +==1488927== by 0x604BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488927== by 0x5D3B822: ??? +==1488927== by 0x5D3B96F: ??? +==1488927== by 0x8AF46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488927== by 0x8AF4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488927== by 0x8AAA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488927== by 0x8A4D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488927== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488927== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488927== by 0x4AB1D38: PetscInitialize (pinit.c:924) +==1488927== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488927== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488927== by 0x115156: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488927== by 0x11068D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488927== by 0x112F8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488927== by 0x112E2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488927== by 0x1134C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488927== by 0x10EAB5: main (TestChebyshevIteration.cpp:19) +==1488927== +==1488927== Open file descriptor 115: +==1488927== +==1488927== +==1488927== Open file descriptor 112: +==1488927== +==1488927== +==1488927== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChebyshevIteration_valgrind.txt +==1488927== +==1488927== +==1488927== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488927== +==1488927== +==1488927== +==1488927== HEAP SUMMARY: +==1488927== in use at exit: 995,089 bytes in 13,913 blocks +==1488927== total heap usage: 61,817 allocs, 47,904 frees, 1,590,817,672 bytes allocated +==1488927== +==1488927== LEAK SUMMARY: +==1488927== definitely lost: 0 bytes in 0 blocks +==1488927== indirectly lost: 0 bytes in 0 blocks +==1488927== possibly lost: 0 bytes in 0 blocks +==1488927== still reachable: 24 bytes in 2 blocks +==1488927== suppressed: 995,065 bytes in 13,911 blocks +==1488927== Reachable blocks (those to which a pointer was found) are not shown. +==1488927== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488927== +==1488927== For lists of detected and suppressed errors, rerun with: -s +==1488927== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-02-21_13-45-57/TestCheckpointing_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCheckpointing_valgrind.txt new file mode 100644 index 0000000000..71e83023d6 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCheckpointing_valgrind.txt @@ -0,0 +1,73 @@ +==1506952== Memcheck, a memory error detector +==1506952== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506952== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506952== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCheckpointing -malloc_debug -malloc_dump -memory_info +==1506952== Parent PID: 1488630 +==1506952== +==1506952== +==1506952== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506952== Open file descriptor 12: +==1506952== at 0xA43607D: pipe (pipe.c:29) +==1506952== by 0x13F9607D: ??? +==1506952== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506952== by 0xBB2F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506952== by 0xBAC8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506952== by 0xA7BFD38: PetscInitialize (pinit.c:924) +==1506952== by 0x9D1B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506952== by 0x9D1B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506952== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506952== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506952== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506952== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506952== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506952== by 0x11CCF5: main (TestCheckpointing.cpp:18) +==1506952== +==1506952== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506952== at 0xA43AA1C: __open_nocancel (open64_nocancel.c:39) +==1506952== by 0xA3BEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506952== by 0x9D4F822: ??? +==1506952== by 0x9D4F96F: ??? +==1506952== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506952== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506952== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506952== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506952== by 0xBB2F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506952== by 0xBAC8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506952== by 0xA7BFD38: PetscInitialize (pinit.c:924) +==1506952== by 0x9D1B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506952== by 0x9D1B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506952== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506952== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506952== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506952== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506952== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506952== by 0x11CCF5: main (TestCheckpointing.cpp:18) +==1506952== +==1506952== Open file descriptor 115: +==1506952== +==1506952== +==1506952== Open file descriptor 112: +==1506952== +==1506952== +==1506952== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCheckpointing_valgrind.txt +==1506952== +==1506952== +==1506952== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506952== +==1506952== +==1506952== +==1506952== HEAP SUMMARY: +==1506952== in use at exit: 995,990 bytes in 13,919 blocks +==1506952== total heap usage: 847,691 allocs, 833,772 frees, 1,676,820,813 bytes allocated +==1506952== +==1506952== LEAK SUMMARY: +==1506952== definitely lost: 0 bytes in 0 blocks +==1506952== indirectly lost: 0 bytes in 0 blocks +==1506952== possibly lost: 0 bytes in 0 blocks +==1506952== still reachable: 24 bytes in 2 blocks +==1506952== suppressed: 995,966 bytes in 13,917 blocks +==1506952== Reachable blocks (those to which a pointer was found) are not shown. +==1506952== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506952== +==1506952== For lists of detected and suppressed errors, rerun with: -s +==1506952== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 60 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestCitations_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCitations_valgrind.txt new file mode 100644 index 0000000000..d444f53693 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCitations_valgrind.txt @@ -0,0 +1,79 @@ +==1488633== Memcheck, a memory error detector +==1488633== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488633== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488633== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCitations -malloc_debug -malloc_dump -memory_info +==1488633== Parent PID: 1488630 +==1488633== +==1488633== +==1488633== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488633== Open file descriptor 12: +==1488633== at 0x4CB407D: pipe (pipe.c:29) +==1488633== by 0xAEA607D: ??? +==1488633== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488633== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488633== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488633== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488633== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488633== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488633== by 0x11862B: TestCitations::TestChasteCitation() (TestCitations.hpp:72) +==1488633== by 0x118ED8: TestDescription_TestCitations_TestChasteCitation::runTest() (TestCitations.cpp:30) +==1488633== by 0x111C4A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==1488633== by 0x114E74: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==1488633== by 0x114D59: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==1488633== by 0x114BFF: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==1488633== by 0x114AC1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488633== by 0x1150D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488633== by 0x110C15: main (TestCitations.cpp:18) +==1488633== +==1488633== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488633== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==1488633== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488633== by 0x492E822: ??? +==1488633== by 0x492E96F: ??? +==1488633== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488633== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488633== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488633== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488633== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488633== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488633== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488633== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488633== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488633== by 0x11862B: TestCitations::TestChasteCitation() (TestCitations.hpp:72) +==1488633== by 0x118ED8: TestDescription_TestCitations_TestChasteCitation::runTest() (TestCitations.cpp:30) +==1488633== by 0x111C4A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==1488633== by 0x114E74: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==1488633== by 0x114D59: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==1488633== by 0x114BFF: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==1488633== by 0x114AC1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488633== by 0x1150D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488633== by 0x110C15: main (TestCitations.cpp:18) +==1488633== +==1488633== Open file descriptor 115: +==1488633== +==1488633== +==1488633== Open file descriptor 112: +==1488633== +==1488633== +==1488633== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCitations_valgrind.txt +==1488633== +==1488633== +==1488633== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488633== +==1488633== +==1488633== +==1488633== HEAP SUMMARY: +==1488633== in use at exit: 995,073 bytes in 13,913 blocks +==1488633== total heap usage: 57,874 allocs, 43,961 frees, 1,571,403,008 bytes allocated +==1488633== +==1488633== LEAK SUMMARY: +==1488633== definitely lost: 0 bytes in 0 blocks +==1488633== indirectly lost: 0 bytes in 0 blocks +==1488633== possibly lost: 0 bytes in 0 blocks +==1488633== still reachable: 24 bytes in 2 blocks +==1488633== suppressed: 995,049 bytes in 13,911 blocks +==1488633== Reachable blocks (those to which a pointer was found) are not shown. +==1488633== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488633== +==1488633== For lists of detected and suppressed errors, rerun with: -s +==1488633== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestCodegenPresent_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCodegenPresent_valgrind.txt new file mode 100644 index 0000000000..10187fa9ac --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCodegenPresent_valgrind.txt @@ -0,0 +1,73 @@ +==1505901== Memcheck, a memory error detector +==1505901== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505901== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505901== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCodegenPresent -malloc_debug -malloc_dump -memory_info +==1505901== Parent PID: 1488630 +==1505901== +==1505901== +==1505901== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505901== Open file descriptor 12: +==1505901== at 0x616B07D: pipe (pipe.c:29) +==1505901== by 0xAEA607D: ??? +==1505901== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505901== by 0x5DBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505901== by 0x5D53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505901== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1505901== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505901== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505901== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505901== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505901== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505901== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505901== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505901== by 0x10C695: main (TestCodegenPresent.cpp:18) +==1505901== +==1505901== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505901== at 0x616FA1C: __open_nocancel (open64_nocancel.c:39) +==1505901== by 0x60F3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505901== by 0x5CAC822: ??? +==1505901== by 0x5CAC96F: ??? +==1505901== by 0x8A656DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505901== by 0x8A65938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505901== by 0x8A1B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505901== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505901== by 0x5DBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505901== by 0x5D53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505901== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1505901== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505901== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505901== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505901== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505901== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505901== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505901== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505901== by 0x10C695: main (TestCodegenPresent.cpp:18) +==1505901== +==1505901== Open file descriptor 115: +==1505901== +==1505901== +==1505901== Open file descriptor 112: +==1505901== +==1505901== +==1505901== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCodegenPresent_valgrind.txt +==1505901== +==1505901== +==1505901== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505901== +==1505901== +==1505901== +==1505901== HEAP SUMMARY: +==1505901== in use at exit: 995,073 bytes in 13,913 blocks +==1505901== total heap usage: 57,581 allocs, 43,668 frees, 1,571,239,137 bytes allocated +==1505901== +==1505901== LEAK SUMMARY: +==1505901== definitely lost: 0 bytes in 0 blocks +==1505901== indirectly lost: 0 bytes in 0 blocks +==1505901== possibly lost: 0 bytes in 0 blocks +==1505901== still reachable: 24 bytes in 2 blocks +==1505901== suppressed: 995,049 bytes in 13,911 blocks +==1505901== Reachable blocks (those to which a pointer was found) are not shown. +==1505901== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505901== +==1505901== For lists of detected and suppressed errors, rerun with: -s +==1505901== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestColumnDataReaderWriter_valgrind.txt b/log-files/2024-02-21_13-45-57/TestColumnDataReaderWriter_valgrind.txt new file mode 100644 index 0000000000..5b02bc55b0 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestColumnDataReaderWriter_valgrind.txt @@ -0,0 +1,73 @@ +==1488857== Memcheck, a memory error detector +==1488857== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488857== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488857== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestColumnDataReaderWriter -malloc_debug -malloc_dump -memory_info +==1488857== Parent PID: 1488630 +==1488857== +==1488857== +==1488857== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488857== Open file descriptor 12: +==1488857== at 0x61DE07D: pipe (pipe.c:29) +==1488857== by 0xAF1907D: ??? +==1488857== by 0x8A314CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488857== by 0x5E2D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488857== by 0x5DC6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488857== by 0x4A95D38: PetscInitialize (pinit.c:924) +==1488857== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488857== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488857== by 0x11A4DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488857== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488857== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488857== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488857== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488857== by 0x113AF5: main (TestColumnDataReaderWriter.cpp:19) +==1488857== +==1488857== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488857== at 0x61E2A1C: __open_nocancel (open64_nocancel.c:39) +==1488857== by 0x6166BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488857== by 0x5D1F822: ??? +==1488857== by 0x5D1F96F: ??? +==1488857== by 0x8AD86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488857== by 0x8AD8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488857== by 0x8A8E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488857== by 0x8A312DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488857== by 0x5E2D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488857== by 0x5DC6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488857== by 0x4A95D38: PetscInitialize (pinit.c:924) +==1488857== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488857== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488857== by 0x11A4DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488857== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488857== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488857== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488857== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488857== by 0x113AF5: main (TestColumnDataReaderWriter.cpp:19) +==1488857== +==1488857== Open file descriptor 115: +==1488857== +==1488857== +==1488857== Open file descriptor 112: +==1488857== +==1488857== +==1488857== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestColumnDataReaderWriter_valgrind.txt +==1488857== +==1488857== +==1488857== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488857== +==1488857== +==1488857== +==1488857== HEAP SUMMARY: +==1488857== in use at exit: 995,089 bytes in 13,913 blocks +==1488857== total heap usage: 74,584 allocs, 60,671 frees, 1,574,309,038 bytes allocated +==1488857== +==1488857== LEAK SUMMARY: +==1488857== definitely lost: 0 bytes in 0 blocks +==1488857== indirectly lost: 0 bytes in 0 blocks +==1488857== possibly lost: 0 bytes in 0 blocks +==1488857== still reachable: 24 bytes in 2 blocks +==1488857== suppressed: 995,065 bytes in 13,911 blocks +==1488857== Reachable blocks (those to which a pointer was found) are not shown. +==1488857== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488857== +==1488857== For lists of detected and suppressed errors, rerun with: -s +==1488857== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestCombinedOdeSystem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCombinedOdeSystem_valgrind.txt new file mode 100644 index 0000000000..3693fb5097 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCombinedOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==1489401== Memcheck, a memory error detector +==1489401== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489401== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489401== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestCombinedOdeSystem -malloc_debug -malloc_dump -memory_info +==1489401== Parent PID: 1488630 +==1489401== +==1489401== +==1489401== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489401== Open file descriptor 12: +==1489401== at 0x4F1307D: pipe (pipe.c:29) +==1489401== by 0xB1E807D: ??? +==1489401== by 0x8CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489401== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489401== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489401== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489401== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489401== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489401== by 0x11FE4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489401== by 0x11AEED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489401== by 0x11DACC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489401== by 0x11D9C7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489401== by 0x11DFDB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489401== by 0x118A75: main (TestCombinedOdeSystem.cpp:18) +==1489401== +==1489401== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489401== at 0x4F17A1C: __open_nocancel (open64_nocancel.c:39) +==1489401== by 0x4E9BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489401== by 0x4B71822: ??? +==1489401== by 0x4B7196F: ??? +==1489401== by 0x8D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489401== by 0x8D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489401== by 0x8D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489401== by 0x8CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489401== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489401== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489401== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489401== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489401== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489401== by 0x11FE4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489401== by 0x11AEED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489401== by 0x11DACC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489401== by 0x11D9C7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489401== by 0x11DFDB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489401== by 0x118A75: main (TestCombinedOdeSystem.cpp:18) +==1489401== +==1489401== Open file descriptor 115: +==1489401== +==1489401== +==1489401== Open file descriptor 112: +==1489401== +==1489401== +==1489401== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCombinedOdeSystem_valgrind.txt +==1489401== +==1489401== +==1489401== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489401== +==1489401== +==1489401== +==1489401== HEAP SUMMARY: +==1489401== in use at exit: 995,137 bytes in 13,913 blocks +==1489401== total heap usage: 58,746 allocs, 44,833 frees, 1,571,336,962 bytes allocated +==1489401== +==1489401== LEAK SUMMARY: +==1489401== definitely lost: 0 bytes in 0 blocks +==1489401== indirectly lost: 0 bytes in 0 blocks +==1489401== possibly lost: 0 bytes in 0 blocks +==1489401== still reachable: 24 bytes in 2 blocks +==1489401== suppressed: 995,113 bytes in 13,911 blocks +==1489401== Reachable blocks (those to which a pointer was found) are not shown. +==1489401== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489401== +==1489401== For lists of detected and suppressed errors, rerun with: -s +==1489401== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestCommandLineArguments_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCommandLineArguments_valgrind.txt new file mode 100644 index 0000000000..f8dcb3df2e --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCommandLineArguments_valgrind.txt @@ -0,0 +1,73 @@ +==1488634== Memcheck, a memory error detector +==1488634== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488634== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488634== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCommandLineArguments -malloc_debug -malloc_dump -memory_info +==1488634== Parent PID: 1488630 +==1488634== +==1488634== +==1488634== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488634== Open file descriptor 12: +==1488634== at 0x4CB407D: pipe (pipe.c:29) +==1488634== by 0xAEA607D: ??? +==1488634== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488634== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488634== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488634== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488634== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488634== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488634== by 0x115FD0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488634== by 0x11158D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488634== by 0x114072: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488634== by 0x113F12: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488634== by 0x1145A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488634== by 0x10F9B5: main (TestCommandLineArguments.cpp:19) +==1488634== +==1488634== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488634== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==1488634== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488634== by 0x492E822: ??? +==1488634== by 0x492E96F: ??? +==1488634== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488634== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488634== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488634== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488634== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488634== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488634== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488634== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488634== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488634== by 0x115FD0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488634== by 0x11158D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488634== by 0x114072: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488634== by 0x113F12: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488634== by 0x1145A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488634== by 0x10F9B5: main (TestCommandLineArguments.cpp:19) +==1488634== +==1488634== Open file descriptor 115: +==1488634== +==1488634== +==1488634== Open file descriptor 112: +==1488634== +==1488634== +==1488634== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCommandLineArguments_valgrind.txt +==1488634== +==1488634== +==1488634== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488634== +==1488634== +==1488634== +==1488634== HEAP SUMMARY: +==1488634== in use at exit: 995,073 bytes in 13,913 blocks +==1488634== total heap usage: 57,758 allocs, 43,845 frees, 1,571,257,822 bytes allocated +==1488634== +==1488634== LEAK SUMMARY: +==1488634== definitely lost: 0 bytes in 0 blocks +==1488634== indirectly lost: 0 bytes in 0 blocks +==1488634== possibly lost: 0 bytes in 0 blocks +==1488634== still reachable: 24 bytes in 2 blocks +==1488634== suppressed: 995,049 bytes in 13,911 blocks +==1488634== Reachable blocks (those to which a pointer was found) are not shown. +==1488634== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488634== +==1488634== For lists of detected and suppressed errors, rerun with: -s +==1488634== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestCompressibleNonlinearElasticitySolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCompressibleNonlinearElasticitySolver_valgrind.txt new file mode 100644 index 0000000000..ee794b61f0 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCompressibleNonlinearElasticitySolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489692== Memcheck, a memory error detector +==1489692== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489692== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489692== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestCompressibleNonlinearElasticitySolver -malloc_debug -malloc_dump -memory_info +==1489692== Parent PID: 1488630 +==1489692== +==1489692== +==1489692== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489692== Open file descriptor 12: +==1489692== at 0x840E07D: pipe (pipe.c:29) +==1489692== by 0x102C707D: ??? +==1489692== by 0xBC044CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489692== by 0x7C2F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489692== by 0x7BC8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489692== by 0x6899D38: PetscInitialize (pinit.c:924) +==1489692== by 0x6771153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489692== by 0x67711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489692== by 0x169A90: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489692== by 0x163FD1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489692== by 0x16757C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489692== by 0x16741C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489692== by 0x167AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489692== by 0x161595: main (TestCompressibleNonlinearElasticitySolver.cpp:19) +==1489692== +==1489692== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489692== at 0x8412A1C: __open_nocancel (open64_nocancel.c:39) +==1489692== by 0x8396BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489692== by 0x7B23822: ??? +==1489692== by 0x7B2396F: ??? +==1489692== by 0xBCA96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489692== by 0xBCA9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489692== by 0xBC5F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489692== by 0xBC042DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489692== by 0x7C2F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489692== by 0x7BC8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489692== by 0x6899D38: PetscInitialize (pinit.c:924) +==1489692== by 0x6771153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489692== by 0x67711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489692== by 0x169A90: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489692== by 0x163FD1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489692== by 0x16757C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489692== by 0x16741C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489692== by 0x167AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489692== by 0x161595: main (TestCompressibleNonlinearElasticitySolver.cpp:19) +==1489692== +==1489692== Open file descriptor 115: +==1489692== +==1489692== +==1489692== Open file descriptor 112: +==1489692== +==1489692== +==1489692== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCompressibleNonlinearElasticitySolver_valgrind.txt +==1489692== +==1489692== +==1489692== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489692== +==1489692== +==1489692== +==1489692== HEAP SUMMARY: +==1489692== in use at exit: 995,505 bytes in 13,913 blocks +==1489692== total heap usage: 321,698 allocs, 307,785 frees, 1,614,412,815 bytes allocated +==1489692== +==1489692== LEAK SUMMARY: +==1489692== definitely lost: 0 bytes in 0 blocks +==1489692== indirectly lost: 0 bytes in 0 blocks +==1489692== possibly lost: 0 bytes in 0 blocks +==1489692== still reachable: 24 bytes in 2 blocks +==1489692== suppressed: 995,481 bytes in 13,911 blocks +==1489692== Reachable blocks (those to which a pointer was found) are not shown. +==1489692== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489692== +==1489692== For lists of detected and suppressed errors, rerun with: -s +==1489692== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestConductivityTensors_valgrind.txt b/log-files/2024-02-21_13-45-57/TestConductivityTensors_valgrind.txt new file mode 100644 index 0000000000..db86e50c0b --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestConductivityTensors_valgrind.txt @@ -0,0 +1,73 @@ +==1506959== Memcheck, a memory error detector +==1506959== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506959== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506959== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestConductivityTensors -malloc_debug -malloc_dump -memory_info +==1506959== Parent PID: 1488630 +==1506959== +==1506959== +==1506959== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506959== Open file descriptor 12: +==1506959== at 0xA2F607D: pipe (pipe.c:29) +==1506959== by 0x13F9607D: ??? +==1506959== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506959== by 0xB9EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506959== by 0xB988D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506959== by 0xA67FD38: PetscInitialize (pinit.c:924) +==1506959== by 0x9AF4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506959== by 0x9AF41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506959== by 0x1288D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506959== by 0x123B0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506959== by 0x12665E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506959== by 0x1264FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506959== by 0x126B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506959== by 0x121F35: main (TestConductivityTensors.cpp:19) +==1506959== +==1506959== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506959== at 0xA2FAA1C: __open_nocancel (open64_nocancel.c:39) +==1506959== by 0xA27EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506959== by 0x9B28822: ??? +==1506959== by 0x9B2896F: ??? +==1506959== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506959== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506959== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506959== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506959== by 0xB9EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506959== by 0xB988D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506959== by 0xA67FD38: PetscInitialize (pinit.c:924) +==1506959== by 0x9AF4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506959== by 0x9AF41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506959== by 0x1288D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506959== by 0x123B0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506959== by 0x12665E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506959== by 0x1264FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506959== by 0x126B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506959== by 0x121F35: main (TestConductivityTensors.cpp:19) +==1506959== +==1506959== Open file descriptor 115: +==1506959== +==1506959== +==1506959== Open file descriptor 112: +==1506959== +==1506959== +==1506959== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConductivityTensors_valgrind.txt +==1506959== +==1506959== +==1506959== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506959== +==1506959== +==1506959== +==1506959== HEAP SUMMARY: +==1506959== in use at exit: 995,569 bytes in 13,913 blocks +==1506959== total heap usage: 71,216 allocs, 57,303 frees, 1,572,591,420 bytes allocated +==1506959== +==1506959== LEAK SUMMARY: +==1506959== definitely lost: 0 bytes in 0 blocks +==1506959== indirectly lost: 0 bytes in 0 blocks +==1506959== possibly lost: 0 bytes in 0 blocks +==1506959== still reachable: 24 bytes in 2 blocks +==1506959== suppressed: 995,545 bytes in 13,911 blocks +==1506959== Reachable blocks (those to which a pointer was found) are not shown. +==1506959== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506959== +==1506959== For lists of detected and suppressed errors, rerun with: -s +==1506959== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestConstBoundaryCondition_valgrind.txt b/log-files/2024-02-21_13-45-57/TestConstBoundaryCondition_valgrind.txt new file mode 100644 index 0000000000..80a8d960a0 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestConstBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==1489606== Memcheck, a memory error detector +==1489606== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489606== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489606== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestConstBoundaryCondition -malloc_debug -malloc_dump -memory_info +==1489606== Parent PID: 1488630 +==1489606== +==1489606== +==1489606== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489606== Open file descriptor 12: +==1489606== at 0x691C07D: pipe (pipe.c:29) +==1489606== by 0x1014507D: ??? +==1489606== by 0xBF8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489606== by 0x8390418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489606== by 0x8329D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489606== by 0x6C6BD38: PetscInitialize (pinit.c:924) +==1489606== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489606== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489606== by 0x111DEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489606== by 0x10DBB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489606== by 0x10FEA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489606== by 0x10FD9D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489606== by 0x1103B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489606== by 0x10C3B5: main (TestConstBoundaryCondition.cpp:18) +==1489606== +==1489606== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489606== at 0x6920A1C: __open_nocancel (open64_nocancel.c:39) +==1489606== by 0x68A4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489606== by 0x6596822: ??? +==1489606== by 0x659696F: ??? +==1489606== by 0xC0346DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489606== by 0xC034938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489606== by 0xBFEA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489606== by 0xBF8D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489606== by 0x8390418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489606== by 0x8329D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489606== by 0x6C6BD38: PetscInitialize (pinit.c:924) +==1489606== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489606== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489606== by 0x111DEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489606== by 0x10DBB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489606== by 0x10FEA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489606== by 0x10FD9D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489606== by 0x1103B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489606== by 0x10C3B5: main (TestConstBoundaryCondition.cpp:18) +==1489606== +==1489606== Open file descriptor 115: +==1489606== +==1489606== +==1489606== Open file descriptor 112: +==1489606== +==1489606== +==1489606== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConstBoundaryCondition_valgrind.txt +==1489606== +==1489606== +==1489606== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489606== +==1489606== +==1489606== +==1489606== HEAP SUMMARY: +==1489606== in use at exit: 995,489 bytes in 13,913 blocks +==1489606== total heap usage: 59,828 allocs, 45,915 frees, 1,571,448,784 bytes allocated +==1489606== +==1489606== LEAK SUMMARY: +==1489606== definitely lost: 0 bytes in 0 blocks +==1489606== indirectly lost: 0 bytes in 0 blocks +==1489606== possibly lost: 0 bytes in 0 blocks +==1489606== still reachable: 24 bytes in 2 blocks +==1489606== suppressed: 995,465 bytes in 13,911 blocks +==1489606== Reachable blocks (those to which a pointer was found) are not shown. +==1489606== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489606== +==1489606== For lists of detected and suppressed errors, rerun with: -s +==1489606== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt b/log-files/2024-02-21_13-45-57/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt new file mode 100644 index 0000000000..f1e3f3e30d --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==1489693== Memcheck, a memory error detector +==1489693== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489693== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489693== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestContinuumMechanicsNeumannBcsAssembler -malloc_debug -malloc_dump -memory_info +==1489693== Parent PID: 1488630 +==1489693== +==1489693== +==1489693== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489693== Open file descriptor 12: +==1489693== at 0x82D707D: pipe (pipe.c:29) +==1489693== by 0x102C707D: ??? +==1489693== by 0xC15C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489693== by 0x893E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489693== by 0x88D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489693== by 0x6899D38: PetscInitialize (pinit.c:924) +==1489693== by 0x6771153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489693== by 0x67711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489693== by 0x132A16: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489693== by 0x12DD0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489693== by 0x130686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489693== by 0x130526: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489693== by 0x130BBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489693== by 0x12C135: main (TestContinuumMechanicsNeumannBcsAssembler.cpp:19) +==1489693== +==1489693== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489693== at 0x82DBA1C: __open_nocancel (open64_nocancel.c:39) +==1489693== by 0x825FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489693== by 0x7B23822: ??? +==1489693== by 0x7B2396F: ??? +==1489693== by 0xC2016DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489693== by 0xC201938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489693== by 0xC1B7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489693== by 0xC15C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489693== by 0x893E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489693== by 0x88D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489693== by 0x6899D38: PetscInitialize (pinit.c:924) +==1489693== by 0x6771153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489693== by 0x67711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489693== by 0x132A16: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489693== by 0x12DD0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489693== by 0x130686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489693== by 0x130526: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489693== by 0x130BBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489693== by 0x12C135: main (TestContinuumMechanicsNeumannBcsAssembler.cpp:19) +==1489693== +==1489693== Open file descriptor 115: +==1489693== +==1489693== +==1489693== Open file descriptor 112: +==1489693== +==1489693== +==1489693== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt +==1489693== +==1489693== +==1489693== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489693== +==1489693== +==1489693== +==1489693== HEAP SUMMARY: +==1489693== in use at exit: 995,505 bytes in 13,913 blocks +==1489693== total heap usage: 60,985 allocs, 47,072 frees, 1,571,756,470 bytes allocated +==1489693== +==1489693== LEAK SUMMARY: +==1489693== definitely lost: 0 bytes in 0 blocks +==1489693== indirectly lost: 0 bytes in 0 blocks +==1489693== possibly lost: 0 bytes in 0 blocks +==1489693== still reachable: 24 bytes in 2 blocks +==1489693== suppressed: 995,481 bytes in 13,911 blocks +==1489693== Reachable blocks (those to which a pointer was found) are not shown. +==1489693== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489693== +==1489693== For lists of detected and suppressed errors, rerun with: -s +==1489693== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestContractionModels_valgrind.txt b/log-files/2024-02-21_13-45-57/TestContractionModels_valgrind.txt new file mode 100644 index 0000000000..b90189c46e --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestContractionModels_valgrind.txt @@ -0,0 +1,73 @@ +==1506323== Memcheck, a memory error detector +==1506323== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506323== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506323== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestContractionModels -malloc_debug -malloc_dump -memory_info +==1506323== Parent PID: 1488630 +==1506323== +==1506323== +==1506323== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506323== Open file descriptor 12: +==1506323== at 0x9DC407D: pipe (pipe.c:29) +==1506323== by 0x13F9607D: ??? +==1506323== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506323== by 0x9910418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506323== by 0x98A9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506323== by 0x857AD38: PetscInitialize (pinit.c:924) +==1506323== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506323== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506323== by 0x12263F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1506323== by 0x11CBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506323== by 0x11F788: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506323== by 0x11F628: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506323== by 0x11FCBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506323== by 0x11AE95: main (TestContractionModels.cpp:19) +==1506323== +==1506323== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506323== at 0x9DC8A1C: __open_nocancel (open64_nocancel.c:39) +==1506323== by 0x9D4CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506323== by 0x9804822: ??? +==1506323== by 0x980496F: ??? +==1506323== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506323== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506323== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506323== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506323== by 0x9910418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506323== by 0x98A9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506323== by 0x857AD38: PetscInitialize (pinit.c:924) +==1506323== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506323== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506323== by 0x12263F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1506323== by 0x11CBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506323== by 0x11F788: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506323== by 0x11F628: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506323== by 0x11FCBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506323== by 0x11AE95: main (TestContractionModels.cpp:19) +==1506323== +==1506323== Open file descriptor 115: +==1506323== +==1506323== +==1506323== Open file descriptor 112: +==1506323== +==1506323== +==1506323== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestContractionModels_valgrind.txt +==1506323== +==1506323== +==1506323== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506323== +==1506323== +==1506323== +==1506323== HEAP SUMMARY: +==1506323== in use at exit: 995,510 bytes in 13,909 blocks +==1506323== total heap usage: 4,656,170 allocs, 4,642,261 frees, 1,781,597,887 bytes allocated +==1506323== +==1506323== LEAK SUMMARY: +==1506323== definitely lost: 0 bytes in 0 blocks +==1506323== indirectly lost: 0 bytes in 0 blocks +==1506323== possibly lost: 0 bytes in 0 blocks +==1506323== still reachable: 24 bytes in 2 blocks +==1506323== suppressed: 995,486 bytes in 13,907 blocks +==1506323== Reachable blocks (those to which a pointer was found) are not shown. +==1506323== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506323== +==1506323== For lists of detected and suppressed errors, rerun with: -s +==1506323== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestConvergenceTester_valgrind.txt b/log-files/2024-02-21_13-45-57/TestConvergenceTester_valgrind.txt new file mode 100644 index 0000000000..5ce8957dc8 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestConvergenceTester_valgrind.txt @@ -0,0 +1,73 @@ +==1505117== Memcheck, a memory error detector +==1505117== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505117== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505117== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestConvergenceTester -malloc_debug -malloc_dump -memory_info +==1505117== Parent PID: 1488630 +==1505117== +==1505117== +==1505117== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505117== Open file descriptor 12: +==1505117== at 0xA8BA07D: pipe (pipe.c:29) +==1505117== by 0x13F9607D: ??? +==1505117== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505117== by 0xBFB5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505117== by 0xBF4ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505117== by 0xAC45D38: PetscInitialize (pinit.c:924) +==1505117== by 0xA0B8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505117== by 0xA0B81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505117== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505117== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505117== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505117== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505117== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505117== by 0x11B5F5: main (TestConvergenceTester.cpp:18) +==1505117== +==1505117== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505117== at 0xA8BEA1C: __open_nocancel (open64_nocancel.c:39) +==1505117== by 0xA842BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505117== by 0xA0EC822: ??? +==1505117== by 0xA0EC96F: ??? +==1505117== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505117== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505117== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505117== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505117== by 0xBFB5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505117== by 0xBF4ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505117== by 0xAC45D38: PetscInitialize (pinit.c:924) +==1505117== by 0xA0B8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505117== by 0xA0B81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505117== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505117== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505117== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505117== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505117== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505117== by 0x11B5F5: main (TestConvergenceTester.cpp:18) +==1505117== +==1505117== Open file descriptor 115: +==1505117== +==1505117== +==1505117== Open file descriptor 112: +==1505117== +==1505117== +==1505117== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConvergenceTester_valgrind.txt +==1505117== +==1505117== +==1505117== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505117== +==1505117== +==1505117== +==1505117== HEAP SUMMARY: +==1505117== in use at exit: 995,990 bytes in 13,919 blocks +==1505117== total heap usage: 1,822,771 allocs, 1,808,852 frees, 2,147,258,799 bytes allocated +==1505117== +==1505117== LEAK SUMMARY: +==1505117== definitely lost: 0 bytes in 0 blocks +==1505117== indirectly lost: 0 bytes in 0 blocks +==1505117== possibly lost: 0 bytes in 0 blocks +==1505117== still reachable: 24 bytes in 2 blocks +==1505117== suppressed: 995,966 bytes in 13,917 blocks +==1505117== Reachable blocks (those to which a pointer was found) are not shown. +==1505117== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505117== +==1505117== For lists of detected and suppressed errors, rerun with: -s +==1505117== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 117 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestCoupledCableTestProblem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCoupledCableTestProblem_valgrind.txt new file mode 100644 index 0000000000..1024940365 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCoupledCableTestProblem_valgrind.txt @@ -0,0 +1,73 @@ +==1489488== Memcheck, a memory error detector +==1489488== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489488== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489488== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestCoupledCableTestProblem -malloc_debug -malloc_dump -memory_info +==1489488== Parent PID: 1488630 +==1489488== +==1489488== +==1489488== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489488== Open file descriptor 12: +==1489488== at 0x815707D: pipe (pipe.c:29) +==1489488== by 0x1014507D: ??? +==1489488== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489488== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489488== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489488== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489488== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489488== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489488== by 0x13CC22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489488== by 0x137D33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489488== by 0x13A8DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489488== by 0x13A7D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489488== by 0x13ADE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489488== by 0x136535: main (TestCoupledCableTestProblem.cpp:18) +==1489488== +==1489488== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489488== at 0x815BA1C: __open_nocancel (open64_nocancel.c:39) +==1489488== by 0x80DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489488== by 0x79A3822: ??? +==1489488== by 0x79A396F: ??? +==1489488== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489488== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489488== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489488== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489488== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489488== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489488== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489488== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489488== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489488== by 0x13CC22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489488== by 0x137D33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489488== by 0x13A8DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489488== by 0x13A7D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489488== by 0x13ADE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489488== by 0x136535: main (TestCoupledCableTestProblem.cpp:18) +==1489488== +==1489488== Open file descriptor 115: +==1489488== +==1489488== +==1489488== Open file descriptor 112: +==1489488== +==1489488== +==1489488== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCoupledCableTestProblem_valgrind.txt +==1489488== +==1489488== +==1489488== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489488== +==1489488== +==1489488== +==1489488== HEAP SUMMARY: +==1489488== in use at exit: 995,489 bytes in 13,913 blocks +==1489488== total heap usage: 514,232 allocs, 500,319 frees, 1,592,157,267 bytes allocated +==1489488== +==1489488== LEAK SUMMARY: +==1489488== definitely lost: 0 bytes in 0 blocks +==1489488== indirectly lost: 0 bytes in 0 blocks +==1489488== possibly lost: 0 bytes in 0 blocks +==1489488== still reachable: 24 bytes in 2 blocks +==1489488== suppressed: 995,465 bytes in 13,911 blocks +==1489488== Reachable blocks (those to which a pointer was found) are not shown. +==1489488== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489488== +==1489488== For lists of detected and suppressed errors, rerun with: -s +==1489488== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt new file mode 100644 index 0000000000..4c4f98dd10 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1501523== Memcheck, a memory error detector +==1501523== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1501523== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1501523== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial -malloc_debug -malloc_dump -memory_info +==1501523== Parent PID: 1488630 +==1501523== +==1501523== +==1501523== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1501523== Open file descriptor 12: +==1501523== at 0x1006307D: pipe (pipe.c:29) +==1501523== by 0x18A1D07D: ??? +==1501523== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1501523== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1501523== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1501523== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1501523== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1501523== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1501523== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1501523== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1501523== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1501523== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1501523== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1501523== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) +==1501523== +==1501523== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1501523== at 0x10067A1C: __open_nocancel (open64_nocancel.c:39) +==1501523== by 0xFFEBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1501523== by 0xE49F822: ??? +==1501523== by 0xE49F96F: ??? +==1501523== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1501523== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1501523== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1501523== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1501523== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1501523== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1501523== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1501523== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1501523== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1501523== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1501523== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1501523== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1501523== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1501523== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1501523== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) +==1501523== +==1501523== Open file descriptor 115: +==1501523== +==1501523== +==1501523== Open file descriptor 112: +==1501523== +==1501523== +==1501523== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt +==1501523== +==1501523== +==1501523== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1501523== +==1501523== +==1501523== +==1501523== HEAP SUMMARY: +==1501523== in use at exit: 995,585 bytes in 13,914 blocks +==1501523== total heap usage: 528,844 allocs, 514,930 frees, 1,885,384,305 bytes allocated +==1501523== +==1501523== LEAK SUMMARY: +==1501523== definitely lost: 0 bytes in 0 blocks +==1501523== indirectly lost: 0 bytes in 0 blocks +==1501523== possibly lost: 0 bytes in 0 blocks +==1501523== still reachable: 56 bytes in 3 blocks +==1501523== suppressed: 995,529 bytes in 13,911 blocks +==1501523== Reachable blocks (those to which a pointer was found) are not shown. +==1501523== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1501523== +==1501523== For lists of detected and suppressed errors, rerun with: -s +==1501523== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt new file mode 100644 index 0000000000..61aa81443b --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1502850== Memcheck, a memory error detector +==1502850== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1502850== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1502850== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellCycleModelTutorial -malloc_debug -malloc_dump -memory_info +==1502850== Parent PID: 1488630 +==1502850== +==1502850== +==1502850== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1502850== Open file descriptor 12: +==1502850== at 0x1014A07D: pipe (pipe.c:29) +==1502850== by 0x18A1D07D: ??? +==1502850== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1502850== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1502850== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1502850== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1502850== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1502850== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1502850== by 0x2258F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1502850== by 0x21F2AB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1502850== by 0x222B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1502850== by 0x222A01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1502850== by 0x223097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1502850== by 0x21BBD5: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19) +==1502850== +==1502850== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1502850== at 0x1014EA1C: __open_nocancel (open64_nocancel.c:39) +==1502850== by 0x100D2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1502850== by 0xE49F822: ??? +==1502850== by 0xE49F96F: ??? +==1502850== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1502850== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1502850== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1502850== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1502850== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1502850== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1502850== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1502850== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1502850== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1502850== by 0x2258F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1502850== by 0x21F2AB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1502850== by 0x222B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1502850== by 0x222A01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1502850== by 0x223097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1502850== by 0x21BBD5: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19) +==1502850== +==1502850== Open file descriptor 115: +==1502850== +==1502850== +==1502850== Open file descriptor 112: +==1502850== +==1502850== +==1502850== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt +==1502850== +==1502850== +==1502850== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1502850== +==1502850== +==1502850== +==1502850== HEAP SUMMARY: +==1502850== in use at exit: 995,526 bytes in 13,910 blocks +==1502850== total heap usage: 8,989,144 allocs, 8,975,234 frees, 2,417,644,180 bytes allocated +==1502850== +==1502850== LEAK SUMMARY: +==1502850== definitely lost: 0 bytes in 0 blocks +==1502850== indirectly lost: 0 bytes in 0 blocks +==1502850== possibly lost: 0 bytes in 0 blocks +==1502850== still reachable: 56 bytes in 3 blocks +==1502850== suppressed: 995,470 bytes in 13,907 blocks +==1502850== Reachable blocks (those to which a pointer was found) are not shown. +==1502850== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1502850== +==1502850== For lists of detected and suppressed errors, rerun with: -s +==1502850== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt new file mode 100644 index 0000000000..cb2022e7ab --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1503429== Memcheck, a memory error detector +==1503429== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1503429== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1503429== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellKillerTutorial -malloc_debug -malloc_dump -memory_info +==1503429== Parent PID: 1488630 +==1503429== +==1503429== +==1503429== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1503429== Open file descriptor 12: +==1503429== at 0x1014A07D: pipe (pipe.c:29) +==1503429== by 0x18A1D07D: ??? +==1503429== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503429== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503429== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503429== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1503429== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503429== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503429== by 0x141179: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1503429== by 0x13BF3F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503429== by 0x13E6FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503429== by 0x13E5F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503429== by 0x13EC09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503429== by 0x13A735: main (TestCreatingAndUsingANewCellKillerTutorial.cpp:18) +==1503429== +==1503429== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1503429== at 0x1014EA1C: __open_nocancel (open64_nocancel.c:39) +==1503429== by 0x100D2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1503429== by 0xE49F822: ??? +==1503429== by 0xE49F96F: ??? +==1503429== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503429== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503429== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503429== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503429== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503429== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503429== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1503429== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503429== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503429== by 0x141179: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1503429== by 0x13BF3F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503429== by 0x13E6FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503429== by 0x13E5F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503429== by 0x13EC09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503429== by 0x13A735: main (TestCreatingAndUsingANewCellKillerTutorial.cpp:18) +==1503429== +==1503429== Open file descriptor 115: +==1503429== +==1503429== +==1503429== Open file descriptor 112: +==1503429== +==1503429== +==1503429== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt +==1503429== +==1503429== +==1503429== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1503429== +==1503429== +==1503429== +==1503429== HEAP SUMMARY: +==1503429== in use at exit: 995,526 bytes in 13,910 blocks +==1503429== total heap usage: 2,729,797 allocs, 2,715,887 frees, 1,740,923,872 bytes allocated +==1503429== +==1503429== LEAK SUMMARY: +==1503429== definitely lost: 0 bytes in 0 blocks +==1503429== indirectly lost: 0 bytes in 0 blocks +==1503429== possibly lost: 0 bytes in 0 blocks +==1503429== still reachable: 56 bytes in 3 blocks +==1503429== suppressed: 995,470 bytes in 13,907 blocks +==1503429== Reachable blocks (those to which a pointer was found) are not shown. +==1503429== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1503429== +==1503429== For lists of detected and suppressed errors, rerun with: -s +==1503429== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt new file mode 100644 index 0000000000..fd896930cb --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1503661== Memcheck, a memory error detector +==1503661== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1503661== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1503661== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellMutationStateTutorial -malloc_debug -malloc_dump -memory_info +==1503661== Parent PID: 1488630 +==1503661== +==1503661== +==1503661== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1503661== Open file descriptor 12: +==1503661== at 0x1006307D: pipe (pipe.c:29) +==1503661== by 0x18A1D07D: ??? +==1503661== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503661== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503661== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503661== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1503661== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503661== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503661== by 0x149987: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1503661== by 0x1442D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503661== by 0x146FD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503661== by 0x146E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503661== by 0x147509: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503661== by 0x1426F5: main (TestCreatingAndUsingANewCellMutationStateTutorial.cpp:19) +==1503661== +==1503661== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1503661== at 0x10067A1C: __open_nocancel (open64_nocancel.c:39) +==1503661== by 0xFFEBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1503661== by 0xE49F822: ??? +==1503661== by 0xE49F96F: ??? +==1503661== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503661== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503661== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503661== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503661== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503661== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503661== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1503661== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503661== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503661== by 0x149987: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1503661== by 0x1442D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503661== by 0x146FD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503661== by 0x146E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503661== by 0x147509: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503661== by 0x1426F5: main (TestCreatingAndUsingANewCellMutationStateTutorial.cpp:19) +==1503661== +==1503661== Open file descriptor 115: +==1503661== +==1503661== +==1503661== Open file descriptor 112: +==1503661== +==1503661== +==1503661== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt +==1503661== +==1503661== +==1503661== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1503661== +==1503661== +==1503661== +==1503661== HEAP SUMMARY: +==1503661== in use at exit: 995,526 bytes in 13,910 blocks +==1503661== total heap usage: 4,275,144 allocs, 4,261,234 frees, 2,131,599,601 bytes allocated +==1503661== +==1503661== LEAK SUMMARY: +==1503661== definitely lost: 0 bytes in 0 blocks +==1503661== indirectly lost: 0 bytes in 0 blocks +==1503661== possibly lost: 0 bytes in 0 blocks +==1503661== still reachable: 56 bytes in 3 blocks +==1503661== suppressed: 995,470 bytes in 13,907 blocks +==1503661== Reachable blocks (those to which a pointer was found) are not shown. +==1503661== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1503661== +==1503661== For lists of detected and suppressed errors, rerun with: -s +==1503661== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt new file mode 100644 index 0000000000..fcbd9cc0d7 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1503692== Memcheck, a memory error detector +==1503692== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1503692== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1503692== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial -malloc_debug -malloc_dump -memory_info +==1503692== Parent PID: 1488630 +==1503692== +==1503692== +==1503692== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1503692== Open file descriptor 12: +==1503692== at 0x1006307D: pipe (pipe.c:29) +==1503692== by 0x18A1D07D: ??? +==1503692== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503692== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503692== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503692== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1503692== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503692== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503692== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1503692== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503692== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503692== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503692== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503692== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) +==1503692== +==1503692== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1503692== at 0x10067A1C: __open_nocancel (open64_nocancel.c:39) +==1503692== by 0xFFEBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1503692== by 0xE49F822: ??? +==1503692== by 0xE49F96F: ??? +==1503692== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503692== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503692== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503692== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503692== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503692== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503692== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1503692== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503692== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503692== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1503692== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503692== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503692== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503692== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503692== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) +==1503692== +==1503692== Open file descriptor 115: +==1503692== +==1503692== +==1503692== Open file descriptor 112: +==1503692== +==1503692== +==1503692== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt +==1503692== +==1503692== +==1503692== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1503692== +==1503692== +==1503692== +==1503692== HEAP SUMMARY: +==1503692== in use at exit: 995,585 bytes in 13,914 blocks +==1503692== total heap usage: 438,678 allocs, 424,764 frees, 1,626,516,670 bytes allocated +==1503692== +==1503692== LEAK SUMMARY: +==1503692== definitely lost: 0 bytes in 0 blocks +==1503692== indirectly lost: 0 bytes in 0 blocks +==1503692== possibly lost: 0 bytes in 0 blocks +==1503692== still reachable: 56 bytes in 3 blocks +==1503692== suppressed: 995,529 bytes in 13,911 blocks +==1503692== Reachable blocks (those to which a pointer was found) are not shown. +==1503692== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1503692== +==1503692== For lists of detected and suppressed errors, rerun with: -s +==1503692== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt new file mode 100644 index 0000000000..1371274a6c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1503711== Memcheck, a memory error detector +==1503711== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1503711== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1503711== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellPropertyTutorial -malloc_debug -malloc_dump -memory_info +==1503711== Parent PID: 1488630 +==1503711== +==1503711== +==1503711== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1503711== Open file descriptor 12: +==1503711== at 0x1006307D: pipe (pipe.c:29) +==1503711== by 0x18A1D07D: ??? +==1503711== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503711== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503711== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503711== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1503711== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503711== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503711== by 0x1502FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1503711== by 0x14A5F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503711== by 0x14D664: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503711== by 0x14D504: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503711== by 0x14DB9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503711== by 0x148A15: main (TestCreatingAndUsingANewCellPropertyTutorial.cpp:19) +==1503711== +==1503711== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1503711== at 0x10067A1C: __open_nocancel (open64_nocancel.c:39) +==1503711== by 0xFFEBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1503711== by 0xE49F822: ??? +==1503711== by 0xE49F96F: ??? +==1503711== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503711== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503711== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503711== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503711== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503711== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503711== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1503711== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503711== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503711== by 0x1502FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1503711== by 0x14A5F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503711== by 0x14D664: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503711== by 0x14D504: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503711== by 0x14DB9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503711== by 0x148A15: main (TestCreatingAndUsingANewCellPropertyTutorial.cpp:19) +==1503711== +==1503711== Open file descriptor 115: +==1503711== +==1503711== +==1503711== Open file descriptor 112: +==1503711== +==1503711== +==1503711== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt +==1503711== +==1503711== +==1503711== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1503711== +==1503711== +==1503711== +==1503711== HEAP SUMMARY: +==1503711== in use at exit: 995,526 bytes in 13,910 blocks +==1503711== total heap usage: 2,424,053 allocs, 2,410,143 frees, 1,789,766,786 bytes allocated +==1503711== +==1503711== LEAK SUMMARY: +==1503711== definitely lost: 0 bytes in 0 blocks +==1503711== indirectly lost: 0 bytes in 0 blocks +==1503711== possibly lost: 0 bytes in 0 blocks +==1503711== still reachable: 56 bytes in 3 blocks +==1503711== suppressed: 995,470 bytes in 13,907 blocks +==1503711== Reachable blocks (those to which a pointer was found) are not shown. +==1503711== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1503711== +==1503711== For lists of detected and suppressed errors, rerun with: -s +==1503711== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewForceTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewForceTutorial_valgrind.txt new file mode 100644 index 0000000000..4ae47b2a03 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewForceTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1503807== Memcheck, a memory error detector +==1503807== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1503807== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1503807== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewForceTutorial -malloc_debug -malloc_dump -memory_info +==1503807== Parent PID: 1488630 +==1503807== +==1503807== +==1503807== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1503807== Open file descriptor 12: +==1503807== at 0x1014A07D: pipe (pipe.c:29) +==1503807== by 0x18A1D07D: ??? +==1503807== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503807== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503807== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503807== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1503807== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503807== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503807== by 0x14368F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1503807== by 0x13E09F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503807== by 0x140942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503807== by 0x14083D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503807== by 0x140E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503807== by 0x13C895: main (TestCreatingAndUsingANewForceTutorial.cpp:18) +==1503807== +==1503807== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1503807== at 0x1014EA1C: __open_nocancel (open64_nocancel.c:39) +==1503807== by 0x100D2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1503807== by 0xE49F822: ??? +==1503807== by 0xE49F96F: ??? +==1503807== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503807== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503807== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503807== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503807== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503807== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503807== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1503807== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503807== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503807== by 0x14368F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1503807== by 0x13E09F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503807== by 0x140942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503807== by 0x14083D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503807== by 0x140E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503807== by 0x13C895: main (TestCreatingAndUsingANewForceTutorial.cpp:18) +==1503807== +==1503807== Open file descriptor 115: +==1503807== +==1503807== +==1503807== Open file descriptor 112: +==1503807== +==1503807== +==1503807== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewForceTutorial_valgrind.txt +==1503807== +==1503807== +==1503807== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1503807== +==1503807== +==1503807== +==1503807== HEAP SUMMARY: +==1503807== in use at exit: 995,585 bytes in 13,914 blocks +==1503807== total heap usage: 693,725 allocs, 679,811 frees, 1,782,575,439 bytes allocated +==1503807== +==1503807== LEAK SUMMARY: +==1503807== definitely lost: 0 bytes in 0 blocks +==1503807== indirectly lost: 0 bytes in 0 blocks +==1503807== possibly lost: 0 bytes in 0 blocks +==1503807== still reachable: 56 bytes in 3 blocks +==1503807== suppressed: 995,529 bytes in 13,911 blocks +==1503807== Reachable blocks (those to which a pointer was found) are not shown. +==1503807== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1503807== +==1503807== For lists of detected and suppressed errors, rerun with: -s +==1503807== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt new file mode 100644 index 0000000000..c80154c85c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1503808== Memcheck, a memory error detector +==1503808== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1503808== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1503808== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewSrnModelTutorial -malloc_debug -malloc_dump -memory_info +==1503808== Parent PID: 1488630 +==1503808== +==1503808== +==1503808== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1503808== Open file descriptor 12: +==1503808== at 0x1038D07D: pipe (pipe.c:29) +==1503808== by 0x18A1E07D: ??? +==1503808== by 0x13FE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503808== by 0xFBAE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503808== by 0xFB47D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503808== by 0xE83ED38: PetscInitialize (pinit.c:924) +==1503808== by 0xE6AE153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503808== by 0xE6AE1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503808== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1503808== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503808== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503808== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503808== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503808== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) +==1503808== +==1503808== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1503808== at 0x10391A1C: __open_nocancel (open64_nocancel.c:39) +==1503808== by 0x10315BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1503808== by 0xE6E2822: ??? +==1503808== by 0xE6E296F: ??? +==1503808== by 0x140866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503808== by 0x14086938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503808== by 0x1403C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503808== by 0x13FE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503808== by 0xFBAE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503808== by 0xFB47D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503808== by 0xE83ED38: PetscInitialize (pinit.c:924) +==1503808== by 0xE6AE153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503808== by 0xE6AE1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503808== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1503808== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503808== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503808== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503808== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503808== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) +==1503808== +==1503808== Open file descriptor 115: +==1503808== +==1503808== +==1503808== Open file descriptor 112: +==1503808== +==1503808== +==1503808== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt +==1503808== +==1503808== +==1503808== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1503808== +==1503808== +==1503808== +==1503808== HEAP SUMMARY: +==1503808== in use at exit: 995,526 bytes in 13,910 blocks +==1503808== total heap usage: 3,830,914 allocs, 3,817,004 frees, 1,742,899,797 bytes allocated +==1503808== +==1503808== LEAK SUMMARY: +==1503808== definitely lost: 0 bytes in 0 blocks +==1503808== indirectly lost: 0 bytes in 0 blocks +==1503808== possibly lost: 0 bytes in 0 blocks +==1503808== still reachable: 56 bytes in 3 blocks +==1503808== suppressed: 995,470 bytes in 13,907 blocks +==1503808== Reachable blocks (those to which a pointer was found) are not shown. +==1503808== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1503808== +==1503808== For lists of detected and suppressed errors, rerun with: -s +==1503808== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt new file mode 100644 index 0000000000..6af8e1abeb --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1503876== Memcheck, a memory error detector +==1503876== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1503876== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1503876== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingNewCellBasedWritersTutorial -malloc_debug -malloc_dump -memory_info +==1503876== Parent PID: 1488630 +==1503876== +==1503876== +==1503876== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1503876== Open file descriptor 12: +==1503876== at 0xEBAC07D: pipe (pipe.c:29) +==1503876== by 0x18A1D07D: ??? +==1503876== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503876== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503876== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503876== by 0xF499D38: PetscInitialize (pinit.c:924) +==1503876== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503876== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503876== by 0x1B8DC8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1503876== by 0x1B2CFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503876== by 0x1B669A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503876== by 0x1B6596: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503876== by 0x1B6BA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503876== by 0x1B14F5: main (TestCreatingAndUsingNewCellBasedWritersTutorial.cpp:18) +==1503876== +==1503876== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1503876== at 0xEBB0A1C: __open_nocancel (open64_nocancel.c:39) +==1503876== by 0xEB34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1503876== by 0xE49F822: ??? +==1503876== by 0xE49F96F: ??? +==1503876== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503876== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503876== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503876== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503876== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503876== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503876== by 0xF499D38: PetscInitialize (pinit.c:924) +==1503876== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503876== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503876== by 0x1B8DC8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1503876== by 0x1B2CFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503876== by 0x1B669A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503876== by 0x1B6596: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503876== by 0x1B6BA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503876== by 0x1B14F5: main (TestCreatingAndUsingNewCellBasedWritersTutorial.cpp:18) +==1503876== +==1503876== Open file descriptor 115: +==1503876== +==1503876== +==1503876== Open file descriptor 112: +==1503876== +==1503876== +==1503876== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt +==1503876== +==1503876== +==1503876== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1503876== +==1503876== +==1503876== +==1503876== HEAP SUMMARY: +==1503876== in use at exit: 995,526 bytes in 13,910 blocks +==1503876== total heap usage: 2,255,187 allocs, 2,241,277 frees, 1,810,798,465 bytes allocated +==1503876== +==1503876== LEAK SUMMARY: +==1503876== definitely lost: 0 bytes in 0 blocks +==1503876== indirectly lost: 0 bytes in 0 blocks +==1503876== possibly lost: 0 bytes in 0 blocks +==1503876== still reachable: 56 bytes in 3 blocks +==1503876== suppressed: 995,470 bytes in 13,907 blocks +==1503876== Reachable blocks (those to which a pointer was found) are not shown. +==1503876== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1503876== +==1503876== For lists of detected and suppressed errors, rerun with: -s +==1503876== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestCryptCellsGenerator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCryptCellsGenerator_valgrind.txt new file mode 100644 index 0000000000..20ba061314 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCryptCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==1504182== Memcheck, a memory error detector +==1504182== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504182== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504182== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptCellsGenerator -malloc_debug -malloc_dump -memory_info +==1504182== Parent PID: 1488630 +==1504182== +==1504182== +==1504182== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504182== Open file descriptor 12: +==1504182== at 0x118E107D: pipe (pipe.c:29) +==1504182== by 0x1A6DF07D: ??? +==1504182== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504182== by 0x111E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504182== by 0x11182D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504182== by 0xFE53D38: PetscInitialize (pinit.c:924) +==1504182== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504182== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504182== by 0x1222A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504182== by 0x11D653: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504182== by 0x11FD06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504182== by 0x11FC01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504182== by 0x120215: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504182== by 0x11BE55: main (TestCryptCellsGenerator.cpp:18) +==1504182== +==1504182== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504182== at 0x118E5A1C: __open_nocancel (open64_nocancel.c:39) +==1504182== by 0x11869BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504182== by 0x110DD822: ??? +==1504182== by 0x110DD96F: ??? +==1504182== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504182== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504182== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504182== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504182== by 0x111E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504182== by 0x11182D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504182== by 0xFE53D38: PetscInitialize (pinit.c:924) +==1504182== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504182== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504182== by 0x1222A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504182== by 0x11D653: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504182== by 0x11FD06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504182== by 0x11FC01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504182== by 0x120215: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504182== by 0x11BE55: main (TestCryptCellsGenerator.cpp:18) +==1504182== +==1504182== Open file descriptor 115: +==1504182== +==1504182== +==1504182== Open file descriptor 112: +==1504182== +==1504182== +==1504182== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptCellsGenerator_valgrind.txt +==1504182== +==1504182== +==1504182== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504182== +==1504182== +==1504182== +==1504182== HEAP SUMMARY: +==1504182== in use at exit: 995,729 bytes in 13,915 blocks +==1504182== total heap usage: 99,459 allocs, 85,544 frees, 1,575,328,462 bytes allocated +==1504182== +==1504182== LEAK SUMMARY: +==1504182== definitely lost: 0 bytes in 0 blocks +==1504182== indirectly lost: 0 bytes in 0 blocks +==1504182== possibly lost: 0 bytes in 0 blocks +==1504182== still reachable: 184 bytes in 4 blocks +==1504182== suppressed: 995,545 bytes in 13,911 blocks +==1504182== Reachable blocks (those to which a pointer was found) are not shown. +==1504182== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504182== +==1504182== For lists of detected and suppressed errors, rerun with: -s +==1504182== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCryptDivisionRules_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCryptDivisionRules_valgrind.txt new file mode 100644 index 0000000000..05f9bb9d4c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCryptDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==1504320== Memcheck, a memory error detector +==1504320== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504320== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504320== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptDivisionRules -malloc_debug -malloc_dump -memory_info +==1504320== Parent PID: 1488630 +==1504320== +==1504320== +==1504320== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504320== Open file descriptor 12: +==1504320== at 0x1192307D: pipe (pipe.c:29) +==1504320== by 0x1A6DF07D: ??? +==1504320== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504320== by 0x1122B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504320== by 0x111C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504320== by 0xFEBBD38: PetscInitialize (pinit.c:924) +==1504320== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504320== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504320== by 0x15D2DD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504320== by 0x15795D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504320== by 0x15A6A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504320== by 0x15A542: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504320== by 0x15ABD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504320== by 0x155D85: main (TestCryptDivisionRules.cpp:19) +==1504320== +==1504320== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504320== at 0x11927A1C: __open_nocancel (open64_nocancel.c:39) +==1504320== by 0x118ABBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504320== by 0xFD5F822: ??? +==1504320== by 0xFD5F96F: ??? +==1504320== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504320== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504320== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504320== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504320== by 0x1122B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504320== by 0x111C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504320== by 0xFEBBD38: PetscInitialize (pinit.c:924) +==1504320== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504320== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504320== by 0x15D2DD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504320== by 0x15795D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504320== by 0x15A6A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504320== by 0x15A542: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504320== by 0x15ABD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504320== by 0x155D85: main (TestCryptDivisionRules.cpp:19) +==1504320== +==1504320== Open file descriptor 115: +==1504320== +==1504320== +==1504320== Open file descriptor 112: +==1504320== +==1504320== +==1504320== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptDivisionRules_valgrind.txt +==1504320== +==1504320== +==1504320== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504320== +==1504320== +==1504320== +==1504320== HEAP SUMMARY: +==1504320== in use at exit: 995,617 bytes in 13,915 blocks +==1504320== total heap usage: 68,805 allocs, 54,890 frees, 1,572,408,496 bytes allocated +==1504320== +==1504320== LEAK SUMMARY: +==1504320== definitely lost: 0 bytes in 0 blocks +==1504320== indirectly lost: 0 bytes in 0 blocks +==1504320== possibly lost: 0 bytes in 0 blocks +==1504320== still reachable: 72 bytes in 4 blocks +==1504320== suppressed: 995,545 bytes in 13,911 blocks +==1504320== Reachable blocks (those to which a pointer was found) are not shown. +==1504320== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504320== +==1504320== For lists of detected and suppressed errors, rerun with: -s +==1504320== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCryptProjectionForce_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCryptProjectionForce_valgrind.txt new file mode 100644 index 0000000000..a66405d54c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCryptProjectionForce_valgrind.txt @@ -0,0 +1,73 @@ +==1504254== Memcheck, a memory error detector +==1504254== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504254== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504254== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptProjectionForce -malloc_debug -malloc_dump -memory_info +==1504254== Parent PID: 1488630 +==1504254== +==1504254== +==1504254== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504254== Open file descriptor 12: +==1504254== at 0x1055507D: pipe (pipe.c:29) +==1504254== by 0x1A6DF07D: ??? +==1504254== by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504254== by 0x121B2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504254== by 0x1214BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504254== by 0x10E42D38: PetscInitialize (pinit.c:924) +==1504254== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504254== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504254== by 0x162A3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504254== by 0x15AE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504254== by 0x15DF5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504254== by 0x15DDFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504254== by 0x15E491: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504254== by 0x159295: main (TestCryptProjectionForce.cpp:19) +==1504254== +==1504254== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504254== at 0x10559A1C: __open_nocancel (open64_nocancel.c:39) +==1504254== by 0x104DDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504254== by 0xFD5F822: ??? +==1504254== by 0xFD5F96F: ??? +==1504254== by 0x159956DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504254== by 0x15995938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504254== by 0x1594B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504254== by 0x158F02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504254== by 0x121B2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504254== by 0x1214BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504254== by 0x10E42D38: PetscInitialize (pinit.c:924) +==1504254== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504254== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504254== by 0x162A3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504254== by 0x15AE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504254== by 0x15DF5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504254== by 0x15DDFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504254== by 0x15E491: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504254== by 0x159295: main (TestCryptProjectionForce.cpp:19) +==1504254== +==1504254== Open file descriptor 115: +==1504254== +==1504254== +==1504254== Open file descriptor 112: +==1504254== +==1504254== +==1504254== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptProjectionForce_valgrind.txt +==1504254== +==1504254== +==1504254== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504254== +==1504254== +==1504254== +==1504254== HEAP SUMMARY: +==1504254== in use at exit: 995,681 bytes in 13,915 blocks +==1504254== total heap usage: 100,397 allocs, 86,482 frees, 1,574,661,172 bytes allocated +==1504254== +==1504254== LEAK SUMMARY: +==1504254== definitely lost: 0 bytes in 0 blocks +==1504254== indirectly lost: 0 bytes in 0 blocks +==1504254== possibly lost: 0 bytes in 0 blocks +==1504254== still reachable: 136 bytes in 4 blocks +==1504254== suppressed: 995,545 bytes in 13,911 blocks +==1504254== Reachable blocks (those to which a pointer was found) are not shown. +==1504254== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504254== +==1504254== For lists of detected and suppressed errors, rerun with: -s +==1504254== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCryptProjectionStatistics_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCryptProjectionStatistics_valgrind.txt new file mode 100644 index 0000000000..e35b759329 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCryptProjectionStatistics_valgrind.txt @@ -0,0 +1,73 @@ +==1504431== Memcheck, a memory error detector +==1504431== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504431== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504431== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptProjectionStatistics -malloc_debug -malloc_dump -memory_info +==1504431== Parent PID: 1488630 +==1504431== +==1504431== +==1504431== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504431== Open file descriptor 12: +==1504431== at 0x119C807D: pipe (pipe.c:29) +==1504431== by 0x1A6DF07D: ??? +==1504431== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504431== by 0x111E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504431== by 0x11182D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504431== by 0xFE53D38: PetscInitialize (pinit.c:924) +==1504431== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504431== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504431== by 0x128443: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504431== by 0x123753: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504431== by 0x125C6C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504431== by 0x125B67: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504431== by 0x12617B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504431== by 0x121F55: main (TestCryptProjectionStatistics.cpp:18) +==1504431== +==1504431== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504431== at 0x119CCA1C: __open_nocancel (open64_nocancel.c:39) +==1504431== by 0x11950BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504431== by 0x110DD822: ??? +==1504431== by 0x110DD96F: ??? +==1504431== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504431== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504431== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504431== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504431== by 0x111E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504431== by 0x11182D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504431== by 0xFE53D38: PetscInitialize (pinit.c:924) +==1504431== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504431== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504431== by 0x128443: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504431== by 0x123753: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504431== by 0x125C6C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504431== by 0x125B67: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504431== by 0x12617B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504431== by 0x121F55: main (TestCryptProjectionStatistics.cpp:18) +==1504431== +==1504431== Open file descriptor 115: +==1504431== +==1504431== +==1504431== Open file descriptor 112: +==1504431== +==1504431== +==1504431== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptProjectionStatistics_valgrind.txt +==1504431== +==1504431== +==1504431== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504431== +==1504431== +==1504431== +==1504431== HEAP SUMMARY: +==1504431== in use at exit: 995,601 bytes in 13,914 blocks +==1504431== total heap usage: 1,096,230 allocs, 1,082,316 frees, 1,634,329,623 bytes allocated +==1504431== +==1504431== LEAK SUMMARY: +==1504431== definitely lost: 0 bytes in 0 blocks +==1504431== indirectly lost: 0 bytes in 0 blocks +==1504431== possibly lost: 0 bytes in 0 blocks +==1504431== still reachable: 56 bytes in 3 blocks +==1504431== suppressed: 995,545 bytes in 13,911 blocks +==1504431== Reachable blocks (those to which a pointer was found) are not shown. +==1504431== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504431== +==1504431== For lists of detected and suppressed errors, rerun with: -s +==1504431== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCryptSimulation1d_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCryptSimulation1d_valgrind.txt new file mode 100644 index 0000000000..7a34fee157 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCryptSimulation1d_valgrind.txt @@ -0,0 +1,73 @@ +==1504387== Memcheck, a memory error detector +==1504387== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504387== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504387== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation1d -malloc_debug -malloc_dump -memory_info +==1504387== Parent PID: 1488630 +==1504387== +==1504387== +==1504387== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504387== Open file descriptor 12: +==1504387== at 0x1192307D: pipe (pipe.c:29) +==1504387== by 0x1A6DF07D: ??? +==1504387== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504387== by 0x1122B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504387== by 0x111C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504387== by 0xFEBBD38: PetscInitialize (pinit.c:924) +==1504387== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504387== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504387== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504387== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504387== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504387== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504387== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504387== by 0x21B395: main (TestCryptSimulation1d.cpp:18) +==1504387== +==1504387== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504387== at 0x11927A1C: __open_nocancel (open64_nocancel.c:39) +==1504387== by 0x118ABBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504387== by 0xFD5F822: ??? +==1504387== by 0xFD5F96F: ??? +==1504387== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504387== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504387== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504387== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504387== by 0x1122B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504387== by 0x111C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504387== by 0xFEBBD38: PetscInitialize (pinit.c:924) +==1504387== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504387== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504387== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504387== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504387== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504387== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504387== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504387== by 0x21B395: main (TestCryptSimulation1d.cpp:18) +==1504387== +==1504387== Open file descriptor 115: +==1504387== +==1504387== +==1504387== Open file descriptor 112: +==1504387== +==1504387== +==1504387== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation1d_valgrind.txt +==1504387== +==1504387== +==1504387== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504387== +==1504387== +==1504387== +==1504387== HEAP SUMMARY: +==1504387== in use at exit: 995,542 bytes in 13,910 blocks +==1504387== total heap usage: 4,127,673 allocs, 4,113,763 frees, 2,210,200,539 bytes allocated +==1504387== +==1504387== LEAK SUMMARY: +==1504387== definitely lost: 0 bytes in 0 blocks +==1504387== indirectly lost: 0 bytes in 0 blocks +==1504387== possibly lost: 0 bytes in 0 blocks +==1504387== still reachable: 56 bytes in 3 blocks +==1504387== suppressed: 995,486 bytes in 13,907 blocks +==1504387== Reachable blocks (those to which a pointer was found) are not shown. +==1504387== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504387== +==1504387== For lists of detected and suppressed errors, rerun with: -s +==1504387== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt new file mode 100644 index 0000000000..17a33be0b3 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==1504388== Memcheck, a memory error detector +==1504388== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504388== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504388== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==1504388== Parent PID: 1488630 +==1504388== +==1504388== +==1504388== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504388== Open file descriptor 12: +==1504388== at 0x1055507D: pipe (pipe.c:29) +==1504388== by 0x1A6DF07D: ??? +==1504388== by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504388== by 0x121B2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504388== by 0x1214BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504388== by 0x10E42D38: PetscInitialize (pinit.c:924) +==1504388== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504388== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504388== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504388== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504388== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504388== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504388== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504388== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) +==1504388== +==1504388== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504388== at 0x10559A1C: __open_nocancel (open64_nocancel.c:39) +==1504388== by 0x104DDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504388== by 0xFD5F822: ??? +==1504388== by 0xFD5F96F: ??? +==1504388== by 0x159956DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504388== by 0x15995938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504388== by 0x1594B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504388== by 0x158F02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504388== by 0x121B2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504388== by 0x1214BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504388== by 0x10E42D38: PetscInitialize (pinit.c:924) +==1504388== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504388== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504388== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504388== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504388== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504388== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504388== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504388== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) +==1504388== +==1504388== Open file descriptor 115: +==1504388== +==1504388== +==1504388== Open file descriptor 112: +==1504388== +==1504388== +==1504388== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt +==1504388== +==1504388== +==1504388== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504388== +==1504388== +==1504388== +==1504388== HEAP SUMMARY: +==1504388== in use at exit: 995,542 bytes in 13,910 blocks +==1504388== total heap usage: 6,320,035 allocs, 6,306,125 frees, 2,290,531,333 bytes allocated +==1504388== +==1504388== LEAK SUMMARY: +==1504388== definitely lost: 0 bytes in 0 blocks +==1504388== indirectly lost: 0 bytes in 0 blocks +==1504388== possibly lost: 0 bytes in 0 blocks +==1504388== still reachable: 56 bytes in 3 blocks +==1504388== suppressed: 995,486 bytes in 13,907 blocks +==1504388== Reachable blocks (those to which a pointer was found) are not shown. +==1504388== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504388== +==1504388== For lists of detected and suppressed errors, rerun with: -s +==1504388== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 0000000000..4c1aab31b5 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==1504416== Memcheck, a memory error detector +==1504416== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504416== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504416== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==1504416== Parent PID: 1488630 +==1504416== +==1504416== +==1504416== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504416== Open file descriptor 12: +==1504416== at 0x1192307D: pipe (pipe.c:29) +==1504416== by 0x1A6DF07D: ??? +==1504416== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504416== by 0x1122B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504416== by 0x111C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504416== by 0xFEBBD38: PetscInitialize (pinit.c:924) +==1504416== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504416== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504416== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504416== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504416== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504416== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504416== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504416== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) +==1504416== +==1504416== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504416== at 0x11927A1C: __open_nocancel (open64_nocancel.c:39) +==1504416== by 0x118ABBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504416== by 0xFD5F822: ??? +==1504416== by 0xFD5F96F: ??? +==1504416== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504416== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504416== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504416== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504416== by 0x1122B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504416== by 0x111C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504416== by 0xFEBBD38: PetscInitialize (pinit.c:924) +==1504416== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504416== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504416== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504416== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504416== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504416== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504416== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504416== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) +==1504416== +==1504416== Open file descriptor 115: +==1504416== +==1504416== +==1504416== Open file descriptor 112: +==1504416== +==1504416== +==1504416== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt +==1504416== +==1504416== +==1504416== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504416== +==1504416== +==1504416== +==1504416== HEAP SUMMARY: +==1504416== in use at exit: 995,542 bytes in 13,910 blocks +==1504416== total heap usage: 3,730,360 allocs, 3,716,450 frees, 1,854,620,284 bytes allocated +==1504416== +==1504416== LEAK SUMMARY: +==1504416== definitely lost: 0 bytes in 0 blocks +==1504416== indirectly lost: 0 bytes in 0 blocks +==1504416== possibly lost: 0 bytes in 0 blocks +==1504416== still reachable: 56 bytes in 3 blocks +==1504416== suppressed: 995,486 bytes in 13,907 blocks +==1504416== Reachable blocks (those to which a pointer was found) are not shown. +==1504416== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504416== +==1504416== For lists of detected and suppressed errors, rerun with: -s +==1504416== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestCryptSimulationBoundaryCondition_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCryptSimulationBoundaryCondition_valgrind.txt new file mode 100644 index 0000000000..35ab06a886 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCryptSimulationBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==1504328== Memcheck, a memory error detector +==1504328== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504328== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504328== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulationBoundaryCondition -malloc_debug -malloc_dump -memory_info +==1504328== Parent PID: 1488630 +==1504328== +==1504328== +==1504328== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504328== Open file descriptor 12: +==1504328== at 0x1192307D: pipe (pipe.c:29) +==1504328== by 0x1A6DF07D: ??? +==1504328== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504328== by 0x1122B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504328== by 0x111C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504328== by 0xFEBBD38: PetscInitialize (pinit.c:924) +==1504328== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504328== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504328== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504328== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504328== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504328== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504328== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504328== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) +==1504328== +==1504328== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504328== at 0x11927A1C: __open_nocancel (open64_nocancel.c:39) +==1504328== by 0x118ABBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504328== by 0xFD5F822: ??? +==1504328== by 0xFD5F96F: ??? +==1504328== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504328== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504328== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504328== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504328== by 0x1122B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504328== by 0x111C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504328== by 0xFEBBD38: PetscInitialize (pinit.c:924) +==1504328== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504328== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504328== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504328== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504328== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504328== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504328== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504328== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) +==1504328== +==1504328== Open file descriptor 115: +==1504328== +==1504328== +==1504328== Open file descriptor 112: +==1504328== +==1504328== +==1504328== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulationBoundaryCondition_valgrind.txt +==1504328== +==1504328== +==1504328== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504328== +==1504328== +==1504328== +==1504328== HEAP SUMMARY: +==1504328== in use at exit: 995,681 bytes in 13,915 blocks +==1504328== total heap usage: 82,131 allocs, 68,216 frees, 1,576,055,346 bytes allocated +==1504328== +==1504328== LEAK SUMMARY: +==1504328== definitely lost: 0 bytes in 0 blocks +==1504328== indirectly lost: 0 bytes in 0 blocks +==1504328== possibly lost: 0 bytes in 0 blocks +==1504328== still reachable: 136 bytes in 4 blocks +==1504328== suppressed: 995,545 bytes in 13,911 blocks +==1504328== Reachable blocks (those to which a pointer was found) are not shown. +==1504328== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504328== +==1504328== For lists of detected and suppressed errors, rerun with: -s +==1504328== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCryptStatistics_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCryptStatistics_valgrind.txt new file mode 100644 index 0000000000..2bfaef5605 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCryptStatistics_valgrind.txt @@ -0,0 +1,73 @@ +==1504452== Memcheck, a memory error detector +==1504452== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504452== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504452== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info +==1504452== Parent PID: 1488630 +==1504452== +==1504452== +==1504452== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504452== Open file descriptor 12: +==1504452== at 0x11A7D07D: pipe (pipe.c:29) +==1504452== by 0x1A6DF07D: ??? +==1504452== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504452== by 0x1129E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504452== by 0x11237D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504452== by 0xFF2ED38: PetscInitialize (pinit.c:924) +==1504452== by 0xFD9E153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504452== by 0xFD9E1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504452== by 0x1BB797: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504452== by 0x1B35DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504452== by 0x1B6DC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504452== by 0x1B6CBD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504452== by 0x1B72D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504452== by 0x1B1DD5: main (TestCryptStatistics.cpp:18) +==1504452== +==1504452== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504452== at 0x11A81A1C: __open_nocancel (open64_nocancel.c:39) +==1504452== by 0x11A05BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504452== by 0xFDD2822: ??? +==1504452== by 0xFDD296F: ??? +==1504452== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504452== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504452== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504452== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504452== by 0x1129E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504452== by 0x11237D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504452== by 0xFF2ED38: PetscInitialize (pinit.c:924) +==1504452== by 0xFD9E153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504452== by 0xFD9E1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504452== by 0x1BB797: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504452== by 0x1B35DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504452== by 0x1B6DC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504452== by 0x1B6CBD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504452== by 0x1B72D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504452== by 0x1B1DD5: main (TestCryptStatistics.cpp:18) +==1504452== +==1504452== Open file descriptor 115: +==1504452== +==1504452== +==1504452== Open file descriptor 112: +==1504452== +==1504452== +==1504452== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptStatistics_valgrind.txt +==1504452== +==1504452== +==1504452== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504452== +==1504452== +==1504452== +==1504452== HEAP SUMMARY: +==1504452== in use at exit: 995,510 bytes in 13,909 blocks +==1504452== total heap usage: 1,811,473 allocs, 1,797,564 frees, 1,677,063,026 bytes allocated +==1504452== +==1504452== LEAK SUMMARY: +==1504452== definitely lost: 0 bytes in 0 blocks +==1504452== indirectly lost: 0 bytes in 0 blocks +==1504452== possibly lost: 0 bytes in 0 blocks +==1504452== still reachable: 24 bytes in 2 blocks +==1504452== suppressed: 995,486 bytes in 13,907 blocks +==1504452== Reachable blocks (those to which a pointer was found) are not shown. +==1504452== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504452== +==1504452== For lists of detected and suppressed errors, rerun with: -s +==1504452== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestCvodeAdaptor_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCvodeAdaptor_valgrind.txt new file mode 100644 index 0000000000..bf828b79ae --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCvodeAdaptor_valgrind.txt @@ -0,0 +1,73 @@ +==1489402== Memcheck, a memory error detector +==1489402== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489402== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489402== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestCvodeAdaptor -malloc_debug -malloc_dump -memory_info +==1489402== Parent PID: 1488630 +==1489402== +==1489402== +==1489402== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489402== Open file descriptor 12: +==1489402== at 0x4F5507D: pipe (pipe.c:29) +==1489402== by 0xB1E807D: ??? +==1489402== by 0x8CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489402== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489402== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489402== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489402== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489402== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489402== by 0x126E96: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489402== by 0x1215DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489402== by 0x1243B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489402== by 0x124254: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489402== by 0x1248EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489402== by 0x11F185: main (TestCvodeAdaptor.cpp:19) +==1489402== +==1489402== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489402== at 0x4F59A1C: __open_nocancel (open64_nocancel.c:39) +==1489402== by 0x4EDDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489402== by 0x4B71822: ??? +==1489402== by 0x4B7196F: ??? +==1489402== by 0x8D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489402== by 0x8D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489402== by 0x8D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489402== by 0x8CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489402== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489402== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489402== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489402== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489402== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489402== by 0x126E96: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489402== by 0x1215DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489402== by 0x1243B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489402== by 0x124254: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489402== by 0x1248EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489402== by 0x11F185: main (TestCvodeAdaptor.cpp:19) +==1489402== +==1489402== Open file descriptor 115: +==1489402== +==1489402== +==1489402== Open file descriptor 112: +==1489402== +==1489402== +==1489402== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeAdaptor_valgrind.txt +==1489402== +==1489402== +==1489402== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489402== +==1489402== +==1489402== +==1489402== HEAP SUMMARY: +==1489402== in use at exit: 995,137 bytes in 13,913 blocks +==1489402== total heap usage: 62,491 allocs, 48,578 frees, 1,571,742,706 bytes allocated +==1489402== +==1489402== LEAK SUMMARY: +==1489402== definitely lost: 0 bytes in 0 blocks +==1489402== indirectly lost: 0 bytes in 0 blocks +==1489402== possibly lost: 0 bytes in 0 blocks +==1489402== still reachable: 24 bytes in 2 blocks +==1489402== suppressed: 995,113 bytes in 13,911 blocks +==1489402== Reachable blocks (those to which a pointer was found) are not shown. +==1489402== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489402== +==1489402== For lists of detected and suppressed errors, rerun with: -s +==1489402== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestCvodeCellsWithDataClamp_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCvodeCellsWithDataClamp_valgrind.txt new file mode 100644 index 0000000000..38be633d0a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCvodeCellsWithDataClamp_valgrind.txt @@ -0,0 +1,73 @@ +==1505220== Memcheck, a memory error detector +==1505220== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505220== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505220== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeCellsWithDataClamp -malloc_debug -malloc_dump -memory_info +==1505220== Parent PID: 1488630 +==1505220== +==1505220== +==1505220== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505220== Open file descriptor 12: +==1505220== at 0x9D9307D: pipe (pipe.c:29) +==1505220== by 0x13F9707D: ??? +==1505220== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505220== by 0x98DF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505220== by 0x9878D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505220== by 0x856FD38: PetscInitialize (pinit.c:924) +==1505220== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505220== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505220== by 0x12948D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505220== by 0x124351: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505220== by 0x126E16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505220== by 0x126CB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505220== by 0x12734D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505220== by 0x1222A5: main (TestCvodeCellsWithDataClamp.cpp:19) +==1505220== +==1505220== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505220== at 0x9D97A1C: __open_nocancel (open64_nocancel.c:39) +==1505220== by 0x9D1BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505220== by 0x8413822: ??? +==1505220== by 0x841396F: ??? +==1505220== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505220== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505220== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505220== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505220== by 0x98DF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505220== by 0x9878D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505220== by 0x856FD38: PetscInitialize (pinit.c:924) +==1505220== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505220== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505220== by 0x12948D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505220== by 0x124351: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505220== by 0x126E16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505220== by 0x126CB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505220== by 0x12734D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505220== by 0x1222A5: main (TestCvodeCellsWithDataClamp.cpp:19) +==1505220== +==1505220== Open file descriptor 115: +==1505220== +==1505220== +==1505220== Open file descriptor 112: +==1505220== +==1505220== +==1505220== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeCellsWithDataClamp_valgrind.txt +==1505220== +==1505220== +==1505220== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505220== +==1505220== +==1505220== +==1505220== HEAP SUMMARY: +==1505220== in use at exit: 1,001,937 bytes in 13,918 blocks +==1505220== total heap usage: 115,319 allocs, 101,401 frees, 1,714,957,022 bytes allocated +==1505220== +==1505220== LEAK SUMMARY: +==1505220== definitely lost: 0 bytes in 0 blocks +==1505220== indirectly lost: 0 bytes in 0 blocks +==1505220== possibly lost: 0 bytes in 0 blocks +==1505220== still reachable: 6,451 bytes in 11 blocks +==1505220== suppressed: 995,486 bytes in 13,907 blocks +==1505220== Reachable blocks (those to which a pointer was found) are not shown. +==1505220== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505220== +==1505220== For lists of detected and suppressed errors, rerun with: -s +==1505220== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestCvodeCells_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCvodeCells_valgrind.txt new file mode 100644 index 0000000000..05540f906e --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCvodeCells_valgrind.txt @@ -0,0 +1,73 @@ +==1505143== Memcheck, a memory error detector +==1505143== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505143== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505143== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeCells -malloc_debug -malloc_dump -memory_info +==1505143== Parent PID: 1488630 +==1505143== +==1505143== +==1505143== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505143== Open file descriptor 12: +==1505143== at 0x9D1F07D: pipe (pipe.c:29) +==1505143== by 0x13F9607D: ??? +==1505143== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505143== by 0x9952418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505143== by 0x98EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505143== by 0x85E2D38: PetscInitialize (pinit.c:924) +==1505143== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505143== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505143== by 0x1363CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505143== by 0x130B8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505143== by 0x133882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505143== by 0x133722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505143== by 0x133DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505143== by 0x12BB65: main (TestCvodeCells.cpp:19) +==1505143== +==1505143== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505143== at 0x9D23A1C: __open_nocancel (open64_nocancel.c:39) +==1505143== by 0x9CA7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505143== by 0x8486822: ??? +==1505143== by 0x848696F: ??? +==1505143== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505143== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505143== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505143== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505143== by 0x9952418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505143== by 0x98EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505143== by 0x85E2D38: PetscInitialize (pinit.c:924) +==1505143== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505143== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505143== by 0x1363CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505143== by 0x130B8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505143== by 0x133882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505143== by 0x133722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505143== by 0x133DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505143== by 0x12BB65: main (TestCvodeCells.cpp:19) +==1505143== +==1505143== Open file descriptor 115: +==1505143== +==1505143== +==1505143== Open file descriptor 112: +==1505143== +==1505143== +==1505143== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeCells_valgrind.txt +==1505143== +==1505143== +==1505143== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505143== +==1505143== +==1505143== +==1505143== HEAP SUMMARY: +==1505143== in use at exit: 997,317 bytes in 13,913 blocks +==1505143== total heap usage: 243,574 allocs, 229,661 frees, 1,597,022,022 bytes allocated +==1505143== +==1505143== LEAK SUMMARY: +==1505143== definitely lost: 0 bytes in 0 blocks +==1505143== indirectly lost: 0 bytes in 0 blocks +==1505143== possibly lost: 0 bytes in 0 blocks +==1505143== still reachable: 1,831 bytes in 6 blocks +==1505143== suppressed: 995,486 bytes in 13,907 blocks +==1505143== Reachable blocks (those to which a pointer was found) are not shown. +==1505143== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505143== +==1505143== For lists of detected and suppressed errors, rerun with: -s +==1505143== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestCvodeWithJacobian_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCvodeWithJacobian_valgrind.txt new file mode 100644 index 0000000000..658a454798 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCvodeWithJacobian_valgrind.txt @@ -0,0 +1,73 @@ +==1505221== Memcheck, a memory error detector +==1505221== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505221== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505221== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeWithJacobian -malloc_debug -malloc_dump -memory_info +==1505221== Parent PID: 1488630 +==1505221== +==1505221== +==1505221== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505221== Open file descriptor 12: +==1505221== at 0x9C6A07D: pipe (pipe.c:29) +==1505221== by 0x13F9707D: ??? +==1505221== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505221== by 0x989D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505221== by 0x9836D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505221== by 0x8507D38: PetscInitialize (pinit.c:924) +==1505221== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505221== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505221== by 0x117769: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505221== by 0x1133B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505221== by 0x1155A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505221== by 0x11549E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505221== by 0x115AB1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505221== by 0x111BB5: main (TestCvodeWithJacobian.cpp:18) +==1505221== +==1505221== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505221== at 0x9C6EA1C: __open_nocancel (open64_nocancel.c:39) +==1505221== by 0x9BF2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505221== by 0x9791822: ??? +==1505221== by 0x979196F: ??? +==1505221== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505221== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505221== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505221== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505221== by 0x989D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505221== by 0x9836D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505221== by 0x8507D38: PetscInitialize (pinit.c:924) +==1505221== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505221== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505221== by 0x117769: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505221== by 0x1133B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505221== by 0x1155A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505221== by 0x11549E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505221== by 0x115AB1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505221== by 0x111BB5: main (TestCvodeWithJacobian.cpp:18) +==1505221== +==1505221== Open file descriptor 115: +==1505221== +==1505221== +==1505221== Open file descriptor 112: +==1505221== +==1505221== +==1505221== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeWithJacobian_valgrind.txt +==1505221== +==1505221== +==1505221== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505221== +==1505221== +==1505221== +==1505221== HEAP SUMMARY: +==1505221== in use at exit: 995,510 bytes in 13,909 blocks +==1505221== total heap usage: 86,157 allocs, 72,248 frees, 1,575,645,702 bytes allocated +==1505221== +==1505221== LEAK SUMMARY: +==1505221== definitely lost: 0 bytes in 0 blocks +==1505221== indirectly lost: 0 bytes in 0 blocks +==1505221== possibly lost: 0 bytes in 0 blocks +==1505221== still reachable: 24 bytes in 2 blocks +==1505221== suppressed: 995,486 bytes in 13,907 blocks +==1505221== Reachable blocks (those to which a pointer was found) are not shown. +==1505221== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505221== +==1505221== For lists of detected and suppressed errors, rerun with: -s +==1505221== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestCwd_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCwd_valgrind.txt new file mode 100644 index 0000000000..060eab90a4 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCwd_valgrind.txt @@ -0,0 +1,73 @@ +==1488638== Memcheck, a memory error detector +==1488638== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488638== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488638== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCwd -malloc_debug -malloc_dump -memory_info +==1488638== Parent PID: 1488630 +==1488638== +==1488638== +==1488638== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488638== Open file descriptor 12: +==1488638== at 0x616B07D: pipe (pipe.c:29) +==1488638== by 0xAEA607D: ??? +==1488638== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488638== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488638== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488638== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488638== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488638== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488638== by 0x1130E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488638== by 0x10EFB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488638== by 0x1111A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488638== by 0x11109E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488638== by 0x1116B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488638== by 0x10D7B5: main (TestCwd.cpp:18) +==1488638== +==1488638== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488638== at 0x616FA1C: __open_nocancel (open64_nocancel.c:39) +==1488638== by 0x60F3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488638== by 0x5CAC822: ??? +==1488638== by 0x5CAC96F: ??? +==1488638== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488638== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488638== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488638== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488638== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488638== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488638== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488638== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488638== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488638== by 0x1130E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488638== by 0x10EFB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488638== by 0x1111A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488638== by 0x11109E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488638== by 0x1116B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488638== by 0x10D7B5: main (TestCwd.cpp:18) +==1488638== +==1488638== Open file descriptor 115: +==1488638== +==1488638== +==1488638== Open file descriptor 112: +==1488638== +==1488638== +==1488638== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCwd_valgrind.txt +==1488638== +==1488638== +==1488638== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488638== +==1488638== +==1488638== +==1488638== HEAP SUMMARY: +==1488638== in use at exit: 995,073 bytes in 13,913 blocks +==1488638== total heap usage: 57,569 allocs, 43,656 frees, 1,571,242,802 bytes allocated +==1488638== +==1488638== LEAK SUMMARY: +==1488638== definitely lost: 0 bytes in 0 blocks +==1488638== indirectly lost: 0 bytes in 0 blocks +==1488638== possibly lost: 0 bytes in 0 blocks +==1488638== still reachable: 24 bytes in 2 blocks +==1488638== suppressed: 995,049 bytes in 13,911 blocks +==1488638== Reachable blocks (those to which a pointer was found) are not shown. +==1488638== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488638== +==1488638== For lists of detected and suppressed errors, rerun with: -s +==1488638== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestCylindrical2dMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCylindrical2dMesh_valgrind.txt new file mode 100644 index 0000000000..79ab891a82 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCylindrical2dMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489118== Memcheck, a memory error detector +==1489118== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489118== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489118== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dMesh -malloc_debug -malloc_dump -memory_info +==1489118== Parent PID: 1488630 +==1489118== +==1489118== +==1489118== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489118== Open file descriptor 12: +==1489118== at 0x7EA407D: pipe (pipe.c:29) +==1489118== by 0xFD3507D: ??? +==1489118== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489118== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489118== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489118== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489118== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489118== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489118== by 0x12A575: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489118== by 0x124FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489118== by 0x127D3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489118== by 0x127BDF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489118== by 0x128275: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489118== by 0x123425: main (TestCylindrical2dMesh.cpp:19) +==1489118== +==1489118== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489118== at 0x7EA8A1C: __open_nocancel (open64_nocancel.c:39) +==1489118== by 0x7E2CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489118== by 0x61F7822: ??? +==1489118== by 0x61F796F: ??? +==1489118== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489118== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489118== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489118== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489118== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489118== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489118== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489118== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489118== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489118== by 0x12A575: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489118== by 0x124FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489118== by 0x127D3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489118== by 0x127BDF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489118== by 0x128275: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489118== by 0x123425: main (TestCylindrical2dMesh.cpp:19) +==1489118== +==1489118== Open file descriptor 115: +==1489118== +==1489118== +==1489118== Open file descriptor 112: +==1489118== +==1489118== +==1489118== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dMesh_valgrind.txt +==1489118== +==1489118== +==1489118== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489118== +==1489118== +==1489118== +==1489118== HEAP SUMMARY: +==1489118== in use at exit: 995,457 bytes in 13,913 blocks +==1489118== total heap usage: 177,498 allocs, 163,585 frees, 1,589,961,531 bytes allocated +==1489118== +==1489118== LEAK SUMMARY: +==1489118== definitely lost: 0 bytes in 0 blocks +==1489118== indirectly lost: 0 bytes in 0 blocks +==1489118== possibly lost: 0 bytes in 0 blocks +==1489118== still reachable: 24 bytes in 2 blocks +==1489118== suppressed: 995,433 bytes in 13,911 blocks +==1489118== Reachable blocks (those to which a pointer was found) are not shown. +==1489118== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489118== +==1489118== For lists of detected and suppressed errors, rerun with: -s +==1489118== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCylindrical2dNodesOnlyMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCylindrical2dNodesOnlyMesh_valgrind.txt new file mode 100644 index 0000000000..bb8108e779 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCylindrical2dNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489120== Memcheck, a memory error detector +==1489120== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489120== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489120== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==1489120== Parent PID: 1488630 +==1489120== +==1489120== +==1489120== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489120== Open file descriptor 12: +==1489120== at 0x69ED07D: pipe (pipe.c:29) +==1489120== by 0xFD3507D: ??? +==1489120== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489120== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489120== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489120== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489120== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489120== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489120== by 0x126F1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489120== by 0x121B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489120== by 0x1248C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489120== by 0x124768: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489120== by 0x124DFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489120== by 0x11FFC5: main (TestCylindrical2dNodesOnlyMesh.cpp:19) +==1489120== +==1489120== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489120== at 0x69F1A1C: __open_nocancel (open64_nocancel.c:39) +==1489120== by 0x6975BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489120== by 0x61F7822: ??? +==1489120== by 0x61F796F: ??? +==1489120== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489120== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489120== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489120== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489120== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489120== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489120== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489120== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489120== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489120== by 0x126F1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489120== by 0x121B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489120== by 0x1248C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489120== by 0x124768: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489120== by 0x124DFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489120== by 0x11FFC5: main (TestCylindrical2dNodesOnlyMesh.cpp:19) +==1489120== +==1489120== Open file descriptor 115: +==1489120== +==1489120== +==1489120== Open file descriptor 112: +==1489120== +==1489120== +==1489120== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dNodesOnlyMesh_valgrind.txt +==1489120== +==1489120== +==1489120== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489120== +==1489120== +==1489120== +==1489120== HEAP SUMMARY: +==1489120== in use at exit: 995,457 bytes in 13,913 blocks +==1489120== total heap usage: 71,014 allocs, 57,101 frees, 1,574,392,982 bytes allocated +==1489120== +==1489120== LEAK SUMMARY: +==1489120== definitely lost: 0 bytes in 0 blocks +==1489120== indirectly lost: 0 bytes in 0 blocks +==1489120== possibly lost: 0 bytes in 0 blocks +==1489120== still reachable: 24 bytes in 2 blocks +==1489120== suppressed: 995,433 bytes in 13,911 blocks +==1489120== Reachable blocks (those to which a pointer was found) are not shown. +==1489120== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489120== +==1489120== For lists of detected and suppressed errors, rerun with: -s +==1489120== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestCylindrical2dVertexMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCylindrical2dVertexMesh_valgrind.txt new file mode 100644 index 0000000000..ecd478ecc0 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCylindrical2dVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489225== Memcheck, a memory error detector +==1489225== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489225== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489225== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dVertexMesh -malloc_debug -malloc_dump -memory_info +==1489225== Parent PID: 1488630 +==1489225== +==1489225== +==1489225== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489225== Open file descriptor 12: +==1489225== at 0x7EA407D: pipe (pipe.c:29) +==1489225== by 0xFD3507D: ??? +==1489225== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489225== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489225== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489225== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489225== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489225== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489225== by 0x129413: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489225== by 0x123FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489225== by 0x126C38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489225== by 0x126AD9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489225== by 0x12716F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489225== by 0x1223E5: main (TestCylindrical2dVertexMesh.cpp:19) +==1489225== +==1489225== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489225== at 0x7EA8A1C: __open_nocancel (open64_nocancel.c:39) +==1489225== by 0x7E2CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489225== by 0x61F7822: ??? +==1489225== by 0x61F796F: ??? +==1489225== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489225== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489225== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489225== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489225== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489225== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489225== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489225== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489225== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489225== by 0x129413: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489225== by 0x123FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489225== by 0x126C38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489225== by 0x126AD9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489225== by 0x12716F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489225== by 0x1223E5: main (TestCylindrical2dVertexMesh.cpp:19) +==1489225== +==1489225== Open file descriptor 115: +==1489225== +==1489225== +==1489225== Open file descriptor 112: +==1489225== +==1489225== +==1489225== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dVertexMesh_valgrind.txt +==1489225== +==1489225== +==1489225== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489225== +==1489225== +==1489225== +==1489225== HEAP SUMMARY: +==1489225== in use at exit: 995,457 bytes in 13,913 blocks +==1489225== total heap usage: 164,628 allocs, 150,715 frees, 1,581,644,962 bytes allocated +==1489225== +==1489225== LEAK SUMMARY: +==1489225== definitely lost: 0 bytes in 0 blocks +==1489225== indirectly lost: 0 bytes in 0 blocks +==1489225== possibly lost: 0 bytes in 0 blocks +==1489225== still reachable: 24 bytes in 2 blocks +==1489225== suppressed: 995,433 bytes in 13,911 blocks +==1489225== Reachable blocks (those to which a pointer was found) are not shown. +==1489225== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489225== +==1489225== For lists of detected and suppressed errors, rerun with: -s +==1489225== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestCylindricalHoneycombMeshGenerator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCylindricalHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 0000000000..2429e60120 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCylindricalHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==1489139== Memcheck, a memory error detector +==1489139== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489139== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489139== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindricalHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==1489139== Parent PID: 1488630 +==1489139== +==1489139== +==1489139== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489139== Open file descriptor 12: +==1489139== at 0x7D7907D: pipe (pipe.c:29) +==1489139== by 0xFD3507D: ??? +==1489139== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489139== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489139== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489139== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489139== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489139== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489139== by 0x11A3C5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489139== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489139== by 0x1181AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489139== by 0x11804C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489139== by 0x1186E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489139== by 0x113AF5: main (TestCylindricalHoneycombMeshGenerator.cpp:19) +==1489139== +==1489139== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489139== at 0x7D7DA1C: __open_nocancel (open64_nocancel.c:39) +==1489139== by 0x7D01BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489139== by 0x7575822: ??? +==1489139== by 0x757596F: ??? +==1489139== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489139== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489139== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489139== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489139== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489139== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489139== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489139== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489139== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489139== by 0x11A3C5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489139== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489139== by 0x1181AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489139== by 0x11804C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489139== by 0x1186E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489139== by 0x113AF5: main (TestCylindricalHoneycombMeshGenerator.cpp:19) +==1489139== +==1489139== Open file descriptor 115: +==1489139== +==1489139== +==1489139== Open file descriptor 112: +==1489139== +==1489139== +==1489139== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindricalHoneycombMeshGenerator_valgrind.txt +==1489139== +==1489139== +==1489139== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489139== +==1489139== +==1489139== +==1489139== HEAP SUMMARY: +==1489139== in use at exit: 995,457 bytes in 13,913 blocks +==1489139== total heap usage: 104,540 allocs, 90,627 frees, 1,574,791,097 bytes allocated +==1489139== +==1489139== LEAK SUMMARY: +==1489139== definitely lost: 0 bytes in 0 blocks +==1489139== indirectly lost: 0 bytes in 0 blocks +==1489139== possibly lost: 0 bytes in 0 blocks +==1489139== still reachable: 24 bytes in 2 blocks +==1489139== suppressed: 995,433 bytes in 13,911 blocks +==1489139== Reachable blocks (those to which a pointer was found) are not shown. +==1489139== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489139== +==1489139== For lists of detected and suppressed errors, rerun with: -s +==1489139== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 0000000000..2e5c1fc209 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==1489258== Memcheck, a memory error detector +==1489258== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489258== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489258== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindricalHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==1489258== Parent PID: 1488630 +==1489258== +==1489258== +==1489258== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489258== Open file descriptor 12: +==1489258== at 0x7D7907D: pipe (pipe.c:29) +==1489258== by 0xFD3507D: ??? +==1489258== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489258== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489258== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489258== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489258== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489258== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489258== by 0x11A15D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489258== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489258== by 0x1162D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489258== by 0x116176: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489258== by 0x11680D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489258== by 0x111D75: main (TestCylindricalHoneycombVertexMeshGenerator.cpp:19) +==1489258== +==1489258== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489258== at 0x7D7DA1C: __open_nocancel (open64_nocancel.c:39) +==1489258== by 0x7D01BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489258== by 0x7575822: ??? +==1489258== by 0x757596F: ??? +==1489258== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489258== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489258== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489258== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489258== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489258== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489258== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489258== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489258== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489258== by 0x11A15D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489258== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489258== by 0x1162D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489258== by 0x116176: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489258== by 0x11680D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489258== by 0x111D75: main (TestCylindricalHoneycombVertexMeshGenerator.cpp:19) +==1489258== +==1489258== Open file descriptor 115: +==1489258== +==1489258== +==1489258== Open file descriptor 112: +==1489258== +==1489258== +==1489258== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt +==1489258== +==1489258== +==1489258== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489258== +==1489258== +==1489258== +==1489258== HEAP SUMMARY: +==1489258== in use at exit: 995,457 bytes in 13,913 blocks +==1489258== total heap usage: 63,136 allocs, 49,223 frees, 1,571,918,026 bytes allocated +==1489258== +==1489258== LEAK SUMMARY: +==1489258== definitely lost: 0 bytes in 0 blocks +==1489258== indirectly lost: 0 bytes in 0 blocks +==1489258== possibly lost: 0 bytes in 0 blocks +==1489258== still reachable: 24 bytes in 2 blocks +==1489258== suppressed: 995,433 bytes in 13,911 blocks +==1489258== Reachable blocks (those to which a pointer was found) are not shown. +==1489258== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489258== +==1489258== For lists of detected and suppressed errors, rerun with: -s +==1489258== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestDebug_valgrind.txt b/log-files/2024-02-21_13-45-57/TestDebug_valgrind.txt new file mode 100644 index 0000000000..49c2377ccf --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestDebug_valgrind.txt @@ -0,0 +1,73 @@ +==1488639== Memcheck, a memory error detector +==1488639== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488639== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488639== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestDebug -malloc_debug -malloc_dump -memory_info +==1488639== Parent PID: 1488630 +==1488639== +==1488639== +==1488639== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488639== Open file descriptor 12: +==1488639== at 0x4CB407D: pipe (pipe.c:29) +==1488639== by 0xAEA607D: ??? +==1488639== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488639== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488639== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488639== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488639== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488639== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488639== by 0x112F42: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488639== by 0x10EE33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488639== by 0x11100C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488639== by 0x110F08: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488639== by 0x11151B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488639== by 0x10D635: main (TestDebug.cpp:18) +==1488639== +==1488639== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488639== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==1488639== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488639== by 0x492E822: ??? +==1488639== by 0x492E96F: ??? +==1488639== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488639== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488639== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488639== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488639== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488639== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488639== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488639== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488639== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488639== by 0x112F42: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488639== by 0x10EE33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488639== by 0x11100C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488639== by 0x110F08: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488639== by 0x11151B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488639== by 0x10D635: main (TestDebug.cpp:18) +==1488639== +==1488639== Open file descriptor 115: +==1488639== +==1488639== +==1488639== Open file descriptor 112: +==1488639== +==1488639== +==1488639== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDebug_valgrind.txt +==1488639== +==1488639== +==1488639== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488639== +==1488639== +==1488639== +==1488639== HEAP SUMMARY: +==1488639== in use at exit: 995,073 bytes in 13,913 blocks +==1488639== total heap usage: 57,571 allocs, 43,658 frees, 1,573,644,582 bytes allocated +==1488639== +==1488639== LEAK SUMMARY: +==1488639== definitely lost: 0 bytes in 0 blocks +==1488639== indirectly lost: 0 bytes in 0 blocks +==1488639== possibly lost: 0 bytes in 0 blocks +==1488639== still reachable: 24 bytes in 2 blocks +==1488639== suppressed: 995,049 bytes in 13,911 blocks +==1488639== Reachable blocks (those to which a pointer was found) are not shown. +==1488639== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488639== +==1488639== For lists of detected and suppressed errors, rerun with: -s +==1488639== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestDeltaNotchModifier_valgrind.txt b/log-files/2024-02-21_13-45-57/TestDeltaNotchModifier_valgrind.txt new file mode 100644 index 0000000000..6f1d3b575b --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestDeltaNotchModifier_valgrind.txt @@ -0,0 +1,73 @@ +==1490419== Memcheck, a memory error detector +==1490419== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490419== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490419== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDeltaNotchModifier -malloc_debug -malloc_dump -memory_info +==1490419== Parent PID: 1488630 +==1490419== +==1490419== +==1490419== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490419== Open file descriptor 12: +==1490419== at 0xEBAC07D: pipe (pipe.c:29) +==1490419== by 0x18A1D07D: ??? +==1490419== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490419== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490419== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490419== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490419== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490419== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490419== by 0x208508: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490419== by 0x1FFF99: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490419== by 0x203992: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490419== by 0x203832: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490419== by 0x203EC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490419== by 0x1FE3B5: main (TestDeltaNotchModifier.cpp:19) +==1490419== +==1490419== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490419== at 0xEBB0A1C: __open_nocancel (open64_nocancel.c:39) +==1490419== by 0xEB34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490419== by 0xE49F822: ??? +==1490419== by 0xE49F96F: ??? +==1490419== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490419== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490419== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490419== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490419== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490419== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490419== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490419== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490419== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490419== by 0x208508: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490419== by 0x1FFF99: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490419== by 0x203992: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490419== by 0x203832: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490419== by 0x203EC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490419== by 0x1FE3B5: main (TestDeltaNotchModifier.cpp:19) +==1490419== +==1490419== Open file descriptor 115: +==1490419== +==1490419== +==1490419== Open file descriptor 112: +==1490419== +==1490419== +==1490419== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDeltaNotchModifier_valgrind.txt +==1490419== +==1490419== +==1490419== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490419== +==1490419== +==1490419== +==1490419== HEAP SUMMARY: +==1490419== in use at exit: 995,526 bytes in 13,910 blocks +==1490419== total heap usage: 5,570,312 allocs, 5,556,402 frees, 9,120,827,431 bytes allocated +==1490419== +==1490419== LEAK SUMMARY: +==1490419== definitely lost: 0 bytes in 0 blocks +==1490419== indirectly lost: 0 bytes in 0 blocks +==1490419== possibly lost: 0 bytes in 0 blocks +==1490419== still reachable: 56 bytes in 3 blocks +==1490419== suppressed: 995,470 bytes in 13,907 blocks +==1490419== Reachable blocks (those to which a pointer was found) are not shown. +==1490419== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490419== +==1490419== For lists of detected and suppressed errors, rerun with: -s +==1490419== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-02-21_13-45-57/TestDeltaNotchOdeSystem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestDeltaNotchOdeSystem_valgrind.txt new file mode 100644 index 0000000000..9be147da80 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestDeltaNotchOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==1490114== Memcheck, a memory error detector +==1490114== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490114== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490114== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDeltaNotchOdeSystem -malloc_debug -malloc_dump -memory_info +==1490114== Parent PID: 1488630 +==1490114== +==1490114== +==1490114== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490114== Open file descriptor 12: +==1490114== at 0xE69807D: pipe (pipe.c:29) +==1490114== by 0x18A1D07D: ??? +==1490114== by 0x12FC34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490114== by 0xE2E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490114== by 0xE27ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490114== by 0xCF75D38: PetscInitialize (pinit.c:924) +==1490114== by 0xCDE5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490114== by 0xCDE51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490114== by 0x123193: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490114== by 0x11E6C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490114== by 0x120CDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490114== by 0x120BD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490114== by 0x1211EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490114== by 0x11CEC5: main (TestDeltaNotchOdeSystem.cpp:18) +==1490114== +==1490114== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490114== at 0xE69CA1C: __open_nocancel (open64_nocancel.c:39) +==1490114== by 0xE620BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490114== by 0xCE19822: ??? +==1490114== by 0xCE1996F: ??? +==1490114== by 0x130686DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490114== by 0x13068938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490114== by 0x1301E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490114== by 0x12FC32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490114== by 0xE2E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490114== by 0xE27ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490114== by 0xCF75D38: PetscInitialize (pinit.c:924) +==1490114== by 0xCDE5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490114== by 0xCDE51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490114== by 0x123193: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490114== by 0x11E6C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490114== by 0x120CDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490114== by 0x120BD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490114== by 0x1211EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490114== by 0x11CEC5: main (TestDeltaNotchOdeSystem.cpp:18) +==1490114== +==1490114== Open file descriptor 115: +==1490114== +==1490114== +==1490114== Open file descriptor 112: +==1490114== +==1490114== +==1490114== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDeltaNotchOdeSystem_valgrind.txt +==1490114== +==1490114== +==1490114== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490114== +==1490114== +==1490114== +==1490114== HEAP SUMMARY: +==1490114== in use at exit: 995,553 bytes in 13,913 blocks +==1490114== total heap usage: 65,536 allocs, 51,623 frees, 1,571,973,596 bytes allocated +==1490114== +==1490114== LEAK SUMMARY: +==1490114== definitely lost: 0 bytes in 0 blocks +==1490114== indirectly lost: 0 bytes in 0 blocks +==1490114== possibly lost: 0 bytes in 0 blocks +==1490114== still reachable: 24 bytes in 2 blocks +==1490114== suppressed: 995,529 bytes in 13,911 blocks +==1490114== Reachable blocks (those to which a pointer was found) are not shown. +==1490114== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490114== +==1490114== For lists of detected and suppressed errors, rerun with: -s +==1490114== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestDiscreteSystemForceCalculator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestDiscreteSystemForceCalculator_valgrind.txt new file mode 100644 index 0000000000..3010304230 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestDiscreteSystemForceCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==1490269== Memcheck, a memory error detector +==1490269== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490269== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490269== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDiscreteSystemForceCalculator -malloc_debug -malloc_dump -memory_info +==1490269== Parent PID: 1488630 +==1490269== +==1490269== +==1490269== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490269== Open file descriptor 12: +==1490269== at 0x1002107D: pipe (pipe.c:29) +==1490269== by 0x18A1D07D: ??? +==1490269== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490269== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490269== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490269== by 0xE593D38: PetscInitialize (pinit.c:924) +==1490269== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490269== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490269== by 0x12A32F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490269== by 0x123F2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490269== by 0x1269BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490269== by 0x12685E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490269== by 0x126EF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490269== by 0x122355: main (TestDiscreteSystemForceCalculator.cpp:19) +==1490269== +==1490269== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490269== at 0x10025A1C: __open_nocancel (open64_nocancel.c:39) +==1490269== by 0xFFA9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490269== by 0xF81D822: ??? +==1490269== by 0xF81D96F: ??? +==1490269== by 0x140296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490269== by 0x14029938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490269== by 0x13FDF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490269== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490269== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490269== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490269== by 0xE593D38: PetscInitialize (pinit.c:924) +==1490269== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490269== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490269== by 0x12A32F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490269== by 0x123F2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490269== by 0x1269BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490269== by 0x12685E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490269== by 0x126EF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490269== by 0x122355: main (TestDiscreteSystemForceCalculator.cpp:19) +==1490269== +==1490269== Open file descriptor 115: +==1490269== +==1490269== +==1490269== Open file descriptor 112: +==1490269== +==1490269== +==1490269== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDiscreteSystemForceCalculator_valgrind.txt +==1490269== +==1490269== +==1490269== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490269== +==1490269== +==1490269== +==1490269== HEAP SUMMARY: +==1490269== in use at exit: 995,585 bytes in 13,914 blocks +==1490269== total heap usage: 135,254 allocs, 121,340 frees, 1,578,519,860 bytes allocated +==1490269== +==1490269== LEAK SUMMARY: +==1490269== definitely lost: 0 bytes in 0 blocks +==1490269== indirectly lost: 0 bytes in 0 blocks +==1490269== possibly lost: 0 bytes in 0 blocks +==1490269== still reachable: 56 bytes in 3 blocks +==1490269== suppressed: 995,529 bytes in 13,911 blocks +==1490269== Reachable blocks (those to which a pointer was found) are not shown. +==1490269== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490269== +==1490269== For lists of detected and suppressed errors, rerun with: -s +==1490269== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestDistanceMapCalculator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestDistanceMapCalculator_valgrind.txt new file mode 100644 index 0000000000..7ea41eb2ce --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestDistanceMapCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==1489210== Memcheck, a memory error detector +==1489210== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489210== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489210== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistanceMapCalculator -malloc_debug -malloc_dump -memory_info +==1489210== Parent PID: 1488630 +==1489210== +==1489210== +==1489210== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489210== Open file descriptor 12: +==1489210== at 0x69AB07D: pipe (pipe.c:29) +==1489210== by 0xFD3507D: ??? +==1489210== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489210== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489210== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489210== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489210== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489210== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489210== by 0x121308: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489210== by 0x11C90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489210== by 0x11F030: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489210== by 0x11EED0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489210== by 0x11F567: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489210== by 0x11AD35: main (TestDistanceMapCalculator.cpp:19) +==1489210== +==1489210== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489210== at 0x69AFA1C: __open_nocancel (open64_nocancel.c:39) +==1489210== by 0x6933BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489210== by 0x61F7822: ??? +==1489210== by 0x61F796F: ??? +==1489210== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489210== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489210== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489210== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489210== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489210== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489210== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489210== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489210== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489210== by 0x121308: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489210== by 0x11C90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489210== by 0x11F030: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489210== by 0x11EED0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489210== by 0x11F567: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489210== by 0x11AD35: main (TestDistanceMapCalculator.cpp:19) +==1489210== +==1489210== Open file descriptor 115: +==1489210== +==1489210== +==1489210== Open file descriptor 112: +==1489210== +==1489210== +==1489210== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistanceMapCalculator_valgrind.txt +==1489210== +==1489210== +==1489210== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489210== +==1489210== +==1489210== +==1489210== HEAP SUMMARY: +==1489210== in use at exit: 997,950 bytes in 13,910 blocks +==1489210== total heap usage: 7,664,332 allocs, 7,650,422 frees, 1,837,426,410 bytes allocated +==1489210== +==1489210== LEAK SUMMARY: +==1489210== definitely lost: 0 bytes in 0 blocks +==1489210== indirectly lost: 0 bytes in 0 blocks +==1489210== possibly lost: 0 bytes in 0 blocks +==1489210== still reachable: 2,576 bytes in 3 blocks +==1489210== suppressed: 995,374 bytes in 13,907 blocks +==1489210== Reachable blocks (those to which a pointer was found) are not shown. +==1489210== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489210== +==1489210== For lists of detected and suppressed errors, rerun with: -s +==1489210== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2024-02-21_13-45-57/TestDistributedBoxCollection_valgrind.txt b/log-files/2024-02-21_13-45-57/TestDistributedBoxCollection_valgrind.txt new file mode 100644 index 0000000000..ddb2039691 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestDistributedBoxCollection_valgrind.txt @@ -0,0 +1,73 @@ +==1489209== Memcheck, a memory error detector +==1489209== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489209== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489209== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedBoxCollection -malloc_debug -malloc_dump -memory_info +==1489209== Parent PID: 1488630 +==1489209== +==1489209== +==1489209== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489209== Open file descriptor 12: +==1489209== at 0x7EA407D: pipe (pipe.c:29) +==1489209== by 0xFD3507D: ??? +==1489209== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489209== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489209== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489209== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489209== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489209== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489209== by 0x161C60: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489209== by 0x15BFE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489209== by 0x15F37A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489209== by 0x15F21A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489209== by 0x15F8B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489209== by 0x15A405: main (TestDistributedBoxCollection.cpp:19) +==1489209== +==1489209== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489209== at 0x7EA8A1C: __open_nocancel (open64_nocancel.c:39) +==1489209== by 0x7E2CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489209== by 0x61F7822: ??? +==1489209== by 0x61F796F: ??? +==1489209== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489209== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489209== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489209== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489209== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489209== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489209== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489209== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489209== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489209== by 0x161C60: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489209== by 0x15BFE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489209== by 0x15F37A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489209== by 0x15F21A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489209== by 0x15F8B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489209== by 0x15A405: main (TestDistributedBoxCollection.cpp:19) +==1489209== +==1489209== Open file descriptor 115: +==1489209== +==1489209== +==1489209== Open file descriptor 112: +==1489209== +==1489209== +==1489209== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedBoxCollection_valgrind.txt +==1489209== +==1489209== +==1489209== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489209== +==1489209== +==1489209== +==1489209== HEAP SUMMARY: +==1489209== in use at exit: 995,457 bytes in 13,913 blocks +==1489209== total heap usage: 192,196 allocs, 178,283 frees, 1,673,864,238 bytes allocated +==1489209== +==1489209== LEAK SUMMARY: +==1489209== definitely lost: 0 bytes in 0 blocks +==1489209== indirectly lost: 0 bytes in 0 blocks +==1489209== possibly lost: 0 bytes in 0 blocks +==1489209== still reachable: 24 bytes in 2 blocks +==1489209== suppressed: 995,433 bytes in 13,911 blocks +==1489209== Reachable blocks (those to which a pointer was found) are not shown. +==1489209== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489209== +==1489209== For lists of detected and suppressed errors, rerun with: -s +==1489209== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestDistributedQuadraticMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestDistributedQuadraticMesh_valgrind.txt new file mode 100644 index 0000000000..33879a7100 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestDistributedQuadraticMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489009== Memcheck, a memory error detector +==1489009== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489009== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489009== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedQuadraticMesh -malloc_debug -malloc_dump -memory_info +==1489009== Parent PID: 1488630 +==1489009== +==1489009== +==1489009== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489009== Open file descriptor 12: +==1489009== at 0x69ED07D: pipe (pipe.c:29) +==1489009== by 0xFD3507D: ??? +==1489009== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489009== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489009== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489009== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489009== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489009== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489009== by 0x12A04E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489009== by 0x124E9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489009== by 0x127B7A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489009== by 0x127A1A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489009== by 0x1280B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489009== by 0x1232C5: main (TestDistributedQuadraticMesh.cpp:19) +==1489009== +==1489009== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489009== at 0x69F1A1C: __open_nocancel (open64_nocancel.c:39) +==1489009== by 0x6975BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489009== by 0x61F7822: ??? +==1489009== by 0x61F796F: ??? +==1489009== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489009== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489009== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489009== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489009== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489009== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489009== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489009== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489009== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489009== by 0x12A04E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489009== by 0x124E9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489009== by 0x127B7A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489009== by 0x127A1A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489009== by 0x1280B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489009== by 0x1232C5: main (TestDistributedQuadraticMesh.cpp:19) +==1489009== +==1489009== Open file descriptor 115: +==1489009== +==1489009== +==1489009== Open file descriptor 112: +==1489009== +==1489009== +==1489009== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedQuadraticMesh_valgrind.txt +==1489009== +==1489009== +==1489009== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489009== +==1489009== +==1489009== +==1489009== HEAP SUMMARY: +==1489009== in use at exit: 995,457 bytes in 13,913 blocks +==1489009== total heap usage: 216,628 allocs, 202,715 frees, 1,579,802,489 bytes allocated +==1489009== +==1489009== LEAK SUMMARY: +==1489009== definitely lost: 0 bytes in 0 blocks +==1489009== indirectly lost: 0 bytes in 0 blocks +==1489009== possibly lost: 0 bytes in 0 blocks +==1489009== still reachable: 24 bytes in 2 blocks +==1489009== suppressed: 995,433 bytes in 13,911 blocks +==1489009== Reachable blocks (those to which a pointer was found) are not shown. +==1489009== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489009== +==1489009== For lists of detected and suppressed errors, rerun with: -s +==1489009== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestDistributedTetrahedralMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestDistributedTetrahedralMesh_valgrind.txt new file mode 100644 index 0000000000..482a69436f --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestDistributedTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489010== Memcheck, a memory error detector +==1489010== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489010== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489010== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==1489010== Parent PID: 1488630 +==1489010== +==1489010== +==1489010== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489010== Open file descriptor 12: +==1489010== at 0x7EA407D: pipe (pipe.c:29) +==1489010== by 0xFD3507D: ??? +==1489010== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489010== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489010== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489010== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489010== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489010== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489010== by 0x1464DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489010== by 0x13EB23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489010== by 0x141FCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489010== by 0x141E6E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489010== by 0x142505: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489010== by 0x13CE05: main (TestDistributedTetrahedralMesh.cpp:19) +==1489010== +==1489010== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489010== at 0x7EA8A1C: __open_nocancel (open64_nocancel.c:39) +==1489010== by 0x7E2CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489010== by 0x61F7822: ??? +==1489010== by 0x61F796F: ??? +==1489010== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489010== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489010== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489010== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489010== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489010== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489010== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489010== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489010== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489010== by 0x1464DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489010== by 0x13EB23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489010== by 0x141FCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489010== by 0x141E6E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489010== by 0x142505: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489010== by 0x13CE05: main (TestDistributedTetrahedralMesh.cpp:19) +==1489010== +==1489010== Open file descriptor 115: +==1489010== +==1489010== +==1489010== Open file descriptor 112: +==1489010== +==1489010== +==1489010== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedTetrahedralMesh_valgrind.txt +==1489010== +==1489010== +==1489010== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489010== +==1489010== +==1489010== +==1489010== HEAP SUMMARY: +==1489010== in use at exit: 997,950 bytes in 13,910 blocks +==1489010== total heap usage: 3,391,019 allocs, 3,377,109 frees, 1,691,050,061 bytes allocated +==1489010== +==1489010== LEAK SUMMARY: +==1489010== definitely lost: 0 bytes in 0 blocks +==1489010== indirectly lost: 0 bytes in 0 blocks +==1489010== possibly lost: 0 bytes in 0 blocks +==1489010== still reachable: 2,576 bytes in 3 blocks +==1489010== suppressed: 995,374 bytes in 13,907 blocks +==1489010== Reachable blocks (those to which a pointer was found) are not shown. +==1489010== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489010== +==1489010== For lists of detected and suppressed errors, rerun with: -s +==1489010== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestDistributedVector_valgrind.txt b/log-files/2024-02-21_13-45-57/TestDistributedVector_valgrind.txt new file mode 100644 index 0000000000..42222d9c1d --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestDistributedVector_valgrind.txt @@ -0,0 +1,73 @@ +==1488640== Memcheck, a memory error detector +==1488640== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488640== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488640== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestDistributedVector -malloc_debug -malloc_dump -memory_info +==1488640== Parent PID: 1488630 +==1488640== +==1488640== +==1488640== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488640== Open file descriptor 12: +==1488640== at 0x607607D: pipe (pipe.c:29) +==1488640== by 0xAEA607D: ??? +==1488640== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488640== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488640== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488640== by 0x4A8AD38: PetscInitialize (pinit.c:924) +==1488640== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488640== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488640== by 0x129F94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488640== by 0x124F49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488640== by 0x127BA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488640== by 0x127A48: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488640== by 0x1280DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488640== by 0x123365: main (TestDistributedVector.cpp:19) +==1488640== +==1488640== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488640== at 0x607AA1C: __open_nocancel (open64_nocancel.c:39) +==1488640== by 0x5FFEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488640== by 0x492E822: ??? +==1488640== by 0x492E96F: ??? +==1488640== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488640== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488640== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488640== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488640== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488640== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488640== by 0x4A8AD38: PetscInitialize (pinit.c:924) +==1488640== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488640== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488640== by 0x129F94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488640== by 0x124F49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488640== by 0x127BA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488640== by 0x127A48: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488640== by 0x1280DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488640== by 0x123365: main (TestDistributedVector.cpp:19) +==1488640== +==1488640== Open file descriptor 115: +==1488640== +==1488640== +==1488640== Open file descriptor 112: +==1488640== +==1488640== +==1488640== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedVector_valgrind.txt +==1488640== +==1488640== +==1488640== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488640== +==1488640== +==1488640== +==1488640== HEAP SUMMARY: +==1488640== in use at exit: 995,073 bytes in 13,913 blocks +==1488640== total heap usage: 58,776 allocs, 44,863 frees, 1,571,496,795 bytes allocated +==1488640== +==1488640== LEAK SUMMARY: +==1488640== definitely lost: 0 bytes in 0 blocks +==1488640== indirectly lost: 0 bytes in 0 blocks +==1488640== possibly lost: 0 bytes in 0 blocks +==1488640== still reachable: 24 bytes in 2 blocks +==1488640== suppressed: 995,049 bytes in 13,911 blocks +==1488640== Reachable blocks (those to which a pointer was found) are not shown. +==1488640== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488640== +==1488640== For lists of detected and suppressed errors, rerun with: -s +==1488640== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestDivisionBiasTrackingModifier_valgrind.txt b/log-files/2024-02-21_13-45-57/TestDivisionBiasTrackingModifier_valgrind.txt new file mode 100644 index 0000000000..76b7c8db1b --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestDivisionBiasTrackingModifier_valgrind.txt @@ -0,0 +1,73 @@ +==1490427== Memcheck, a memory error detector +==1490427== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490427== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490427== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDivisionBiasTrackingModifier -malloc_debug -malloc_dump -memory_info +==1490427== Parent PID: 1488630 +==1490427== +==1490427== +==1490427== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490427== Open file descriptor 12: +==1490427== at 0xEBAC07D: pipe (pipe.c:29) +==1490427== by 0x18A1D07D: ??? +==1490427== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490427== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490427== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490427== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490427== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490427== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490427== by 0x1FE694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490427== by 0x1F67DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490427== by 0x1F9F72: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490427== by 0x1F9E6D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490427== by 0x1FA481: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490427== by 0x1F4FD5: main (TestDivisionBiasTrackingModifier.cpp:18) +==1490427== +==1490427== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490427== at 0xEBB0A1C: __open_nocancel (open64_nocancel.c:39) +==1490427== by 0xEB34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490427== by 0xE49F822: ??? +==1490427== by 0xE49F96F: ??? +==1490427== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490427== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490427== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490427== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490427== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490427== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490427== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490427== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490427== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490427== by 0x1FE694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490427== by 0x1F67DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490427== by 0x1F9F72: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490427== by 0x1F9E6D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490427== by 0x1FA481: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490427== by 0x1F4FD5: main (TestDivisionBiasTrackingModifier.cpp:18) +==1490427== +==1490427== Open file descriptor 115: +==1490427== +==1490427== +==1490427== Open file descriptor 112: +==1490427== +==1490427== +==1490427== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDivisionBiasTrackingModifier_valgrind.txt +==1490427== +==1490427== +==1490427== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490427== +==1490427== +==1490427== +==1490427== HEAP SUMMARY: +==1490427== in use at exit: 995,526 bytes in 13,910 blocks +==1490427== total heap usage: 7,554,021 allocs, 7,540,111 frees, 2,961,068,282 bytes allocated +==1490427== +==1490427== LEAK SUMMARY: +==1490427== definitely lost: 0 bytes in 0 blocks +==1490427== indirectly lost: 0 bytes in 0 blocks +==1490427== possibly lost: 0 bytes in 0 blocks +==1490427== still reachable: 56 bytes in 3 blocks +==1490427== suppressed: 995,470 bytes in 13,907 blocks +==1490427== Reachable blocks (those to which a pointer was found) are not shown. +==1490427== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490427== +==1490427== For lists of detected and suppressed errors, rerun with: -s +==1490427== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestDynamicVentilation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestDynamicVentilation_valgrind.txt new file mode 100644 index 0000000000..9c461513f9 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestDynamicVentilation_valgrind.txt @@ -0,0 +1,73 @@ +==1504915== Memcheck, a memory error detector +==1504915== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504915== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504915== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestDynamicVentilation -malloc_debug -malloc_dump -memory_info +==1504915== Parent PID: 1488630 +==1504915== +==1504915== +==1504915== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504915== Open file descriptor 12: +==1504915== at 0x520007D: pipe (pipe.c:29) +==1504915== by 0x1041307D: ??? +==1504915== by 0xB6BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504915== by 0x677B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504915== by 0x6714D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504915== by 0x540BD38: PetscInitialize (pinit.c:924) +==1504915== by 0x4A18153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504915== by 0x4A181A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504915== by 0x11807E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504915== by 0x11378D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504915== by 0x1160AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504915== by 0x115F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504915== by 0x1165E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504915== by 0x111BB5: main (TestDynamicVentilation.cpp:19) +==1504915== +==1504915== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504915== at 0x5204A1C: __open_nocancel (open64_nocancel.c:39) +==1504915== by 0x5188BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504915== by 0x4A4C822: ??? +==1504915== by 0x4A4C96F: ??? +==1504915== by 0xB7636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504915== by 0xB763938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504915== by 0xB719922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504915== by 0xB6BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504915== by 0x677B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504915== by 0x6714D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504915== by 0x540BD38: PetscInitialize (pinit.c:924) +==1504915== by 0x4A18153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504915== by 0x4A181A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504915== by 0x11807E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504915== by 0x11378D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504915== by 0x1160AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504915== by 0x115F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504915== by 0x1165E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504915== by 0x111BB5: main (TestDynamicVentilation.cpp:19) +==1504915== +==1504915== Open file descriptor 115: +==1504915== +==1504915== +==1504915== Open file descriptor 112: +==1504915== +==1504915== +==1504915== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDynamicVentilation_valgrind.txt +==1504915== +==1504915== +==1504915== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504915== +==1504915== +==1504915== +==1504915== HEAP SUMMARY: +==1504915== in use at exit: 995,553 bytes in 13,913 blocks +==1504915== total heap usage: 86,597 allocs, 72,684 frees, 1,583,639,158 bytes allocated +==1504915== +==1504915== LEAK SUMMARY: +==1504915== definitely lost: 0 bytes in 0 blocks +==1504915== indirectly lost: 0 bytes in 0 blocks +==1504915== possibly lost: 0 bytes in 0 blocks +==1504915== still reachable: 24 bytes in 2 blocks +==1504915== suppressed: 995,529 bytes in 13,911 blocks +==1504915== Reachable blocks (those to which a pointer was found) are not shown. +==1504915== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504915== +==1504915== For lists of detected and suppressed errors, rerun with: -s +==1504915== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 40) diff --git a/log-files/2024-02-21_13-45-57/TestDynamicallyLoadedCellModels_valgrind.txt b/log-files/2024-02-21_13-45-57/TestDynamicallyLoadedCellModels_valgrind.txt new file mode 100644 index 0000000000..071a7162fe --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestDynamicallyLoadedCellModels_valgrind.txt @@ -0,0 +1,73 @@ +==1505315== Memcheck, a memory error detector +==1505315== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505315== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505315== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestDynamicallyLoadedCellModels -malloc_debug -malloc_dump -memory_info +==1505315== Parent PID: 1488630 +==1505315== +==1505315== +==1505315== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505315== Open file descriptor 12: +==1505315== at 0x882607D: pipe (pipe.c:29) +==1505315== by 0x13F9607D: ??? +==1505315== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505315== by 0x9F21418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505315== by 0x9EBAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505315== by 0x8BB1D38: PetscInitialize (pinit.c:924) +==1505315== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505315== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505315== by 0x123164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505315== by 0x11E28F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505315== by 0x120CE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505315== by 0x120B88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505315== by 0x12121F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505315== by 0x119055: main (TestDynamicallyLoadedCellModels.cpp:19) +==1505315== +==1505315== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505315== at 0x882AA1C: __open_nocancel (open64_nocancel.c:39) +==1505315== by 0x87AEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505315== by 0x8486822: ??? +==1505315== by 0x848696F: ??? +==1505315== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505315== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505315== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505315== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505315== by 0x9F21418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505315== by 0x9EBAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505315== by 0x8BB1D38: PetscInitialize (pinit.c:924) +==1505315== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505315== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505315== by 0x123164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505315== by 0x11E28F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505315== by 0x120CE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505315== by 0x120B88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505315== by 0x12121F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505315== by 0x119055: main (TestDynamicallyLoadedCellModels.cpp:19) +==1505315== +==1505315== Open file descriptor 115: +==1505315== +==1505315== +==1505315== Open file descriptor 112: +==1505315== +==1505315== +==1505315== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDynamicallyLoadedCellModels_valgrind.txt +==1505315== +==1505315== +==1505315== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505315== +==1505315== +==1505315== +==1505315== HEAP SUMMARY: +==1505315== in use at exit: 1,009,939 bytes in 13,940 blocks +==1505315== total heap usage: 971,637 allocs, 957,697 frees, 2,147,401,426 bytes allocated +==1505315== +==1505315== LEAK SUMMARY: +==1505315== definitely lost: 0 bytes in 0 blocks +==1505315== indirectly lost: 0 bytes in 0 blocks +==1505315== possibly lost: 0 bytes in 0 blocks +==1505315== still reachable: 14,453 bytes in 33 blocks +==1505315== suppressed: 995,486 bytes in 13,907 blocks +==1505315== Reachable blocks (those to which a pointer was found) are not shown. +==1505315== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505315== +==1505315== For lists of detected and suppressed errors, rerun with: -s +==1505315== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestEdgeInteriorSrn_valgrind.txt b/log-files/2024-02-21_13-45-57/TestEdgeInteriorSrn_valgrind.txt new file mode 100644 index 0000000000..aac4dda0ff --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestEdgeInteriorSrn_valgrind.txt @@ -0,0 +1,73 @@ +==1489878== Memcheck, a memory error detector +==1489878== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489878== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489878== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEdgeInteriorSrn -malloc_debug -malloc_dump -memory_info +==1489878== Parent PID: 1488630 +==1489878== +==1489878== +==1489878== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489878== Open file descriptor 12: +==1489878== at 0xEBAC07D: pipe (pipe.c:29) +==1489878== by 0x18A1D07D: ??? +==1489878== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489878== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489878== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489878== by 0xF499D38: PetscInitialize (pinit.c:924) +==1489878== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489878== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489878== by 0x130B3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489878== by 0x12B59D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489878== by 0x12E2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489878== by 0x12E14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489878== by 0x12E7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489878== by 0x1299C5: main (TestEdgeInteriorSrn.cpp:19) +==1489878== +==1489878== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489878== at 0xEBB0A1C: __open_nocancel (open64_nocancel.c:39) +==1489878== by 0xEB34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489878== by 0xE49F822: ??? +==1489878== by 0xE49F96F: ??? +==1489878== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489878== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489878== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489878== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489878== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489878== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489878== by 0xF499D38: PetscInitialize (pinit.c:924) +==1489878== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489878== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489878== by 0x130B3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489878== by 0x12B59D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489878== by 0x12E2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489878== by 0x12E14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489878== by 0x12E7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489878== by 0x1299C5: main (TestEdgeInteriorSrn.cpp:19) +==1489878== +==1489878== Open file descriptor 115: +==1489878== +==1489878== +==1489878== Open file descriptor 112: +==1489878== +==1489878== +==1489878== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEdgeInteriorSrn_valgrind.txt +==1489878== +==1489878== +==1489878== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489878== +==1489878== +==1489878== +==1489878== HEAP SUMMARY: +==1489878== in use at exit: 995,601 bytes in 13,915 blocks +==1489878== total heap usage: 102,194 allocs, 88,279 frees, 1,575,371,272 bytes allocated +==1489878== +==1489878== LEAK SUMMARY: +==1489878== definitely lost: 0 bytes in 0 blocks +==1489878== indirectly lost: 0 bytes in 0 blocks +==1489878== possibly lost: 0 bytes in 0 blocks +==1489878== still reachable: 72 bytes in 4 blocks +==1489878== suppressed: 995,529 bytes in 13,911 blocks +==1489878== Reachable blocks (those to which a pointer was found) are not shown. +==1489878== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489878== +==1489878== For lists of detected and suppressed errors, rerun with: -s +==1489878== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestEdge_valgrind.txt b/log-files/2024-02-21_13-45-57/TestEdge_valgrind.txt new file mode 100644 index 0000000000..81689a1d41 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestEdge_valgrind.txt @@ -0,0 +1,73 @@ +==1489111== Memcheck, a memory error detector +==1489111== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489111== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489111== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestEdge -malloc_debug -malloc_dump -memory_info +==1489111== Parent PID: 1488630 +==1489111== +==1489111== +==1489111== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489111== Open file descriptor 12: +==1489111== at 0x7DBB07D: pipe (pipe.c:29) +==1489111== by 0xFD3507D: ??? +==1489111== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489111== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489111== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489111== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489111== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489111== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489111== by 0x15EC55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489111== by 0x15930F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489111== by 0x15C29A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489111== by 0x15C196: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489111== by 0x15C7A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489111== by 0x157B05: main (TestEdge.cpp:18) +==1489111== +==1489111== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489111== at 0x7DBFA1C: __open_nocancel (open64_nocancel.c:39) +==1489111== by 0x7D43BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489111== by 0x61F7822: ??? +==1489111== by 0x61F796F: ??? +==1489111== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489111== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489111== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489111== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489111== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489111== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489111== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489111== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489111== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489111== by 0x15EC55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489111== by 0x15930F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489111== by 0x15C29A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489111== by 0x15C196: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489111== by 0x15C7A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489111== by 0x157B05: main (TestEdge.cpp:18) +==1489111== +==1489111== Open file descriptor 115: +==1489111== +==1489111== +==1489111== Open file descriptor 112: +==1489111== +==1489111== +==1489111== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEdge_valgrind.txt +==1489111== +==1489111== +==1489111== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489111== +==1489111== +==1489111== +==1489111== HEAP SUMMARY: +==1489111== in use at exit: 995,457 bytes in 13,913 blocks +==1489111== total heap usage: 60,509 allocs, 46,596 frees, 1,571,521,582 bytes allocated +==1489111== +==1489111== LEAK SUMMARY: +==1489111== definitely lost: 0 bytes in 0 blocks +==1489111== indirectly lost: 0 bytes in 0 blocks +==1489111== possibly lost: 0 bytes in 0 blocks +==1489111== still reachable: 24 bytes in 2 blocks +==1489111== suppressed: 995,433 bytes in 13,911 blocks +==1489111== Reachable blocks (those to which a pointer was found) are not shown. +==1489111== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489111== +==1489111== For lists of detected and suppressed errors, rerun with: -s +==1489111== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestElectroMechanicsExactSolution_valgrind.txt b/log-files/2024-02-21_13-45-57/TestElectroMechanicsExactSolution_valgrind.txt new file mode 100644 index 0000000000..7d999df8ec --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestElectroMechanicsExactSolution_valgrind.txt @@ -0,0 +1,73 @@ +==1506438== Memcheck, a memory error detector +==1506438== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506438== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506438== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectroMechanicsExactSolution -malloc_debug -malloc_dump -memory_info +==1506438== Parent PID: 1488630 +==1506438== +==1506438== +==1506438== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506438== Open file descriptor 12: +==1506438== at 0xA76107D: pipe (pipe.c:29) +==1506438== by 0x13F9607D: ??? +==1506438== by 0xD1D14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506438== by 0x9F68418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506438== by 0x9F01D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506438== by 0xA96AD38: PetscInitialize (pinit.c:924) +==1506438== by 0x9E28153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506438== by 0x9E281A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506438== by 0x12D4D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506438== by 0x12824F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506438== by 0x12ADF6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506438== by 0x12ACF1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506438== by 0x12B305: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506438== by 0x126095: main (TestElectroMechanicsExactSolution.cpp:18) +==1506438== +==1506438== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506438== at 0xA765A1C: __open_nocancel (open64_nocancel.c:39) +==1506438== by 0xA6E9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506438== by 0x9E5C822: ??? +==1506438== by 0x9E5C96F: ??? +==1506438== by 0xD2766DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506438== by 0xD276938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506438== by 0xD22C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506438== by 0xD1D12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506438== by 0x9F68418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506438== by 0x9F01D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506438== by 0xA96AD38: PetscInitialize (pinit.c:924) +==1506438== by 0x9E28153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506438== by 0x9E281A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506438== by 0x12D4D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506438== by 0x12824F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506438== by 0x12ADF6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506438== by 0x12ACF1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506438== by 0x12B305: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506438== by 0x126095: main (TestElectroMechanicsExactSolution.cpp:18) +==1506438== +==1506438== Open file descriptor 115: +==1506438== +==1506438== +==1506438== Open file descriptor 112: +==1506438== +==1506438== +==1506438== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectroMechanicsExactSolution_valgrind.txt +==1506438== +==1506438== +==1506438== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506438== +==1506438== +==1506438== +==1506438== HEAP SUMMARY: +==1506438== in use at exit: 995,990 bytes in 13,919 blocks +==1506438== total heap usage: 1,270,193 allocs, 1,256,274 frees, 1,722,111,813 bytes allocated +==1506438== +==1506438== LEAK SUMMARY: +==1506438== definitely lost: 0 bytes in 0 blocks +==1506438== indirectly lost: 0 bytes in 0 blocks +==1506438== possibly lost: 0 bytes in 0 blocks +==1506438== still reachable: 24 bytes in 2 blocks +==1506438== suppressed: 995,966 bytes in 13,917 blocks +==1506438== Reachable blocks (those to which a pointer was found) are not shown. +==1506438== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506438== +==1506438== For lists of detected and suppressed errors, rerun with: -s +==1506438== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 38 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestElectroMechanicsProblemDefinition_valgrind.txt b/log-files/2024-02-21_13-45-57/TestElectroMechanicsProblemDefinition_valgrind.txt new file mode 100644 index 0000000000..c95900b6a7 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestElectroMechanicsProblemDefinition_valgrind.txt @@ -0,0 +1,36 @@ +==1506398== Memcheck, a memory error detector +==1506398== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506398== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506398== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectroMechanicsProblemDefinition -malloc_debug -malloc_dump -memory_info +==1506398== Parent PID: 1488630 +==1506398== +==1506398== +==1506398== FILE DESCRIPTORS: 7 open (3 std) at exit. +==1506398== Open file descriptor 115: +==1506398== +==1506398== +==1506398== Open file descriptor 112: +==1506398== +==1506398== +==1506398== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectroMechanicsProblemDefinition_valgrind.txt +==1506398== +==1506398== +==1506398== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506398== +==1506398== +==1506398== +==1506398== HEAP SUMMARY: +==1506398== in use at exit: 24 bytes in 2 blocks +==1506398== total heap usage: 13,751 allocs, 13,749 frees, 1,506,583 bytes allocated +==1506398== +==1506398== LEAK SUMMARY: +==1506398== definitely lost: 0 bytes in 0 blocks +==1506398== indirectly lost: 0 bytes in 0 blocks +==1506398== possibly lost: 0 bytes in 0 blocks +==1506398== still reachable: 24 bytes in 2 blocks +==1506398== suppressed: 0 bytes in 0 blocks +==1506398== Reachable blocks (those to which a pointer was found) are not shown. +==1506398== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506398== +==1506398== For lists of detected and suppressed errors, rerun with: -s +==1506398== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-02-21_13-45-57/TestElectrodes_valgrind.txt b/log-files/2024-02-21_13-45-57/TestElectrodes_valgrind.txt new file mode 100644 index 0000000000..de74dff007 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestElectrodes_valgrind.txt @@ -0,0 +1,73 @@ +==1506972== Memcheck, a memory error detector +==1506972== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506972== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506972== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectrodes -malloc_debug -malloc_dump -memory_info +==1506972== Parent PID: 1488630 +==1506972== +==1506972== +==1506972== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506972== Open file descriptor 12: +==1506972== at 0xB9D207D: pipe (pipe.c:29) +==1506972== by 0x13F9607D: ??? +==1506972== by 0xF7514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506972== by 0xB2C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506972== by 0xB259D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506972== by 0x9F2AD38: PetscInitialize (pinit.c:924) +==1506972== by 0x9E02153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506972== by 0x9E021A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506972== by 0x11B15C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506972== by 0x1167ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506972== by 0x118FC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506972== by 0x118E66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506972== by 0x1194FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506972== by 0x114C15: main (TestElectrodes.cpp:19) +==1506972== +==1506972== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506972== at 0xB9D6A1C: __open_nocancel (open64_nocancel.c:39) +==1506972== by 0xB95ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506972== by 0xB1B4822: ??? +==1506972== by 0xB1B496F: ??? +==1506972== by 0xF7F66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506972== by 0xF7F6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506972== by 0xF7AC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506972== by 0xF7512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506972== by 0xB2C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506972== by 0xB259D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506972== by 0x9F2AD38: PetscInitialize (pinit.c:924) +==1506972== by 0x9E02153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506972== by 0x9E021A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506972== by 0x11B15C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506972== by 0x1167ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506972== by 0x118FC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506972== by 0x118E66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506972== by 0x1194FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506972== by 0x114C15: main (TestElectrodes.cpp:19) +==1506972== +==1506972== Open file descriptor 115: +==1506972== +==1506972== +==1506972== Open file descriptor 112: +==1506972== +==1506972== +==1506972== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectrodes_valgrind.txt +==1506972== +==1506972== +==1506972== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506972== +==1506972== +==1506972== +==1506972== HEAP SUMMARY: +==1506972== in use at exit: 995,569 bytes in 13,913 blocks +==1506972== total heap usage: 277,439 allocs, 263,526 frees, 1,597,422,702 bytes allocated +==1506972== +==1506972== LEAK SUMMARY: +==1506972== definitely lost: 0 bytes in 0 blocks +==1506972== indirectly lost: 0 bytes in 0 blocks +==1506972== possibly lost: 0 bytes in 0 blocks +==1506972== still reachable: 24 bytes in 2 blocks +==1506972== suppressed: 995,545 bytes in 13,911 blocks +==1506972== Reachable blocks (those to which a pointer was found) are not shown. +==1506972== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506972== +==1506972== For lists of detected and suppressed errors, rerun with: -s +==1506972== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestElementAttributes_valgrind.txt b/log-files/2024-02-21_13-45-57/TestElementAttributes_valgrind.txt new file mode 100644 index 0000000000..928820ff45 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestElementAttributes_valgrind.txt @@ -0,0 +1,73 @@ +==1489012== Memcheck, a memory error detector +==1489012== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489012== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489012== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestElementAttributes -malloc_debug -malloc_dump -memory_info +==1489012== Parent PID: 1488630 +==1489012== +==1489012== +==1489012== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489012== Open file descriptor 12: +==1489012== at 0x65C107D: pipe (pipe.c:29) +==1489012== by 0xFD3207D: ??? +==1489012== by 0xB6794CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489012== by 0x7BCB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489012== by 0x7B64D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489012== by 0x6859D38: PetscInitialize (pinit.c:924) +==1489012== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489012== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489012== by 0x12CF3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489012== by 0x127D29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489012== by 0x12A996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489012== by 0x12A836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489012== by 0x12AECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489012== by 0x126145: main (TestElementAttributes.cpp:19) +==1489012== +==1489012== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489012== at 0x65C5A1C: __open_nocancel (open64_nocancel.c:39) +==1489012== by 0x6549BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489012== by 0x61F7822: ??? +==1489012== by 0x61F796F: ??? +==1489012== by 0xB71E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489012== by 0xB71E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489012== by 0xB6D4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489012== by 0xB6792DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489012== by 0x7BCB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489012== by 0x7B64D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489012== by 0x6859D38: PetscInitialize (pinit.c:924) +==1489012== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489012== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489012== by 0x12CF3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489012== by 0x127D29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489012== by 0x12A996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489012== by 0x12A836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489012== by 0x12AECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489012== by 0x126145: main (TestElementAttributes.cpp:19) +==1489012== +==1489012== Open file descriptor 115: +==1489012== +==1489012== +==1489012== Open file descriptor 112: +==1489012== +==1489012== +==1489012== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElementAttributes_valgrind.txt +==1489012== +==1489012== +==1489012== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489012== +==1489012== +==1489012== +==1489012== HEAP SUMMARY: +==1489012== in use at exit: 995,457 bytes in 13,913 blocks +==1489012== total heap usage: 59,973 allocs, 46,060 frees, 1,571,507,252 bytes allocated +==1489012== +==1489012== LEAK SUMMARY: +==1489012== definitely lost: 0 bytes in 0 blocks +==1489012== indirectly lost: 0 bytes in 0 blocks +==1489012== possibly lost: 0 bytes in 0 blocks +==1489012== still reachable: 24 bytes in 2 blocks +==1489012== suppressed: 995,433 bytes in 13,911 blocks +==1489012== Reachable blocks (those to which a pointer was found) are not shown. +==1489012== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489012== +==1489012== For lists of detected and suppressed errors, rerun with: -s +==1489012== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestElement_valgrind.txt b/log-files/2024-02-21_13-45-57/TestElement_valgrind.txt new file mode 100644 index 0000000000..528147e7d9 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestElement_valgrind.txt @@ -0,0 +1,73 @@ +==1489011== Memcheck, a memory error detector +==1489011== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489011== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489011== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestElement -malloc_debug -malloc_dump -memory_info +==1489011== Parent PID: 1488630 +==1489011== +==1489011== +==1489011== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489011== Open file descriptor 12: +==1489011== at 0x69AB07D: pipe (pipe.c:29) +==1489011== by 0xFD3507D: ??? +==1489011== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489011== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489011== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489011== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489011== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489011== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489011== by 0x12B5A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489011== by 0x12642D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489011== by 0x12932C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489011== by 0x1291CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489011== by 0x129863: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489011== by 0x124855: main (TestElement.cpp:19) +==1489011== +==1489011== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489011== at 0x69AFA1C: __open_nocancel (open64_nocancel.c:39) +==1489011== by 0x6933BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489011== by 0x61F7822: ??? +==1489011== by 0x61F796F: ??? +==1489011== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489011== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489011== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489011== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489011== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489011== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489011== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489011== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489011== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489011== by 0x12B5A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489011== by 0x12642D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489011== by 0x12932C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489011== by 0x1291CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489011== by 0x129863: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489011== by 0x124855: main (TestElement.cpp:19) +==1489011== +==1489011== Open file descriptor 115: +==1489011== +==1489011== +==1489011== Open file descriptor 112: +==1489011== +==1489011== +==1489011== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElement_valgrind.txt +==1489011== +==1489011== +==1489011== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489011== +==1489011== +==1489011== +==1489011== HEAP SUMMARY: +==1489011== in use at exit: 995,457 bytes in 13,913 blocks +==1489011== total heap usage: 78,353 allocs, 64,440 frees, 1,573,573,852 bytes allocated +==1489011== +==1489011== LEAK SUMMARY: +==1489011== definitely lost: 0 bytes in 0 blocks +==1489011== indirectly lost: 0 bytes in 0 blocks +==1489011== possibly lost: 0 bytes in 0 blocks +==1489011== still reachable: 24 bytes in 2 blocks +==1489011== suppressed: 995,433 bytes in 13,911 blocks +==1489011== Reachable blocks (those to which a pointer was found) are not shown. +==1489011== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489011== +==1489011== For lists of detected and suppressed errors, rerun with: -s +==1489011== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-02-21_13-45-57/TestEllipticBoxDomainPdeModifier_valgrind.txt b/log-files/2024-02-21_13-45-57/TestEllipticBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 0000000000..0c7a5105ad --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestEllipticBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==1489903== Memcheck, a memory error detector +==1489903== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489903== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489903== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEllipticBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==1489903== Parent PID: 1488630 +==1489903== +==1489903== +==1489903== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489903== Open file descriptor 12: +==1489903== at 0x1040007D: pipe (pipe.c:29) +==1489903== by 0x18A1D07D: ??? +==1489903== by 0x13F8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489903== by 0xFD08418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489903== by 0xFCA1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489903== by 0xE998D38: PetscInitialize (pinit.c:924) +==1489903== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489903== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489903== by 0x13AB97: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489903== by 0x135563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489903== by 0x138174: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489903== by 0x13806F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489903== by 0x138683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489903== by 0x133D65: main (TestEllipticBoxDomainPdeModifier.cpp:18) +==1489903== +==1489903== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489903== at 0x10404A1C: __open_nocancel (open64_nocancel.c:39) +==1489903== by 0x10388BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489903== by 0xE83C822: ??? +==1489903== by 0xE83C96F: ??? +==1489903== by 0x140306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489903== by 0x14030938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489903== by 0x13FE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489903== by 0x13F8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489903== by 0xFD08418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489903== by 0xFCA1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489903== by 0xE998D38: PetscInitialize (pinit.c:924) +==1489903== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489903== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489903== by 0x13AB97: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489903== by 0x135563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489903== by 0x138174: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489903== by 0x13806F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489903== by 0x138683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489903== by 0x133D65: main (TestEllipticBoxDomainPdeModifier.cpp:18) +==1489903== +==1489903== Open file descriptor 115: +==1489903== +==1489903== +==1489903== Open file descriptor 112: +==1489903== +==1489903== +==1489903== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEllipticBoxDomainPdeModifier_valgrind.txt +==1489903== +==1489903== +==1489903== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489903== +==1489903== +==1489903== +==1489903== HEAP SUMMARY: +==1489903== in use at exit: 995,526 bytes in 13,910 blocks +==1489903== total heap usage: 4,562,174 allocs, 4,548,264 frees, 2,138,159,174 bytes allocated +==1489903== +==1489903== LEAK SUMMARY: +==1489903== definitely lost: 0 bytes in 0 blocks +==1489903== indirectly lost: 0 bytes in 0 blocks +==1489903== possibly lost: 0 bytes in 0 blocks +==1489903== still reachable: 56 bytes in 3 blocks +==1489903== suppressed: 995,470 bytes in 13,907 blocks +==1489903== Reachable blocks (those to which a pointer was found) are not shown. +==1489903== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489903== +==1489903== For lists of detected and suppressed errors, rerun with: -s +==1489903== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestEllipticGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-02-21_13-45-57/TestEllipticGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 0000000000..28c3b4430f --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestEllipticGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==1489904== Memcheck, a memory error detector +==1489904== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489904== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489904== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEllipticGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==1489904== Parent PID: 1488630 +==1489904== +==1489904== +==1489904== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489904== Open file descriptor 12: +==1489904== at 0x104E707D: pipe (pipe.c:29) +==1489904== by 0x18A1D07D: ??? +==1489904== by 0x13F8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489904== by 0xFD08418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489904== by 0xFCA1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489904== by 0xE998D38: PetscInitialize (pinit.c:924) +==1489904== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489904== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489904== by 0x13FC51: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489904== by 0x139D3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489904== by 0x13CDD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489904== by 0x13CC74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489904== by 0x13D30B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489904== by 0x138165: main (TestEllipticGrowingDomainPdeModifier.cpp:19) +==1489904== +==1489904== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489904== at 0x104EBA1C: __open_nocancel (open64_nocancel.c:39) +==1489904== by 0x1046FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489904== by 0xE83C822: ??? +==1489904== by 0xE83C96F: ??? +==1489904== by 0x140306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489904== by 0x14030938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489904== by 0x13FE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489904== by 0x13F8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489904== by 0xFD08418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489904== by 0xFCA1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489904== by 0xE998D38: PetscInitialize (pinit.c:924) +==1489904== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489904== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489904== by 0x13FC51: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489904== by 0x139D3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489904== by 0x13CDD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489904== by 0x13CC74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489904== by 0x13D30B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489904== by 0x138165: main (TestEllipticGrowingDomainPdeModifier.cpp:19) +==1489904== +==1489904== Open file descriptor 115: +==1489904== +==1489904== +==1489904== Open file descriptor 112: +==1489904== +==1489904== +==1489904== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEllipticGrowingDomainPdeModifier_valgrind.txt +==1489904== +==1489904== +==1489904== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489904== +==1489904== +==1489904== +==1489904== HEAP SUMMARY: +==1489904== in use at exit: 995,585 bytes in 13,914 blocks +==1489904== total heap usage: 1,622,310 allocs, 1,608,396 frees, 1,671,364,616 bytes allocated +==1489904== +==1489904== LEAK SUMMARY: +==1489904== definitely lost: 0 bytes in 0 blocks +==1489904== indirectly lost: 0 bytes in 0 blocks +==1489904== possibly lost: 0 bytes in 0 blocks +==1489904== still reachable: 56 bytes in 3 blocks +==1489904== suppressed: 995,529 bytes in 13,911 blocks +==1489904== Reachable blocks (those to which a pointer was found) are not shown. +==1489904== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489904== +==1489904== For lists of detected and suppressed errors, rerun with: -s +==1489904== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestException_valgrind.txt b/log-files/2024-02-21_13-45-57/TestException_valgrind.txt new file mode 100644 index 0000000000..7477cbcdf2 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestException_valgrind.txt @@ -0,0 +1,73 @@ +==1488702== Memcheck, a memory error detector +==1488702== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488702== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488702== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestException -malloc_debug -malloc_dump -memory_info +==1488702== Parent PID: 1488630 +==1488702== +==1488702== +==1488702== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488702== Open file descriptor 12: +==1488702== at 0x4CB407D: pipe (pipe.c:29) +==1488702== by 0xAEA607D: ??? +==1488702== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488702== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488702== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488702== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488702== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488702== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488702== by 0x114E36: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488702== by 0x1105AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488702== by 0x112ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488702== by 0x112D78: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488702== by 0x11340F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488702== by 0x10E9D5: main (TestException.cpp:19) +==1488702== +==1488702== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488702== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==1488702== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488702== by 0x492E822: ??? +==1488702== by 0x492E96F: ??? +==1488702== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488702== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488702== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488702== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488702== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488702== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488702== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488702== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488702== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488702== by 0x114E36: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488702== by 0x1105AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488702== by 0x112ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488702== by 0x112D78: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488702== by 0x11340F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488702== by 0x10E9D5: main (TestException.cpp:19) +==1488702== +==1488702== Open file descriptor 115: +==1488702== +==1488702== +==1488702== Open file descriptor 112: +==1488702== +==1488702== +==1488702== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestException_valgrind.txt +==1488702== +==1488702== +==1488702== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488702== +==1488702== +==1488702== +==1488702== HEAP SUMMARY: +==1488702== in use at exit: 995,073 bytes in 13,913 blocks +==1488702== total heap usage: 57,843 allocs, 43,930 frees, 1,571,265,780 bytes allocated +==1488702== +==1488702== LEAK SUMMARY: +==1488702== definitely lost: 0 bytes in 0 blocks +==1488702== indirectly lost: 0 bytes in 0 blocks +==1488702== possibly lost: 0 bytes in 0 blocks +==1488702== still reachable: 24 bytes in 2 blocks +==1488702== suppressed: 995,049 bytes in 13,911 blocks +==1488702== Reachable blocks (those to which a pointer was found) are not shown. +==1488702== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488702== +==1488702== For lists of detected and suppressed errors, rerun with: -s +==1488702== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestExecutableSupport_valgrind.txt b/log-files/2024-02-21_13-45-57/TestExecutableSupport_valgrind.txt new file mode 100644 index 0000000000..3238ac1c70 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestExecutableSupport_valgrind.txt @@ -0,0 +1,79 @@ +==1488704== Memcheck, a memory error detector +==1488704== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488704== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488704== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestExecutableSupport -malloc_debug -malloc_dump -memory_info +==1488704== Parent PID: 1488630 +==1488704== +==1488704== +==1488704== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488704== Open file descriptor 12: +==1488704== at 0x4CB407D: pipe (pipe.c:29) +==1488704== by 0xAEA607D: ??? +==1488704== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488704== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488704== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488704== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488704== by 0x48D62EC: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) +==1488704== by 0x48D7E80: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:455) +==1488704== by 0x1120FD: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) +==1488704== by 0x1124BC: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) +==1488704== by 0x10D6CA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==1488704== by 0x1103DA: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==1488704== by 0x1102BF: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==1488704== by 0x110165: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==1488704== by 0x110027: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488704== by 0x11063B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488704== by 0x10C695: main (TestExecutableSupport.cpp:18) +==1488704== +==1488704== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488704== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==1488704== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488704== by 0x492E822: ??? +==1488704== by 0x492E96F: ??? +==1488704== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488704== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488704== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488704== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488704== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488704== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488704== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488704== by 0x48D62EC: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) +==1488704== by 0x48D7E80: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:455) +==1488704== by 0x1120FD: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) +==1488704== by 0x1124BC: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) +==1488704== by 0x10D6CA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==1488704== by 0x1103DA: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==1488704== by 0x1102BF: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==1488704== by 0x110165: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==1488704== by 0x110027: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488704== by 0x11063B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488704== by 0x10C695: main (TestExecutableSupport.cpp:18) +==1488704== +==1488704== Open file descriptor 115: +==1488704== +==1488704== +==1488704== Open file descriptor 112: +==1488704== +==1488704== +==1488704== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExecutableSupport_valgrind.txt +==1488704== +==1488704== +==1488704== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488704== +==1488704== +==1488704== +==1488704== HEAP SUMMARY: +==1488704== in use at exit: 995,073 bytes in 13,913 blocks +==1488704== total heap usage: 57,869 allocs, 43,956 frees, 1,571,335,187 bytes allocated +==1488704== +==1488704== LEAK SUMMARY: +==1488704== definitely lost: 0 bytes in 0 blocks +==1488704== indirectly lost: 0 bytes in 0 blocks +==1488704== possibly lost: 0 bytes in 0 blocks +==1488704== still reachable: 24 bytes in 2 blocks +==1488704== suppressed: 995,049 bytes in 13,911 blocks +==1488704== Reachable blocks (those to which a pointer was found) are not shown. +==1488704== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488704== +==1488704== For lists of detected and suppressed errors, rerun with: -s +==1488704== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestExplicitCardiacMechanicsSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestExplicitCardiacMechanicsSolver_valgrind.txt new file mode 100644 index 0000000000..2649befbc7 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestExplicitCardiacMechanicsSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1506610== Memcheck, a memory error detector +==1506610== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506610== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506610== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExplicitCardiacMechanicsSolver -malloc_debug -malloc_dump -memory_info +==1506610== Parent PID: 1488630 +==1506610== +==1506610== +==1506610== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506610== Open file descriptor 12: +==1506610== at 0xA78407D: pipe (pipe.c:29) +==1506610== by 0x13F9807D: ??? +==1506610== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506610== by 0xBCFD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506610== by 0xBC96D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506610== by 0xA98DD38: PetscInitialize (pinit.c:924) +==1506610== by 0x9F82153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506610== by 0x9F821A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506610== by 0x12399A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506610== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506610== by 0x1218A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506610== by 0x121746: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506610== by 0x121DDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506610== by 0x11D175: main (TestExplicitCardiacMechanicsSolver.cpp:19) +==1506610== +==1506610== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506610== at 0xA788A1C: __open_nocancel (open64_nocancel.c:39) +==1506610== by 0xA70CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506610== by 0x9FB6822: ??? +==1506610== by 0x9FB696F: ??? +==1506610== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506610== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506610== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506610== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506610== by 0xBCFD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506610== by 0xBC96D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506610== by 0xA98DD38: PetscInitialize (pinit.c:924) +==1506610== by 0x9F82153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506610== by 0x9F821A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506610== by 0x12399A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506610== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506610== by 0x1218A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506610== by 0x121746: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506610== by 0x121DDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506610== by 0x11D175: main (TestExplicitCardiacMechanicsSolver.cpp:19) +==1506610== +==1506610== Open file descriptor 115: +==1506610== +==1506610== +==1506610== Open file descriptor 112: +==1506610== +==1506610== +==1506610== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExplicitCardiacMechanicsSolver_valgrind.txt +==1506610== +==1506610== +==1506610== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506610== +==1506610== +==1506610== +==1506610== HEAP SUMMARY: +==1506610== in use at exit: 995,510 bytes in 13,909 blocks +==1506610== total heap usage: 1,600,593 allocs, 1,586,684 frees, 1,769,905,019 bytes allocated +==1506610== +==1506610== LEAK SUMMARY: +==1506610== definitely lost: 0 bytes in 0 blocks +==1506610== indirectly lost: 0 bytes in 0 blocks +==1506610== possibly lost: 0 bytes in 0 blocks +==1506610== still reachable: 24 bytes in 2 blocks +==1506610== suppressed: 995,486 bytes in 13,907 blocks +==1506610== Reachable blocks (those to which a pointer was found) are not shown. +==1506610== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506610== +==1506610== For lists of detected and suppressed errors, rerun with: -s +==1506610== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2024-02-21_13-45-57/TestExtendedBidomainProblem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestExtendedBidomainProblem_valgrind.txt new file mode 100644 index 0000000000..ea6bc35f7e --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestExtendedBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==1505069== Memcheck, a memory error detector +==1505069== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505069== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505069== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainProblem -malloc_debug -malloc_dump -memory_info +==1505069== Parent PID: 1488630 +==1505069== +==1505069== +==1505069== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505069== Open file descriptor 12: +==1505069== at 0xA5FC07D: pipe (pipe.c:29) +==1505069== by 0x13F9607D: ??? +==1505069== by 0xD5864CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505069== by 0x9EEA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505069== by 0x9E83D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505069== by 0xA987D38: PetscInitialize (pinit.c:924) +==1505069== by 0x9DAA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505069== by 0x9DAA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505069== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505069== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505069== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505069== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505069== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505069== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) +==1505069== +==1505069== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505069== at 0xA600A1C: __open_nocancel (open64_nocancel.c:39) +==1505069== by 0xA584BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505069== by 0x9DDE822: ??? +==1505069== by 0x9DDE96F: ??? +==1505069== by 0xD62B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505069== by 0xD62B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505069== by 0xD5E1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505069== by 0xD5862DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505069== by 0x9EEA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505069== by 0x9E83D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505069== by 0xA987D38: PetscInitialize (pinit.c:924) +==1505069== by 0x9DAA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505069== by 0x9DAA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505069== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505069== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505069== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505069== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505069== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505069== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) +==1505069== +==1505069== Open file descriptor 115: +==1505069== +==1505069== +==1505069== Open file descriptor 112: +==1505069== +==1505069== +==1505069== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainProblem_valgrind.txt +==1505069== +==1505069== +==1505069== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505069== +==1505069== +==1505069== +==1505069== HEAP SUMMARY: +==1505069== in use at exit: 995,990 bytes in 13,919 blocks +==1505069== total heap usage: 2,385,793 allocs, 2,371,874 frees, 2,701,497,938 bytes allocated +==1505069== +==1505069== LEAK SUMMARY: +==1505069== definitely lost: 0 bytes in 0 blocks +==1505069== indirectly lost: 0 bytes in 0 blocks +==1505069== possibly lost: 0 bytes in 0 blocks +==1505069== still reachable: 24 bytes in 2 blocks +==1505069== suppressed: 995,966 bytes in 13,917 blocks +==1505069== Reachable blocks (those to which a pointer was found) are not shown. +==1505069== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505069== +==1505069== For lists of detected and suppressed errors, rerun with: -s +==1505069== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestExtendedBidomainTissue_valgrind.txt b/log-files/2024-02-21_13-45-57/TestExtendedBidomainTissue_valgrind.txt new file mode 100644 index 0000000000..8fd7432129 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestExtendedBidomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==1505052== Memcheck, a memory error detector +==1505052== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505052== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505052== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainTissue -malloc_debug -malloc_dump -memory_info +==1505052== Parent PID: 1488630 +==1505052== +==1505052== +==1505052== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505052== Open file descriptor 12: +==1505052== at 0xB81207D: pipe (pipe.c:29) +==1505052== by 0x13F9607D: ??? +==1505052== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505052== by 0xBB8F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505052== by 0xBB28D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505052== by 0x9EC7D38: PetscInitialize (pinit.c:924) +==1505052== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505052== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505052== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505052== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505052== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505052== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505052== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505052== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) +==1505052== +==1505052== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505052== at 0xB816A1C: __open_nocancel (open64_nocancel.c:39) +==1505052== by 0xB79ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505052== by 0x9D6B822: ??? +==1505052== by 0x9D6B96F: ??? +==1505052== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505052== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505052== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505052== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505052== by 0xBB8F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505052== by 0xBB28D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505052== by 0x9EC7D38: PetscInitialize (pinit.c:924) +==1505052== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505052== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505052== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505052== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505052== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505052== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505052== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505052== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) +==1505052== +==1505052== Open file descriptor 115: +==1505052== +==1505052== +==1505052== Open file descriptor 112: +==1505052== +==1505052== +==1505052== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainTissue_valgrind.txt +==1505052== +==1505052== +==1505052== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505052== +==1505052== +==1505052== +==1505052== HEAP SUMMARY: +==1505052== in use at exit: 995,569 bytes in 13,913 blocks +==1505052== total heap usage: 133,428 allocs, 119,515 frees, 1,587,454,769 bytes allocated +==1505052== +==1505052== LEAK SUMMARY: +==1505052== definitely lost: 0 bytes in 0 blocks +==1505052== indirectly lost: 0 bytes in 0 blocks +==1505052== possibly lost: 0 bytes in 0 blocks +==1505052== still reachable: 24 bytes in 2 blocks +==1505052== suppressed: 995,545 bytes in 13,911 blocks +==1505052== Reachable blocks (those to which a pointer was found) are not shown. +==1505052== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505052== +==1505052== For lists of detected and suppressed errors, rerun with: -s +==1505052== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestExtendedVsBidomainProblem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestExtendedVsBidomainProblem_valgrind.txt new file mode 100644 index 0000000000..1c43752b0e --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestExtendedVsBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==1505033== Memcheck, a memory error detector +==1505033== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505033== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505033== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedVsBidomainProblem -malloc_debug -malloc_dump -memory_info +==1505033== Parent PID: 1488630 +==1505033== +==1505033== +==1505033== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505033== Open file descriptor 12: +==1505033== at 0xA86207D: pipe (pipe.c:29) +==1505033== by 0x13F9807D: ??? +==1505033== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505033== by 0xBF5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505033== by 0xBEF6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505033== by 0xABEDD38: PetscInitialize (pinit.c:924) +==1505033== by 0xA147153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505033== by 0xA1471A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505033== by 0x12E254: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505033== by 0x128EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505033== by 0x12C1D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505033== by 0x12C076: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505033== by 0x12C70D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505033== by 0x1272D5: main (TestExtendedVsBidomainProblem.cpp:19) +==1505033== +==1505033== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505033== at 0xA866A1C: __open_nocancel (open64_nocancel.c:39) +==1505033== by 0xA7EABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505033== by 0xA17B822: ??? +==1505033== by 0xA17B96F: ??? +==1505033== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505033== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505033== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505033== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505033== by 0xBF5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505033== by 0xBEF6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505033== by 0xABEDD38: PetscInitialize (pinit.c:924) +==1505033== by 0xA147153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505033== by 0xA1471A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505033== by 0x12E254: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505033== by 0x128EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505033== by 0x12C1D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505033== by 0x12C076: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505033== by 0x12C70D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505033== by 0x1272D5: main (TestExtendedVsBidomainProblem.cpp:19) +==1505033== +==1505033== Open file descriptor 115: +==1505033== +==1505033== +==1505033== Open file descriptor 112: +==1505033== +==1505033== +==1505033== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedVsBidomainProblem_valgrind.txt +==1505033== +==1505033== +==1505033== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505033== +==1505033== +==1505033== +==1505033== HEAP SUMMARY: +==1505033== in use at exit: 996,049 bytes in 13,923 blocks +==1505033== total heap usage: 478,686 allocs, 464,763 frees, 1,679,226,550 bytes allocated +==1505033== +==1505033== LEAK SUMMARY: +==1505033== definitely lost: 0 bytes in 0 blocks +==1505033== indirectly lost: 0 bytes in 0 blocks +==1505033== possibly lost: 0 bytes in 0 blocks +==1505033== still reachable: 24 bytes in 2 blocks +==1505033== suppressed: 996,025 bytes in 13,921 blocks +==1505033== Reachable blocks (those to which a pointer was found) are not shown. +==1505033== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505033== +==1505033== For lists of detected and suppressed errors, rerun with: -s +==1505033== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 62 from 36) diff --git a/log-files/2024-02-21_13-45-57/TestExtrinsicPullModifier_valgrind.txt b/log-files/2024-02-21_13-45-57/TestExtrinsicPullModifier_valgrind.txt new file mode 100644 index 0000000000..f30f83470b --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestExtrinsicPullModifier_valgrind.txt @@ -0,0 +1,73 @@ +==1490445== Memcheck, a memory error detector +==1490445== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490445== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490445== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestExtrinsicPullModifier -malloc_debug -malloc_dump -memory_info +==1490445== Parent PID: 1488630 +==1490445== +==1490445== +==1490445== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490445== Open file descriptor 12: +==1490445== at 0xEBAC07D: pipe (pipe.c:29) +==1490445== by 0x18A1D07D: ??? +==1490445== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490445== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490445== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490445== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490445== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490445== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490445== by 0x1FC280: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490445== by 0x1F453F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490445== by 0x1F7DA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490445== by 0x1F7CA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490445== by 0x1F82B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490445== by 0x1F2D35: main (TestExtrinsicPullModifier.cpp:18) +==1490445== +==1490445== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490445== at 0xEBB0A1C: __open_nocancel (open64_nocancel.c:39) +==1490445== by 0xEB34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490445== by 0xE49F822: ??? +==1490445== by 0xE49F96F: ??? +==1490445== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490445== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490445== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490445== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490445== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490445== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490445== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490445== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490445== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490445== by 0x1FC280: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490445== by 0x1F453F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490445== by 0x1F7DA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490445== by 0x1F7CA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490445== by 0x1F82B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490445== by 0x1F2D35: main (TestExtrinsicPullModifier.cpp:18) +==1490445== +==1490445== Open file descriptor 115: +==1490445== +==1490445== +==1490445== Open file descriptor 112: +==1490445== +==1490445== +==1490445== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtrinsicPullModifier_valgrind.txt +==1490445== +==1490445== +==1490445== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490445== +==1490445== +==1490445== +==1490445== HEAP SUMMARY: +==1490445== in use at exit: 995,585 bytes in 13,914 blocks +==1490445== total heap usage: 235,486 allocs, 221,572 frees, 1,598,876,086 bytes allocated +==1490445== +==1490445== LEAK SUMMARY: +==1490445== definitely lost: 0 bytes in 0 blocks +==1490445== indirectly lost: 0 bytes in 0 blocks +==1490445== possibly lost: 0 bytes in 0 blocks +==1490445== still reachable: 56 bytes in 3 blocks +==1490445== suppressed: 995,529 bytes in 13,911 blocks +==1490445== Reachable blocks (those to which a pointer was found) are not shown. +==1490445== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490445== +==1490445== For lists of detected and suppressed errors, rerun with: -s +==1490445== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestFemlabMeshReader_valgrind.txt b/log-files/2024-02-21_13-45-57/TestFemlabMeshReader_valgrind.txt new file mode 100644 index 0000000000..54fe31ab89 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestFemlabMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==1489169== Memcheck, a memory error detector +==1489169== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489169== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489169== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestFemlabMeshReader -malloc_debug -malloc_dump -memory_info +==1489169== Parent PID: 1488630 +==1489169== +==1489169== +==1489169== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489169== Open file descriptor 12: +==1489169== at 0x657F07D: pipe (pipe.c:29) +==1489169== by 0xFD3207D: ??? +==1489169== by 0xB6794CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489169== by 0x7BCB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489169== by 0x7B64D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489169== by 0x6859D38: PetscInitialize (pinit.c:924) +==1489169== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489169== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489169== by 0x116D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489169== by 0x11236D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489169== by 0x114DBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489169== by 0x114C5E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489169== by 0x1152F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489169== by 0x110795: main (TestFemlabMeshReader.cpp:19) +==1489169== +==1489169== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489169== at 0x6583A1C: __open_nocancel (open64_nocancel.c:39) +==1489169== by 0x6507BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489169== by 0x61F7822: ??? +==1489169== by 0x61F796F: ??? +==1489169== by 0xB71E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489169== by 0xB71E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489169== by 0xB6D4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489169== by 0xB6792DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489169== by 0x7BCB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489169== by 0x7B64D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489169== by 0x6859D38: PetscInitialize (pinit.c:924) +==1489169== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489169== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489169== by 0x116D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489169== by 0x11236D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489169== by 0x114DBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489169== by 0x114C5E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489169== by 0x1152F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489169== by 0x110795: main (TestFemlabMeshReader.cpp:19) +==1489169== +==1489169== Open file descriptor 115: +==1489169== +==1489169== +==1489169== Open file descriptor 112: +==1489169== +==1489169== +==1489169== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFemlabMeshReader_valgrind.txt +==1489169== +==1489169== +==1489169== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489169== +==1489169== +==1489169== +==1489169== HEAP SUMMARY: +==1489169== in use at exit: 995,457 bytes in 13,913 blocks +==1489169== total heap usage: 81,010 allocs, 67,097 frees, 1,572,904,455 bytes allocated +==1489169== +==1489169== LEAK SUMMARY: +==1489169== definitely lost: 0 bytes in 0 blocks +==1489169== indirectly lost: 0 bytes in 0 blocks +==1489169== possibly lost: 0 bytes in 0 blocks +==1489169== still reachable: 24 bytes in 2 blocks +==1489169== suppressed: 995,433 bytes in 13,911 blocks +==1489169== Reachable blocks (those to which a pointer was found) are not shown. +==1489169== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489169== +==1489169== For lists of detected and suppressed errors, rerun with: -s +==1489169== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt new file mode 100644 index 0000000000..3d619d042b --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==1505086== Memcheck, a memory error detector +==1505086== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505086== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505086== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreReaderAbilityExtendedBidomainProblem -malloc_debug -malloc_dump -memory_info +==1505086== Parent PID: 1488630 +==1505086== +==1505086== +==1505086== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505086== Open file descriptor 12: +==1505086== at 0xA45207D: pipe (pipe.c:29) +==1505086== by 0x13F9607D: ??? +==1505086== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505086== by 0xBB4B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505086== by 0xBAE4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505086== by 0xA7DBD38: PetscInitialize (pinit.c:924) +==1505086== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505086== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505086== by 0x128E4C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505086== by 0x123553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505086== by 0x126214: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505086== by 0x12610F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505086== by 0x126723: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505086== by 0x121D55: main (TestFibreReaderAbilityExtendedBidomainProblem.cpp:18) +==1505086== +==1505086== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505086== at 0xA456A1C: __open_nocancel (open64_nocancel.c:39) +==1505086== by 0xA3DABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505086== by 0x9D6B822: ??? +==1505086== by 0x9D6B96F: ??? +==1505086== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505086== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505086== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505086== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505086== by 0xBB4B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505086== by 0xBAE4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505086== by 0xA7DBD38: PetscInitialize (pinit.c:924) +==1505086== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505086== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505086== by 0x128E4C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505086== by 0x123553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505086== by 0x126214: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505086== by 0x12610F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505086== by 0x126723: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505086== by 0x121D55: main (TestFibreReaderAbilityExtendedBidomainProblem.cpp:18) +==1505086== +==1505086== Open file descriptor 115: +==1505086== +==1505086== +==1505086== Open file descriptor 112: +==1505086== +==1505086== +==1505086== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt +==1505086== +==1505086== +==1505086== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505086== +==1505086== +==1505086== +==1505086== HEAP SUMMARY: +==1505086== in use at exit: 995,569 bytes in 13,913 blocks +==1505086== total heap usage: 128,373 allocs, 114,460 frees, 1,576,025,441 bytes allocated +==1505086== +==1505086== LEAK SUMMARY: +==1505086== definitely lost: 0 bytes in 0 blocks +==1505086== indirectly lost: 0 bytes in 0 blocks +==1505086== possibly lost: 0 bytes in 0 blocks +==1505086== still reachable: 24 bytes in 2 blocks +==1505086== suppressed: 995,545 bytes in 13,911 blocks +==1505086== Reachable blocks (those to which a pointer was found) are not shown. +==1505086== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505086== +==1505086== For lists of detected and suppressed errors, rerun with: -s +==1505086== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestFibreReader_valgrind.txt b/log-files/2024-02-21_13-45-57/TestFibreReader_valgrind.txt new file mode 100644 index 0000000000..7f8a675736 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestFibreReader_valgrind.txt @@ -0,0 +1,36 @@ +==1505118== Memcheck, a memory error detector +==1505118== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505118== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505118== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreReader -malloc_debug -malloc_dump -memory_info +==1505118== Parent PID: 1488630 +==1505118== +==1505118== +==1505118== FILE DESCRIPTORS: 7 open (3 std) at exit. +==1505118== Open file descriptor 115: +==1505118== +==1505118== +==1505118== Open file descriptor 112: +==1505118== +==1505118== +==1505118== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreReader_valgrind.txt +==1505118== +==1505118== +==1505118== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505118== +==1505118== +==1505118== +==1505118== HEAP SUMMARY: +==1505118== in use at exit: 24 bytes in 2 blocks +==1505118== total heap usage: 9,202 allocs, 9,200 frees, 3,301,210 bytes allocated +==1505118== +==1505118== LEAK SUMMARY: +==1505118== definitely lost: 0 bytes in 0 blocks +==1505118== indirectly lost: 0 bytes in 0 blocks +==1505118== possibly lost: 0 bytes in 0 blocks +==1505118== still reachable: 24 bytes in 2 blocks +==1505118== suppressed: 0 bytes in 0 blocks +==1505118== Reachable blocks (those to which a pointer was found) are not shown. +==1505118== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505118== +==1505118== For lists of detected and suppressed errors, rerun with: -s +==1505118== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-02-21_13-45-57/TestFibreWriter_valgrind.txt b/log-files/2024-02-21_13-45-57/TestFibreWriter_valgrind.txt new file mode 100644 index 0000000000..5609dea6fc --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestFibreWriter_valgrind.txt @@ -0,0 +1,73 @@ +==1505131== Memcheck, a memory error detector +==1505131== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505131== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505131== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreWriter -malloc_debug -malloc_dump -memory_info +==1505131== Parent PID: 1488630 +==1505131== +==1505131== +==1505131== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505131== Open file descriptor 12: +==1505131== at 0x9A2507D: pipe (pipe.c:29) +==1505131== by 0x13F9707D: ??? +==1505131== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505131== by 0x965A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505131== by 0x95F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505131== by 0x82C4D38: PetscInitialize (pinit.c:924) +==1505131== by 0x819A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505131== by 0x819A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505131== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505131== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505131== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505131== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505131== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505131== by 0x113DD5: main (TestFibreWriter.cpp:18) +==1505131== +==1505131== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505131== at 0x9A29A1C: __open_nocancel (open64_nocancel.c:39) +==1505131== by 0x99ADBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505131== by 0x954E822: ??? +==1505131== by 0x954E96F: ??? +==1505131== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505131== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505131== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505131== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505131== by 0x965A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505131== by 0x95F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505131== by 0x82C4D38: PetscInitialize (pinit.c:924) +==1505131== by 0x819A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505131== by 0x819A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505131== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505131== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505131== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505131== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505131== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505131== by 0x113DD5: main (TestFibreWriter.cpp:18) +==1505131== +==1505131== Open file descriptor 115: +==1505131== +==1505131== +==1505131== Open file descriptor 112: +==1505131== +==1505131== +==1505131== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreWriter_valgrind.txt +==1505131== +==1505131== +==1505131== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505131== +==1505131== +==1505131== +==1505131== HEAP SUMMARY: +==1505131== in use at exit: 995,569 bytes in 13,913 blocks +==1505131== total heap usage: 69,877 allocs, 55,964 frees, 1,572,812,889 bytes allocated +==1505131== +==1505131== LEAK SUMMARY: +==1505131== definitely lost: 0 bytes in 0 blocks +==1505131== indirectly lost: 0 bytes in 0 blocks +==1505131== possibly lost: 0 bytes in 0 blocks +==1505131== still reachable: 24 bytes in 2 blocks +==1505131== suppressed: 995,545 bytes in 13,911 blocks +==1505131== Reachable blocks (those to which a pointer was found) are not shown. +==1505131== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505131== +==1505131== For lists of detected and suppressed errors, rerun with: -s +==1505131== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestFileComparison_valgrind.txt b/log-files/2024-02-21_13-45-57/TestFileComparison_valgrind.txt new file mode 100644 index 0000000000..338ca106d2 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestFileComparison_valgrind.txt @@ -0,0 +1,73 @@ +==1488706== Memcheck, a memory error detector +==1488706== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488706== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488706== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFileComparison -malloc_debug -malloc_dump -memory_info +==1488706== Parent PID: 1488630 +==1488706== +==1488706== +==1488706== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488706== Open file descriptor 12: +==1488706== at 0x4CB407D: pipe (pipe.c:29) +==1488706== by 0xAEA607D: ??? +==1488706== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488706== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488706== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488706== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488706== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488706== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488706== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488706== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488706== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488706== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488706== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488706== by 0x110B35: main (TestFileComparison.cpp:18) +==1488706== +==1488706== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488706== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==1488706== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488706== by 0x492E822: ??? +==1488706== by 0x492E96F: ??? +==1488706== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488706== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488706== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488706== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488706== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488706== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488706== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488706== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488706== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488706== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488706== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488706== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488706== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488706== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488706== by 0x110B35: main (TestFileComparison.cpp:18) +==1488706== +==1488706== Open file descriptor 115: +==1488706== +==1488706== +==1488706== Open file descriptor 112: +==1488706== +==1488706== +==1488706== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFileComparison_valgrind.txt +==1488706== +==1488706== +==1488706== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488706== +==1488706== +==1488706== +==1488706== HEAP SUMMARY: +==1488706== in use at exit: 995,073 bytes in 13,913 blocks +==1488706== total heap usage: 58,047 allocs, 44,134 frees, 1,571,695,900 bytes allocated +==1488706== +==1488706== LEAK SUMMARY: +==1488706== definitely lost: 0 bytes in 0 blocks +==1488706== indirectly lost: 0 bytes in 0 blocks +==1488706== possibly lost: 0 bytes in 0 blocks +==1488706== still reachable: 24 bytes in 2 blocks +==1488706== suppressed: 995,049 bytes in 13,911 blocks +==1488706== Reachable blocks (those to which a pointer was found) are not shown. +==1488706== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488706== +==1488706== For lists of detected and suppressed errors, rerun with: -s +==1488706== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestFileFinder_valgrind.txt b/log-files/2024-02-21_13-45-57/TestFileFinder_valgrind.txt new file mode 100644 index 0000000000..a9cf71561f --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestFileFinder_valgrind.txt @@ -0,0 +1,73 @@ +==1488705== Memcheck, a memory error detector +==1488705== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488705== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488705== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFileFinder -malloc_debug -malloc_dump -memory_info +==1488705== Parent PID: 1488630 +==1488705== +==1488705== +==1488705== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488705== Open file descriptor 12: +==1488705== at 0x616B07D: pipe (pipe.c:29) +==1488705== by 0xAEA607D: ??? +==1488705== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488705== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488705== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488705== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488705== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488705== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488705== by 0x118727: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488705== by 0x113B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488705== by 0x1166DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488705== by 0x11657A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488705== by 0x116C11: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488705== by 0x111FB5: main (TestFileFinder.cpp:19) +==1488705== +==1488705== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488705== at 0x616FA1C: __open_nocancel (open64_nocancel.c:39) +==1488705== by 0x60F3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488705== by 0x5CAC822: ??? +==1488705== by 0x5CAC96F: ??? +==1488705== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488705== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488705== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488705== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488705== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488705== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488705== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488705== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488705== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488705== by 0x118727: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488705== by 0x113B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488705== by 0x1166DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488705== by 0x11657A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488705== by 0x116C11: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488705== by 0x111FB5: main (TestFileFinder.cpp:19) +==1488705== +==1488705== Open file descriptor 115: +==1488705== +==1488705== +==1488705== Open file descriptor 112: +==1488705== +==1488705== +==1488705== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFileFinder_valgrind.txt +==1488705== +==1488705== +==1488705== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488705== +==1488705== +==1488705== +==1488705== HEAP SUMMARY: +==1488705== in use at exit: 995,073 bytes in 13,913 blocks +==1488705== total heap usage: 61,400 allocs, 47,487 frees, 1,573,365,813 bytes allocated +==1488705== +==1488705== LEAK SUMMARY: +==1488705== definitely lost: 0 bytes in 0 blocks +==1488705== indirectly lost: 0 bytes in 0 blocks +==1488705== possibly lost: 0 bytes in 0 blocks +==1488705== still reachable: 24 bytes in 2 blocks +==1488705== suppressed: 995,049 bytes in 13,911 blocks +==1488705== Reachable blocks (those to which a pointer was found) are not shown. +==1488705== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488705== +==1488705== For lists of detected and suppressed errors, rerun with: -s +==1488705== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestFineCoarseMeshPair_valgrind.txt b/log-files/2024-02-21_13-45-57/TestFineCoarseMeshPair_valgrind.txt new file mode 100644 index 0000000000..fc419f99ca --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestFineCoarseMeshPair_valgrind.txt @@ -0,0 +1,73 @@ +==1489632== Memcheck, a memory error detector +==1489632== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489632== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489632== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestFineCoarseMeshPair -malloc_debug -malloc_dump -memory_info +==1489632== Parent PID: 1488630 +==1489632== +==1489632== +==1489632== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489632== Open file descriptor 12: +==1489632== at 0x6C6107D: pipe (pipe.c:29) +==1489632== by 0x1014507D: ??? +==1489632== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489632== by 0x86D5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489632== by 0x866ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489632== by 0x6FB0D38: PetscInitialize (pinit.c:924) +==1489632== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489632== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489632== by 0x1229DA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489632== by 0x11DBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489632== by 0x120762: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489632== by 0x120602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489632== by 0x120C99: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489632== by 0x11C015: main (TestFineCoarseMeshPair.cpp:19) +==1489632== +==1489632== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489632== at 0x6C65A1C: __open_nocancel (open64_nocancel.c:39) +==1489632== by 0x6BE9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489632== by 0x6596822: ??? +==1489632== by 0x659696F: ??? +==1489632== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489632== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489632== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489632== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489632== by 0x86D5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489632== by 0x866ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489632== by 0x6FB0D38: PetscInitialize (pinit.c:924) +==1489632== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489632== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489632== by 0x1229DA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489632== by 0x11DBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489632== by 0x120762: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489632== by 0x120602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489632== by 0x120C99: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489632== by 0x11C015: main (TestFineCoarseMeshPair.cpp:19) +==1489632== +==1489632== Open file descriptor 115: +==1489632== +==1489632== +==1489632== Open file descriptor 112: +==1489632== +==1489632== +==1489632== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFineCoarseMeshPair_valgrind.txt +==1489632== +==1489632== +==1489632== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489632== +==1489632== +==1489632== +==1489632== HEAP SUMMARY: +==1489632== in use at exit: 995,489 bytes in 13,913 blocks +==1489632== total heap usage: 1,523,920 allocs, 1,510,007 frees, 1,712,746,184 bytes allocated +==1489632== +==1489632== LEAK SUMMARY: +==1489632== definitely lost: 0 bytes in 0 blocks +==1489632== indirectly lost: 0 bytes in 0 blocks +==1489632== possibly lost: 0 bytes in 0 blocks +==1489632== still reachable: 24 bytes in 2 blocks +==1489632== suppressed: 995,465 bytes in 13,911 blocks +==1489632== Reachable blocks (those to which a pointer was found) are not shown. +==1489632== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489632== +==1489632== For lists of detected and suppressed errors, rerun with: -s +==1489632== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestFloatingPointDivisionByZeroPetsc_valgrind.txt b/log-files/2024-02-21_13-45-57/TestFloatingPointDivisionByZeroPetsc_valgrind.txt new file mode 100644 index 0000000000..08b471e83a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestFloatingPointDivisionByZeroPetsc_valgrind.txt @@ -0,0 +1,73 @@ +==1488709== Memcheck, a memory error detector +==1488709== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488709== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488709== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFloatingPointDivisionByZeroPetsc -malloc_debug -malloc_dump -memory_info +==1488709== Parent PID: 1488630 +==1488709== +==1488709== +==1488709== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488709== Open file descriptor 12: +==1488709== at 0x4CB407D: pipe (pipe.c:29) +==1488709== by 0xAEA607D: ??? +==1488709== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488709== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488709== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488709== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488709== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488709== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488709== by 0x1123B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488709== by 0x10DFCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488709== by 0x110452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488709== by 0x1102F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488709== by 0x110989: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488709== by 0x10C3F5: main (TestFloatingPointDivisionByZeroPetsc.cpp:19) +==1488709== +==1488709== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488709== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==1488709== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488709== by 0x492E822: ??? +==1488709== by 0x492E96F: ??? +==1488709== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488709== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488709== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488709== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488709== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488709== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488709== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488709== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488709== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488709== by 0x1123B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488709== by 0x10DFCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488709== by 0x110452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488709== by 0x1102F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488709== by 0x110989: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488709== by 0x10C3F5: main (TestFloatingPointDivisionByZeroPetsc.cpp:19) +==1488709== +==1488709== Open file descriptor 115: +==1488709== +==1488709== +==1488709== Open file descriptor 112: +==1488709== +==1488709== +==1488709== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFloatingPointDivisionByZeroPetsc_valgrind.txt +==1488709== +==1488709== +==1488709== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488709== +==1488709== +==1488709== +==1488709== HEAP SUMMARY: +==1488709== in use at exit: 995,073 bytes in 13,913 blocks +==1488709== total heap usage: 57,555 allocs, 43,642 frees, 1,571,237,015 bytes allocated +==1488709== +==1488709== LEAK SUMMARY: +==1488709== definitely lost: 0 bytes in 0 blocks +==1488709== indirectly lost: 0 bytes in 0 blocks +==1488709== possibly lost: 0 bytes in 0 blocks +==1488709== still reachable: 24 bytes in 2 blocks +==1488709== suppressed: 995,049 bytes in 13,911 blocks +==1488709== Reachable blocks (those to which a pointer was found) are not shown. +==1488709== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488709== +==1488709== For lists of detected and suppressed errors, rerun with: -s +==1488709== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestFloatingPointDivisionByZero_valgrind.txt b/log-files/2024-02-21_13-45-57/TestFloatingPointDivisionByZero_valgrind.txt new file mode 100644 index 0000000000..06526fc824 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestFloatingPointDivisionByZero_valgrind.txt @@ -0,0 +1,73 @@ +==1488707== Memcheck, a memory error detector +==1488707== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488707== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488707== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFloatingPointDivisionByZero -malloc_debug -malloc_dump -memory_info +==1488707== Parent PID: 1488630 +==1488707== +==1488707== +==1488707== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488707== Open file descriptor 12: +==1488707== at 0x616B07D: pipe (pipe.c:29) +==1488707== by 0xAEA607D: ??? +==1488707== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488707== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488707== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488707== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488707== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488707== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488707== by 0x11245F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488707== by 0x10E06D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488707== by 0x1104F2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488707== by 0x110392: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488707== by 0x110A29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488707== by 0x10C495: main (TestFloatingPointDivisionByZero.cpp:19) +==1488707== +==1488707== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488707== at 0x616FA1C: __open_nocancel (open64_nocancel.c:39) +==1488707== by 0x60F3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488707== by 0x5CAC822: ??? +==1488707== by 0x5CAC96F: ??? +==1488707== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488707== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488707== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488707== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488707== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488707== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488707== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488707== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488707== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488707== by 0x11245F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488707== by 0x10E06D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488707== by 0x1104F2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488707== by 0x110392: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488707== by 0x110A29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488707== by 0x10C495: main (TestFloatingPointDivisionByZero.cpp:19) +==1488707== +==1488707== Open file descriptor 115: +==1488707== +==1488707== +==1488707== Open file descriptor 112: +==1488707== +==1488707== +==1488707== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFloatingPointDivisionByZero_valgrind.txt +==1488707== +==1488707== +==1488707== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488707== +==1488707== +==1488707== +==1488707== HEAP SUMMARY: +==1488707== in use at exit: 995,073 bytes in 13,913 blocks +==1488707== total heap usage: 57,564 allocs, 43,651 frees, 1,571,237,317 bytes allocated +==1488707== +==1488707== LEAK SUMMARY: +==1488707== definitely lost: 0 bytes in 0 blocks +==1488707== indirectly lost: 0 bytes in 0 blocks +==1488707== possibly lost: 0 bytes in 0 blocks +==1488707== still reachable: 24 bytes in 2 blocks +==1488707== suppressed: 995,049 bytes in 13,911 blocks +==1488707== Reachable blocks (those to which a pointer was found) are not shown. +==1488707== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488707== +==1488707== For lists of detected and suppressed errors, rerun with: -s +==1488707== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestForces_valgrind.txt b/log-files/2024-02-21_13-45-57/TestForces_valgrind.txt new file mode 100644 index 0000000000..759c18d2a5 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestForces_valgrind.txt @@ -0,0 +1,73 @@ +==1490278== Memcheck, a memory error detector +==1490278== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490278== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490278== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestForces -malloc_debug -malloc_dump -memory_info +==1490278== Parent PID: 1488630 +==1490278== +==1490278== +==1490278== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490278== Open file descriptor 12: +==1490278== at 0xEC9507D: pipe (pipe.c:29) +==1490278== by 0x18A1D07D: ??? +==1490278== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490278== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490278== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490278== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490278== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490278== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490278== by 0x14FA72: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490278== by 0x147FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490278== by 0x14B1C0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490278== by 0x14B060: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490278== by 0x14B6F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490278== by 0x1463E5: main (TestForces.cpp:19) +==1490278== +==1490278== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490278== at 0xEC99A1C: __open_nocancel (open64_nocancel.c:39) +==1490278== by 0xEC1DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490278== by 0xE49F822: ??? +==1490278== by 0xE49F96F: ??? +==1490278== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490278== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490278== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490278== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490278== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490278== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490278== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490278== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490278== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490278== by 0x14FA72: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490278== by 0x147FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490278== by 0x14B1C0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490278== by 0x14B060: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490278== by 0x14B6F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490278== by 0x1463E5: main (TestForces.cpp:19) +==1490278== +==1490278== Open file descriptor 115: +==1490278== +==1490278== +==1490278== Open file descriptor 112: +==1490278== +==1490278== +==1490278== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestForces_valgrind.txt +==1490278== +==1490278== +==1490278== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490278== +==1490278== +==1490278== +==1490278== HEAP SUMMARY: +==1490278== in use at exit: 995,585 bytes in 13,914 blocks +==1490278== total heap usage: 112,408 allocs, 98,494 frees, 1,577,124,564 bytes allocated +==1490278== +==1490278== LEAK SUMMARY: +==1490278== definitely lost: 0 bytes in 0 blocks +==1490278== indirectly lost: 0 bytes in 0 blocks +==1490278== possibly lost: 0 bytes in 0 blocks +==1490278== still reachable: 56 bytes in 3 blocks +==1490278== suppressed: 995,529 bytes in 13,911 blocks +==1490278== Reachable blocks (those to which a pointer was found) are not shown. +==1490278== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490278== +==1490278== For lists of detected and suppressed errors, rerun with: -s +==1490278== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestFourthOrderTensor_valgrind.txt b/log-files/2024-02-21_13-45-57/TestFourthOrderTensor_valgrind.txt new file mode 100644 index 0000000000..6c5cd1188b --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestFourthOrderTensor_valgrind.txt @@ -0,0 +1,73 @@ +==1488928== Memcheck, a memory error detector +==1488928== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488928== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488928== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestFourthOrderTensor -malloc_debug -malloc_dump -memory_info +==1488928== Parent PID: 1488630 +==1488928== +==1488928== +==1488928== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488928== Open file descriptor 12: +==1488928== at 0x4CB607D: pipe (pipe.c:29) +==1488928== by 0xAEA607D: ??? +==1488928== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488928== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488928== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488928== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488928== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488928== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488928== by 0x114306: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488928== by 0x10FD33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488928== by 0x1122B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488928== by 0x1121AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488928== by 0x1127BF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488928== by 0x10E535: main (TestFourthOrderTensor.cpp:18) +==1488928== +==1488928== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488928== at 0x4CBAA1C: __open_nocancel (open64_nocancel.c:39) +==1488928== by 0x4C3EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488928== by 0x492E822: ??? +==1488928== by 0x492E96F: ??? +==1488928== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488928== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488928== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488928== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488928== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488928== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488928== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488928== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488928== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488928== by 0x114306: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488928== by 0x10FD33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488928== by 0x1122B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488928== by 0x1121AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488928== by 0x1127BF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488928== by 0x10E535: main (TestFourthOrderTensor.cpp:18) +==1488928== +==1488928== Open file descriptor 115: +==1488928== +==1488928== +==1488928== Open file descriptor 112: +==1488928== +==1488928== +==1488928== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFourthOrderTensor_valgrind.txt +==1488928== +==1488928== +==1488928== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488928== +==1488928== +==1488928== +==1488928== HEAP SUMMARY: +==1488928== in use at exit: 995,073 bytes in 13,913 blocks +==1488928== total heap usage: 57,588 allocs, 43,675 frees, 1,571,244,673 bytes allocated +==1488928== +==1488928== LEAK SUMMARY: +==1488928== definitely lost: 0 bytes in 0 blocks +==1488928== indirectly lost: 0 bytes in 0 blocks +==1488928== possibly lost: 0 bytes in 0 blocks +==1488928== still reachable: 24 bytes in 2 blocks +==1488928== suppressed: 995,049 bytes in 13,911 blocks +==1488928== Reachable blocks (those to which a pointer was found) are not shown. +==1488928== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488928== +==1488928== For lists of detected and suppressed errors, rerun with: -s +==1488928== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestGIModifiedModels_valgrind.txt b/log-files/2024-02-21_13-45-57/TestGIModifiedModels_valgrind.txt new file mode 100644 index 0000000000..b41fdaf7fb --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestGIModifiedModels_valgrind.txt @@ -0,0 +1,73 @@ +==1505115== Memcheck, a memory error detector +==1505115== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505115== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505115== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestGIModifiedModels -malloc_debug -malloc_dump -memory_info +==1505115== Parent PID: 1488630 +==1505115== +==1505115== +==1505115== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505115== Open file descriptor 12: +==1505115== at 0x886A07D: pipe (pipe.c:29) +==1505115== by 0x13F9607D: ??? +==1505115== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505115== by 0x9F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505115== by 0x9EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505115== by 0x8BF3D38: PetscInitialize (pinit.c:924) +==1505115== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505115== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505115== by 0x12C2F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505115== by 0x126ECB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505115== by 0x129968: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505115== by 0x129808: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505115== by 0x129E9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505115== by 0x122165: main (TestGIModifiedModels.cpp:19) +==1505115== +==1505115== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505115== at 0x886EA1C: __open_nocancel (open64_nocancel.c:39) +==1505115== by 0x87F2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505115== by 0x8486822: ??? +==1505115== by 0x848696F: ??? +==1505115== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505115== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505115== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505115== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505115== by 0x9F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505115== by 0x9EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505115== by 0x8BF3D38: PetscInitialize (pinit.c:924) +==1505115== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505115== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505115== by 0x12C2F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505115== by 0x126ECB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505115== by 0x129968: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505115== by 0x129808: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505115== by 0x129E9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505115== by 0x122165: main (TestGIModifiedModels.cpp:19) +==1505115== +==1505115== Open file descriptor 115: +==1505115== +==1505115== +==1505115== Open file descriptor 112: +==1505115== +==1505115== +==1505115== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGIModifiedModels_valgrind.txt +==1505115== +==1505115== +==1505115== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505115== +==1505115== +==1505115== +==1505115== HEAP SUMMARY: +==1505115== in use at exit: 995,510 bytes in 13,909 blocks +==1505115== total heap usage: 1,465,869 allocs, 1,451,960 frees, 1,847,577,445 bytes allocated +==1505115== +==1505115== LEAK SUMMARY: +==1505115== definitely lost: 0 bytes in 0 blocks +==1505115== indirectly lost: 0 bytes in 0 blocks +==1505115== possibly lost: 0 bytes in 0 blocks +==1505115== still reachable: 24 bytes in 2 blocks +==1505115== suppressed: 995,486 bytes in 13,907 blocks +==1505115== Reachable blocks (those to which a pointer was found) are not shown. +==1505115== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505115== +==1505115== For lists of detected and suppressed errors, rerun with: -s +==1505115== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestGRL1IvpOdeSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestGRL1IvpOdeSolver_valgrind.txt new file mode 100644 index 0000000000..cf0ce69cb4 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestGRL1IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489403== Memcheck, a memory error detector +==1489403== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489403== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489403== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestGRL1IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==1489403== Parent PID: 1488630 +==1489403== +==1489403== +==1489403== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489403== Open file descriptor 12: +==1489403== at 0x503C07D: pipe (pipe.c:29) +==1489403== by 0xB1E807D: ??? +==1489403== by 0x8CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489403== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489403== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489403== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489403== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489403== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489403== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489403== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489403== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489403== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489403== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489403== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) +==1489403== +==1489403== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489403== at 0x5040A1C: __open_nocancel (open64_nocancel.c:39) +==1489403== by 0x4FC4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489403== by 0x4B71822: ??? +==1489403== by 0x4B7196F: ??? +==1489403== by 0x8D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489403== by 0x8D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489403== by 0x8D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489403== by 0x8CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489403== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489403== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489403== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489403== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489403== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489403== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489403== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489403== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489403== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489403== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489403== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) +==1489403== +==1489403== Open file descriptor 115: +==1489403== +==1489403== +==1489403== Open file descriptor 112: +==1489403== +==1489403== +==1489403== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGRL1IvpOdeSolver_valgrind.txt +==1489403== +==1489403== +==1489403== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489403== +==1489403== +==1489403== +==1489403== HEAP SUMMARY: +==1489403== in use at exit: 995,137 bytes in 13,913 blocks +==1489403== total heap usage: 63,650 allocs, 49,737 frees, 1,571,744,104 bytes allocated +==1489403== +==1489403== LEAK SUMMARY: +==1489403== definitely lost: 0 bytes in 0 blocks +==1489403== indirectly lost: 0 bytes in 0 blocks +==1489403== possibly lost: 0 bytes in 0 blocks +==1489403== still reachable: 24 bytes in 2 blocks +==1489403== suppressed: 995,113 bytes in 13,911 blocks +==1489403== Reachable blocks (those to which a pointer was found) are not shown. +==1489403== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489403== +==1489403== For lists of detected and suppressed errors, rerun with: -s +==1489403== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestGRL2IvpOdeSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestGRL2IvpOdeSolver_valgrind.txt new file mode 100644 index 0000000000..0bd3af8873 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestGRL2IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489404== Memcheck, a memory error detector +==1489404== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489404== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489404== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestGRL2IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==1489404== Parent PID: 1488630 +==1489404== +==1489404== +==1489404== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489404== Open file descriptor 12: +==1489404== at 0x503C07D: pipe (pipe.c:29) +==1489404== by 0xB1E807D: ??? +==1489404== by 0x8CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489404== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489404== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489404== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489404== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489404== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489404== by 0x127082: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489404== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489404== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489404== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489404== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489404== by 0x11EEA5: main (TestGRL2IvpOdeSolver.cpp:19) +==1489404== +==1489404== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489404== at 0x5040A1C: __open_nocancel (open64_nocancel.c:39) +==1489404== by 0x4FC4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489404== by 0x4B71822: ??? +==1489404== by 0x4B7196F: ??? +==1489404== by 0x8D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489404== by 0x8D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489404== by 0x8D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489404== by 0x8CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489404== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489404== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489404== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489404== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489404== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489404== by 0x127082: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489404== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489404== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489404== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489404== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489404== by 0x11EEA5: main (TestGRL2IvpOdeSolver.cpp:19) +==1489404== +==1489404== Open file descriptor 115: +==1489404== +==1489404== +==1489404== Open file descriptor 112: +==1489404== +==1489404== +==1489404== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGRL2IvpOdeSolver_valgrind.txt +==1489404== +==1489404== +==1489404== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489404== +==1489404== +==1489404== +==1489404== HEAP SUMMARY: +==1489404== in use at exit: 995,137 bytes in 13,913 blocks +==1489404== total heap usage: 64,024 allocs, 50,111 frees, 1,571,793,096 bytes allocated +==1489404== +==1489404== LEAK SUMMARY: +==1489404== definitely lost: 0 bytes in 0 blocks +==1489404== indirectly lost: 0 bytes in 0 blocks +==1489404== possibly lost: 0 bytes in 0 blocks +==1489404== still reachable: 24 bytes in 2 blocks +==1489404== suppressed: 995,113 bytes in 13,911 blocks +==1489404== Reachable blocks (those to which a pointer was found) are not shown. +==1489404== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489404== +==1489404== For lists of detected and suppressed errors, rerun with: -s +==1489404== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestGaussianQuadratureRule_valgrind.txt b/log-files/2024-02-21_13-45-57/TestGaussianQuadratureRule_valgrind.txt new file mode 100644 index 0000000000..f4e490e677 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestGaussianQuadratureRule_valgrind.txt @@ -0,0 +1,73 @@ +==1489633== Memcheck, a memory error detector +==1489633== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489633== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489633== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestGaussianQuadratureRule -malloc_debug -malloc_dump -memory_info +==1489633== Parent PID: 1488630 +==1489633== +==1489633== +==1489633== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489633== Open file descriptor 12: +==1489633== at 0x6A0307D: pipe (pipe.c:29) +==1489633== by 0x1014507D: ??? +==1489633== by 0xBF8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489633== by 0x8477418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489633== by 0x8410D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489633== by 0x6D52D38: PetscInitialize (pinit.c:924) +==1489633== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489633== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489633== by 0x11A084: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489633== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489633== by 0x1180E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489633== by 0x117F82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489633== by 0x118619: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489633== by 0x113AB5: main (TestGaussianQuadratureRule.cpp:19) +==1489633== +==1489633== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489633== at 0x6A07A1C: __open_nocancel (open64_nocancel.c:39) +==1489633== by 0x698BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489633== by 0x6596822: ??? +==1489633== by 0x659696F: ??? +==1489633== by 0xC0346DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489633== by 0xC034938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489633== by 0xBFEA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489633== by 0xBF8D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489633== by 0x8477418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489633== by 0x8410D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489633== by 0x6D52D38: PetscInitialize (pinit.c:924) +==1489633== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489633== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489633== by 0x11A084: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489633== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489633== by 0x1180E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489633== by 0x117F82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489633== by 0x118619: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489633== by 0x113AB5: main (TestGaussianQuadratureRule.cpp:19) +==1489633== +==1489633== Open file descriptor 115: +==1489633== +==1489633== +==1489633== Open file descriptor 112: +==1489633== +==1489633== +==1489633== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGaussianQuadratureRule_valgrind.txt +==1489633== +==1489633== +==1489633== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489633== +==1489633== +==1489633== +==1489633== HEAP SUMMARY: +==1489633== in use at exit: 995,489 bytes in 13,913 blocks +==1489633== total heap usage: 60,138 allocs, 46,225 frees, 1,571,467,496 bytes allocated +==1489633== +==1489633== LEAK SUMMARY: +==1489633== definitely lost: 0 bytes in 0 blocks +==1489633== indirectly lost: 0 bytes in 0 blocks +==1489633== possibly lost: 0 bytes in 0 blocks +==1489633== still reachable: 24 bytes in 2 blocks +==1489633== suppressed: 995,465 bytes in 13,911 blocks +==1489633== Reachable blocks (those to which a pointer was found) are not shown. +==1489633== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489633== +==1489633== For lists of detected and suppressed errors, rerun with: -s +==1489633== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestGeneralizedRushLarsen_valgrind.txt b/log-files/2024-02-21_13-45-57/TestGeneralizedRushLarsen_valgrind.txt new file mode 100644 index 0000000000..a73fea5a00 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestGeneralizedRushLarsen_valgrind.txt @@ -0,0 +1,73 @@ +==1505417== Memcheck, a memory error detector +==1505417== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505417== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505417== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestGeneralizedRushLarsen -malloc_debug -malloc_dump -memory_info +==1505417== Parent PID: 1488630 +==1505417== +==1505417== +==1505417== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505417== Open file descriptor 12: +==1505417== at 0x87B307D: pipe (pipe.c:29) +==1505417== by 0x13F9707D: ??? +==1505417== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505417== by 0x9EAE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505417== by 0x9E47D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505417== by 0x8B3ED38: PetscInitialize (pinit.c:924) +==1505417== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505417== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505417== by 0x11C6A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505417== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505417== by 0x11A2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505417== by 0x11A14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505417== by 0x11A7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505417== by 0x115CD5: main (TestGeneralizedRushLarsen.cpp:19) +==1505417== +==1505417== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505417== at 0x87B7A1C: __open_nocancel (open64_nocancel.c:39) +==1505417== by 0x873BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505417== by 0x8413822: ??? +==1505417== by 0x841396F: ??? +==1505417== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505417== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505417== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505417== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505417== by 0x9EAE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505417== by 0x9E47D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505417== by 0x8B3ED38: PetscInitialize (pinit.c:924) +==1505417== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505417== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505417== by 0x11C6A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505417== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505417== by 0x11A2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505417== by 0x11A14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505417== by 0x11A7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505417== by 0x115CD5: main (TestGeneralizedRushLarsen.cpp:19) +==1505417== +==1505417== Open file descriptor 115: +==1505417== +==1505417== +==1505417== Open file descriptor 112: +==1505417== +==1505417== +==1505417== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGeneralizedRushLarsen_valgrind.txt +==1505417== +==1505417== +==1505417== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505417== +==1505417== +==1505417== +==1505417== HEAP SUMMARY: +==1505417== in use at exit: 999,187 bytes in 13,917 blocks +==1505417== total heap usage: 3,066,713 allocs, 3,052,796 frees, 1,845,830,208 bytes allocated +==1505417== +==1505417== LEAK SUMMARY: +==1505417== definitely lost: 0 bytes in 0 blocks +==1505417== indirectly lost: 0 bytes in 0 blocks +==1505417== possibly lost: 0 bytes in 0 blocks +==1505417== still reachable: 3,701 bytes in 10 blocks +==1505417== suppressed: 995,486 bytes in 13,907 blocks +==1505417== Reachable blocks (those to which a pointer was found) are not shown. +==1505417== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505417== +==1505417== For lists of detected and suppressed errors, rerun with: -s +==1505417== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestGenericEventHandler_valgrind.txt b/log-files/2024-02-21_13-45-57/TestGenericEventHandler_valgrind.txt new file mode 100644 index 0000000000..28376a9fee --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestGenericEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==1488710== Memcheck, a memory error detector +==1488710== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488710== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488710== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestGenericEventHandler -malloc_debug -malloc_dump -memory_info +==1488710== Parent PID: 1488630 +==1488710== +==1488710== +==1488710== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488710== Open file descriptor 12: +==1488710== at 0x4DED07D: pipe (pipe.c:29) +==1488710== by 0xAEA407D: ??? +==1488710== by 0x643C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488710== by 0x4A3A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488710== by 0x49D3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488710== by 0x5038D38: PetscInitialize (pinit.c:924) +==1488710== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488710== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488710== by 0x1166EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488710== by 0x11164D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488710== by 0x11478C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488710== by 0x11462C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488710== by 0x114CC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488710== by 0x10FA75: main (TestGenericEventHandler.cpp:19) +==1488710== +==1488710== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488710== at 0x4DF1A1C: __open_nocancel (open64_nocancel.c:39) +==1488710== by 0x4D75BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488710== by 0x492E822: ??? +==1488710== by 0x492E96F: ??? +==1488710== by 0x64E36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488710== by 0x64E3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488710== by 0x6499922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488710== by 0x643C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488710== by 0x4A3A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488710== by 0x49D3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488710== by 0x5038D38: PetscInitialize (pinit.c:924) +==1488710== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488710== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488710== by 0x1166EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488710== by 0x11164D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488710== by 0x11478C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488710== by 0x11462C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488710== by 0x114CC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488710== by 0x10FA75: main (TestGenericEventHandler.cpp:19) +==1488710== +==1488710== Open file descriptor 115: +==1488710== +==1488710== +==1488710== Open file descriptor 112: +==1488710== +==1488710== +==1488710== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGenericEventHandler_valgrind.txt +==1488710== +==1488710== +==1488710== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488710== +==1488710== +==1488710== +==1488710== HEAP SUMMARY: +==1488710== in use at exit: 995,073 bytes in 13,913 blocks +==1488710== total heap usage: 57,645 allocs, 43,732 frees, 1,571,247,412 bytes allocated +==1488710== +==1488710== LEAK SUMMARY: +==1488710== definitely lost: 0 bytes in 0 blocks +==1488710== indirectly lost: 0 bytes in 0 blocks +==1488710== possibly lost: 0 bytes in 0 blocks +==1488710== still reachable: 24 bytes in 2 blocks +==1488710== suppressed: 995,049 bytes in 13,911 blocks +==1488710== Reachable blocks (those to which a pointer was found) are not shown. +==1488710== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488710== +==1488710== For lists of detected and suppressed errors, rerun with: -s +==1488710== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestGmshMeshReader_valgrind.txt b/log-files/2024-02-21_13-45-57/TestGmshMeshReader_valgrind.txt new file mode 100644 index 0000000000..96cbea927f --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestGmshMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==1489177== Memcheck, a memory error detector +==1489177== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489177== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489177== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestGmshMeshReader -malloc_debug -malloc_dump -memory_info +==1489177== Parent PID: 1488630 +==1489177== +==1489177== +==1489177== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489177== Open file descriptor 12: +==1489177== at 0x69AB07D: pipe (pipe.c:29) +==1489177== by 0xFD3507D: ??? +==1489177== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489177== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489177== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489177== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489177== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489177== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489177== by 0x1235DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489177== by 0x11EA0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489177== by 0x12152A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489177== by 0x1213CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489177== by 0x121A61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489177== by 0x11CE35: main (TestGmshMeshReader.cpp:19) +==1489177== +==1489177== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489177== at 0x69AFA1C: __open_nocancel (open64_nocancel.c:39) +==1489177== by 0x6933BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489177== by 0x61F7822: ??? +==1489177== by 0x61F796F: ??? +==1489177== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489177== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489177== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489177== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489177== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489177== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489177== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489177== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489177== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489177== by 0x1235DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489177== by 0x11EA0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489177== by 0x12152A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489177== by 0x1213CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489177== by 0x121A61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489177== by 0x11CE35: main (TestGmshMeshReader.cpp:19) +==1489177== +==1489177== Open file descriptor 115: +==1489177== +==1489177== +==1489177== Open file descriptor 112: +==1489177== +==1489177== +==1489177== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGmshMeshReader_valgrind.txt +==1489177== +==1489177== +==1489177== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489177== +==1489177== +==1489177== +==1489177== HEAP SUMMARY: +==1489177== in use at exit: 995,457 bytes in 13,913 blocks +==1489177== total heap usage: 63,209 allocs, 49,296 frees, 1,572,421,569 bytes allocated +==1489177== +==1489177== LEAK SUMMARY: +==1489177== definitely lost: 0 bytes in 0 blocks +==1489177== indirectly lost: 0 bytes in 0 blocks +==1489177== possibly lost: 0 bytes in 0 blocks +==1489177== still reachable: 24 bytes in 2 blocks +==1489177== suppressed: 995,433 bytes in 13,911 blocks +==1489177== Reachable blocks (those to which a pointer was found) are not shown. +==1489177== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489177== +==1489177== For lists of detected and suppressed errors, rerun with: -s +==1489177== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestGoldbeter1991OdeSystem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestGoldbeter1991OdeSystem_valgrind.txt new file mode 100644 index 0000000000..db01df928f --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestGoldbeter1991OdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==1490123== Memcheck, a memory error detector +==1490123== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490123== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490123== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestGoldbeter1991OdeSystem -malloc_debug -malloc_dump -memory_info +==1490123== Parent PID: 1488630 +==1490123== +==1490123== +==1490123== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490123== Open file descriptor 12: +==1490123== at 0xE69807D: pipe (pipe.c:29) +==1490123== by 0x18A1D07D: ??? +==1490123== by 0x12FC34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490123== by 0xE2E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490123== by 0xE27ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490123== by 0xCF75D38: PetscInitialize (pinit.c:924) +==1490123== by 0xCDE5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490123== by 0xCDE51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490123== by 0x124157: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490123== by 0x11F6A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490123== by 0x121BF4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490123== by 0x121AF0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490123== by 0x122103: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490123== by 0x11DEA5: main (TestGoldbeter1991OdeSystem.cpp:18) +==1490123== +==1490123== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490123== at 0xE69CA1C: __open_nocancel (open64_nocancel.c:39) +==1490123== by 0xE620BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490123== by 0xCE19822: ??? +==1490123== by 0xCE1996F: ??? +==1490123== by 0x130686DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490123== by 0x13068938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490123== by 0x1301E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490123== by 0x12FC32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490123== by 0xE2E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490123== by 0xE27ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490123== by 0xCF75D38: PetscInitialize (pinit.c:924) +==1490123== by 0xCDE5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490123== by 0xCDE51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490123== by 0x124157: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490123== by 0x11F6A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490123== by 0x121BF4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490123== by 0x121AF0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490123== by 0x122103: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490123== by 0x11DEA5: main (TestGoldbeter1991OdeSystem.cpp:18) +==1490123== +==1490123== Open file descriptor 115: +==1490123== +==1490123== +==1490123== Open file descriptor 112: +==1490123== +==1490123== +==1490123== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGoldbeter1991OdeSystem_valgrind.txt +==1490123== +==1490123== +==1490123== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490123== +==1490123== +==1490123== +==1490123== HEAP SUMMARY: +==1490123== in use at exit: 995,553 bytes in 13,913 blocks +==1490123== total heap usage: 75,338 allocs, 61,425 frees, 1,572,991,713 bytes allocated +==1490123== +==1490123== LEAK SUMMARY: +==1490123== definitely lost: 0 bytes in 0 blocks +==1490123== indirectly lost: 0 bytes in 0 blocks +==1490123== possibly lost: 0 bytes in 0 blocks +==1490123== still reachable: 24 bytes in 2 blocks +==1490123== suppressed: 995,529 bytes in 13,911 blocks +==1490123== Reachable blocks (those to which a pointer was found) are not shown. +==1490123== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490123== +==1490123== For lists of detected and suppressed errors, rerun with: -s +==1490123== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestHdf5Converters_valgrind.txt b/log-files/2024-02-21_13-45-57/TestHdf5Converters_valgrind.txt new file mode 100644 index 0000000000..1ba4937bf8 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestHdf5Converters_valgrind.txt @@ -0,0 +1,73 @@ +==1489634== Memcheck, a memory error detector +==1489634== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489634== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489634== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestHdf5Converters -malloc_debug -malloc_dump -memory_info +==1489634== Parent PID: 1488630 +==1489634== +==1489634== +==1489634== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489634== Open file descriptor 12: +==1489634== at 0x6FB507D: pipe (pipe.c:29) +==1489634== by 0x1014507D: ??? +==1489634== by 0xC2794CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489634== by 0x8A2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489634== by 0x89C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489634== by 0x7304D38: PetscInitialize (pinit.c:924) +==1489634== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489634== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489634== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489634== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489634== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489634== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489634== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489634== by 0x11B235: main (TestHdf5Converters.cpp:18) +==1489634== +==1489634== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489634== at 0x6FB9A1C: __open_nocancel (open64_nocancel.c:39) +==1489634== by 0x6F3DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489634== by 0x6596822: ??? +==1489634== by 0x659696F: ??? +==1489634== by 0xC31E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489634== by 0xC31E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489634== by 0xC2D4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489634== by 0xC2792DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489634== by 0x8A2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489634== by 0x89C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489634== by 0x7304D38: PetscInitialize (pinit.c:924) +==1489634== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489634== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489634== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489634== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489634== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489634== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489634== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489634== by 0x11B235: main (TestHdf5Converters.cpp:18) +==1489634== +==1489634== Open file descriptor 115: +==1489634== +==1489634== +==1489634== Open file descriptor 112: +==1489634== +==1489634== +==1489634== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5Converters_valgrind.txt +==1489634== +==1489634== +==1489634== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489634== +==1489634== +==1489634== +==1489634== HEAP SUMMARY: +==1489634== in use at exit: 995,489 bytes in 13,913 blocks +==1489634== total heap usage: 219,141 allocs, 205,228 frees, 1,627,959,453 bytes allocated +==1489634== +==1489634== LEAK SUMMARY: +==1489634== definitely lost: 0 bytes in 0 blocks +==1489634== indirectly lost: 0 bytes in 0 blocks +==1489634== possibly lost: 0 bytes in 0 blocks +==1489634== still reachable: 24 bytes in 2 blocks +==1489634== suppressed: 995,465 bytes in 13,911 blocks +==1489634== Reachable blocks (those to which a pointer was found) are not shown. +==1489634== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489634== +==1489634== For lists of detected and suppressed errors, rerun with: -s +==1489634== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestHdf5DataReader_valgrind.txt b/log-files/2024-02-21_13-45-57/TestHdf5DataReader_valgrind.txt new file mode 100644 index 0000000000..da27cc2fe7 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestHdf5DataReader_valgrind.txt @@ -0,0 +1,73 @@ +==1488858== Memcheck, a memory error detector +==1488858== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488858== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488858== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info +==1488858== Parent PID: 1488630 +==1488858== +==1488858== +==1488858== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488858== Open file descriptor 12: +==1488858== at 0x645C07D: pipe (pipe.c:29) +==1488858== by 0xAF1907D: ??? +==1488858== by 0x8F3E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488858== by 0x6657418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488858== by 0x65F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488858== by 0x4A95D38: PetscInitialize (pinit.c:924) +==1488858== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488858== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488858== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488858== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488858== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488858== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488858== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488858== by 0x1151B5: main (TestHdf5DataReader.cpp:19) +==1488858== +==1488858== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488858== at 0x6460A1C: __open_nocancel (open64_nocancel.c:39) +==1488858== by 0x63E4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488858== by 0x5D1F822: ??? +==1488858== by 0x5D1F96F: ??? +==1488858== by 0x8FE36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488858== by 0x8FE3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488858== by 0x8F99922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488858== by 0x8F3E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488858== by 0x6657418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488858== by 0x65F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488858== by 0x4A95D38: PetscInitialize (pinit.c:924) +==1488858== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488858== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488858== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488858== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488858== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488858== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488858== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488858== by 0x1151B5: main (TestHdf5DataReader.cpp:19) +==1488858== +==1488858== Open file descriptor 115: +==1488858== +==1488858== +==1488858== Open file descriptor 112: +==1488858== +==1488858== +==1488858== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt +==1488858== +==1488858== +==1488858== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488858== +==1488858== +==1488858== +==1488858== HEAP SUMMARY: +==1488858== in use at exit: 995,569 bytes in 13,923 blocks +==1488858== total heap usage: 71,182 allocs, 57,259 frees, 1,581,851,098 bytes allocated +==1488858== +==1488858== LEAK SUMMARY: +==1488858== definitely lost: 0 bytes in 0 blocks +==1488858== indirectly lost: 0 bytes in 0 blocks +==1488858== possibly lost: 0 bytes in 0 blocks +==1488858== still reachable: 24 bytes in 2 blocks +==1488858== suppressed: 995,545 bytes in 13,921 blocks +==1488858== Reachable blocks (those to which a pointer was found) are not shown. +==1488858== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488858== +==1488858== For lists of detected and suppressed errors, rerun with: -s +==1488858== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35) diff --git a/log-files/2024-02-21_13-45-57/TestHdf5DataWriter_valgrind.txt b/log-files/2024-02-21_13-45-57/TestHdf5DataWriter_valgrind.txt new file mode 100644 index 0000000000..51f8c28091 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestHdf5DataWriter_valgrind.txt @@ -0,0 +1,74 @@ +==1488868== Memcheck, a memory error detector +==1488868== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488868== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488868== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info +==1488868== Parent PID: 1488630 +==1488868== +==1488868== Warning: invalid file descriptor -1 in syscall close() +==1488868== +==1488868== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488868== Open file descriptor 12: +==1488868== at 0x659307D: pipe (pipe.c:29) +==1488868== by 0xAF1907D: ??? +==1488868== by 0x8F3E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488868== by 0x61E2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488868== by 0x617BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488868== by 0x4A95D38: PetscInitialize (pinit.c:924) +==1488868== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488868== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488868== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488868== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488868== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488868== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488868== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488868== by 0x115255: main (TestHdf5DataWriter.cpp:19) +==1488868== +==1488868== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488868== at 0x6597A1C: __open_nocancel (open64_nocancel.c:39) +==1488868== by 0x651BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488868== by 0x5D1F822: ??? +==1488868== by 0x5D1F96F: ??? +==1488868== by 0x8FE36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488868== by 0x8FE3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488868== by 0x8F99922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488868== by 0x8F3E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488868== by 0x61E2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488868== by 0x617BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488868== by 0x4A95D38: PetscInitialize (pinit.c:924) +==1488868== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488868== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488868== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488868== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488868== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488868== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488868== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488868== by 0x115255: main (TestHdf5DataWriter.cpp:19) +==1488868== +==1488868== Open file descriptor 115: +==1488868== +==1488868== +==1488868== Open file descriptor 112: +==1488868== +==1488868== +==1488868== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt +==1488868== +==1488868== +==1488868== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488868== +==1488868== +==1488868== +==1488868== HEAP SUMMARY: +==1488868== in use at exit: 995,569 bytes in 13,923 blocks +==1488868== total heap usage: 127,711 allocs, 113,788 frees, 1,645,854,449 bytes allocated +==1488868== +==1488868== LEAK SUMMARY: +==1488868== definitely lost: 0 bytes in 0 blocks +==1488868== indirectly lost: 0 bytes in 0 blocks +==1488868== possibly lost: 0 bytes in 0 blocks +==1488868== still reachable: 24 bytes in 2 blocks +==1488868== suppressed: 995,545 bytes in 13,921 blocks +==1488868== Reachable blocks (those to which a pointer was found) are not shown. +==1488868== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488868== +==1488868== For lists of detected and suppressed errors, rerun with: -s +==1488868== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35) diff --git a/log-files/2024-02-21_13-45-57/TestHdf5ToVisualizerConverters_valgrind.txt b/log-files/2024-02-21_13-45-57/TestHdf5ToVisualizerConverters_valgrind.txt new file mode 100644 index 0000000000..649bf94f77 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestHdf5ToVisualizerConverters_valgrind.txt @@ -0,0 +1,73 @@ +==1506833== Memcheck, a memory error detector +==1506833== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506833== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506833== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHdf5ToVisualizerConverters -malloc_debug -malloc_dump -memory_info +==1506833== Parent PID: 1488630 +==1506833== +==1506833== +==1506833== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506833== Open file descriptor 12: +==1506833== at 0xA51D07D: pipe (pipe.c:29) +==1506833== by 0x13F9607D: ??? +==1506833== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506833== by 0xBC16418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506833== by 0xBBAFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506833== by 0xA8A6D38: PetscInitialize (pinit.c:924) +==1506833== by 0x9E02153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506833== by 0x9E021A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506833== by 0x124324: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506833== by 0x11DB0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506833== by 0x120564: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506833== by 0x120404: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506833== by 0x120A9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506833== by 0x11BF35: main (TestHdf5ToVisualizerConverters.cpp:19) +==1506833== +==1506833== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506833== at 0xA521A1C: __open_nocancel (open64_nocancel.c:39) +==1506833== by 0xA4A5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506833== by 0x9E36822: ??? +==1506833== by 0x9E3696F: ??? +==1506833== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506833== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506833== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506833== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506833== by 0xBC16418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506833== by 0xBBAFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506833== by 0xA8A6D38: PetscInitialize (pinit.c:924) +==1506833== by 0x9E02153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506833== by 0x9E021A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506833== by 0x124324: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506833== by 0x11DB0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506833== by 0x120564: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506833== by 0x120404: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506833== by 0x120A9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506833== by 0x11BF35: main (TestHdf5ToVisualizerConverters.cpp:19) +==1506833== +==1506833== Open file descriptor 115: +==1506833== +==1506833== +==1506833== Open file descriptor 112: +==1506833== +==1506833== +==1506833== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5ToVisualizerConverters_valgrind.txt +==1506833== +==1506833== +==1506833== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506833== +==1506833== +==1506833== +==1506833== HEAP SUMMARY: +==1506833== in use at exit: 995,569 bytes in 13,913 blocks +==1506833== total heap usage: 135,539 allocs, 121,626 frees, 1,600,143,377 bytes allocated +==1506833== +==1506833== LEAK SUMMARY: +==1506833== definitely lost: 0 bytes in 0 blocks +==1506833== indirectly lost: 0 bytes in 0 blocks +==1506833== possibly lost: 0 bytes in 0 blocks +==1506833== still reachable: 24 bytes in 2 blocks +==1506833== suppressed: 995,545 bytes in 13,911 blocks +==1506833== Reachable blocks (those to which a pointer was found) are not shown. +==1506833== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506833== +==1506833== For lists of detected and suppressed errors, rerun with: -s +==1506833== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestHeartConfig_valgrind.txt b/log-files/2024-02-21_13-45-57/TestHeartConfig_valgrind.txt new file mode 100644 index 0000000000..535142137b --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestHeartConfig_valgrind.txt @@ -0,0 +1,73 @@ +==1507000== Memcheck, a memory error detector +==1507000== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1507000== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1507000== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartConfig -malloc_debug -malloc_dump -memory_info +==1507000== Parent PID: 1488630 +==1507000== +==1507000== +==1507000== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1507000== Open file descriptor 12: +==1507000== at 0xB70607D: pipe (pipe.c:29) +==1507000== by 0x13F9607D: ??? +==1507000== by 0xF7514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1507000== by 0xAFF4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1507000== by 0xAF8DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1507000== by 0x9C84D38: PetscInitialize (pinit.c:924) +==1507000== by 0x9AF4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1507000== by 0x9AF41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1507000== by 0x17E1E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1507000== by 0x175CFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1507000== by 0x179100: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1507000== by 0x178FA0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1507000== by 0x179637: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1507000== by 0x174125: main (TestHeartConfig.cpp:19) +==1507000== +==1507000== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1507000== at 0xB70AA1C: __open_nocancel (open64_nocancel.c:39) +==1507000== by 0xB68EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1507000== by 0x9B28822: ??? +==1507000== by 0x9B2896F: ??? +==1507000== by 0xF7F66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1507000== by 0xF7F6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1507000== by 0xF7AC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1507000== by 0xF7512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1507000== by 0xAFF4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1507000== by 0xAF8DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1507000== by 0x9C84D38: PetscInitialize (pinit.c:924) +==1507000== by 0x9AF4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1507000== by 0x9AF41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1507000== by 0x17E1E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1507000== by 0x175CFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1507000== by 0x179100: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1507000== by 0x178FA0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1507000== by 0x179637: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1507000== by 0x174125: main (TestHeartConfig.cpp:19) +==1507000== +==1507000== Open file descriptor 115: +==1507000== +==1507000== +==1507000== Open file descriptor 112: +==1507000== +==1507000== +==1507000== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartConfig_valgrind.txt +==1507000== +==1507000== +==1507000== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1507000== +==1507000== +==1507000== +==1507000== HEAP SUMMARY: +==1507000== in use at exit: 995,510 bytes in 13,909 blocks +==1507000== total heap usage: 2,332,832 allocs, 2,318,923 frees, 2,243,875,946 bytes allocated +==1507000== +==1507000== LEAK SUMMARY: +==1507000== definitely lost: 0 bytes in 0 blocks +==1507000== indirectly lost: 0 bytes in 0 blocks +==1507000== possibly lost: 0 bytes in 0 blocks +==1507000== still reachable: 24 bytes in 2 blocks +==1507000== suppressed: 995,486 bytes in 13,907 blocks +==1507000== Reachable blocks (those to which a pointer was found) are not shown. +==1507000== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1507000== +==1507000== For lists of detected and suppressed errors, rerun with: -s +==1507000== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestHeartEventHandler_valgrind.txt b/log-files/2024-02-21_13-45-57/TestHeartEventHandler_valgrind.txt new file mode 100644 index 0000000000..7c18aef5f4 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestHeartEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==1488711== Memcheck, a memory error detector +==1488711== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488711== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488711== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestHeartEventHandler -malloc_debug -malloc_dump -memory_info +==1488711== Parent PID: 1488630 +==1488711== +==1488711== +==1488711== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488711== Open file descriptor 12: +==1488711== at 0x4DED07D: pipe (pipe.c:29) +==1488711== by 0xAEA407D: ??? +==1488711== by 0x643C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488711== by 0x4A3A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488711== by 0x49D3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488711== by 0x5038D38: PetscInitialize (pinit.c:924) +==1488711== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488711== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488711== by 0x115454: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488711== by 0x11064D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488711== by 0x1134F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488711== by 0x113396: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488711== by 0x113A2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488711== by 0x10EA75: main (TestHeartEventHandler.cpp:19) +==1488711== +==1488711== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488711== at 0x4DF1A1C: __open_nocancel (open64_nocancel.c:39) +==1488711== by 0x4D75BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488711== by 0x492E822: ??? +==1488711== by 0x492E96F: ??? +==1488711== by 0x64E36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488711== by 0x64E3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488711== by 0x6499922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488711== by 0x643C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488711== by 0x4A3A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488711== by 0x49D3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488711== by 0x5038D38: PetscInitialize (pinit.c:924) +==1488711== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488711== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488711== by 0x115454: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488711== by 0x11064D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488711== by 0x1134F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488711== by 0x113396: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488711== by 0x113A2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488711== by 0x10EA75: main (TestHeartEventHandler.cpp:19) +==1488711== +==1488711== Open file descriptor 115: +==1488711== +==1488711== +==1488711== Open file descriptor 112: +==1488711== +==1488711== +==1488711== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartEventHandler_valgrind.txt +==1488711== +==1488711== +==1488711== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488711== +==1488711== +==1488711== +==1488711== HEAP SUMMARY: +==1488711== in use at exit: 995,073 bytes in 13,913 blocks +==1488711== total heap usage: 57,603 allocs, 43,690 frees, 1,571,241,991 bytes allocated +==1488711== +==1488711== LEAK SUMMARY: +==1488711== definitely lost: 0 bytes in 0 blocks +==1488711== indirectly lost: 0 bytes in 0 blocks +==1488711== possibly lost: 0 bytes in 0 blocks +==1488711== still reachable: 24 bytes in 2 blocks +==1488711== suppressed: 995,049 bytes in 13,911 blocks +==1488711== Reachable blocks (those to which a pointer was found) are not shown. +==1488711== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488711== +==1488711== For lists of detected and suppressed errors, rerun with: -s +==1488711== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestHeartFileFinder_valgrind.txt b/log-files/2024-02-21_13-45-57/TestHeartFileFinder_valgrind.txt new file mode 100644 index 0000000000..1b6759e4d9 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestHeartFileFinder_valgrind.txt @@ -0,0 +1,73 @@ +==1507001== Memcheck, a memory error detector +==1507001== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1507001== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1507001== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartFileFinder -malloc_debug -malloc_dump -memory_info +==1507001== Parent PID: 1488630 +==1507001== +==1507001== +==1507001== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1507001== Open file descriptor 12: +==1507001== at 0x857007D: pipe (pipe.c:29) +==1507001== by 0x13F9707D: ??? +==1507001== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1507001== by 0x9C6B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1507001== by 0x9C04D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1507001== by 0x88FBD38: PetscInitialize (pinit.c:924) +==1507001== by 0x819A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1507001== by 0x819A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1507001== by 0x11F18E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1507001== by 0x11A2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1507001== by 0x11C9B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1507001== by 0x11C8AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1507001== by 0x11CEBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1507001== by 0x118AB5: main (TestHeartFileFinder.cpp:18) +==1507001== +==1507001== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1507001== at 0x8574A1C: __open_nocancel (open64_nocancel.c:39) +==1507001== by 0x84F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1507001== by 0x81CE822: ??? +==1507001== by 0x81CE96F: ??? +==1507001== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1507001== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1507001== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1507001== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1507001== by 0x9C6B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1507001== by 0x9C04D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1507001== by 0x88FBD38: PetscInitialize (pinit.c:924) +==1507001== by 0x819A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1507001== by 0x819A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1507001== by 0x11F18E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1507001== by 0x11A2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1507001== by 0x11C9B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1507001== by 0x11C8AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1507001== by 0x11CEBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1507001== by 0x118AB5: main (TestHeartFileFinder.cpp:18) +==1507001== +==1507001== Open file descriptor 115: +==1507001== +==1507001== +==1507001== Open file descriptor 112: +==1507001== +==1507001== +==1507001== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartFileFinder_valgrind.txt +==1507001== +==1507001== +==1507001== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1507001== +==1507001== +==1507001== +==1507001== HEAP SUMMARY: +==1507001== in use at exit: 995,569 bytes in 13,913 blocks +==1507001== total heap usage: 61,469 allocs, 47,556 frees, 1,571,653,872 bytes allocated +==1507001== +==1507001== LEAK SUMMARY: +==1507001== definitely lost: 0 bytes in 0 blocks +==1507001== indirectly lost: 0 bytes in 0 blocks +==1507001== possibly lost: 0 bytes in 0 blocks +==1507001== still reachable: 24 bytes in 2 blocks +==1507001== suppressed: 995,545 bytes in 13,911 blocks +==1507001== Reachable blocks (those to which a pointer was found) are not shown. +==1507001== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1507001== +==1507001== For lists of detected and suppressed errors, rerun with: -s +==1507001== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestHeartGeometryInformation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestHeartGeometryInformation_valgrind.txt new file mode 100644 index 0000000000..501ef8e405 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestHeartGeometryInformation_valgrind.txt @@ -0,0 +1,73 @@ +==1507007== Memcheck, a memory error detector +==1507007== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1507007== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1507007== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartGeometryInformation -malloc_debug -malloc_dump -memory_info +==1507007== Parent PID: 1488630 +==1507007== +==1507007== +==1507007== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1507007== Open file descriptor 12: +==1507007== at 0xA17E07D: pipe (pipe.c:29) +==1507007== by 0x13F9607D: ??? +==1507007== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1507007== by 0xB879418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1507007== by 0xB812D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1507007== by 0xA509D38: PetscInitialize (pinit.c:924) +==1507007== by 0x9A65153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1507007== by 0x9A651A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1507007== by 0x11C60C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1507007== by 0x117A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1507007== by 0x11A4EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1507007== by 0x11A38E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1507007== by 0x11AA25: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1507007== by 0x115E75: main (TestHeartGeometryInformation.cpp:19) +==1507007== +==1507007== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1507007== at 0xA182A1C: __open_nocancel (open64_nocancel.c:39) +==1507007== by 0xA106BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1507007== by 0x9A99822: ??? +==1507007== by 0x9A9996F: ??? +==1507007== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1507007== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1507007== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1507007== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1507007== by 0xB879418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1507007== by 0xB812D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1507007== by 0xA509D38: PetscInitialize (pinit.c:924) +==1507007== by 0x9A65153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1507007== by 0x9A651A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1507007== by 0x11C60C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1507007== by 0x117A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1507007== by 0x11A4EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1507007== by 0x11A38E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1507007== by 0x11AA25: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1507007== by 0x115E75: main (TestHeartGeometryInformation.cpp:19) +==1507007== +==1507007== Open file descriptor 115: +==1507007== +==1507007== +==1507007== Open file descriptor 112: +==1507007== +==1507007== +==1507007== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartGeometryInformation_valgrind.txt +==1507007== +==1507007== +==1507007== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1507007== +==1507007== +==1507007== +==1507007== HEAP SUMMARY: +==1507007== in use at exit: 995,510 bytes in 13,909 blocks +==1507007== total heap usage: 2,718,434 allocs, 2,704,525 frees, 1,888,784,204 bytes allocated +==1507007== +==1507007== LEAK SUMMARY: +==1507007== definitely lost: 0 bytes in 0 blocks +==1507007== indirectly lost: 0 bytes in 0 blocks +==1507007== possibly lost: 0 bytes in 0 blocks +==1507007== still reachable: 24 bytes in 2 blocks +==1507007== suppressed: 995,486 bytes in 13,907 blocks +==1507007== Reachable blocks (those to which a pointer was found) are not shown. +==1507007== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1507007== +==1507007== For lists of detected and suppressed errors, rerun with: -s +==1507007== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestHeartRegionCodes_valgrind.txt b/log-files/2024-02-21_13-45-57/TestHeartRegionCodes_valgrind.txt new file mode 100644 index 0000000000..f726220456 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestHeartRegionCodes_valgrind.txt @@ -0,0 +1,36 @@ +==1507095== Memcheck, a memory error detector +==1507095== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1507095== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1507095== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartRegionCodes -malloc_debug -malloc_dump -memory_info +==1507095== Parent PID: 1488630 +==1507095== +==1507095== +==1507095== FILE DESCRIPTORS: 7 open (3 std) at exit. +==1507095== Open file descriptor 115: +==1507095== +==1507095== +==1507095== Open file descriptor 112: +==1507095== +==1507095== +==1507095== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartRegionCodes_valgrind.txt +==1507095== +==1507095== +==1507095== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1507095== +==1507095== +==1507095== +==1507095== HEAP SUMMARY: +==1507095== in use at exit: 24 bytes in 2 blocks +==1507095== total heap usage: 7,002 allocs, 7,000 frees, 717,645 bytes allocated +==1507095== +==1507095== LEAK SUMMARY: +==1507095== definitely lost: 0 bytes in 0 blocks +==1507095== indirectly lost: 0 bytes in 0 blocks +==1507095== possibly lost: 0 bytes in 0 blocks +==1507095== still reachable: 24 bytes in 2 blocks +==1507095== suppressed: 0 bytes in 0 blocks +==1507095== Reachable blocks (those to which a pointer was found) are not shown. +==1507095== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1507095== +==1507095== For lists of detected and suppressed errors, rerun with: -s +==1507095== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-02-21_13-45-57/TestHelloWorld_valgrind.txt b/log-files/2024-02-21_13-45-57/TestHelloWorld_valgrind.txt new file mode 100644 index 0000000000..e786109ac0 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestHelloWorld_valgrind.txt @@ -0,0 +1,73 @@ +==1488712== Memcheck, a memory error detector +==1488712== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488712== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488712== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestHelloWorld -malloc_debug -malloc_dump -memory_info +==1488712== Parent PID: 1488630 +==1488712== +==1488712== +==1488712== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488712== Open file descriptor 12: +==1488712== at 0x4CB407D: pipe (pipe.c:29) +==1488712== by 0xAEA607D: ??? +==1488712== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488712== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488712== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488712== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488712== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488712== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488712== by 0x110C3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488712== by 0x10CB53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488712== by 0x10ED04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488712== by 0x10EC00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488712== by 0x10F213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488712== by 0x10B355: main (TestHelloWorld.cpp:18) +==1488712== +==1488712== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488712== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==1488712== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488712== by 0x492E822: ??? +==1488712== by 0x492E96F: ??? +==1488712== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488712== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488712== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488712== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488712== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488712== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488712== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488712== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488712== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488712== by 0x110C3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488712== by 0x10CB53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488712== by 0x10ED04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488712== by 0x10EC00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488712== by 0x10F213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488712== by 0x10B355: main (TestHelloWorld.cpp:18) +==1488712== +==1488712== Open file descriptor 115: +==1488712== +==1488712== +==1488712== Open file descriptor 112: +==1488712== +==1488712== +==1488712== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHelloWorld_valgrind.txt +==1488712== +==1488712== +==1488712== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488712== +==1488712== +==1488712== +==1488712== HEAP SUMMARY: +==1488712== in use at exit: 995,073 bytes in 13,913 blocks +==1488712== total heap usage: 57,557 allocs, 43,644 frees, 1,571,236,988 bytes allocated +==1488712== +==1488712== LEAK SUMMARY: +==1488712== definitely lost: 0 bytes in 0 blocks +==1488712== indirectly lost: 0 bytes in 0 blocks +==1488712== possibly lost: 0 bytes in 0 blocks +==1488712== still reachable: 24 bytes in 2 blocks +==1488712== suppressed: 995,049 bytes in 13,911 blocks +==1488712== Reachable blocks (those to which a pointer was found) are not shown. +==1488712== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488712== +==1488712== For lists of detected and suppressed errors, rerun with: -s +==1488712== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestHeterogeneousConductivities_valgrind.txt b/log-files/2024-02-21_13-45-57/TestHeterogeneousConductivities_valgrind.txt new file mode 100644 index 0000000000..0a12fde44c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestHeterogeneousConductivities_valgrind.txt @@ -0,0 +1,73 @@ +==1507107== Memcheck, a memory error detector +==1507107== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1507107== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1507107== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeterogeneousConductivities -malloc_debug -malloc_dump -memory_info +==1507107== Parent PID: 1488630 +==1507107== +==1507107== +==1507107== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1507107== Open file descriptor 12: +==1507107== at 0xA45207D: pipe (pipe.c:29) +==1507107== by 0x13F9607D: ??? +==1507107== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1507107== by 0xBB4B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1507107== by 0xBAE4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1507107== by 0xA7DBD38: PetscInitialize (pinit.c:924) +==1507107== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1507107== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1507107== by 0x11BF54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1507107== by 0x1174B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1507107== by 0x119942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1507107== by 0x11983E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1507107== by 0x119E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1507107== by 0x115CB5: main (TestHeterogeneousConductivities.cpp:18) +==1507107== +==1507107== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1507107== at 0xA456A1C: __open_nocancel (open64_nocancel.c:39) +==1507107== by 0xA3DABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1507107== by 0x9D6B822: ??? +==1507107== by 0x9D6B96F: ??? +==1507107== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1507107== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1507107== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1507107== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1507107== by 0xBB4B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1507107== by 0xBAE4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1507107== by 0xA7DBD38: PetscInitialize (pinit.c:924) +==1507107== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1507107== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1507107== by 0x11BF54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1507107== by 0x1174B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1507107== by 0x119942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1507107== by 0x11983E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1507107== by 0x119E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1507107== by 0x115CB5: main (TestHeterogeneousConductivities.cpp:18) +==1507107== +==1507107== Open file descriptor 115: +==1507107== +==1507107== +==1507107== Open file descriptor 112: +==1507107== +==1507107== +==1507107== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeterogeneousConductivities_valgrind.txt +==1507107== +==1507107== +==1507107== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1507107== +==1507107== +==1507107== +==1507107== HEAP SUMMARY: +==1507107== in use at exit: 996,049 bytes in 13,923 blocks +==1507107== total heap usage: 213,980 allocs, 200,057 frees, 1,605,323,345 bytes allocated +==1507107== +==1507107== LEAK SUMMARY: +==1507107== definitely lost: 0 bytes in 0 blocks +==1507107== indirectly lost: 0 bytes in 0 blocks +==1507107== possibly lost: 0 bytes in 0 blocks +==1507107== still reachable: 24 bytes in 2 blocks +==1507107== suppressed: 996,025 bytes in 13,921 blocks +==1507107== Reachable blocks (those to which a pointer was found) are not shown. +==1507107== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1507107== +==1507107== For lists of detected and suppressed errors, rerun with: -s +==1507107== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 38) diff --git a/log-files/2024-02-21_13-45-57/TestHeun2IvpOdeSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestHeun2IvpOdeSolver_valgrind.txt new file mode 100644 index 0000000000..8b73c8a072 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestHeun2IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489447== Memcheck, a memory error detector +==1489447== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489447== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489447== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestHeun2IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==1489447== Parent PID: 1488630 +==1489447== +==1489447== +==1489447== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489447== Open file descriptor 12: +==1489447== at 0x503C07D: pipe (pipe.c:29) +==1489447== by 0xB1E807D: ??? +==1489447== by 0x8CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489447== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489447== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489447== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489447== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489447== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489447== by 0x128368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489447== by 0x1228FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489447== by 0x1253AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489447== by 0x12524F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489447== by 0x1258E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489447== by 0x11FEC5: main (TestHeun2IvpOdeSolver.cpp:19) +==1489447== +==1489447== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489447== at 0x5040A1C: __open_nocancel (open64_nocancel.c:39) +==1489447== by 0x4FC4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489447== by 0x4B71822: ??? +==1489447== by 0x4B7196F: ??? +==1489447== by 0x8D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489447== by 0x8D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489447== by 0x8D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489447== by 0x8CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489447== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489447== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489447== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489447== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489447== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489447== by 0x128368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489447== by 0x1228FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489447== by 0x1253AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489447== by 0x12524F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489447== by 0x1258E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489447== by 0x11FEC5: main (TestHeun2IvpOdeSolver.cpp:19) +==1489447== +==1489447== Open file descriptor 115: +==1489447== +==1489447== +==1489447== Open file descriptor 112: +==1489447== +==1489447== +==1489447== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeun2IvpOdeSolver_valgrind.txt +==1489447== +==1489447== +==1489447== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489447== +==1489447== +==1489447== +==1489447== HEAP SUMMARY: +==1489447== in use at exit: 995,137 bytes in 13,913 blocks +==1489447== total heap usage: 105,683 allocs, 91,770 frees, 1,572,324,339 bytes allocated +==1489447== +==1489447== LEAK SUMMARY: +==1489447== definitely lost: 0 bytes in 0 blocks +==1489447== indirectly lost: 0 bytes in 0 blocks +==1489447== possibly lost: 0 bytes in 0 blocks +==1489447== still reachable: 24 bytes in 2 blocks +==1489447== suppressed: 995,113 bytes in 13,911 blocks +==1489447== Reachable blocks (those to which a pointer was found) are not shown. +==1489447== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489447== +==1489447== For lists of detected and suppressed errors, rerun with: -s +==1489447== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt new file mode 100644 index 0000000000..645dad568e --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==1505569== Memcheck, a memory error detector +==1505569== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505569== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505569== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem -malloc_debug -malloc_dump -memory_info +==1505569== Parent PID: 1488630 +==1505569== +==1505569== +==1505569== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505569== Open file descriptor 12: +==1505569== at 0x857007D: pipe (pipe.c:29) +==1505569== by 0x13F9707D: ??? +==1505569== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505569== by 0x9C6B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505569== by 0x9C04D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505569== by 0x88FBD38: PetscInitialize (pinit.c:924) +==1505569== by 0x819A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505569== by 0x819A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505569== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505569== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505569== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505569== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505569== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505569== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) +==1505569== +==1505569== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505569== at 0x8574A1C: __open_nocancel (open64_nocancel.c:39) +==1505569== by 0x84F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505569== by 0x81CE822: ??? +==1505569== by 0x81CE96F: ??? +==1505569== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505569== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505569== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505569== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505569== by 0x9C6B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505569== by 0x9C04D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505569== by 0x88FBD38: PetscInitialize (pinit.c:924) +==1505569== by 0x819A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505569== by 0x819A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505569== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505569== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505569== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505569== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505569== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505569== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) +==1505569== +==1505569== Open file descriptor 115: +==1505569== +==1505569== +==1505569== Open file descriptor 112: +==1505569== +==1505569== +==1505569== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt +==1505569== +==1505569== +==1505569== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505569== +==1505569== +==1505569== +==1505569== HEAP SUMMARY: +==1505569== in use at exit: 995,569 bytes in 13,913 blocks +==1505569== total heap usage: 61,504 allocs, 47,591 frees, 1,571,598,710 bytes allocated +==1505569== +==1505569== LEAK SUMMARY: +==1505569== definitely lost: 0 bytes in 0 blocks +==1505569== indirectly lost: 0 bytes in 0 blocks +==1505569== possibly lost: 0 bytes in 0 blocks +==1505569== still reachable: 24 bytes in 2 blocks +==1505569== suppressed: 995,545 bytes in 13,911 blocks +==1505569== Reachable blocks (those to which a pointer was found) are not shown. +==1505569== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505569== +==1505569== For lists of detected and suppressed errors, rerun with: -s +==1505569== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestHoneycombMeshGenerator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 0000000000..432dfd997a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==1489140== Memcheck, a memory error detector +==1489140== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489140== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489140== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==1489140== Parent PID: 1488630 +==1489140== +==1489140== +==1489140== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489140== Open file descriptor 12: +==1489140== at 0x7E6007D: pipe (pipe.c:29) +==1489140== by 0xFD3507D: ??? +==1489140== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489140== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489140== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489140== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489140== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489140== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489140== by 0x11C6C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489140== by 0x11776D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489140== by 0x11A4A8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489140== by 0x11A348: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489140== by 0x11A9DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489140== by 0x115B95: main (TestHoneycombMeshGenerator.cpp:19) +==1489140== +==1489140== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489140== at 0x7E64A1C: __open_nocancel (open64_nocancel.c:39) +==1489140== by 0x7DE8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489140== by 0x7575822: ??? +==1489140== by 0x757596F: ??? +==1489140== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489140== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489140== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489140== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489140== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489140== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489140== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489140== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489140== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489140== by 0x11C6C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489140== by 0x11776D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489140== by 0x11A4A8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489140== by 0x11A348: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489140== by 0x11A9DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489140== by 0x115B95: main (TestHoneycombMeshGenerator.cpp:19) +==1489140== +==1489140== Open file descriptor 115: +==1489140== +==1489140== +==1489140== Open file descriptor 112: +==1489140== +==1489140== +==1489140== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHoneycombMeshGenerator_valgrind.txt +==1489140== +==1489140== +==1489140== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489140== +==1489140== +==1489140== +==1489140== HEAP SUMMARY: +==1489140== in use at exit: 998,009 bytes in 13,914 blocks +==1489140== total heap usage: 1,213,030 allocs, 1,199,116 frees, 1,612,095,871 bytes allocated +==1489140== +==1489140== LEAK SUMMARY: +==1489140== definitely lost: 0 bytes in 0 blocks +==1489140== indirectly lost: 0 bytes in 0 blocks +==1489140== possibly lost: 0 bytes in 0 blocks +==1489140== still reachable: 2,576 bytes in 3 blocks +==1489140== suppressed: 995,433 bytes in 13,911 blocks +==1489140== Reachable blocks (those to which a pointer was found) are not shown. +==1489140== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489140== +==1489140== For lists of detected and suppressed errors, rerun with: -s +==1489140== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 0000000000..81028119fb --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==1489259== Memcheck, a memory error detector +==1489259== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489259== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489259== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==1489259== Parent PID: 1488630 +==1489259== +==1489259== +==1489259== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489259== Open file descriptor 12: +==1489259== at 0x68C407D: pipe (pipe.c:29) +==1489259== by 0xFD3507D: ??? +==1489259== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489259== by 0x7F10418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489259== by 0x7EA9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489259== by 0x6BA0D38: PetscInitialize (pinit.c:924) +==1489259== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489259== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489259== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489259== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489259== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489259== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489259== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489259== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) +==1489259== +==1489259== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489259== at 0x68C8A1C: __open_nocancel (open64_nocancel.c:39) +==1489259== by 0x684CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489259== by 0x61F7822: ??? +==1489259== by 0x61F796F: ??? +==1489259== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489259== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489259== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489259== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489259== by 0x7F10418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489259== by 0x7EA9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489259== by 0x6BA0D38: PetscInitialize (pinit.c:924) +==1489259== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489259== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489259== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489259== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489259== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489259== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489259== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489259== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) +==1489259== +==1489259== Open file descriptor 115: +==1489259== +==1489259== +==1489259== Open file descriptor 112: +==1489259== +==1489259== +==1489259== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHoneycombVertexMeshGenerator_valgrind.txt +==1489259== +==1489259== +==1489259== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489259== +==1489259== +==1489259== +==1489259== HEAP SUMMARY: +==1489259== in use at exit: 995,457 bytes in 13,913 blocks +==1489259== total heap usage: 425,152 allocs, 411,239 frees, 1,590,712,884 bytes allocated +==1489259== +==1489259== LEAK SUMMARY: +==1489259== definitely lost: 0 bytes in 0 blocks +==1489259== indirectly lost: 0 bytes in 0 blocks +==1489259== possibly lost: 0 bytes in 0 blocks +==1489259== still reachable: 24 bytes in 2 blocks +==1489259== suppressed: 995,433 bytes in 13,911 blocks +==1489259== Reachable blocks (those to which a pointer was found) are not shown. +==1489259== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489259== +==1489259== For lists of detected and suppressed errors, rerun with: -s +==1489259== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestImpedancePostProcessor_valgrind.txt b/log-files/2024-02-21_13-45-57/TestImpedancePostProcessor_valgrind.txt new file mode 100644 index 0000000000..2d8a690562 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestImpedancePostProcessor_valgrind.txt @@ -0,0 +1,36 @@ +==1504759== Memcheck, a memory error detector +==1504759== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504759== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504759== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestImpedancePostProcessor -malloc_debug -malloc_dump -memory_info +==1504759== Parent PID: 1488630 +==1504759== +==1504759== +==1504759== FILE DESCRIPTORS: 7 open (3 std) at exit. +==1504759== Open file descriptor 115: +==1504759== +==1504759== +==1504759== Open file descriptor 112: +==1504759== +==1504759== +==1504759== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImpedancePostProcessor_valgrind.txt +==1504759== +==1504759== +==1504759== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504759== +==1504759== +==1504759== +==1504759== HEAP SUMMARY: +==1504759== in use at exit: 24 bytes in 2 blocks +==1504759== total heap usage: 5,592 allocs, 5,590 frees, 601,733 bytes allocated +==1504759== +==1504759== LEAK SUMMARY: +==1504759== definitely lost: 0 bytes in 0 blocks +==1504759== indirectly lost: 0 bytes in 0 blocks +==1504759== possibly lost: 0 bytes in 0 blocks +==1504759== still reachable: 24 bytes in 2 blocks +==1504759== suppressed: 0 bytes in 0 blocks +==1504759== Reachable blocks (those to which a pointer was found) are not shown. +==1504759== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504759== +==1504759== For lists of detected and suppressed errors, rerun with: -s +==1504759== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-02-21_13-45-57/TestImplicitCardiacMechanicsSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestImplicitCardiacMechanicsSolver_valgrind.txt new file mode 100644 index 0000000000..6d64bf4547 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestImplicitCardiacMechanicsSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1506439== Memcheck, a memory error detector +==1506439== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506439== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506439== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestImplicitCardiacMechanicsSolver -malloc_debug -malloc_dump -memory_info +==1506439== Parent PID: 1488630 +==1506439== +==1506439== +==1506439== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506439== Open file descriptor 12: +==1506439== at 0xBB9107D: pipe (pipe.c:29) +==1506439== by 0x13F9807D: ??? +==1506439== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506439== by 0xBD8E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506439== by 0xBD27D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506439== by 0xA139D38: PetscInitialize (pinit.c:924) +==1506439== by 0xA011153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506439== by 0xA0111A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506439== by 0x12D058: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506439== by 0x127F95: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506439== by 0x12ABEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506439== by 0x12AA8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506439== by 0x12B123: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506439== by 0x126275: main (TestImplicitCardiacMechanicsSolver.cpp:19) +==1506439== +==1506439== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506439== at 0xBB95A1C: __open_nocancel (open64_nocancel.c:39) +==1506439== by 0xBB19BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506439== by 0xB3C3822: ??? +==1506439== by 0xB3C396F: ??? +==1506439== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506439== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506439== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506439== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506439== by 0xBD8E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506439== by 0xBD27D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506439== by 0xA139D38: PetscInitialize (pinit.c:924) +==1506439== by 0xA011153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506439== by 0xA0111A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506439== by 0x12D058: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506439== by 0x127F95: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506439== by 0x12ABEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506439== by 0x12AA8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506439== by 0x12B123: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506439== by 0x126275: main (TestImplicitCardiacMechanicsSolver.cpp:19) +==1506439== +==1506439== Open file descriptor 115: +==1506439== +==1506439== +==1506439== Open file descriptor 112: +==1506439== +==1506439== +==1506439== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImplicitCardiacMechanicsSolver_valgrind.txt +==1506439== +==1506439== +==1506439== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506439== +==1506439== +==1506439== +==1506439== HEAP SUMMARY: +==1506439== in use at exit: 995,510 bytes in 13,909 blocks +==1506439== total heap usage: 1,361,672 allocs, 1,347,763 frees, 1,713,588,460 bytes allocated +==1506439== +==1506439== LEAK SUMMARY: +==1506439== definitely lost: 0 bytes in 0 blocks +==1506439== indirectly lost: 0 bytes in 0 blocks +==1506439== possibly lost: 0 bytes in 0 blocks +==1506439== still reachable: 24 bytes in 2 blocks +==1506439== suppressed: 995,486 bytes in 13,907 blocks +==1506439== Reachable blocks (those to which a pointer was found) are not shown. +==1506439== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506439== +==1506439== For lists of detected and suppressed errors, rerun with: -s +==1506439== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestIncompressibleNonlinearElasticitySolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestIncompressibleNonlinearElasticitySolver_valgrind.txt new file mode 100644 index 0000000000..7827662620 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestIncompressibleNonlinearElasticitySolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489694== Memcheck, a memory error detector +==1489694== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489694== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489694== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestIncompressibleNonlinearElasticitySolver -malloc_debug -malloc_dump -memory_info +==1489694== Parent PID: 1488630 +==1489694== +==1489694== +==1489694== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489694== Open file descriptor 12: +==1489694== at 0x807107D: pipe (pipe.c:29) +==1489694== by 0x102C507D: ??? +==1489694== by 0xBB8F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489694== by 0x7892418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489694== by 0x782BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489694== by 0x64FCD38: PetscInitialize (pinit.c:924) +==1489694== by 0x63D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489694== by 0x63D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489694== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489694== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489694== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489694== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489694== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489694== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) +==1489694== +==1489694== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489694== at 0x8075A1C: __open_nocancel (open64_nocancel.c:39) +==1489694== by 0x7FF9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489694== by 0x7786822: ??? +==1489694== by 0x778696F: ??? +==1489694== by 0xBC346DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489694== by 0xBC34938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489694== by 0xBBEA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489694== by 0xBB8F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489694== by 0x7892418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489694== by 0x782BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489694== by 0x64FCD38: PetscInitialize (pinit.c:924) +==1489694== by 0x63D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489694== by 0x63D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489694== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489694== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489694== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489694== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489694== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489694== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) +==1489694== +==1489694== Open file descriptor 115: +==1489694== +==1489694== +==1489694== Open file descriptor 112: +==1489694== +==1489694== +==1489694== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIncompressibleNonlinearElasticitySolver_valgrind.txt +==1489694== +==1489694== +==1489694== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489694== +==1489694== +==1489694== +==1489694== HEAP SUMMARY: +==1489694== in use at exit: 995,446 bytes in 13,909 blocks +==1489694== total heap usage: 650,903 allocs, 636,994 frees, 1,731,954,762 bytes allocated +==1489694== +==1489694== LEAK SUMMARY: +==1489694== definitely lost: 0 bytes in 0 blocks +==1489694== indirectly lost: 0 bytes in 0 blocks +==1489694== possibly lost: 0 bytes in 0 blocks +==1489694== still reachable: 24 bytes in 2 blocks +==1489694== suppressed: 995,422 bytes in 13,907 blocks +==1489694== Reachable blocks (those to which a pointer was found) are not shown. +==1489694== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489694== +==1489694== For lists of detected and suppressed errors, rerun with: -s +==1489694== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestIonicModelsWithSacs_valgrind.txt b/log-files/2024-02-21_13-45-57/TestIonicModelsWithSacs_valgrind.txt new file mode 100644 index 0000000000..49852f2cc4 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestIonicModelsWithSacs_valgrind.txt @@ -0,0 +1,73 @@ +==1505806== Memcheck, a memory error detector +==1505806== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505806== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505806== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestIonicModelsWithSacs -malloc_debug -malloc_dump -memory_info +==1505806== Parent PID: 1488630 +==1505806== +==1505806== +==1505806== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505806== Open file descriptor 12: +==1505806== at 0x9C6A07D: pipe (pipe.c:29) +==1505806== by 0x13F9707D: ??? +==1505806== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505806== by 0x989D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505806== by 0x9836D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505806== by 0x8507D38: PetscInitialize (pinit.c:924) +==1505806== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505806== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505806== by 0x11A0FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505806== by 0x1145B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505806== by 0x116CB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505806== by 0x116BAD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505806== by 0x1171C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505806== by 0x112DB5: main (TestIonicModelsWithSacs.cpp:18) +==1505806== +==1505806== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505806== at 0x9C6EA1C: __open_nocancel (open64_nocancel.c:39) +==1505806== by 0x9BF2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505806== by 0x9791822: ??? +==1505806== by 0x979196F: ??? +==1505806== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505806== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505806== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505806== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505806== by 0x989D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505806== by 0x9836D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505806== by 0x8507D38: PetscInitialize (pinit.c:924) +==1505806== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505806== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505806== by 0x11A0FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505806== by 0x1145B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505806== by 0x116CB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505806== by 0x116BAD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505806== by 0x1171C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505806== by 0x112DB5: main (TestIonicModelsWithSacs.cpp:18) +==1505806== +==1505806== Open file descriptor 115: +==1505806== +==1505806== +==1505806== Open file descriptor 112: +==1505806== +==1505806== +==1505806== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIonicModelsWithSacs_valgrind.txt +==1505806== +==1505806== +==1505806== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505806== +==1505806== +==1505806== +==1505806== HEAP SUMMARY: +==1505806== in use at exit: 995,569 bytes in 13,913 blocks +==1505806== total heap usage: 493,715 allocs, 479,802 frees, 1,675,432,046 bytes allocated +==1505806== +==1505806== LEAK SUMMARY: +==1505806== definitely lost: 0 bytes in 0 blocks +==1505806== indirectly lost: 0 bytes in 0 blocks +==1505806== possibly lost: 0 bytes in 0 blocks +==1505806== still reachable: 24 bytes in 2 blocks +==1505806== suppressed: 995,545 bytes in 13,911 blocks +==1505806== Reachable blocks (those to which a pointer was found) are not shown. +==1505806== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505806== +==1505806== For lists of detected and suppressed errors, rerun with: -s +==1505806== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestIonicModels_valgrind.txt b/log-files/2024-02-21_13-45-57/TestIonicModels_valgrind.txt new file mode 100644 index 0000000000..78fc95e62f --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestIonicModels_valgrind.txt @@ -0,0 +1,73 @@ +==1505645== Memcheck, a memory error detector +==1505645== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505645== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505645== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestIonicModels -malloc_debug -malloc_dump -memory_info +==1505645== Parent PID: 1488630 +==1505645== +==1505645== +==1505645== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505645== Open file descriptor 12: +==1505645== at 0x9D1F07D: pipe (pipe.c:29) +==1505645== by 0x13F9607D: ??? +==1505645== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505645== by 0x9952418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505645== by 0x98EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505645== by 0x85E2D38: PetscInitialize (pinit.c:924) +==1505645== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505645== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505645== by 0x1365FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505645== by 0x130B0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505645== by 0x133AAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505645== by 0x13394E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505645== by 0x133FE5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505645== by 0x12BDA5: main (TestIonicModels.cpp:19) +==1505645== +==1505645== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505645== at 0x9D23A1C: __open_nocancel (open64_nocancel.c:39) +==1505645== by 0x9CA7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505645== by 0x8486822: ??? +==1505645== by 0x848696F: ??? +==1505645== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505645== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505645== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505645== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505645== by 0x9952418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505645== by 0x98EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505645== by 0x85E2D38: PetscInitialize (pinit.c:924) +==1505645== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505645== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505645== by 0x1365FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505645== by 0x130B0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505645== by 0x133AAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505645== by 0x13394E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505645== by 0x133FE5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505645== by 0x12BDA5: main (TestIonicModels.cpp:19) +==1505645== +==1505645== Open file descriptor 115: +==1505645== +==1505645== +==1505645== Open file descriptor 112: +==1505645== +==1505645== +==1505645== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIonicModels_valgrind.txt +==1505645== +==1505645== +==1505645== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505645== +==1505645== +==1505645== +==1505645== HEAP SUMMARY: +==1505645== in use at exit: 997,326 bytes in 13,913 blocks +==1505645== total heap usage: 1,905,430 allocs, 1,891,517 frees, 3,303,101,828 bytes allocated +==1505645== +==1505645== LEAK SUMMARY: +==1505645== definitely lost: 0 bytes in 0 blocks +==1505645== indirectly lost: 0 bytes in 0 blocks +==1505645== possibly lost: 0 bytes in 0 blocks +==1505645== still reachable: 1,840 bytes in 6 blocks +==1505645== suppressed: 995,486 bytes in 13,907 blocks +==1505645== Reachable blocks (those to which a pointer was found) are not shown. +==1505645== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505645== +==1505645== For lists of detected and suppressed errors, rerun with: -s +==1505645== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestLinearBasisFunction_valgrind.txt b/log-files/2024-02-21_13-45-57/TestLinearBasisFunction_valgrind.txt new file mode 100644 index 0000000000..19730a7d56 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestLinearBasisFunction_valgrind.txt @@ -0,0 +1,73 @@ +==1489639== Memcheck, a memory error detector +==1489639== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489639== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489639== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearBasisFunction -malloc_debug -malloc_dump -memory_info +==1489639== Parent PID: 1488630 +==1489639== +==1489639== +==1489639== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489639== Open file descriptor 12: +==1489639== at 0x691C07D: pipe (pipe.c:29) +==1489639== by 0x1014507D: ??? +==1489639== by 0xBF8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489639== by 0x8390418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489639== by 0x8329D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489639== by 0x6C6BD38: PetscInitialize (pinit.c:924) +==1489639== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489639== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489639== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489639== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489639== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489639== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489639== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489639== by 0x11B875: main (TestLinearBasisFunction.cpp:18) +==1489639== +==1489639== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489639== at 0x6920A1C: __open_nocancel (open64_nocancel.c:39) +==1489639== by 0x68A4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489639== by 0x6596822: ??? +==1489639== by 0x659696F: ??? +==1489639== by 0xC0346DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489639== by 0xC034938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489639== by 0xBFEA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489639== by 0xBF8D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489639== by 0x8390418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489639== by 0x8329D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489639== by 0x6C6BD38: PetscInitialize (pinit.c:924) +==1489639== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489639== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489639== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489639== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489639== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489639== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489639== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489639== by 0x11B875: main (TestLinearBasisFunction.cpp:18) +==1489639== +==1489639== Open file descriptor 115: +==1489639== +==1489639== +==1489639== Open file descriptor 112: +==1489639== +==1489639== +==1489639== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearBasisFunction_valgrind.txt +==1489639== +==1489639== +==1489639== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489639== +==1489639== +==1489639== +==1489639== HEAP SUMMARY: +==1489639== in use at exit: 995,489 bytes in 13,913 blocks +==1489639== total heap usage: 59,855 allocs, 45,942 frees, 1,571,449,744 bytes allocated +==1489639== +==1489639== LEAK SUMMARY: +==1489639== definitely lost: 0 bytes in 0 blocks +==1489639== indirectly lost: 0 bytes in 0 blocks +==1489639== possibly lost: 0 bytes in 0 blocks +==1489639== still reachable: 24 bytes in 2 blocks +==1489639== suppressed: 995,465 bytes in 13,911 blocks +==1489639== Reachable blocks (those to which a pointer was found) are not shown. +==1489639== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489639== +==1489639== For lists of detected and suppressed errors, rerun with: -s +==1489639== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt new file mode 100644 index 0000000000..35f1a582b9 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==1489490== Memcheck, a memory error detector +==1489490== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489490== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489490== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearParabolicPdeSystemForCoupledOdeSystem -malloc_debug -malloc_dump -memory_info +==1489490== Parent PID: 1488630 +==1489490== +==1489490== +==1489490== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489490== Open file descriptor 12: +==1489490== at 0x7A3407D: pipe (pipe.c:29) +==1489490== by 0xFD3207D: ??? +==1489490== by 0xB6794CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489490== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489490== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489490== by 0x62EDD38: PetscInitialize (pinit.c:924) +==1489490== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489490== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489490== by 0x1173E3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489490== by 0x112E53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489490== by 0x11519C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489490== by 0x115097: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489490== by 0x1156AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489490== by 0x111655: main (TestLinearParabolicPdeSystemForCoupledOdeSystem.cpp:18) +==1489490== +==1489490== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489490== at 0x7A38A1C: __open_nocancel (open64_nocancel.c:39) +==1489490== by 0x79BCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489490== by 0x7577822: ??? +==1489490== by 0x757796F: ??? +==1489490== by 0xB71E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489490== by 0xB71E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489490== by 0xB6D4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489490== by 0xB6792DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489490== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489490== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489490== by 0x62EDD38: PetscInitialize (pinit.c:924) +==1489490== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489490== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489490== by 0x1173E3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489490== by 0x112E53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489490== by 0x11519C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489490== by 0x115097: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489490== by 0x1156AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489490== by 0x111655: main (TestLinearParabolicPdeSystemForCoupledOdeSystem.cpp:18) +==1489490== +==1489490== Open file descriptor 115: +==1489490== +==1489490== +==1489490== Open file descriptor 112: +==1489490== +==1489490== +==1489490== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt +==1489490== +==1489490== +==1489490== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489490== +==1489490== +==1489490== +==1489490== HEAP SUMMARY: +==1489490== in use at exit: 995,457 bytes in 13,913 blocks +==1489490== total heap usage: 59,807 allocs, 45,894 frees, 1,571,444,861 bytes allocated +==1489490== +==1489490== LEAK SUMMARY: +==1489490== definitely lost: 0 bytes in 0 blocks +==1489490== indirectly lost: 0 bytes in 0 blocks +==1489490== possibly lost: 0 bytes in 0 blocks +==1489490== still reachable: 24 bytes in 2 blocks +==1489490== suppressed: 995,433 bytes in 13,911 blocks +==1489490== Reachable blocks (those to which a pointer was found) are not shown. +==1489490== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489490== +==1489490== For lists of detected and suppressed errors, rerun with: -s +==1489490== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt new file mode 100644 index 0000000000..d38c369c93 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489491== Memcheck, a memory error detector +==1489491== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489491== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489491== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver -malloc_debug -malloc_dump -memory_info +==1489491== Parent PID: 1488630 +==1489491== +==1489491== +==1489491== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489491== Open file descriptor 12: +==1489491== at 0x842707D: pipe (pipe.c:29) +==1489491== by 0x1047607D: ??? +==1489491== by 0xC28C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489491== by 0x8A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489491== by 0x89B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489491== by 0x69CFD38: PetscInitialize (pinit.c:924) +==1489491== by 0x68A7153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489491== by 0x68A71A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489491== by 0x199CB4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489491== by 0x191511: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489491== by 0x1949B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489491== by 0x194858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489491== by 0x194EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489491== by 0x18F635: main (TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver.cpp:19) +==1489491== +==1489491== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489491== at 0x842BA1C: __open_nocancel (open64_nocancel.c:39) +==1489491== by 0x83AFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489491== by 0x7C59822: ??? +==1489491== by 0x7C5996F: ??? +==1489491== by 0xC3316DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489491== by 0xC331938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489491== by 0xC2E7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489491== by 0xC28C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489491== by 0x8A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489491== by 0x89B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489491== by 0x69CFD38: PetscInitialize (pinit.c:924) +==1489491== by 0x68A7153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489491== by 0x68A71A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489491== by 0x199CB4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489491== by 0x191511: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489491== by 0x1949B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489491== by 0x194858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489491== by 0x194EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489491== by 0x18F635: main (TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver.cpp:19) +==1489491== +==1489491== Open file descriptor 115: +==1489491== +==1489491== +==1489491== Open file descriptor 112: +==1489491== +==1489491== +==1489491== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt +==1489491== +==1489491== +==1489491== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489491== +==1489491== +==1489491== +==1489491== HEAP SUMMARY: +==1489491== in use at exit: 998,030 bytes in 13,910 blocks +==1489491== total heap usage: 2,566,865 allocs, 2,552,955 frees, 1,810,475,819 bytes allocated +==1489491== +==1489491== LEAK SUMMARY: +==1489491== definitely lost: 0 bytes in 0 blocks +==1489491== indirectly lost: 0 bytes in 0 blocks +==1489491== possibly lost: 0 bytes in 0 blocks +==1489491== still reachable: 2,576 bytes in 3 blocks +==1489491== suppressed: 995,454 bytes in 13,907 blocks +==1489491== Reachable blocks (those to which a pointer was found) are not shown. +==1489491== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489491== +==1489491== For lists of detected and suppressed errors, rerun with: -s +==1489491== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2024-02-21_13-45-57/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt b/log-files/2024-02-21_13-45-57/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt new file mode 100644 index 0000000000..4709afb447 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt @@ -0,0 +1,73 @@ +==1504257== Memcheck, a memory error detector +==1504257== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504257== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504257== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestLinearSpringWithVariableSpringConstantsForce -malloc_debug -malloc_dump -memory_info +==1504257== Parent PID: 1488630 +==1504257== +==1504257== +==1504257== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504257== Open file descriptor 12: +==1504257== at 0x1055507D: pipe (pipe.c:29) +==1504257== by 0x1A6DF07D: ??? +==1504257== by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504257== by 0x121B2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504257== by 0x1214BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504257== by 0x10E42D38: PetscInitialize (pinit.c:924) +==1504257== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504257== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504257== by 0x165A7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504257== by 0x15DE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504257== by 0x160FB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504257== by 0x160E58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504257== by 0x1614EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504257== by 0x15C295: main (TestLinearSpringWithVariableSpringConstantsForce.cpp:19) +==1504257== +==1504257== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504257== at 0x10559A1C: __open_nocancel (open64_nocancel.c:39) +==1504257== by 0x104DDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504257== by 0xFD5F822: ??? +==1504257== by 0xFD5F96F: ??? +==1504257== by 0x159956DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504257== by 0x15995938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504257== by 0x1594B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504257== by 0x158F02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504257== by 0x121B2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504257== by 0x1214BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504257== by 0x10E42D38: PetscInitialize (pinit.c:924) +==1504257== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504257== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504257== by 0x165A7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504257== by 0x15DE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504257== by 0x160FB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504257== by 0x160E58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504257== by 0x1614EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504257== by 0x15C295: main (TestLinearSpringWithVariableSpringConstantsForce.cpp:19) +==1504257== +==1504257== Open file descriptor 115: +==1504257== +==1504257== +==1504257== Open file descriptor 112: +==1504257== +==1504257== +==1504257== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt +==1504257== +==1504257== +==1504257== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504257== +==1504257== +==1504257== +==1504257== HEAP SUMMARY: +==1504257== in use at exit: 995,601 bytes in 13,914 blocks +==1504257== total heap usage: 567,762 allocs, 553,848 frees, 1,616,954,816 bytes allocated +==1504257== +==1504257== LEAK SUMMARY: +==1504257== definitely lost: 0 bytes in 0 blocks +==1504257== indirectly lost: 0 bytes in 0 blocks +==1504257== possibly lost: 0 bytes in 0 blocks +==1504257== still reachable: 56 bytes in 3 blocks +==1504257== suppressed: 995,545 bytes in 13,911 blocks +==1504257== Reachable blocks (those to which a pointer was found) are not shown. +==1504257== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504257== +==1504257== For lists of detected and suppressed errors, rerun with: -s +==1504257== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestLinearSystem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestLinearSystem_valgrind.txt new file mode 100644 index 0000000000..8054dbfe83 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestLinearSystem_valgrind.txt @@ -0,0 +1,73 @@ +==1488929== Memcheck, a memory error detector +==1488929== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488929== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488929== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestLinearSystem -malloc_debug -malloc_dump -memory_info +==1488929== Parent PID: 1488630 +==1488929== +==1488929== +==1488929== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488929== Open file descriptor 12: +==1488929== at 0x610507D: pipe (pipe.c:29) +==1488929== by 0xAF3A07D: ??? +==1488929== by 0x8A4D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488929== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488929== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488929== by 0x4B1BD38: PetscInitialize (pinit.c:924) +==1488929== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488929== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488929== by 0x135370: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488929== by 0x12FAC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488929== by 0x132BF0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488929== by 0x132A90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488929== by 0x133127: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488929== by 0x12DEE5: main (TestLinearSystem.cpp:19) +==1488929== +==1488929== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488929== at 0x6109A1C: __open_nocancel (open64_nocancel.c:39) +==1488929== by 0x608DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488929== by 0x49BD822: ??? +==1488929== by 0x49BD96F: ??? +==1488929== by 0x8AF46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488929== by 0x8AF4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488929== by 0x8AAA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488929== by 0x8A4D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488929== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488929== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488929== by 0x4B1BD38: PetscInitialize (pinit.c:924) +==1488929== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488929== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488929== by 0x135370: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488929== by 0x12FAC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488929== by 0x132BF0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488929== by 0x132A90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488929== by 0x133127: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488929== by 0x12DEE5: main (TestLinearSystem.cpp:19) +==1488929== +==1488929== Open file descriptor 115: +==1488929== +==1488929== +==1488929== Open file descriptor 112: +==1488929== +==1488929== +==1488929== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearSystem_valgrind.txt +==1488929== +==1488929== +==1488929== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488929== +==1488929== +==1488929== +==1488929== HEAP SUMMARY: +==1488929== in use at exit: 995,105 bytes in 13,914 blocks +==1488929== total heap usage: 72,604 allocs, 58,690 frees, 1,607,936,747 bytes allocated +==1488929== +==1488929== LEAK SUMMARY: +==1488929== definitely lost: 0 bytes in 0 blocks +==1488929== indirectly lost: 0 bytes in 0 blocks +==1488929== possibly lost: 0 bytes in 0 blocks +==1488929== still reachable: 40 bytes in 3 blocks +==1488929== suppressed: 995,065 bytes in 13,911 blocks +==1488929== Reachable blocks (those to which a pointer was found) are not shown. +==1488929== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488929== +==1488929== For lists of detected and suppressed errors, rerun with: -s +==1488929== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestLobePropertiesCalculator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestLobePropertiesCalculator_valgrind.txt new file mode 100644 index 0000000000..1e02df8e60 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestLobePropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==1504816== Memcheck, a memory error detector +==1504816== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504816== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504816== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestLobePropertiesCalculator -malloc_debug -malloc_dump -memory_info +==1504816== Parent PID: 1488630 +==1504816== +==1504816== +==1504816== FILE DESCRIPTORS: 7 open (3 std) at exit. +==1504816== Open file descriptor 115: +==1504816== +==1504816== +==1504816== Open file descriptor 112: +==1504816== +==1504816== +==1504816== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLobePropertiesCalculator_valgrind.txt +==1504816== +==1504816== +==1504816== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504816== +==1504816== +==1504816== +==1504816== HEAP SUMMARY: +==1504816== in use at exit: 24 bytes in 2 blocks +==1504816== total heap usage: 134,266 allocs, 134,264 frees, 48,961,220 bytes allocated +==1504816== +==1504816== LEAK SUMMARY: +==1504816== definitely lost: 0 bytes in 0 blocks +==1504816== indirectly lost: 0 bytes in 0 blocks +==1504816== possibly lost: 0 bytes in 0 blocks +==1504816== still reachable: 24 bytes in 2 blocks +==1504816== suppressed: 0 bytes in 0 blocks +==1504816== Reachable blocks (those to which a pointer was found) are not shown. +==1504816== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504816== +==1504816== For lists of detected and suppressed errors, rerun with: -s +==1504816== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-02-21_13-45-57/TestLogFile_valgrind.txt b/log-files/2024-02-21_13-45-57/TestLogFile_valgrind.txt new file mode 100644 index 0000000000..2467f80298 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestLogFile_valgrind.txt @@ -0,0 +1,73 @@ +==1488713== Memcheck, a memory error detector +==1488713== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488713== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488713== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestLogFile -malloc_debug -malloc_dump -memory_info +==1488713== Parent PID: 1488630 +==1488713== +==1488713== +==1488713== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488713== Open file descriptor 12: +==1488713== at 0x616B07D: pipe (pipe.c:29) +==1488713== by 0xAEA607D: ??? +==1488713== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488713== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488713== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488713== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488713== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488713== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488713== by 0x11A18F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488713== by 0x11398D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488713== by 0x116442: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488713== by 0x1162E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488713== by 0x116979: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488713== by 0x111DB5: main (TestLogFile.cpp:19) +==1488713== +==1488713== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488713== at 0x616FA1C: __open_nocancel (open64_nocancel.c:39) +==1488713== by 0x60F3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488713== by 0x5CAC822: ??? +==1488713== by 0x5CAC96F: ??? +==1488713== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488713== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488713== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488713== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488713== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488713== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488713== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488713== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488713== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488713== by 0x11A18F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488713== by 0x11398D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488713== by 0x116442: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488713== by 0x1162E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488713== by 0x116979: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488713== by 0x111DB5: main (TestLogFile.cpp:19) +==1488713== +==1488713== Open file descriptor 115: +==1488713== +==1488713== +==1488713== Open file descriptor 112: +==1488713== +==1488713== +==1488713== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLogFile_valgrind.txt +==1488713== +==1488713== +==1488713== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488713== +==1488713== +==1488713== +==1488713== HEAP SUMMARY: +==1488713== in use at exit: 995,073 bytes in 13,913 blocks +==1488713== total heap usage: 57,885 allocs, 43,972 frees, 1,571,483,505 bytes allocated +==1488713== +==1488713== LEAK SUMMARY: +==1488713== definitely lost: 0 bytes in 0 blocks +==1488713== indirectly lost: 0 bytes in 0 blocks +==1488713== possibly lost: 0 bytes in 0 blocks +==1488713== still reachable: 24 bytes in 2 blocks +==1488713== suppressed: 995,049 bytes in 13,911 blocks +==1488713== Reachable blocks (those to which a pointer was found) are not shown. +==1488713== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488713== +==1488713== For lists of detected and suppressed errors, rerun with: -s +==1488713== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-02-21_13-45-57/TestMajorAirwaysCentreLinesCleaner_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMajorAirwaysCentreLinesCleaner_valgrind.txt new file mode 100644 index 0000000000..64a5bbec5d --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMajorAirwaysCentreLinesCleaner_valgrind.txt @@ -0,0 +1,73 @@ +==1504880== Memcheck, a memory error detector +==1504880== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504880== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504880== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMajorAirwaysCentreLinesCleaner -malloc_debug -malloc_dump -memory_info +==1504880== Parent PID: 1488630 +==1504880== +==1504880== +==1504880== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504880== Open file descriptor 12: +==1504880== at 0x7E9907D: pipe (pipe.c:29) +==1504880== by 0x1041407D: ??? +==1504880== by 0xBC3C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504880== by 0x77A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504880== by 0x773AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504880== by 0x640BD38: PetscInitialize (pinit.c:924) +==1504880== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504880== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504880== by 0x11675D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504880== by 0x1121F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504880== by 0x1146F0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504880== by 0x1145EB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504880== by 0x114BFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504880== by 0x1109F5: main (TestMajorAirwaysCentreLinesCleaner.cpp:18) +==1504880== +==1504880== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504880== at 0x7E9DA1C: __open_nocancel (open64_nocancel.c:39) +==1504880== by 0x7E21BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504880== by 0x7695822: ??? +==1504880== by 0x769596F: ??? +==1504880== by 0xBCE16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504880== by 0xBCE1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504880== by 0xBC97922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504880== by 0xBC3C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504880== by 0x77A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504880== by 0x773AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504880== by 0x640BD38: PetscInitialize (pinit.c:924) +==1504880== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504880== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504880== by 0x11675D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504880== by 0x1121F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504880== by 0x1146F0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504880== by 0x1145EB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504880== by 0x114BFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504880== by 0x1109F5: main (TestMajorAirwaysCentreLinesCleaner.cpp:18) +==1504880== +==1504880== Open file descriptor 115: +==1504880== +==1504880== +==1504880== Open file descriptor 112: +==1504880== +==1504880== +==1504880== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMajorAirwaysCentreLinesCleaner_valgrind.txt +==1504880== +==1504880== +==1504880== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504880== +==1504880== +==1504880== +==1504880== HEAP SUMMARY: +==1504880== in use at exit: 995,553 bytes in 13,913 blocks +==1504880== total heap usage: 505,844 allocs, 491,931 frees, 1,590,312,894 bytes allocated +==1504880== +==1504880== LEAK SUMMARY: +==1504880== definitely lost: 0 bytes in 0 blocks +==1504880== indirectly lost: 0 bytes in 0 blocks +==1504880== possibly lost: 0 bytes in 0 blocks +==1504880== still reachable: 24 bytes in 2 blocks +==1504880== suppressed: 995,529 bytes in 13,911 blocks +==1504880== Reachable blocks (those to which a pointer was found) are not shown. +==1504880== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504880== +==1504880== For lists of detected and suppressed errors, rerun with: -s +==1504880== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestMaterialLaws_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMaterialLaws_valgrind.txt new file mode 100644 index 0000000000..6e9b987c06 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMaterialLaws_valgrind.txt @@ -0,0 +1,73 @@ +==1489707== Memcheck, a memory error detector +==1489707== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489707== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489707== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMaterialLaws -malloc_debug -malloc_dump -memory_info +==1489707== Parent PID: 1488630 +==1489707== +==1489707== +==1489707== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489707== Open file descriptor 12: +==1489707== at 0x4F1D07D: pipe (pipe.c:29) +==1489707== by 0x102C707D: ??? +==1489707== by 0xBC514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489707== by 0x8516418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489707== by 0x84AFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489707== by 0x6E1DD38: PetscInitialize (pinit.c:924) +==1489707== by 0x4A7A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489707== by 0x4A7A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489707== by 0x12ADEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489707== by 0x125E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489707== by 0x128AB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489707== by 0x128952: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489707== by 0x128FE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489707== by 0x124255: main (TestMaterialLaws.cpp:19) +==1489707== +==1489707== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489707== at 0x4F21A1C: __open_nocancel (open64_nocancel.c:39) +==1489707== by 0x4EA5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489707== by 0x4AAE822: ??? +==1489707== by 0x4AAE96F: ??? +==1489707== by 0xBCF66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489707== by 0xBCF6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489707== by 0xBCAC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489707== by 0xBC512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489707== by 0x8516418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489707== by 0x84AFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489707== by 0x6E1DD38: PetscInitialize (pinit.c:924) +==1489707== by 0x4A7A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489707== by 0x4A7A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489707== by 0x12ADEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489707== by 0x125E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489707== by 0x128AB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489707== by 0x128952: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489707== by 0x128FE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489707== by 0x124255: main (TestMaterialLaws.cpp:19) +==1489707== +==1489707== Open file descriptor 115: +==1489707== +==1489707== +==1489707== Open file descriptor 112: +==1489707== +==1489707== +==1489707== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMaterialLaws_valgrind.txt +==1489707== +==1489707== +==1489707== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489707== +==1489707== +==1489707== +==1489707== HEAP SUMMARY: +==1489707== in use at exit: 995,505 bytes in 13,913 blocks +==1489707== total heap usage: 60,253 allocs, 46,340 frees, 1,571,493,854 bytes allocated +==1489707== +==1489707== LEAK SUMMARY: +==1489707== definitely lost: 0 bytes in 0 blocks +==1489707== indirectly lost: 0 bytes in 0 blocks +==1489707== possibly lost: 0 bytes in 0 blocks +==1489707== still reachable: 24 bytes in 2 blocks +==1489707== suppressed: 995,481 bytes in 13,911 blocks +==1489707== Reachable blocks (those to which a pointer was found) are not shown. +==1489707== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489707== +==1489707== For lists of detected and suppressed errors, rerun with: -s +==1489707== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestMathsCustomFunctions_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMathsCustomFunctions_valgrind.txt new file mode 100644 index 0000000000..268a79001a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMathsCustomFunctions_valgrind.txt @@ -0,0 +1,73 @@ +==1488778== Memcheck, a memory error detector +==1488778== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488778== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488778== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestMathsCustomFunctions -malloc_debug -malloc_dump -memory_info +==1488778== Parent PID: 1488630 +==1488778== +==1488778== +==1488778== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488778== Open file descriptor 12: +==1488778== at 0x4D9D07D: pipe (pipe.c:29) +==1488778== by 0xAEA607D: ??? +==1488778== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488778== by 0x6358418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488778== by 0x62F1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488778== by 0x4FE8D38: PetscInitialize (pinit.c:924) +==1488778== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488778== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488778== by 0x1121CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488778== by 0x10DD13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488778== by 0x110294: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488778== by 0x11018F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488778== by 0x1107A3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488778== by 0x10C515: main (TestMathsCustomFunctions.cpp:18) +==1488778== +==1488778== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488778== at 0x4DA1A1C: __open_nocancel (open64_nocancel.c:39) +==1488778== by 0x4D25BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488778== by 0x492E822: ??? +==1488778== by 0x492E96F: ??? +==1488778== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488778== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488778== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488778== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488778== by 0x6358418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488778== by 0x62F1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488778== by 0x4FE8D38: PetscInitialize (pinit.c:924) +==1488778== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488778== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488778== by 0x1121CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488778== by 0x10DD13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488778== by 0x110294: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488778== by 0x11018F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488778== by 0x1107A3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488778== by 0x10C515: main (TestMathsCustomFunctions.cpp:18) +==1488778== +==1488778== Open file descriptor 115: +==1488778== +==1488778== +==1488778== Open file descriptor 112: +==1488778== +==1488778== +==1488778== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMathsCustomFunctions_valgrind.txt +==1488778== +==1488778== +==1488778== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488778== +==1488778== +==1488778== +==1488778== HEAP SUMMARY: +==1488778== in use at exit: 995,073 bytes in 13,913 blocks +==1488778== total heap usage: 57,570 allocs, 43,657 frees, 1,571,238,622 bytes allocated +==1488778== +==1488778== LEAK SUMMARY: +==1488778== definitely lost: 0 bytes in 0 blocks +==1488778== indirectly lost: 0 bytes in 0 blocks +==1488778== possibly lost: 0 bytes in 0 blocks +==1488778== still reachable: 24 bytes in 2 blocks +==1488778== suppressed: 995,049 bytes in 13,911 blocks +==1488778== Reachable blocks (those to which a pointer was found) are not shown. +==1488778== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488778== +==1488778== For lists of detected and suppressed errors, rerun with: -s +==1488778== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestMatrixVentilationProblem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMatrixVentilationProblem_valgrind.txt new file mode 100644 index 0000000000..f53c8742f4 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMatrixVentilationProblem_valgrind.txt @@ -0,0 +1,73 @@ +==1504916== Memcheck, a memory error detector +==1504916== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504916== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504916== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMatrixVentilationProblem -malloc_debug -malloc_dump -memory_info +==1504916== Parent PID: 1488630 +==1504916== +==1504916== +==1504916== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504916== Open file descriptor 12: +==1504916== at 0x7E4907D: pipe (pipe.c:29) +==1504916== by 0x1041407D: ??? +==1504916== by 0xBC894CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504916== by 0x8044418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504916== by 0x7FDDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504916== by 0x640BD38: PetscInitialize (pinit.c:924) +==1504916== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504916== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504916== by 0x117742: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504916== by 0x1128B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504916== by 0x1155E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504916== by 0x115486: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504916== by 0x115B1D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504916== by 0x110B35: main (TestMatrixVentilationProblem.cpp:19) +==1504916== +==1504916== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504916== at 0x7E4DA1C: __open_nocancel (open64_nocancel.c:39) +==1504916== by 0x7DD1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504916== by 0x7695822: ??? +==1504916== by 0x769596F: ??? +==1504916== by 0xBD2E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504916== by 0xBD2E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504916== by 0xBCE4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504916== by 0xBC892DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504916== by 0x8044418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504916== by 0x7FDDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504916== by 0x640BD38: PetscInitialize (pinit.c:924) +==1504916== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504916== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504916== by 0x117742: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504916== by 0x1128B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504916== by 0x1155E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504916== by 0x115486: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504916== by 0x115B1D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504916== by 0x110B35: main (TestMatrixVentilationProblem.cpp:19) +==1504916== +==1504916== Open file descriptor 115: +==1504916== +==1504916== +==1504916== Open file descriptor 112: +==1504916== +==1504916== +==1504916== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMatrixVentilationProblem_valgrind.txt +==1504916== +==1504916== +==1504916== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504916== +==1504916== +==1504916== +==1504916== HEAP SUMMARY: +==1504916== in use at exit: 995,553 bytes in 13,913 blocks +==1504916== total heap usage: 149,926 allocs, 136,013 frees, 1,748,252,000 bytes allocated +==1504916== +==1504916== LEAK SUMMARY: +==1504916== definitely lost: 0 bytes in 0 blocks +==1504916== indirectly lost: 0 bytes in 0 blocks +==1504916== possibly lost: 0 bytes in 0 blocks +==1504916== still reachable: 24 bytes in 2 blocks +==1504916== suppressed: 995,529 bytes in 13,911 blocks +==1504916== Reachable blocks (those to which a pointer was found) are not shown. +==1504916== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504916== +==1504916== For lists of detected and suppressed errors, rerun with: -s +==1504916== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestMemfemMeshReader_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMemfemMeshReader_valgrind.txt new file mode 100644 index 0000000000..ed22bdcbbd --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMemfemMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==1489178== Memcheck, a memory error detector +==1489178== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489178== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489178== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMemfemMeshReader -malloc_debug -malloc_dump -memory_info +==1489178== Parent PID: 1488630 +==1489178== +==1489178== +==1489178== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489178== Open file descriptor 12: +==1489178== at 0x68C407D: pipe (pipe.c:29) +==1489178== by 0xFD3507D: ??? +==1489178== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489178== by 0x7F10418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489178== by 0x7EA9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489178== by 0x6BA0D38: PetscInitialize (pinit.c:924) +==1489178== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489178== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489178== by 0x118FB6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489178== by 0x11470D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489178== by 0x116FF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489178== by 0x116E98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489178== by 0x11752F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489178== by 0x112B35: main (TestMemfemMeshReader.cpp:19) +==1489178== +==1489178== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489178== at 0x68C8A1C: __open_nocancel (open64_nocancel.c:39) +==1489178== by 0x684CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489178== by 0x61F7822: ??? +==1489178== by 0x61F796F: ??? +==1489178== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489178== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489178== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489178== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489178== by 0x7F10418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489178== by 0x7EA9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489178== by 0x6BA0D38: PetscInitialize (pinit.c:924) +==1489178== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489178== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489178== by 0x118FB6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489178== by 0x11470D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489178== by 0x116FF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489178== by 0x116E98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489178== by 0x11752F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489178== by 0x112B35: main (TestMemfemMeshReader.cpp:19) +==1489178== +==1489178== Open file descriptor 115: +==1489178== +==1489178== +==1489178== Open file descriptor 112: +==1489178== +==1489178== +==1489178== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMemfemMeshReader_valgrind.txt +==1489178== +==1489178== +==1489178== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489178== +==1489178== +==1489178== +==1489178== HEAP SUMMARY: +==1489178== in use at exit: 995,457 bytes in 13,913 blocks +==1489178== total heap usage: 100,077 allocs, 86,164 frees, 1,573,508,694 bytes allocated +==1489178== +==1489178== LEAK SUMMARY: +==1489178== definitely lost: 0 bytes in 0 blocks +==1489178== indirectly lost: 0 bytes in 0 blocks +==1489178== possibly lost: 0 bytes in 0 blocks +==1489178== still reachable: 24 bytes in 2 blocks +==1489178== suppressed: 995,433 bytes in 13,911 blocks +==1489178== Reachable blocks (those to which a pointer was found) are not shown. +==1489178== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489178== +==1489178== For lists of detected and suppressed errors, rerun with: -s +==1489178== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt new file mode 100644 index 0000000000..abeb4dd72c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt @@ -0,0 +1,73 @@ +==1490292== Memcheck, a memory error detector +==1490292== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490292== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490292== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMeshBasedCellPopulationWithGhostNodes -malloc_debug -malloc_dump -memory_info +==1490292== Parent PID: 1488630 +==1490292== +==1490292== +==1490292== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490292== Open file descriptor 12: +==1490292== at 0x1010807D: pipe (pipe.c:29) +==1490292== by 0x18A1D07D: ??? +==1490292== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490292== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490292== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490292== by 0xE593D38: PetscInitialize (pinit.c:924) +==1490292== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490292== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490292== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490292== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490292== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490292== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490292== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490292== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) +==1490292== +==1490292== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490292== at 0x1010CA1C: __open_nocancel (open64_nocancel.c:39) +==1490292== by 0x10090BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490292== by 0xF81D822: ??? +==1490292== by 0xF81D96F: ??? +==1490292== by 0x140296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490292== by 0x14029938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490292== by 0x13FDF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490292== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490292== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490292== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490292== by 0xE593D38: PetscInitialize (pinit.c:924) +==1490292== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490292== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490292== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490292== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490292== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490292== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490292== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490292== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) +==1490292== +==1490292== Open file descriptor 115: +==1490292== +==1490292== +==1490292== Open file descriptor 112: +==1490292== +==1490292== +==1490292== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt +==1490292== +==1490292== +==1490292== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490292== +==1490292== +==1490292== +==1490292== HEAP SUMMARY: +==1490292== in use at exit: 995,585 bytes in 13,914 blocks +==1490292== total heap usage: 233,808 allocs, 219,894 frees, 1,596,714,144 bytes allocated +==1490292== +==1490292== LEAK SUMMARY: +==1490292== definitely lost: 0 bytes in 0 blocks +==1490292== indirectly lost: 0 bytes in 0 blocks +==1490292== possibly lost: 0 bytes in 0 blocks +==1490292== still reachable: 56 bytes in 3 blocks +==1490292== suppressed: 995,529 bytes in 13,911 blocks +==1490292== Reachable blocks (those to which a pointer was found) are not shown. +==1490292== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490292== +==1490292== For lists of detected and suppressed errors, rerun with: -s +==1490292== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestMeshBasedCellPopulation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMeshBasedCellPopulation_valgrind.txt new file mode 100644 index 0000000000..5f0fc17fe7 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMeshBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==1490285== Memcheck, a memory error detector +==1490285== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490285== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490285== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==1490285== Parent PID: 1488630 +==1490285== +==1490285== +==1490285== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490285== Open file descriptor 12: +==1490285== at 0xEC9507D: pipe (pipe.c:29) +==1490285== by 0x18A1D07D: ??? +==1490285== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490285== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490285== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490285== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490285== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490285== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490285== by 0x2EFABE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490285== by 0x2E6479: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490285== by 0x2EAD7E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490285== by 0x2EAC1E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490285== by 0x2EB2B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490285== by 0x2E4895: main (TestMeshBasedCellPopulation.cpp:19) +==1490285== +==1490285== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490285== at 0xEC99A1C: __open_nocancel (open64_nocancel.c:39) +==1490285== by 0xEC1DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490285== by 0xE49F822: ??? +==1490285== by 0xE49F96F: ??? +==1490285== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490285== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490285== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490285== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490285== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490285== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490285== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490285== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490285== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490285== by 0x2EFABE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490285== by 0x2E6479: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490285== by 0x2EAD7E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490285== by 0x2EAC1E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490285== by 0x2EB2B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490285== by 0x2E4895: main (TestMeshBasedCellPopulation.cpp:19) +==1490285== +==1490285== Open file descriptor 115: +==1490285== +==1490285== +==1490285== Open file descriptor 112: +==1490285== +==1490285== +==1490285== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshBasedCellPopulation_valgrind.txt +==1490285== +==1490285== +==1490285== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490285== +==1490285== +==1490285== +==1490285== HEAP SUMMARY: +==1490285== in use at exit: 995,585 bytes in 13,914 blocks +==1490285== total heap usage: 157,387 allocs, 143,473 frees, 1,599,686,081 bytes allocated +==1490285== +==1490285== LEAK SUMMARY: +==1490285== definitely lost: 0 bytes in 0 blocks +==1490285== indirectly lost: 0 bytes in 0 blocks +==1490285== possibly lost: 0 bytes in 0 blocks +==1490285== still reachable: 56 bytes in 3 blocks +==1490285== suppressed: 995,529 bytes in 13,911 blocks +==1490285== Reachable blocks (those to which a pointer was found) are not shown. +==1490285== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490285== +==1490285== For lists of detected and suppressed errors, rerun with: -s +==1490285== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestMeshWriters_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMeshWriters_valgrind.txt new file mode 100644 index 0000000000..eef1c8d1f0 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMeshWriters_valgrind.txt @@ -0,0 +1,73 @@ +==1489336== Memcheck, a memory error detector +==1489336== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489336== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489336== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMeshWriters -malloc_debug -malloc_dump -memory_info +==1489336== Parent PID: 1488630 +==1489336== +==1489336== +==1489336== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489336== Open file descriptor 12: +==1489336== at 0x7E6007D: pipe (pipe.c:29) +==1489336== by 0xFD3507D: ??? +==1489336== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489336== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489336== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489336== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489336== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489336== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489336== by 0x1482F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489336== by 0x140E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489336== by 0x143F06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489336== by 0x143DA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489336== by 0x14443D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489336== by 0x13F235: main (TestMeshWriters.cpp:19) +==1489336== +==1489336== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489336== at 0x7E64A1C: __open_nocancel (open64_nocancel.c:39) +==1489336== by 0x7DE8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489336== by 0x7575822: ??? +==1489336== by 0x757596F: ??? +==1489336== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489336== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489336== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489336== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489336== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489336== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489336== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489336== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489336== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489336== by 0x1482F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489336== by 0x140E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489336== by 0x143F06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489336== by 0x143DA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489336== by 0x14443D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489336== by 0x13F235: main (TestMeshWriters.cpp:19) +==1489336== +==1489336== Open file descriptor 115: +==1489336== +==1489336== +==1489336== Open file descriptor 112: +==1489336== +==1489336== +==1489336== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshWriters_valgrind.txt +==1489336== +==1489336== +==1489336== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489336== +==1489336== +==1489336== +==1489336== HEAP SUMMARY: +==1489336== in use at exit: 995,457 bytes in 13,913 blocks +==1489336== total heap usage: 200,769 allocs, 186,856 frees, 1,585,362,736 bytes allocated +==1489336== +==1489336== LEAK SUMMARY: +==1489336== definitely lost: 0 bytes in 0 blocks +==1489336== indirectly lost: 0 bytes in 0 blocks +==1489336== possibly lost: 0 bytes in 0 blocks +==1489336== still reachable: 24 bytes in 2 blocks +==1489336== suppressed: 995,433 bytes in 13,911 blocks +==1489336== Reachable blocks (those to which a pointer was found) are not shown. +==1489336== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489336== +==1489336== For lists of detected and suppressed errors, rerun with: -s +==1489336== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-02-21_13-45-57/TestMirams2010WntOdeSystem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMirams2010WntOdeSystem_valgrind.txt new file mode 100644 index 0000000000..32bef62e1e --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMirams2010WntOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==1504270== Memcheck, a memory error detector +==1504270== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504270== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504270== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestMirams2010WntOdeSystem -malloc_debug -malloc_dump -memory_info +==1504270== Parent PID: 1488630 +==1504270== +==1504270== +==1504270== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504270== Open file descriptor 12: +==1504270== at 0xEAA107D: pipe (pipe.c:29) +==1504270== by 0x1A6E107D: ??? +==1504270== by 0x158E54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504270== by 0x121B2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504270== by 0x1214BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504270== by 0x10E42D38: PetscInitialize (pinit.c:924) +==1504270== by 0xE6A5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504270== by 0xE6A51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504270== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504270== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504270== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504270== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504270== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504270== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) +==1504270== +==1504270== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504270== at 0xEAA5A1C: __open_nocancel (open64_nocancel.c:39) +==1504270== by 0xEA29BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504270== by 0xE6D9822: ??? +==1504270== by 0xE6D996F: ??? +==1504270== by 0x1598A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504270== by 0x1598A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504270== by 0x15940922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504270== by 0x158E52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504270== by 0x121B2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504270== by 0x1214BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504270== by 0x10E42D38: PetscInitialize (pinit.c:924) +==1504270== by 0xE6A5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504270== by 0xE6A51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504270== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504270== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504270== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504270== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504270== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504270== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) +==1504270== +==1504270== Open file descriptor 115: +==1504270== +==1504270== +==1504270== Open file descriptor 112: +==1504270== +==1504270== +==1504270== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMirams2010WntOdeSystem_valgrind.txt +==1504270== +==1504270== +==1504270== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504270== +==1504270== +==1504270== +==1504270== HEAP SUMMARY: +==1504270== in use at exit: 995,601 bytes in 13,914 blocks +==1504270== total heap usage: 78,948 allocs, 65,034 frees, 1,573,403,310 bytes allocated +==1504270== +==1504270== LEAK SUMMARY: +==1504270== definitely lost: 0 bytes in 0 blocks +==1504270== indirectly lost: 0 bytes in 0 blocks +==1504270== possibly lost: 0 bytes in 0 blocks +==1504270== still reachable: 56 bytes in 3 blocks +==1504270== suppressed: 995,545 bytes in 13,911 blocks +==1504270== Reachable blocks (those to which a pointer was found) are not shown. +==1504270== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504270== +==1504270== For lists of detected and suppressed errors, rerun with: -s +==1504270== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestMixedDimensionMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMixedDimensionMesh_valgrind.txt new file mode 100644 index 0000000000..662b6ca85a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMixedDimensionMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489025== Memcheck, a memory error detector +==1489025== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489025== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489025== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMixedDimensionMesh -malloc_debug -malloc_dump -memory_info +==1489025== Parent PID: 1488630 +==1489025== +==1489025== +==1489025== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489025== Open file descriptor 12: +==1489025== at 0x7DBB07D: pipe (pipe.c:29) +==1489025== by 0xFD3507D: ??? +==1489025== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489025== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489025== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489025== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489025== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489025== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489025== by 0x125042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489025== by 0x11E27D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489025== by 0x121016: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489025== by 0x120EB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489025== by 0x12154D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489025== by 0x11C6A5: main (TestMixedDimensionMesh.cpp:19) +==1489025== +==1489025== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489025== at 0x7DBFA1C: __open_nocancel (open64_nocancel.c:39) +==1489025== by 0x7D43BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489025== by 0x61F7822: ??? +==1489025== by 0x61F796F: ??? +==1489025== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489025== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489025== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489025== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489025== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489025== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489025== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489025== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489025== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489025== by 0x125042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489025== by 0x11E27D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489025== by 0x121016: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489025== by 0x120EB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489025== by 0x12154D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489025== by 0x11C6A5: main (TestMixedDimensionMesh.cpp:19) +==1489025== +==1489025== Open file descriptor 115: +==1489025== +==1489025== +==1489025== Open file descriptor 112: +==1489025== +==1489025== +==1489025== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMixedDimensionMesh_valgrind.txt +==1489025== +==1489025== +==1489025== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489025== +==1489025== +==1489025== +==1489025== HEAP SUMMARY: +==1489025== in use at exit: 995,457 bytes in 13,913 blocks +==1489025== total heap usage: 134,540 allocs, 120,627 frees, 1,576,759,954 bytes allocated +==1489025== +==1489025== LEAK SUMMARY: +==1489025== definitely lost: 0 bytes in 0 blocks +==1489025== indirectly lost: 0 bytes in 0 blocks +==1489025== possibly lost: 0 bytes in 0 blocks +==1489025== still reachable: 24 bytes in 2 blocks +==1489025== suppressed: 995,433 bytes in 13,911 blocks +==1489025== Reachable blocks (those to which a pointer was found) are not shown. +==1489025== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489025== +==1489025== For lists of detected and suppressed errors, rerun with: -s +==1489025== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestMockEulerIvpOdeSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMockEulerIvpOdeSolver_valgrind.txt new file mode 100644 index 0000000000..260e11627c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMockEulerIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489406== Memcheck, a memory error detector +==1489406== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489406== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489406== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestMockEulerIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==1489406== Parent PID: 1488630 +==1489406== +==1489406== +==1489406== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489406== Open file descriptor 12: +==1489406== at 0x4F5507D: pipe (pipe.c:29) +==1489406== by 0xB1E807D: ??? +==1489406== by 0x8CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489406== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489406== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489406== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489406== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489406== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489406== by 0x123542: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489406== by 0x11E7E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489406== by 0x120D60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489406== by 0x120C5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489406== by 0x12126F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489406== by 0x11CE65: main (TestMockEulerIvpOdeSolver.cpp:18) +==1489406== +==1489406== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489406== at 0x4F59A1C: __open_nocancel (open64_nocancel.c:39) +==1489406== by 0x4EDDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489406== by 0x4B71822: ??? +==1489406== by 0x4B7196F: ??? +==1489406== by 0x8D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489406== by 0x8D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489406== by 0x8D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489406== by 0x8CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489406== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489406== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489406== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489406== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489406== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489406== by 0x123542: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489406== by 0x11E7E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489406== by 0x120D60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489406== by 0x120C5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489406== by 0x12126F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489406== by 0x11CE65: main (TestMockEulerIvpOdeSolver.cpp:18) +==1489406== +==1489406== Open file descriptor 115: +==1489406== +==1489406== +==1489406== Open file descriptor 112: +==1489406== +==1489406== +==1489406== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMockEulerIvpOdeSolver_valgrind.txt +==1489406== +==1489406== +==1489406== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489406== +==1489406== +==1489406== +==1489406== HEAP SUMMARY: +==1489406== in use at exit: 995,137 bytes in 13,913 blocks +==1489406== total heap usage: 57,778 allocs, 43,865 frees, 1,571,273,166 bytes allocated +==1489406== +==1489406== LEAK SUMMARY: +==1489406== definitely lost: 0 bytes in 0 blocks +==1489406== indirectly lost: 0 bytes in 0 blocks +==1489406== possibly lost: 0 bytes in 0 blocks +==1489406== still reachable: 24 bytes in 2 blocks +==1489406== suppressed: 995,113 bytes in 13,911 blocks +==1489406== Reachable blocks (those to which a pointer was found) are not shown. +==1489406== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489406== +==1489406== For lists of detected and suppressed errors, rerun with: -s +==1489406== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestModernCppFeatures_valgrind.txt b/log-files/2024-02-21_13-45-57/TestModernCppFeatures_valgrind.txt new file mode 100644 index 0000000000..c753ef3fa6 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestModernCppFeatures_valgrind.txt @@ -0,0 +1,73 @@ +==1488637== Memcheck, a memory error detector +==1488637== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488637== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488637== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestModernCppFeatures -malloc_debug -malloc_dump -memory_info +==1488637== Parent PID: 1488630 +==1488637== +==1488637== +==1488637== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488637== Open file descriptor 12: +==1488637== at 0x616B07D: pipe (pipe.c:29) +==1488637== by 0xAEA607D: ??? +==1488637== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488637== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488637== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488637== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488637== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488637== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488637== by 0x115753: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488637== by 0x111013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488637== by 0x1137AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488637== by 0x1136AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488637== by 0x113CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488637== by 0x10F815: main (TestModernCppFeatures.cpp:18) +==1488637== +==1488637== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488637== at 0x616FA1C: __open_nocancel (open64_nocancel.c:39) +==1488637== by 0x60F3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488637== by 0x5CAC822: ??? +==1488637== by 0x5CAC96F: ??? +==1488637== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488637== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488637== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488637== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488637== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488637== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488637== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488637== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488637== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488637== by 0x115753: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488637== by 0x111013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488637== by 0x1137AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488637== by 0x1136AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488637== by 0x113CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488637== by 0x10F815: main (TestModernCppFeatures.cpp:18) +==1488637== +==1488637== Open file descriptor 115: +==1488637== +==1488637== +==1488637== Open file descriptor 112: +==1488637== +==1488637== +==1488637== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestModernCppFeatures_valgrind.txt +==1488637== +==1488637== +==1488637== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488637== +==1488637== +==1488637== +==1488637== HEAP SUMMARY: +==1488637== in use at exit: 995,073 bytes in 13,913 blocks +==1488637== total heap usage: 57,562 allocs, 43,649 frees, 1,571,238,727 bytes allocated +==1488637== +==1488637== LEAK SUMMARY: +==1488637== definitely lost: 0 bytes in 0 blocks +==1488637== indirectly lost: 0 bytes in 0 blocks +==1488637== possibly lost: 0 bytes in 0 blocks +==1488637== still reachable: 24 bytes in 2 blocks +==1488637== suppressed: 995,049 bytes in 13,911 blocks +==1488637== Reachable blocks (those to which a pointer was found) are not shown. +==1488637== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488637== +==1488637== For lists of detected and suppressed errors, rerun with: -s +==1488637== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestModifiers_valgrind.txt b/log-files/2024-02-21_13-45-57/TestModifiers_valgrind.txt new file mode 100644 index 0000000000..4a6976fdba --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestModifiers_valgrind.txt @@ -0,0 +1,73 @@ +==1505922== Memcheck, a memory error detector +==1505922== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505922== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505922== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestModifiers -malloc_debug -malloc_dump -memory_info +==1505922== Parent PID: 1488630 +==1505922== +==1505922== +==1505922== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505922== Open file descriptor 12: +==1505922== at 0x88DE07D: pipe (pipe.c:29) +==1505922== by 0x13F9707D: ??? +==1505922== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505922== by 0x9FD7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505922== by 0x9F70D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505922== by 0x8C67D38: PetscInitialize (pinit.c:924) +==1505922== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505922== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505922== by 0x124F74: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505922== by 0x11FB1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505922== by 0x12265E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505922== by 0x1224FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505922== by 0x122B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505922== by 0x11DF45: main (TestModifiers.cpp:19) +==1505922== +==1505922== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505922== at 0x88E2A1C: __open_nocancel (open64_nocancel.c:39) +==1505922== by 0x8866BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505922== by 0x8413822: ??? +==1505922== by 0x841396F: ??? +==1505922== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505922== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505922== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505922== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505922== by 0x9FD7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505922== by 0x9F70D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505922== by 0x8C67D38: PetscInitialize (pinit.c:924) +==1505922== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505922== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505922== by 0x124F74: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505922== by 0x11FB1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505922== by 0x12265E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505922== by 0x1224FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505922== by 0x122B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505922== by 0x11DF45: main (TestModifiers.cpp:19) +==1505922== +==1505922== Open file descriptor 115: +==1505922== +==1505922== +==1505922== Open file descriptor 112: +==1505922== +==1505922== +==1505922== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestModifiers_valgrind.txt +==1505922== +==1505922== +==1505922== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505922== +==1505922== +==1505922== +==1505922== HEAP SUMMARY: +==1505922== in use at exit: 997,448 bytes in 13,917 blocks +==1505922== total heap usage: 63,196 allocs, 49,279 frees, 1,572,561,053 bytes allocated +==1505922== +==1505922== LEAK SUMMARY: +==1505922== definitely lost: 0 bytes in 0 blocks +==1505922== indirectly lost: 0 bytes in 0 blocks +==1505922== possibly lost: 0 bytes in 0 blocks +==1505922== still reachable: 1,903 bytes in 6 blocks +==1505922== suppressed: 995,545 bytes in 13,911 blocks +==1505922== Reachable blocks (those to which a pointer was found) are not shown. +==1505922== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505922== +==1505922== For lists of detected and suppressed errors, rerun with: -s +==1505922== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestMonodomainConductionVelocity_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMonodomainConductionVelocity_valgrind.txt new file mode 100644 index 0000000000..5ff59c6cb6 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMonodomainConductionVelocity_valgrind.txt @@ -0,0 +1,73 @@ +==1506713== Memcheck, a memory error detector +==1506713== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506713== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506713== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainConductionVelocity -malloc_debug -malloc_dump -memory_info +==1506713== Parent PID: 1488630 +==1506713== +==1506713== +==1506713== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506713== Open file descriptor 12: +==1506713== at 0xA4C507D: pipe (pipe.c:29) +==1506713== by 0x13F9607D: ??? +==1506713== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506713== by 0xBBC0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506713== by 0xBB59D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506713== by 0xA84ED38: PetscInitialize (pinit.c:924) +==1506713== by 0x9DAA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506713== by 0x9DAA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506713== by 0x126B4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506713== by 0x121E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506713== by 0x1248CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506713== by 0x12476C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506713== by 0x124E03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506713== by 0x120235: main (TestMonodomainConductionVelocity.cpp:19) +==1506713== +==1506713== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506713== at 0xA4C9A1C: __open_nocancel (open64_nocancel.c:39) +==1506713== by 0xA44DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506713== by 0x9DDE822: ??? +==1506713== by 0x9DDE96F: ??? +==1506713== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506713== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506713== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506713== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506713== by 0xBBC0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506713== by 0xBB59D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506713== by 0xA84ED38: PetscInitialize (pinit.c:924) +==1506713== by 0x9DAA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506713== by 0x9DAA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506713== by 0x126B4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506713== by 0x121E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506713== by 0x1248CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506713== by 0x12476C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506713== by 0x124E03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506713== by 0x120235: main (TestMonodomainConductionVelocity.cpp:19) +==1506713== +==1506713== Open file descriptor 115: +==1506713== +==1506713== +==1506713== Open file descriptor 112: +==1506713== +==1506713== +==1506713== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainConductionVelocity_valgrind.txt +==1506713== +==1506713== +==1506713== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506713== +==1506713== +==1506713== +==1506713== HEAP SUMMARY: +==1506713== in use at exit: 996,049 bytes in 13,923 blocks +==1506713== total heap usage: 398,075 allocs, 384,152 frees, 1,652,306,849 bytes allocated +==1506713== +==1506713== LEAK SUMMARY: +==1506713== definitely lost: 0 bytes in 0 blocks +==1506713== indirectly lost: 0 bytes in 0 blocks +==1506713== possibly lost: 0 bytes in 0 blocks +==1506713== still reachable: 24 bytes in 2 blocks +==1506713== suppressed: 996,025 bytes in 13,921 blocks +==1506713== Reachable blocks (those to which a pointer was found) are not shown. +==1506713== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506713== +==1506713== For lists of detected and suppressed errors, rerun with: -s +==1506713== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2024-02-21_13-45-57/TestMonodomainFitzHughNagumo_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMonodomainFitzHughNagumo_valgrind.txt new file mode 100644 index 0000000000..ed71b4f007 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMonodomainFitzHughNagumo_valgrind.txt @@ -0,0 +1,73 @@ +==1506743== Memcheck, a memory error detector +==1506743== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506743== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506743== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainFitzHughNagumo -malloc_debug -malloc_dump -memory_info +==1506743== Parent PID: 1488630 +==1506743== +==1506743== +==1506743== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506743== Open file descriptor 12: +==1506743== at 0xA45207D: pipe (pipe.c:29) +==1506743== by 0x13F9607D: ??? +==1506743== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506743== by 0xBB4B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506743== by 0xBAE4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506743== by 0xA7DBD38: PetscInitialize (pinit.c:924) +==1506743== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506743== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506743== by 0x1211B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506743== by 0x11C2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506743== by 0x11E6C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506743== by 0x11E5BE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506743== by 0x11EBD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506743== by 0x11AAB5: main (TestMonodomainFitzHughNagumo.cpp:18) +==1506743== +==1506743== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506743== at 0xA456A1C: __open_nocancel (open64_nocancel.c:39) +==1506743== by 0xA3DABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506743== by 0x9D6B822: ??? +==1506743== by 0x9D6B96F: ??? +==1506743== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506743== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506743== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506743== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506743== by 0xBB4B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506743== by 0xBAE4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506743== by 0xA7DBD38: PetscInitialize (pinit.c:924) +==1506743== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506743== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506743== by 0x1211B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506743== by 0x11C2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506743== by 0x11E6C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506743== by 0x11E5BE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506743== by 0x11EBD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506743== by 0x11AAB5: main (TestMonodomainFitzHughNagumo.cpp:18) +==1506743== +==1506743== Open file descriptor 115: +==1506743== +==1506743== +==1506743== Open file descriptor 112: +==1506743== +==1506743== +==1506743== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainFitzHughNagumo_valgrind.txt +==1506743== +==1506743== +==1506743== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506743== +==1506743== +==1506743== +==1506743== HEAP SUMMARY: +==1506743== in use at exit: 996,049 bytes in 13,923 blocks +==1506743== total heap usage: 93,383 allocs, 79,460 frees, 1,577,300,389 bytes allocated +==1506743== +==1506743== LEAK SUMMARY: +==1506743== definitely lost: 0 bytes in 0 blocks +==1506743== indirectly lost: 0 bytes in 0 blocks +==1506743== possibly lost: 0 bytes in 0 blocks +==1506743== still reachable: 24 bytes in 2 blocks +==1506743== suppressed: 996,025 bytes in 13,921 blocks +==1506743== Reachable blocks (those to which a pointer was found) are not shown. +==1506743== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506743== +==1506743== For lists of detected and suppressed errors, rerun with: -s +==1506743== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 38 from 36) diff --git a/log-files/2024-02-21_13-45-57/TestMonodomainMassLumping_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMonodomainMassLumping_valgrind.txt new file mode 100644 index 0000000000..17e59a8877 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMonodomainMassLumping_valgrind.txt @@ -0,0 +1,73 @@ +==1506745== Memcheck, a memory error detector +==1506745== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506745== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506745== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainMassLumping -malloc_debug -malloc_dump -memory_info +==1506745== Parent PID: 1488630 +==1506745== +==1506745== +==1506745== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506745== Open file descriptor 12: +==1506745== at 0xA4FA07D: pipe (pipe.c:29) +==1506745== by 0x13F9607D: ??? +==1506745== by 0xD1D14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506745== by 0x9DE8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506745== by 0x9D81D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506745== by 0xA883D38: PetscInitialize (pinit.c:924) +==1506745== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506745== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506745== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506745== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506745== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506745== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506745== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506745== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) +==1506745== +==1506745== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506745== at 0xA4FEA1C: __open_nocancel (open64_nocancel.c:39) +==1506745== by 0xA482BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506745== by 0x9CDC822: ??? +==1506745== by 0x9CDC96F: ??? +==1506745== by 0xD2766DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506745== by 0xD276938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506745== by 0xD22C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506745== by 0xD1D12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506745== by 0x9DE8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506745== by 0x9D81D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506745== by 0xA883D38: PetscInitialize (pinit.c:924) +==1506745== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506745== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506745== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506745== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506745== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506745== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506745== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506745== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) +==1506745== +==1506745== Open file descriptor 115: +==1506745== +==1506745== +==1506745== Open file descriptor 112: +==1506745== +==1506745== +==1506745== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainMassLumping_valgrind.txt +==1506745== +==1506745== +==1506745== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506745== +==1506745== +==1506745== +==1506745== HEAP SUMMARY: +==1506745== in use at exit: 995,990 bytes in 13,919 blocks +==1506745== total heap usage: 419,154 allocs, 405,235 frees, 1,773,052,142 bytes allocated +==1506745== +==1506745== LEAK SUMMARY: +==1506745== definitely lost: 0 bytes in 0 blocks +==1506745== indirectly lost: 0 bytes in 0 blocks +==1506745== possibly lost: 0 bytes in 0 blocks +==1506745== still reachable: 24 bytes in 2 blocks +==1506745== suppressed: 995,966 bytes in 13,917 blocks +==1506745== Reachable blocks (those to which a pointer was found) are not shown. +==1506745== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506745== +==1506745== For lists of detected and suppressed errors, rerun with: -s +==1506745== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 32) diff --git a/log-files/2024-02-21_13-45-57/TestMonodomainProblem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMonodomainProblem_valgrind.txt new file mode 100644 index 0000000000..0bf620c432 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMonodomainProblem_valgrind.txt @@ -0,0 +1,74 @@ +==1506726== Memcheck, a memory error detector +==1506726== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506726== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506726== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info +==1506726== Parent PID: 1488630 +==1506726== +==1506726== Warning: invalid file descriptor -1 in syscall close() +==1506726== +==1506726== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506726== Open file descriptor 12: +==1506726== at 0xBD7307D: pipe (pipe.c:29) +==1506726== by 0x13F9607D: ??? +==1506726== by 0xFC5C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506726== by 0xB661418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506726== by 0xB5FAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506726== by 0x9F3CD38: PetscInitialize (pinit.c:924) +==1506726== by 0x9DAA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506726== by 0x9DAA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506726== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506726== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506726== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506726== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506726== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506726== by 0x13FC05: main (TestMonodomainProblem.cpp:19) +==1506726== +==1506726== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506726== at 0xBD77A1C: __open_nocancel (open64_nocancel.c:39) +==1506726== by 0xBCFBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506726== by 0x9DDE822: ??? +==1506726== by 0x9DDE96F: ??? +==1506726== by 0xFD016DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506726== by 0xFD01938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506726== by 0xFCB7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506726== by 0xFC5C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506726== by 0xB661418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506726== by 0xB5FAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506726== by 0x9F3CD38: PetscInitialize (pinit.c:924) +==1506726== by 0x9DAA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506726== by 0x9DAA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506726== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506726== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506726== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506726== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506726== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506726== by 0x13FC05: main (TestMonodomainProblem.cpp:19) +==1506726== +==1506726== Open file descriptor 115: +==1506726== +==1506726== +==1506726== Open file descriptor 112: +==1506726== +==1506726== +==1506726== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt +==1506726== +==1506726== +==1506726== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506726== +==1506726== +==1506726== +==1506726== HEAP SUMMARY: +==1506726== in use at exit: 995,990 bytes in 13,919 blocks +==1506726== total heap usage: 6,630,617 allocs, 6,616,698 frees, 4,251,676,699 bytes allocated +==1506726== +==1506726== LEAK SUMMARY: +==1506726== definitely lost: 0 bytes in 0 blocks +==1506726== indirectly lost: 0 bytes in 0 blocks +==1506726== possibly lost: 0 bytes in 0 blocks +==1506726== still reachable: 24 bytes in 2 blocks +==1506726== suppressed: 995,966 bytes in 13,917 blocks +==1506726== Reachable blocks (those to which a pointer was found) are not shown. +==1506726== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506726== +==1506726== For lists of detected and suppressed errors, rerun with: -s +==1506726== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt new file mode 100644 index 0000000000..0c50d2b82d --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1506741== Memcheck, a memory error detector +==1506741== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506741== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506741== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainPurkinjeAssemblersAndSolver -malloc_debug -malloc_dump -memory_info +==1506741== Parent PID: 1488630 +==1506741== +==1506741== +==1506741== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506741== Open file descriptor 12: +==1506741== at 0xBCC907D: pipe (pipe.c:29) +==1506741== by 0x13F9807D: ??? +==1506741== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506741== by 0xC044418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506741== by 0xBFDDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506741== by 0xA271D38: PetscInitialize (pinit.c:924) +==1506741== by 0xA147153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506741== by 0xA1471A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506741== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506741== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506741== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506741== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506741== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506741== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) +==1506741== +==1506741== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506741== at 0xBCCDA1C: __open_nocancel (open64_nocancel.c:39) +==1506741== by 0xBC51BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506741== by 0xB4FB822: ??? +==1506741== by 0xB4FB96F: ??? +==1506741== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506741== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506741== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506741== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506741== by 0xC044418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506741== by 0xBFDDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506741== by 0xA271D38: PetscInitialize (pinit.c:924) +==1506741== by 0xA147153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506741== by 0xA1471A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506741== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506741== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506741== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506741== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506741== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506741== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) +==1506741== +==1506741== Open file descriptor 115: +==1506741== +==1506741== +==1506741== Open file descriptor 112: +==1506741== +==1506741== +==1506741== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt +==1506741== +==1506741== +==1506741== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506741== +==1506741== +==1506741== +==1506741== HEAP SUMMARY: +==1506741== in use at exit: 996,049 bytes in 13,923 blocks +==1506741== total heap usage: 96,178 allocs, 82,255 frees, 1,578,125,943 bytes allocated +==1506741== +==1506741== LEAK SUMMARY: +==1506741== definitely lost: 0 bytes in 0 blocks +==1506741== indirectly lost: 0 bytes in 0 blocks +==1506741== possibly lost: 0 bytes in 0 blocks +==1506741== still reachable: 24 bytes in 2 blocks +==1506741== suppressed: 996,025 bytes in 13,921 blocks +==1506741== Reachable blocks (those to which a pointer was found) are not shown. +==1506741== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506741== +==1506741== For lists of detected and suppressed errors, rerun with: -s +==1506741== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 38) diff --git a/log-files/2024-02-21_13-45-57/TestMonodomainPurkinjeProblem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMonodomainPurkinjeProblem_valgrind.txt new file mode 100644 index 0000000000..6a7b15c375 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMonodomainPurkinjeProblem_valgrind.txt @@ -0,0 +1,73 @@ +==1506742== Memcheck, a memory error detector +==1506742== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506742== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506742== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainPurkinjeProblem -malloc_debug -malloc_dump -memory_info +==1506742== Parent PID: 1488630 +==1506742== +==1506742== +==1506742== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506742== Open file descriptor 12: +==1506742== at 0xA3C307D: pipe (pipe.c:29) +==1506742== by 0x13F9607D: ??? +==1506742== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506742== by 0xBABC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506742== by 0xBA55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506742== by 0xA74CD38: PetscInitialize (pinit.c:924) +==1506742== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506742== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506742== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506742== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506742== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506742== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506742== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506742== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) +==1506742== +==1506742== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506742== at 0xA3C7A1C: __open_nocancel (open64_nocancel.c:39) +==1506742== by 0xA34BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506742== by 0x9CDC822: ??? +==1506742== by 0x9CDC96F: ??? +==1506742== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506742== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506742== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506742== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506742== by 0xBABC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506742== by 0xBA55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506742== by 0xA74CD38: PetscInitialize (pinit.c:924) +==1506742== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506742== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506742== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506742== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506742== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506742== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506742== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506742== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) +==1506742== +==1506742== Open file descriptor 115: +==1506742== +==1506742== +==1506742== Open file descriptor 112: +==1506742== +==1506742== +==1506742== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainPurkinjeProblem_valgrind.txt +==1506742== +==1506742== +==1506742== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506742== +==1506742== +==1506742== +==1506742== HEAP SUMMARY: +==1506742== in use at exit: 995,990 bytes in 13,919 blocks +==1506742== total heap usage: 1,163,427 allocs, 1,149,508 frees, 2,813,693,045 bytes allocated +==1506742== +==1506742== LEAK SUMMARY: +==1506742== definitely lost: 0 bytes in 0 blocks +==1506742== indirectly lost: 0 bytes in 0 blocks +==1506742== possibly lost: 0 bytes in 0 blocks +==1506742== still reachable: 24 bytes in 2 blocks +==1506742== suppressed: 995,966 bytes in 13,917 blocks +==1506742== Reachable blocks (those to which a pointer was found) are not shown. +==1506742== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506742== +==1506742== For lists of detected and suppressed errors, rerun with: -s +==1506742== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 66 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestMonodomainStiffnessMatrixAssembler_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMonodomainStiffnessMatrixAssembler_valgrind.txt new file mode 100644 index 0000000000..4a339d14cf --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMonodomainStiffnessMatrixAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==1506709== Memcheck, a memory error detector +==1506709== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506709== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506709== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainStiffnessMatrixAssembler -malloc_debug -malloc_dump -memory_info +==1506709== Parent PID: 1488630 +==1506709== +==1506709== +==1506709== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506709== Open file descriptor 12: +==1506709== at 0xBC5407D: pipe (pipe.c:29) +==1506709== by 0x13F9607D: ??? +==1506709== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506709== by 0xBFD1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506709== by 0xBF6AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506709== by 0xA1FCD38: PetscInitialize (pinit.c:924) +==1506709== by 0xA0D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506709== by 0xA0D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506709== by 0x13BAD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506709== by 0x136853: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506709== by 0x1393FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506709== by 0x1392F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506709== by 0x139909: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506709== by 0x135055: main (TestMonodomainStiffnessMatrixAssembler.cpp:18) +==1506709== +==1506709== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506709== at 0xBC58A1C: __open_nocancel (open64_nocancel.c:39) +==1506709== by 0xBBDCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506709== by 0xB486822: ??? +==1506709== by 0xB48696F: ??? +==1506709== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506709== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506709== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506709== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506709== by 0xBFD1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506709== by 0xBF6AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506709== by 0xA1FCD38: PetscInitialize (pinit.c:924) +==1506709== by 0xA0D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506709== by 0xA0D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506709== by 0x13BAD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506709== by 0x136853: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506709== by 0x1393FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506709== by 0x1392F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506709== by 0x139909: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506709== by 0x135055: main (TestMonodomainStiffnessMatrixAssembler.cpp:18) +==1506709== +==1506709== Open file descriptor 115: +==1506709== +==1506709== +==1506709== Open file descriptor 112: +==1506709== +==1506709== +==1506709== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainStiffnessMatrixAssembler_valgrind.txt +==1506709== +==1506709== +==1506709== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506709== +==1506709== +==1506709== +==1506709== HEAP SUMMARY: +==1506709== in use at exit: 995,569 bytes in 13,913 blocks +==1506709== total heap usage: 62,145 allocs, 48,232 frees, 1,571,703,793 bytes allocated +==1506709== +==1506709== LEAK SUMMARY: +==1506709== definitely lost: 0 bytes in 0 blocks +==1506709== indirectly lost: 0 bytes in 0 blocks +==1506709== possibly lost: 0 bytes in 0 blocks +==1506709== still reachable: 24 bytes in 2 blocks +==1506709== suppressed: 995,545 bytes in 13,911 blocks +==1506709== Reachable blocks (those to which a pointer was found) are not shown. +==1506709== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506709== +==1506709== For lists of detected and suppressed errors, rerun with: -s +==1506709== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestMonodomainTissue_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMonodomainTissue_valgrind.txt new file mode 100644 index 0000000000..b7d0d72242 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMonodomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==1506764== Memcheck, a memory error detector +==1506764== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506764== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506764== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainTissue -malloc_debug -malloc_dump -memory_info +==1506764== Parent PID: 1488630 +==1506764== +==1506764== +==1506764== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506764== Open file descriptor 12: +==1506764== at 0xB78307D: pipe (pipe.c:29) +==1506764== by 0x13F9607D: ??? +==1506764== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506764== by 0xBAFE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506764== by 0xBA97D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506764== by 0x9E38D38: PetscInitialize (pinit.c:924) +==1506764== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506764== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506764== by 0x1294CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506764== by 0x1242BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506764== by 0x126FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506764== by 0x126E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506764== by 0x1274D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506764== by 0x1226E5: main (TestMonodomainTissue.cpp:19) +==1506764== +==1506764== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506764== at 0xB787A1C: __open_nocancel (open64_nocancel.c:39) +==1506764== by 0xB70BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506764== by 0x9CDC822: ??? +==1506764== by 0x9CDC96F: ??? +==1506764== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506764== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506764== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506764== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506764== by 0xBAFE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506764== by 0xBA97D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506764== by 0x9E38D38: PetscInitialize (pinit.c:924) +==1506764== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506764== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506764== by 0x1294CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506764== by 0x1242BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506764== by 0x126FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506764== by 0x126E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506764== by 0x1274D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506764== by 0x1226E5: main (TestMonodomainTissue.cpp:19) +==1506764== +==1506764== Open file descriptor 115: +==1506764== +==1506764== +==1506764== Open file descriptor 112: +==1506764== +==1506764== +==1506764== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainTissue_valgrind.txt +==1506764== +==1506764== +==1506764== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506764== +==1506764== +==1506764== +==1506764== HEAP SUMMARY: +==1506764== in use at exit: 995,569 bytes in 13,913 blocks +==1506764== total heap usage: 273,344 allocs, 259,431 frees, 1,627,734,237 bytes allocated +==1506764== +==1506764== LEAK SUMMARY: +==1506764== definitely lost: 0 bytes in 0 blocks +==1506764== indirectly lost: 0 bytes in 0 blocks +==1506764== possibly lost: 0 bytes in 0 blocks +==1506764== still reachable: 24 bytes in 2 blocks +==1506764== suppressed: 995,545 bytes in 13,911 blocks +==1506764== Reachable blocks (those to which a pointer was found) are not shown. +==1506764== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506764== +==1506764== For lists of detected and suppressed errors, rerun with: -s +==1506764== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestMonodomainWithSvi_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMonodomainWithSvi_valgrind.txt new file mode 100644 index 0000000000..7bd2c98166 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMonodomainWithSvi_valgrind.txt @@ -0,0 +1,73 @@ +==1506776== Memcheck, a memory error detector +==1506776== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506776== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506776== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainWithSvi -malloc_debug -malloc_dump -memory_info +==1506776== Parent PID: 1488630 +==1506776== +==1506776== +==1506776== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506776== Open file descriptor 12: +==1506776== at 0xA45207D: pipe (pipe.c:29) +==1506776== by 0x13F9607D: ??? +==1506776== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506776== by 0xBB4B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506776== by 0xBAE4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506776== by 0xA7DBD38: PetscInitialize (pinit.c:924) +==1506776== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506776== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506776== by 0x123842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506776== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506776== by 0x121416: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506776== by 0x1212B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506776== by 0x12194D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506776== by 0x11D175: main (TestMonodomainWithSvi.cpp:19) +==1506776== +==1506776== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506776== at 0xA456A1C: __open_nocancel (open64_nocancel.c:39) +==1506776== by 0xA3DABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506776== by 0x9D6B822: ??? +==1506776== by 0x9D6B96F: ??? +==1506776== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506776== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506776== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506776== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506776== by 0xBB4B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506776== by 0xBAE4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506776== by 0xA7DBD38: PetscInitialize (pinit.c:924) +==1506776== by 0x9D37153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506776== by 0x9D371A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506776== by 0x123842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506776== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506776== by 0x121416: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506776== by 0x1212B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506776== by 0x12194D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506776== by 0x11D175: main (TestMonodomainWithSvi.cpp:19) +==1506776== +==1506776== Open file descriptor 115: +==1506776== +==1506776== +==1506776== Open file descriptor 112: +==1506776== +==1506776== +==1506776== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainWithSvi_valgrind.txt +==1506776== +==1506776== +==1506776== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506776== +==1506776== +==1506776== +==1506776== HEAP SUMMARY: +==1506776== in use at exit: 995,990 bytes in 13,919 blocks +==1506776== total heap usage: 3,767,514 allocs, 3,753,595 frees, 2,016,835,891 bytes allocated +==1506776== +==1506776== LEAK SUMMARY: +==1506776== definitely lost: 0 bytes in 0 blocks +==1506776== indirectly lost: 0 bytes in 0 blocks +==1506776== possibly lost: 0 bytes in 0 blocks +==1506776== still reachable: 24 bytes in 2 blocks +==1506776== suppressed: 995,966 bytes in 13,917 blocks +==1506776== Reachable blocks (those to which a pointer was found) are not shown. +==1506776== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506776== +==1506776== For lists of detected and suppressed errors, rerun with: -s +==1506776== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 78 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestMonodomainWithTimeAdaptivity_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMonodomainWithTimeAdaptivity_valgrind.txt new file mode 100644 index 0000000000..4b3bcf328a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMonodomainWithTimeAdaptivity_valgrind.txt @@ -0,0 +1,73 @@ +==1506782== Memcheck, a memory error detector +==1506782== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506782== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506782== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainWithTimeAdaptivity -malloc_debug -malloc_dump -memory_info +==1506782== Parent PID: 1488630 +==1506782== +==1506782== +==1506782== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506782== Open file descriptor 12: +==1506782== at 0xB87807D: pipe (pipe.c:29) +==1506782== by 0x13F9607D: ??? +==1506782== by 0xF7514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506782== by 0xB166418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506782== by 0xB0FFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506782== by 0x9DD0D38: PetscInitialize (pinit.c:924) +==1506782== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506782== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506782== by 0x127824: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506782== by 0x121AED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506782== by 0x124B6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506782== by 0x124A0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506782== by 0x1250A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506782== by 0x11FF15: main (TestMonodomainWithTimeAdaptivity.cpp:19) +==1506782== +==1506782== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506782== at 0xB87CA1C: __open_nocancel (open64_nocancel.c:39) +==1506782== by 0xB800BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506782== by 0xB05A822: ??? +==1506782== by 0xB05A96F: ??? +==1506782== by 0xF7F66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506782== by 0xF7F6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506782== by 0xF7AC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506782== by 0xF7512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506782== by 0xB166418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506782== by 0xB0FFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506782== by 0x9DD0D38: PetscInitialize (pinit.c:924) +==1506782== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506782== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506782== by 0x127824: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506782== by 0x121AED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506782== by 0x124B6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506782== by 0x124A0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506782== by 0x1250A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506782== by 0x11FF15: main (TestMonodomainWithTimeAdaptivity.cpp:19) +==1506782== +==1506782== Open file descriptor 115: +==1506782== +==1506782== +==1506782== Open file descriptor 112: +==1506782== +==1506782== +==1506782== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainWithTimeAdaptivity_valgrind.txt +==1506782== +==1506782== +==1506782== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506782== +==1506782== +==1506782== +==1506782== HEAP SUMMARY: +==1506782== in use at exit: 995,990 bytes in 13,919 blocks +==1506782== total heap usage: 1,157,602 allocs, 1,143,683 frees, 1,633,723,537 bytes allocated +==1506782== +==1506782== LEAK SUMMARY: +==1506782== definitely lost: 0 bytes in 0 blocks +==1506782== indirectly lost: 0 bytes in 0 blocks +==1506782== possibly lost: 0 bytes in 0 blocks +==1506782== still reachable: 24 bytes in 2 blocks +==1506782== suppressed: 995,966 bytes in 13,917 blocks +==1506782== Reachable blocks (those to which a pointer was found) are not shown. +==1506782== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506782== +==1506782== For lists of detected and suppressed errors, rerun with: -s +==1506782== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 45 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestMoreMechanics_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMoreMechanics_valgrind.txt new file mode 100644 index 0000000000..5a56091ab7 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMoreMechanics_valgrind.txt @@ -0,0 +1,73 @@ +==1489729== Memcheck, a memory error detector +==1489729== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489729== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489729== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMoreMechanics -malloc_debug -malloc_dump -memory_info +==1489729== Parent PID: 1488630 +==1489729== +==1489729== +==1489729== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489729== Open file descriptor 12: +==1489729== at 0x82D707D: pipe (pipe.c:29) +==1489729== by 0x102C707D: ??? +==1489729== by 0xC15C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489729== by 0x893E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489729== by 0x88D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489729== by 0x6899D38: PetscInitialize (pinit.c:924) +==1489729== by 0x6771153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489729== by 0x67711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489729== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489729== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489729== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489729== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489729== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489729== by 0x135775: main (TestMoreMechanics.cpp:19) +==1489729== +==1489729== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489729== at 0x82DBA1C: __open_nocancel (open64_nocancel.c:39) +==1489729== by 0x825FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489729== by 0x7B23822: ??? +==1489729== by 0x7B2396F: ??? +==1489729== by 0xC2016DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489729== by 0xC201938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489729== by 0xC1B7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489729== by 0xC15C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489729== by 0x893E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489729== by 0x88D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489729== by 0x6899D38: PetscInitialize (pinit.c:924) +==1489729== by 0x6771153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489729== by 0x67711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489729== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489729== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489729== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489729== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489729== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489729== by 0x135775: main (TestMoreMechanics.cpp:19) +==1489729== +==1489729== Open file descriptor 115: +==1489729== +==1489729== +==1489729== Open file descriptor 112: +==1489729== +==1489729== +==1489729== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMoreMechanics_valgrind.txt +==1489729== +==1489729== +==1489729== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489729== +==1489729== +==1489729== +==1489729== HEAP SUMMARY: +==1489729== in use at exit: 995,446 bytes in 13,909 blocks +==1489729== total heap usage: 388,883 allocs, 374,974 frees, 1,673,206,672 bytes allocated +==1489729== +==1489729== LEAK SUMMARY: +==1489729== definitely lost: 0 bytes in 0 blocks +==1489729== indirectly lost: 0 bytes in 0 blocks +==1489729== possibly lost: 0 bytes in 0 blocks +==1489729== still reachable: 24 bytes in 2 blocks +==1489729== suppressed: 995,422 bytes in 13,907 blocks +==1489729== Reachable blocks (those to which a pointer was found) are not shown. +==1489729== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489729== +==1489729== For lists of detected and suppressed errors, rerun with: -s +==1489729== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2024-02-21_13-45-57/TestMultiLobeAirwayGenerator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMultiLobeAirwayGenerator_valgrind.txt new file mode 100644 index 0000000000..9cbbfa2eee --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMultiLobeAirwayGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==1504895== Memcheck, a memory error detector +==1504895== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504895== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504895== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMultiLobeAirwayGenerator -malloc_debug -malloc_dump -memory_info +==1504895== Parent PID: 1488630 +==1504895== +==1504895== +==1504895== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504895== Open file descriptor 12: +==1504895== at 0x899D07D: pipe (pipe.c:29) +==1504895== by 0x1041307D: ??? +==1504895== by 0xBD1F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504895== by 0x77A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504895== by 0x773AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504895== by 0x640BD38: PetscInitialize (pinit.c:924) +==1504895== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504895== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504895== by 0x11A3B7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504895== by 0x11592D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504895== by 0x118434: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504895== by 0x1182D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504895== by 0x11896B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504895== by 0x113D55: main (TestMultiLobeAirwayGenerator.cpp:19) +==1504895== +==1504895== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504895== at 0x89A1A1C: __open_nocancel (open64_nocancel.c:39) +==1504895== by 0x8925BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504895== by 0x7695822: ??? +==1504895== by 0x769596F: ??? +==1504895== by 0xBDC46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504895== by 0xBDC4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504895== by 0xBD7A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504895== by 0xBD1F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504895== by 0x77A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504895== by 0x773AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504895== by 0x640BD38: PetscInitialize (pinit.c:924) +==1504895== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504895== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504895== by 0x11A3B7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504895== by 0x11592D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504895== by 0x118434: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504895== by 0x1182D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504895== by 0x11896B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504895== by 0x113D55: main (TestMultiLobeAirwayGenerator.cpp:19) +==1504895== +==1504895== Open file descriptor 115: +==1504895== +==1504895== +==1504895== Open file descriptor 112: +==1504895== +==1504895== +==1504895== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMultiLobeAirwayGenerator_valgrind.txt +==1504895== +==1504895== +==1504895== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504895== +==1504895== +==1504895== +==1504895== HEAP SUMMARY: +==1504895== in use at exit: 995,553 bytes in 13,913 blocks +==1504895== total heap usage: 188,200 allocs, 174,287 frees, 1,652,601,958 bytes allocated +==1504895== +==1504895== LEAK SUMMARY: +==1504895== definitely lost: 0 bytes in 0 blocks +==1504895== indirectly lost: 0 bytes in 0 blocks +==1504895== possibly lost: 0 bytes in 0 blocks +==1504895== still reachable: 24 bytes in 2 blocks +==1504895== suppressed: 995,529 bytes in 13,911 blocks +==1504895== Reachable blocks (those to which a pointer was found) are not shown. +==1504895== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504895== +==1504895== For lists of detected and suppressed errors, rerun with: -s +==1504895== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestMutableMeshRemesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMutableMeshRemesh_valgrind.txt new file mode 100644 index 0000000000..0b1fc0dcf1 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMutableMeshRemesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489028== Memcheck, a memory error detector +==1489028== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489028== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489028== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableMeshRemesh -malloc_debug -malloc_dump -memory_info +==1489028== Parent PID: 1488630 +==1489028== +==1489028== +==1489028== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489028== Open file descriptor 12: +==1489028== at 0x68C407D: pipe (pipe.c:29) +==1489028== by 0xFD3507D: ??? +==1489028== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489028== by 0x7F10418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489028== by 0x7EA9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489028== by 0x6BA0D38: PetscInitialize (pinit.c:924) +==1489028== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489028== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489028== by 0x1241D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489028== by 0x11F1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489028== by 0x121F40: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489028== by 0x121DE0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489028== by 0x122477: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489028== by 0x11D615: main (TestMutableMeshRemesh.cpp:19) +==1489028== +==1489028== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489028== at 0x68C8A1C: __open_nocancel (open64_nocancel.c:39) +==1489028== by 0x684CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489028== by 0x61F7822: ??? +==1489028== by 0x61F796F: ??? +==1489028== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489028== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489028== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489028== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489028== by 0x7F10418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489028== by 0x7EA9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489028== by 0x6BA0D38: PetscInitialize (pinit.c:924) +==1489028== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489028== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489028== by 0x1241D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489028== by 0x11F1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489028== by 0x121F40: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489028== by 0x121DE0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489028== by 0x122477: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489028== by 0x11D615: main (TestMutableMeshRemesh.cpp:19) +==1489028== +==1489028== Open file descriptor 115: +==1489028== +==1489028== +==1489028== Open file descriptor 112: +==1489028== +==1489028== +==1489028== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableMeshRemesh_valgrind.txt +==1489028== +==1489028== +==1489028== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489028== +==1489028== +==1489028== +==1489028== HEAP SUMMARY: +==1489028== in use at exit: 995,457 bytes in 13,913 blocks +==1489028== total heap usage: 276,570 allocs, 262,657 frees, 1,586,065,037 bytes allocated +==1489028== +==1489028== LEAK SUMMARY: +==1489028== definitely lost: 0 bytes in 0 blocks +==1489028== indirectly lost: 0 bytes in 0 blocks +==1489028== possibly lost: 0 bytes in 0 blocks +==1489028== still reachable: 24 bytes in 2 blocks +==1489028== suppressed: 995,433 bytes in 13,911 blocks +==1489028== Reachable blocks (those to which a pointer was found) are not shown. +==1489028== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489028== +==1489028== For lists of detected and suppressed errors, rerun with: -s +==1489028== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestMutableMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMutableMesh_valgrind.txt new file mode 100644 index 0000000000..eefcfb8647 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMutableMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489027== Memcheck, a memory error detector +==1489027== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489027== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489027== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableMesh -malloc_debug -malloc_dump -memory_info +==1489027== Parent PID: 1488630 +==1489027== +==1489027== +==1489027== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489027== Open file descriptor 12: +==1489027== at 0x690607D: pipe (pipe.c:29) +==1489027== by 0xFD3507D: ??? +==1489027== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489027== by 0x7F10418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489027== by 0x7EA9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489027== by 0x6BA0D38: PetscInitialize (pinit.c:924) +==1489027== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489027== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489027== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489027== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489027== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489027== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489027== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489027== by 0x12C225: main (TestMutableMesh.cpp:19) +==1489027== +==1489027== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489027== at 0x690AA1C: __open_nocancel (open64_nocancel.c:39) +==1489027== by 0x688EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489027== by 0x61F7822: ??? +==1489027== by 0x61F796F: ??? +==1489027== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489027== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489027== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489027== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489027== by 0x7F10418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489027== by 0x7EA9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489027== by 0x6BA0D38: PetscInitialize (pinit.c:924) +==1489027== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489027== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489027== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489027== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489027== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489027== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489027== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489027== by 0x12C225: main (TestMutableMesh.cpp:19) +==1489027== +==1489027== Open file descriptor 115: +==1489027== +==1489027== +==1489027== Open file descriptor 112: +==1489027== +==1489027== +==1489027== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableMesh_valgrind.txt +==1489027== +==1489027== +==1489027== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489027== +==1489027== +==1489027== +==1489027== HEAP SUMMARY: +==1489027== in use at exit: 995,457 bytes in 13,913 blocks +==1489027== total heap usage: 718,441 allocs, 704,528 frees, 1,601,521,012 bytes allocated +==1489027== +==1489027== LEAK SUMMARY: +==1489027== definitely lost: 0 bytes in 0 blocks +==1489027== indirectly lost: 0 bytes in 0 blocks +==1489027== possibly lost: 0 bytes in 0 blocks +==1489027== still reachable: 24 bytes in 2 blocks +==1489027== suppressed: 995,433 bytes in 13,911 blocks +==1489027== Reachable blocks (those to which a pointer was found) are not shown. +==1489027== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489027== +==1489027== For lists of detected and suppressed errors, rerun with: -s +==1489027== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-02-21_13-45-57/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt new file mode 100644 index 0000000000..0cc2fe2d88 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt @@ -0,0 +1,73 @@ +==1490328== Memcheck, a memory error detector +==1490328== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490328== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490328== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMutableVertexMeshOperationsWithPopulationSrn -malloc_debug -malloc_dump -memory_info +==1490328== Parent PID: 1488630 +==1490328== +==1490328== +==1490328== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490328== Open file descriptor 12: +==1490328== at 0x1002107D: pipe (pipe.c:29) +==1490328== by 0x18A1D07D: ??? +==1490328== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490328== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490328== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490328== by 0xE593D38: PetscInitialize (pinit.c:924) +==1490328== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490328== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490328== by 0x12FA43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490328== by 0x12AAD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490328== by 0x12D2E4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490328== by 0x12D1E0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490328== by 0x12D7F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490328== by 0x1292D5: main (TestMutableVertexMeshOperationsWithPopulationSrn.cpp:18) +==1490328== +==1490328== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490328== at 0x10025A1C: __open_nocancel (open64_nocancel.c:39) +==1490328== by 0xFFA9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490328== by 0xF81D822: ??? +==1490328== by 0xF81D96F: ??? +==1490328== by 0x140296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490328== by 0x14029938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490328== by 0x13FDF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490328== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490328== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490328== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490328== by 0xE593D38: PetscInitialize (pinit.c:924) +==1490328== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490328== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490328== by 0x12FA43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490328== by 0x12AAD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490328== by 0x12D2E4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490328== by 0x12D1E0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490328== by 0x12D7F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490328== by 0x1292D5: main (TestMutableVertexMeshOperationsWithPopulationSrn.cpp:18) +==1490328== +==1490328== Open file descriptor 115: +==1490328== +==1490328== +==1490328== Open file descriptor 112: +==1490328== +==1490328== +==1490328== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt +==1490328== +==1490328== +==1490328== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490328== +==1490328== +==1490328== +==1490328== HEAP SUMMARY: +==1490328== in use at exit: 995,585 bytes in 13,914 blocks +==1490328== total heap usage: 72,924 allocs, 59,010 frees, 1,572,340,174 bytes allocated +==1490328== +==1490328== LEAK SUMMARY: +==1490328== definitely lost: 0 bytes in 0 blocks +==1490328== indirectly lost: 0 bytes in 0 blocks +==1490328== possibly lost: 0 bytes in 0 blocks +==1490328== still reachable: 56 bytes in 3 blocks +==1490328== suppressed: 995,529 bytes in 13,911 blocks +==1490328== Reachable blocks (those to which a pointer was found) are not shown. +==1490328== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490328== +==1490328== For lists of detected and suppressed errors, rerun with: -s +==1490328== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestMutableVertexMeshReMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMutableVertexMeshReMesh_valgrind.txt new file mode 100644 index 0000000000..b75e684bff --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMutableVertexMeshReMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489279== Memcheck, a memory error detector +==1489279== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489279== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489279== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMeshReMesh -malloc_debug -malloc_dump -memory_info +==1489279== Parent PID: 1488630 +==1489279== +==1489279== +==1489279== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489279== Open file descriptor 12: +==1489279== at 0x7DBB07D: pipe (pipe.c:29) +==1489279== by 0xFD3507D: ??? +==1489279== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489279== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489279== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489279== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489279== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489279== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489279== by 0x1B0C07: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489279== by 0x1A87FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489279== by 0x1AC684: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489279== by 0x1AC524: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489279== by 0x1ACBBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489279== by 0x1A6C25: main (TestMutableVertexMeshReMesh.cpp:19) +==1489279== +==1489279== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489279== at 0x7DBFA1C: __open_nocancel (open64_nocancel.c:39) +==1489279== by 0x7D43BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489279== by 0x61F7822: ??? +==1489279== by 0x61F796F: ??? +==1489279== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489279== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489279== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489279== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489279== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489279== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489279== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489279== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489279== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489279== by 0x1B0C07: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489279== by 0x1A87FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489279== by 0x1AC684: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489279== by 0x1AC524: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489279== by 0x1ACBBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489279== by 0x1A6C25: main (TestMutableVertexMeshReMesh.cpp:19) +==1489279== +==1489279== Open file descriptor 115: +==1489279== +==1489279== +==1489279== Open file descriptor 112: +==1489279== +==1489279== +==1489279== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshReMesh_valgrind.txt +==1489279== +==1489279== +==1489279== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489279== +==1489279== +==1489279== +==1489279== HEAP SUMMARY: +==1489279== in use at exit: 998,009 bytes in 13,914 blocks +==1489279== total heap usage: 94,157 allocs, 80,243 frees, 1,573,067,094 bytes allocated +==1489279== +==1489279== LEAK SUMMARY: +==1489279== definitely lost: 0 bytes in 0 blocks +==1489279== indirectly lost: 0 bytes in 0 blocks +==1489279== possibly lost: 0 bytes in 0 blocks +==1489279== still reachable: 2,576 bytes in 3 blocks +==1489279== suppressed: 995,433 bytes in 13,911 blocks +==1489279== Reachable blocks (those to which a pointer was found) are not shown. +==1489279== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489279== +==1489279== For lists of detected and suppressed errors, rerun with: -s +==1489279== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-02-21_13-45-57/TestMutableVertexMeshRosetteMethods_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMutableVertexMeshRosetteMethods_valgrind.txt new file mode 100644 index 0000000000..042a90bec0 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMutableVertexMeshRosetteMethods_valgrind.txt @@ -0,0 +1,73 @@ +==1489280== Memcheck, a memory error detector +==1489280== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489280== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489280== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMeshRosetteMethods -malloc_debug -malloc_dump -memory_info +==1489280== Parent PID: 1488630 +==1489280== +==1489280== +==1489280== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489280== Open file descriptor 12: +==1489280== at 0x7EA407D: pipe (pipe.c:29) +==1489280== by 0xFD3507D: ??? +==1489280== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489280== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489280== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489280== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489280== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489280== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489280== by 0x122CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489280== by 0x11DCDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489280== by 0x120960: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489280== by 0x120800: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489280== by 0x120E97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489280== by 0x11C105: main (TestMutableVertexMeshRosetteMethods.cpp:19) +==1489280== +==1489280== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489280== at 0x7EA8A1C: __open_nocancel (open64_nocancel.c:39) +==1489280== by 0x7E2CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489280== by 0x61F7822: ??? +==1489280== by 0x61F796F: ??? +==1489280== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489280== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489280== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489280== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489280== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489280== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489280== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489280== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489280== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489280== by 0x122CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489280== by 0x11DCDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489280== by 0x120960: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489280== by 0x120800: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489280== by 0x120E97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489280== by 0x11C105: main (TestMutableVertexMeshRosetteMethods.cpp:19) +==1489280== +==1489280== Open file descriptor 115: +==1489280== +==1489280== +==1489280== Open file descriptor 112: +==1489280== +==1489280== +==1489280== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshRosetteMethods_valgrind.txt +==1489280== +==1489280== +==1489280== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489280== +==1489280== +==1489280== +==1489280== HEAP SUMMARY: +==1489280== in use at exit: 998,009 bytes in 13,914 blocks +==1489280== total heap usage: 65,809 allocs, 51,895 frees, 1,571,907,825 bytes allocated +==1489280== +==1489280== LEAK SUMMARY: +==1489280== definitely lost: 0 bytes in 0 blocks +==1489280== indirectly lost: 0 bytes in 0 blocks +==1489280== possibly lost: 0 bytes in 0 blocks +==1489280== still reachable: 2,576 bytes in 3 blocks +==1489280== suppressed: 995,433 bytes in 13,911 blocks +==1489280== Reachable blocks (those to which a pointer was found) are not shown. +==1489280== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489280== +==1489280== For lists of detected and suppressed errors, rerun with: -s +==1489280== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestMutableVertexMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestMutableVertexMesh_valgrind.txt new file mode 100644 index 0000000000..edf0df4fdc --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestMutableVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489260== Memcheck, a memory error detector +==1489260== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489260== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489260== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMesh -malloc_debug -malloc_dump -memory_info +==1489260== Parent PID: 1488630 +==1489260== +==1489260== +==1489260== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489260== Open file descriptor 12: +==1489260== at 0x7DBB07D: pipe (pipe.c:29) +==1489260== by 0xFD3507D: ??? +==1489260== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489260== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489260== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489260== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489260== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489260== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489260== by 0x1B5143: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489260== by 0x1AE9BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489260== by 0x1B27F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489260== by 0x1B2696: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489260== by 0x1B2D2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489260== by 0x1ACDE5: main (TestMutableVertexMesh.cpp:19) +==1489260== +==1489260== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489260== at 0x7DBFA1C: __open_nocancel (open64_nocancel.c:39) +==1489260== by 0x7D43BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489260== by 0x61F7822: ??? +==1489260== by 0x61F796F: ??? +==1489260== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489260== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489260== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489260== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489260== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489260== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489260== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489260== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489260== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489260== by 0x1B5143: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489260== by 0x1AE9BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489260== by 0x1B27F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489260== by 0x1B2696: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489260== by 0x1B2D2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489260== by 0x1ACDE5: main (TestMutableVertexMesh.cpp:19) +==1489260== +==1489260== Open file descriptor 115: +==1489260== +==1489260== +==1489260== Open file descriptor 112: +==1489260== +==1489260== +==1489260== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMesh_valgrind.txt +==1489260== +==1489260== +==1489260== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489260== +==1489260== +==1489260== +==1489260== HEAP SUMMARY: +==1489260== in use at exit: 998,009 bytes in 13,914 blocks +==1489260== total heap usage: 71,205 allocs, 57,291 frees, 1,572,721,765 bytes allocated +==1489260== +==1489260== LEAK SUMMARY: +==1489260== definitely lost: 0 bytes in 0 blocks +==1489260== indirectly lost: 0 bytes in 0 blocks +==1489260== possibly lost: 0 bytes in 0 blocks +==1489260== still reachable: 2,576 bytes in 3 blocks +==1489260== suppressed: 995,433 bytes in 13,911 blocks +==1489260== Reachable blocks (those to which a pointer was found) are not shown. +==1489260== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489260== +==1489260== For lists of detected and suppressed errors, rerun with: -s +==1489260== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestNeumannStimulus_valgrind.txt b/log-files/2024-02-21_13-45-57/TestNeumannStimulus_valgrind.txt new file mode 100644 index 0000000000..b2d9f75830 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestNeumannStimulus_valgrind.txt @@ -0,0 +1,73 @@ +==1506887== Memcheck, a memory error detector +==1506887== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506887== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506887== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestNeumannStimulus -malloc_debug -malloc_dump -memory_info +==1506887== Parent PID: 1488630 +==1506887== +==1506887== +==1506887== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506887== Open file descriptor 12: +==1506887== at 0xA7EF07D: pipe (pipe.c:29) +==1506887== by 0x13F9607D: ??? +==1506887== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506887== by 0xBEEA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506887== by 0xBE83D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506887== by 0xAB78D38: PetscInitialize (pinit.c:924) +==1506887== by 0xA0D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506887== by 0xA0D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506887== by 0x12243C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506887== by 0x11D413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506887== by 0x11F854: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506887== by 0x11F750: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506887== by 0x11FD63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506887== by 0x11BC15: main (TestNeumannStimulus.cpp:18) +==1506887== +==1506887== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506887== at 0xA7F3A1C: __open_nocancel (open64_nocancel.c:39) +==1506887== by 0xA777BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506887== by 0xA108822: ??? +==1506887== by 0xA10896F: ??? +==1506887== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506887== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506887== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506887== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506887== by 0xBEEA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506887== by 0xBE83D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506887== by 0xAB78D38: PetscInitialize (pinit.c:924) +==1506887== by 0xA0D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506887== by 0xA0D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506887== by 0x12243C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506887== by 0x11D413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506887== by 0x11F854: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506887== by 0x11F750: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506887== by 0x11FD63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506887== by 0x11BC15: main (TestNeumannStimulus.cpp:18) +==1506887== +==1506887== Open file descriptor 115: +==1506887== +==1506887== +==1506887== Open file descriptor 112: +==1506887== +==1506887== +==1506887== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNeumannStimulus_valgrind.txt +==1506887== +==1506887== +==1506887== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506887== +==1506887== +==1506887== +==1506887== HEAP SUMMARY: +==1506887== in use at exit: 996,049 bytes in 13,923 blocks +==1506887== total heap usage: 113,187 allocs, 99,264 frees, 1,583,903,025 bytes allocated +==1506887== +==1506887== LEAK SUMMARY: +==1506887== definitely lost: 0 bytes in 0 blocks +==1506887== indirectly lost: 0 bytes in 0 blocks +==1506887== possibly lost: 0 bytes in 0 blocks +==1506887== still reachable: 24 bytes in 2 blocks +==1506887== suppressed: 996,025 bytes in 13,921 blocks +==1506887== Reachable blocks (those to which a pointer was found) are not shown. +==1506887== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506887== +==1506887== For lists of detected and suppressed errors, rerun with: -s +==1506887== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2024-02-21_13-45-57/TestNhsModelWithBackwardSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestNhsModelWithBackwardSolver_valgrind.txt new file mode 100644 index 0000000000..d0b29618f7 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestNhsModelWithBackwardSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1506689== Memcheck, a memory error detector +==1506689== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506689== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506689== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestNhsModelWithBackwardSolver -malloc_debug -malloc_dump -memory_info +==1506689== Parent PID: 1488630 +==1506689== +==1506689== +==1506689== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506689== Open file descriptor 12: +==1506689== at 0x87B307D: pipe (pipe.c:29) +==1506689== by 0x13F9707D: ??? +==1506689== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506689== by 0x9EAE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506689== by 0x9E47D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506689== by 0x8B3ED38: PetscInitialize (pinit.c:924) +==1506689== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506689== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506689== by 0x118B18: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506689== by 0x114093: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506689== by 0x11647E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506689== by 0x116379: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506689== by 0x11698D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506689== by 0x112895: main (TestNhsModelWithBackwardSolver.cpp:18) +==1506689== +==1506689== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506689== at 0x87B7A1C: __open_nocancel (open64_nocancel.c:39) +==1506689== by 0x873BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506689== by 0x8413822: ??? +==1506689== by 0x841396F: ??? +==1506689== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506689== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506689== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506689== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506689== by 0x9EAE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506689== by 0x9E47D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506689== by 0x8B3ED38: PetscInitialize (pinit.c:924) +==1506689== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506689== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506689== by 0x118B18: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506689== by 0x114093: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506689== by 0x11647E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506689== by 0x116379: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506689== by 0x11698D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506689== by 0x112895: main (TestNhsModelWithBackwardSolver.cpp:18) +==1506689== +==1506689== Open file descriptor 115: +==1506689== +==1506689== +==1506689== Open file descriptor 112: +==1506689== +==1506689== +==1506689== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNhsModelWithBackwardSolver_valgrind.txt +==1506689== +==1506689== +==1506689== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506689== +==1506689== +==1506689== +==1506689== HEAP SUMMARY: +==1506689== in use at exit: 995,569 bytes in 13,913 blocks +==1506689== total heap usage: 61,563 allocs, 47,650 frees, 1,571,603,257 bytes allocated +==1506689== +==1506689== LEAK SUMMARY: +==1506689== definitely lost: 0 bytes in 0 blocks +==1506689== indirectly lost: 0 bytes in 0 blocks +==1506689== possibly lost: 0 bytes in 0 blocks +==1506689== still reachable: 24 bytes in 2 blocks +==1506689== suppressed: 995,545 bytes in 13,911 blocks +==1506689== Reachable blocks (those to which a pointer was found) are not shown. +==1506689== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506689== +==1506689== For lists of detected and suppressed errors, rerun with: -s +==1506689== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestNodeAttributes_valgrind.txt b/log-files/2024-02-21_13-45-57/TestNodeAttributes_valgrind.txt new file mode 100644 index 0000000000..ca196e2f48 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestNodeAttributes_valgrind.txt @@ -0,0 +1,73 @@ +==1489072== Memcheck, a memory error detector +==1489072== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489072== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489072== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNodeAttributes -malloc_debug -malloc_dump -memory_info +==1489072== Parent PID: 1488630 +==1489072== +==1489072== +==1489072== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489072== Open file descriptor 12: +==1489072== at 0x65C107D: pipe (pipe.c:29) +==1489072== by 0xFD3207D: ??? +==1489072== by 0xB6794CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489072== by 0x7BCB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489072== by 0x7B64D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489072== by 0x6859D38: PetscInitialize (pinit.c:924) +==1489072== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489072== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489072== by 0x1396D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489072== by 0x134029: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489072== by 0x136E5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489072== by 0x136CFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489072== by 0x137391: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489072== by 0x132445: main (TestNodeAttributes.cpp:19) +==1489072== +==1489072== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489072== at 0x65C5A1C: __open_nocancel (open64_nocancel.c:39) +==1489072== by 0x6549BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489072== by 0x61F7822: ??? +==1489072== by 0x61F796F: ??? +==1489072== by 0xB71E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489072== by 0xB71E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489072== by 0xB6D4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489072== by 0xB6792DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489072== by 0x7BCB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489072== by 0x7B64D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489072== by 0x6859D38: PetscInitialize (pinit.c:924) +==1489072== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489072== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489072== by 0x1396D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489072== by 0x134029: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489072== by 0x136E5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489072== by 0x136CFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489072== by 0x137391: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489072== by 0x132445: main (TestNodeAttributes.cpp:19) +==1489072== +==1489072== Open file descriptor 115: +==1489072== +==1489072== +==1489072== Open file descriptor 112: +==1489072== +==1489072== +==1489072== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeAttributes_valgrind.txt +==1489072== +==1489072== +==1489072== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489072== +==1489072== +==1489072== +==1489072== HEAP SUMMARY: +==1489072== in use at exit: 995,457 bytes in 13,913 blocks +==1489072== total heap usage: 59,984 allocs, 46,071 frees, 1,571,507,664 bytes allocated +==1489072== +==1489072== LEAK SUMMARY: +==1489072== definitely lost: 0 bytes in 0 blocks +==1489072== indirectly lost: 0 bytes in 0 blocks +==1489072== possibly lost: 0 bytes in 0 blocks +==1489072== still reachable: 24 bytes in 2 blocks +==1489072== suppressed: 995,433 bytes in 13,911 blocks +==1489072== Reachable blocks (those to which a pointer was found) are not shown. +==1489072== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489072== +==1489072== For lists of detected and suppressed errors, rerun with: -s +==1489072== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestNodeBasedCellPopulationParallelMethods_valgrind.txt b/log-files/2024-02-21_13-45-57/TestNodeBasedCellPopulationParallelMethods_valgrind.txt new file mode 100644 index 0000000000..2c8439a930 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestNodeBasedCellPopulationParallelMethods_valgrind.txt @@ -0,0 +1,73 @@ +==1490336== Memcheck, a memory error detector +==1490336== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490336== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490336== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationParallelMethods -malloc_debug -malloc_dump -memory_info +==1490336== Parent PID: 1488630 +==1490336== +==1490336== +==1490336== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490336== Open file descriptor 12: +==1490336== at 0xEC5107D: pipe (pipe.c:29) +==1490336== by 0x18A1D07D: ??? +==1490336== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490336== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490336== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490336== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490336== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490336== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490336== by 0x13F4FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490336== by 0x13824D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490336== by 0x13AF0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490336== by 0x13ADAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490336== by 0x13B441: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490336== by 0x136675: main (TestNodeBasedCellPopulationParallelMethods.cpp:19) +==1490336== +==1490336== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490336== at 0xEC55A1C: __open_nocancel (open64_nocancel.c:39) +==1490336== by 0xEBD9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490336== by 0xE49F822: ??? +==1490336== by 0xE49F96F: ??? +==1490336== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490336== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490336== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490336== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490336== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490336== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490336== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490336== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490336== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490336== by 0x13F4FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490336== by 0x13824D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490336== by 0x13AF0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490336== by 0x13ADAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490336== by 0x13B441: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490336== by 0x136675: main (TestNodeBasedCellPopulationParallelMethods.cpp:19) +==1490336== +==1490336== Open file descriptor 115: +==1490336== +==1490336== +==1490336== Open file descriptor 112: +==1490336== +==1490336== +==1490336== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationParallelMethods_valgrind.txt +==1490336== +==1490336== +==1490336== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490336== +==1490336== +==1490336== +==1490336== HEAP SUMMARY: +==1490336== in use at exit: 995,585 bytes in 13,914 blocks +==1490336== total heap usage: 72,364 allocs, 58,450 frees, 1,575,439,549 bytes allocated +==1490336== +==1490336== LEAK SUMMARY: +==1490336== definitely lost: 0 bytes in 0 blocks +==1490336== indirectly lost: 0 bytes in 0 blocks +==1490336== possibly lost: 0 bytes in 0 blocks +==1490336== still reachable: 56 bytes in 3 blocks +==1490336== suppressed: 995,529 bytes in 13,911 blocks +==1490336== Reachable blocks (those to which a pointer was found) are not shown. +==1490336== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490336== +==1490336== For lists of detected and suppressed errors, rerun with: -s +==1490336== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 40) diff --git a/log-files/2024-02-21_13-45-57/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt b/log-files/2024-02-21_13-45-57/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt new file mode 100644 index 0000000000..915398ad5a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt @@ -0,0 +1,73 @@ +==1490343== Memcheck, a memory error detector +==1490343== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490343== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490343== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithBuskeUpdate -malloc_debug -malloc_dump -memory_info +==1490343== Parent PID: 1488630 +==1490343== +==1490343== +==1490343== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490343== Open file descriptor 12: +==1490343== at 0xEBAC07D: pipe (pipe.c:29) +==1490343== by 0x18A1D07D: ??? +==1490343== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490343== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490343== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490343== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490343== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490343== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490343== by 0x2CC5B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490343== by 0x2C3A9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490343== by 0x2C7EB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490343== by 0x2C7DB3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490343== by 0x2C83C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490343== by 0x2C2295: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) +==1490343== +==1490343== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490343== at 0xEBB0A1C: __open_nocancel (open64_nocancel.c:39) +==1490343== by 0xEB34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490343== by 0xE49F822: ??? +==1490343== by 0xE49F96F: ??? +==1490343== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490343== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490343== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490343== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490343== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490343== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490343== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490343== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490343== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490343== by 0x2CC5B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490343== by 0x2C3A9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490343== by 0x2C7EB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490343== by 0x2C7DB3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490343== by 0x2C83C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490343== by 0x2C2295: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) +==1490343== +==1490343== Open file descriptor 115: +==1490343== +==1490343== +==1490343== Open file descriptor 112: +==1490343== +==1490343== +==1490343== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt +==1490343== +==1490343== +==1490343== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490343== +==1490343== +==1490343== +==1490343== HEAP SUMMARY: +==1490343== in use at exit: 995,585 bytes in 13,914 blocks +==1490343== total heap usage: 69,114 allocs, 55,200 frees, 1,573,242,400 bytes allocated +==1490343== +==1490343== LEAK SUMMARY: +==1490343== definitely lost: 0 bytes in 0 blocks +==1490343== indirectly lost: 0 bytes in 0 blocks +==1490343== possibly lost: 0 bytes in 0 blocks +==1490343== still reachable: 56 bytes in 3 blocks +==1490343== suppressed: 995,529 bytes in 13,911 blocks +==1490343== Reachable blocks (those to which a pointer was found) are not shown. +==1490343== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490343== +==1490343== For lists of detected and suppressed errors, rerun with: -s +==1490343== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestNodeBasedCellPopulationWithParticles_valgrind.txt b/log-files/2024-02-21_13-45-57/TestNodeBasedCellPopulationWithParticles_valgrind.txt new file mode 100644 index 0000000000..0090b07ac1 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestNodeBasedCellPopulationWithParticles_valgrind.txt @@ -0,0 +1,73 @@ +==1490350== Memcheck, a memory error detector +==1490350== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490350== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490350== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithParticles -malloc_debug -malloc_dump -memory_info +==1490350== Parent PID: 1488630 +==1490350== +==1490350== +==1490350== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490350== Open file descriptor 12: +==1490350== at 0xEC9507D: pipe (pipe.c:29) +==1490350== by 0x18A1D07D: ??? +==1490350== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490350== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490350== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490350== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490350== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490350== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490350== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490350== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490350== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490350== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490350== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490350== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) +==1490350== +==1490350== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490350== at 0xEC99A1C: __open_nocancel (open64_nocancel.c:39) +==1490350== by 0xEC1DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490350== by 0xE49F822: ??? +==1490350== by 0xE49F96F: ??? +==1490350== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490350== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490350== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490350== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490350== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490350== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490350== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490350== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490350== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490350== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490350== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490350== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490350== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490350== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490350== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) +==1490350== +==1490350== Open file descriptor 115: +==1490350== +==1490350== +==1490350== Open file descriptor 112: +==1490350== +==1490350== +==1490350== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithParticles_valgrind.txt +==1490350== +==1490350== +==1490350== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490350== +==1490350== +==1490350== +==1490350== HEAP SUMMARY: +==1490350== in use at exit: 995,585 bytes in 13,914 blocks +==1490350== total heap usage: 115,715 allocs, 101,801 frees, 1,579,242,423 bytes allocated +==1490350== +==1490350== LEAK SUMMARY: +==1490350== definitely lost: 0 bytes in 0 blocks +==1490350== indirectly lost: 0 bytes in 0 blocks +==1490350== possibly lost: 0 bytes in 0 blocks +==1490350== still reachable: 56 bytes in 3 blocks +==1490350== suppressed: 995,529 bytes in 13,911 blocks +==1490350== Reachable blocks (those to which a pointer was found) are not shown. +==1490350== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490350== +==1490350== For lists of detected and suppressed errors, rerun with: -s +==1490350== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 43) diff --git a/log-files/2024-02-21_13-45-57/TestNodeBasedCellPopulation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestNodeBasedCellPopulation_valgrind.txt new file mode 100644 index 0000000000..d10d7c8015 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestNodeBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==1490335== Memcheck, a memory error detector +==1490335== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490335== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490335== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==1490335== Parent PID: 1488630 +==1490335== +==1490335== +==1490335== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490335== Open file descriptor 12: +==1490335== at 0xEC3D07D: pipe (pipe.c:29) +==1490335== by 0x18A1D07D: ??? +==1490335== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490335== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490335== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490335== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490335== by 0xE4FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490335== by 0xE4FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490335== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490335== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490335== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490335== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490335== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490335== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) +==1490335== +==1490335== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490335== at 0xEC41A1C: __open_nocancel (open64_nocancel.c:39) +==1490335== by 0xEBC5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490335== by 0xE52E822: ??? +==1490335== by 0xE52E96F: ??? +==1490335== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490335== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490335== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490335== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490335== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490335== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490335== by 0xF499D38: PetscInitialize (pinit.c:924) +==1490335== by 0xE4FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490335== by 0xE4FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490335== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490335== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490335== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490335== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490335== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490335== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) +==1490335== +==1490335== Open file descriptor 115: +==1490335== +==1490335== +==1490335== Open file descriptor 112: +==1490335== +==1490335== +==1490335== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt +==1490335== +==1490335== +==1490335== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490335== +==1490335== +==1490335== +==1490335== HEAP SUMMARY: +==1490335== in use at exit: 995,526 bytes in 13,910 blocks +==1490335== total heap usage: 20,204,756 allocs, 20,190,846 frees, 2,796,014,953 bytes allocated +==1490335== +==1490335== LEAK SUMMARY: +==1490335== definitely lost: 0 bytes in 0 blocks +==1490335== indirectly lost: 0 bytes in 0 blocks +==1490335== possibly lost: 0 bytes in 0 blocks +==1490335== still reachable: 56 bytes in 3 blocks +==1490335== suppressed: 995,470 bytes in 13,907 blocks +==1490335== Reachable blocks (those to which a pointer was found) are not shown. +==1490335== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490335== +==1490335== For lists of detected and suppressed errors, rerun with: -s +==1490335== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestNode_valgrind.txt b/log-files/2024-02-21_13-45-57/TestNode_valgrind.txt new file mode 100644 index 0000000000..790b1c0a3b --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestNode_valgrind.txt @@ -0,0 +1,73 @@ +==1489054== Memcheck, a memory error detector +==1489054== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489054== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489054== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNode -malloc_debug -malloc_dump -memory_info +==1489054== Parent PID: 1488630 +==1489054== +==1489054== +==1489054== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489054== Open file descriptor 12: +==1489054== at 0x690607D: pipe (pipe.c:29) +==1489054== by 0xFD3507D: ??? +==1489054== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489054== by 0x7F10418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489054== by 0x7EA9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489054== by 0x6BA0D38: PetscInitialize (pinit.c:924) +==1489054== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489054== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489054== by 0x13DE14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489054== by 0x138509: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489054== by 0x13B556: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489054== by 0x13B3F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489054== by 0x13BA8D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489054== by 0x136925: main (TestNode.cpp:19) +==1489054== +==1489054== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489054== at 0x690AA1C: __open_nocancel (open64_nocancel.c:39) +==1489054== by 0x688EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489054== by 0x61F7822: ??? +==1489054== by 0x61F796F: ??? +==1489054== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489054== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489054== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489054== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489054== by 0x7F10418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489054== by 0x7EA9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489054== by 0x6BA0D38: PetscInitialize (pinit.c:924) +==1489054== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489054== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489054== by 0x13DE14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489054== by 0x138509: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489054== by 0x13B556: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489054== by 0x13B3F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489054== by 0x13BA8D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489054== by 0x136925: main (TestNode.cpp:19) +==1489054== +==1489054== Open file descriptor 115: +==1489054== +==1489054== +==1489054== Open file descriptor 112: +==1489054== +==1489054== +==1489054== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNode_valgrind.txt +==1489054== +==1489054== +==1489054== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489054== +==1489054== +==1489054== +==1489054== HEAP SUMMARY: +==1489054== in use at exit: 995,457 bytes in 13,913 blocks +==1489054== total heap usage: 59,985 allocs, 46,072 frees, 1,571,490,245 bytes allocated +==1489054== +==1489054== LEAK SUMMARY: +==1489054== definitely lost: 0 bytes in 0 blocks +==1489054== indirectly lost: 0 bytes in 0 blocks +==1489054== possibly lost: 0 bytes in 0 blocks +==1489054== still reachable: 24 bytes in 2 blocks +==1489054== suppressed: 995,433 bytes in 13,911 blocks +==1489054== Reachable blocks (those to which a pointer was found) are not shown. +==1489054== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489054== +==1489054== For lists of detected and suppressed errors, rerun with: -s +==1489054== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestNodesOnlyMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestNodesOnlyMesh_valgrind.txt new file mode 100644 index 0000000000..3e70c5a368 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489074== Memcheck, a memory error detector +==1489074== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489074== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489074== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==1489074== Parent PID: 1488630 +==1489074== +==1489074== +==1489074== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489074== Open file descriptor 12: +==1489074== at 0x69ED07D: pipe (pipe.c:29) +==1489074== by 0xFD3507D: ??? +==1489074== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489074== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489074== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489074== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489074== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489074== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489074== by 0x142026: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489074== by 0x13C7DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489074== by 0x13F93C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489074== by 0x13F7DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489074== by 0x13FE73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489074== by 0x13AC05: main (TestNodesOnlyMesh.cpp:19) +==1489074== +==1489074== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489074== at 0x69F1A1C: __open_nocancel (open64_nocancel.c:39) +==1489074== by 0x6975BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489074== by 0x61F7822: ??? +==1489074== by 0x61F796F: ??? +==1489074== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489074== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489074== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489074== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489074== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489074== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489074== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489074== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489074== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489074== by 0x142026: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489074== by 0x13C7DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489074== by 0x13F93C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489074== by 0x13F7DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489074== by 0x13FE73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489074== by 0x13AC05: main (TestNodesOnlyMesh.cpp:19) +==1489074== +==1489074== Open file descriptor 115: +==1489074== +==1489074== +==1489074== Open file descriptor 112: +==1489074== +==1489074== +==1489074== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodesOnlyMesh_valgrind.txt +==1489074== +==1489074== +==1489074== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489074== +==1489074== +==1489074== +==1489074== HEAP SUMMARY: +==1489074== in use at exit: 995,457 bytes in 13,913 blocks +==1489074== total heap usage: 371,973 allocs, 358,060 frees, 1,591,416,207 bytes allocated +==1489074== +==1489074== LEAK SUMMARY: +==1489074== definitely lost: 0 bytes in 0 blocks +==1489074== indirectly lost: 0 bytes in 0 blocks +==1489074== possibly lost: 0 bytes in 0 blocks +==1489074== still reachable: 24 bytes in 2 blocks +==1489074== suppressed: 995,433 bytes in 13,911 blocks +==1489074== Reachable blocks (those to which a pointer was found) are not shown. +==1489074== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489074== +==1489074== For lists of detected and suppressed errors, rerun with: -s +==1489074== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestNonCachedTetrahedralMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestNonCachedTetrahedralMesh_valgrind.txt new file mode 100644 index 0000000000..069bf16a27 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestNonCachedTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489081== Memcheck, a memory error detector +==1489081== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489081== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489081== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNonCachedTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==1489081== Parent PID: 1488630 +==1489081== +==1489081== +==1489081== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489081== Open file descriptor 12: +==1489081== at 0x690607D: pipe (pipe.c:29) +==1489081== by 0xFD3507D: ??? +==1489081== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489081== by 0x7F10418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489081== by 0x7EA9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489081== by 0x6BA0D38: PetscInitialize (pinit.c:924) +==1489081== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489081== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489081== by 0x121954: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489081== by 0x11CD9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489081== by 0x11F7E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489081== by 0x11F682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489081== by 0x11FD19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489081== by 0x11B1C5: main (TestNonCachedTetrahedralMesh.cpp:19) +==1489081== +==1489081== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489081== at 0x690AA1C: __open_nocancel (open64_nocancel.c:39) +==1489081== by 0x688EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489081== by 0x61F7822: ??? +==1489081== by 0x61F796F: ??? +==1489081== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489081== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489081== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489081== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489081== by 0x7F10418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489081== by 0x7EA9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489081== by 0x6BA0D38: PetscInitialize (pinit.c:924) +==1489081== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489081== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489081== by 0x121954: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489081== by 0x11CD9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489081== by 0x11F7E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489081== by 0x11F682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489081== by 0x11FD19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489081== by 0x11B1C5: main (TestNonCachedTetrahedralMesh.cpp:19) +==1489081== +==1489081== Open file descriptor 115: +==1489081== +==1489081== +==1489081== Open file descriptor 112: +==1489081== +==1489081== +==1489081== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonCachedTetrahedralMesh_valgrind.txt +==1489081== +==1489081== +==1489081== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489081== +==1489081== +==1489081== +==1489081== HEAP SUMMARY: +==1489081== in use at exit: 995,398 bytes in 13,909 blocks +==1489081== total heap usage: 16,025,751 allocs, 16,011,842 frees, 3,687,454,379 bytes allocated +==1489081== +==1489081== LEAK SUMMARY: +==1489081== definitely lost: 0 bytes in 0 blocks +==1489081== indirectly lost: 0 bytes in 0 blocks +==1489081== possibly lost: 0 bytes in 0 blocks +==1489081== still reachable: 24 bytes in 2 blocks +==1489081== suppressed: 995,374 bytes in 13,907 blocks +==1489081== Reachable blocks (those to which a pointer was found) are not shown. +==1489081== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489081== +==1489081== For lists of detected and suppressed errors, rerun with: -s +==1489081== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestNonlinearElasticityTools_valgrind.txt b/log-files/2024-02-21_13-45-57/TestNonlinearElasticityTools_valgrind.txt new file mode 100644 index 0000000000..cc6432946e --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestNonlinearElasticityTools_valgrind.txt @@ -0,0 +1,73 @@ +==1489732== Memcheck, a memory error detector +==1489732== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489732== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489732== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestNonlinearElasticityTools -malloc_debug -malloc_dump -memory_info +==1489732== Parent PID: 1488630 +==1489732== +==1489732== +==1489732== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489732== Open file descriptor 12: +==1489732== at 0x6A4407D: pipe (pipe.c:29) +==1489732== by 0x102C707D: ??? +==1489732== by 0xBC4F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489732== by 0x8516418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489732== by 0x84AFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489732== by 0x707BD38: PetscInitialize (pinit.c:924) +==1489732== by 0x6345153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489732== by 0x63451A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489732== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489732== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489732== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489732== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489732== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489732== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) +==1489732== +==1489732== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489732== at 0x6A48A1C: __open_nocancel (open64_nocancel.c:39) +==1489732== by 0x69CCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489732== by 0x6379822: ??? +==1489732== by 0x637996F: ??? +==1489732== by 0xBCF46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489732== by 0xBCF4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489732== by 0xBCAA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489732== by 0xBC4F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489732== by 0x8516418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489732== by 0x84AFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489732== by 0x707BD38: PetscInitialize (pinit.c:924) +==1489732== by 0x6345153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489732== by 0x63451A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489732== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489732== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489732== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489732== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489732== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489732== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) +==1489732== +==1489732== Open file descriptor 115: +==1489732== +==1489732== +==1489732== Open file descriptor 112: +==1489732== +==1489732== +==1489732== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonlinearElasticityTools_valgrind.txt +==1489732== +==1489732== +==1489732== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489732== +==1489732== +==1489732== +==1489732== HEAP SUMMARY: +==1489732== in use at exit: 995,505 bytes in 13,913 blocks +==1489732== total heap usage: 70,272 allocs, 56,359 frees, 1,572,529,738 bytes allocated +==1489732== +==1489732== LEAK SUMMARY: +==1489732== definitely lost: 0 bytes in 0 blocks +==1489732== indirectly lost: 0 bytes in 0 blocks +==1489732== possibly lost: 0 bytes in 0 blocks +==1489732== still reachable: 24 bytes in 2 blocks +==1489732== suppressed: 995,481 bytes in 13,911 blocks +==1489732== Reachable blocks (those to which a pointer was found) are not shown. +==1489732== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489732== +==1489732== For lists of detected and suppressed errors, rerun with: -s +==1489732== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestNonlinearSolvers_valgrind.txt b/log-files/2024-02-21_13-45-57/TestNonlinearSolvers_valgrind.txt new file mode 100644 index 0000000000..f926b7ae4c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestNonlinearSolvers_valgrind.txt @@ -0,0 +1,73 @@ +==1488937== Memcheck, a memory error detector +==1488937== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488937== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488937== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestNonlinearSolvers -malloc_debug -malloc_dump -memory_info +==1488937== Parent PID: 1488630 +==1488937== +==1488937== +==1488937== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488937== Open file descriptor 12: +==1488937== at 0x60C307D: pipe (pipe.c:29) +==1488937== by 0xAF3A07D: ??? +==1488937== by 0x8A4D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488937== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488937== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488937== by 0x4AB1D38: PetscInitialize (pinit.c:924) +==1488937== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488937== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488937== by 0x1143C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488937== by 0x10FB69: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488937== by 0x1123C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488937== by 0x112266: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488937== by 0x1128FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488937== by 0x10D915: main (TestNonlinearSolvers.cpp:19) +==1488937== +==1488937== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488937== at 0x60C7A1C: __open_nocancel (open64_nocancel.c:39) +==1488937== by 0x604BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488937== by 0x5D3B822: ??? +==1488937== by 0x5D3B96F: ??? +==1488937== by 0x8AF46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488937== by 0x8AF4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488937== by 0x8AAA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488937== by 0x8A4D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488937== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488937== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488937== by 0x4AB1D38: PetscInitialize (pinit.c:924) +==1488937== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488937== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488937== by 0x1143C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488937== by 0x10FB69: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488937== by 0x1123C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488937== by 0x112266: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488937== by 0x1128FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488937== by 0x10D915: main (TestNonlinearSolvers.cpp:19) +==1488937== +==1488937== Open file descriptor 115: +==1488937== +==1488937== +==1488937== Open file descriptor 112: +==1488937== +==1488937== +==1488937== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonlinearSolvers_valgrind.txt +==1488937== +==1488937== +==1488937== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488937== +==1488937== +==1488937== +==1488937== HEAP SUMMARY: +==1488937== in use at exit: 995,089 bytes in 13,913 blocks +==1488937== total heap usage: 114,081 allocs, 100,168 frees, 1,581,635,628 bytes allocated +==1488937== +==1488937== LEAK SUMMARY: +==1488937== definitely lost: 0 bytes in 0 blocks +==1488937== indirectly lost: 0 bytes in 0 blocks +==1488937== possibly lost: 0 bytes in 0 blocks +==1488937== still reachable: 24 bytes in 2 blocks +==1488937== suppressed: 995,065 bytes in 13,911 blocks +==1488937== Reachable blocks (those to which a pointer was found) are not shown. +==1488937== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488937== +==1488937== For lists of detected and suppressed errors, rerun with: -s +==1488937== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestNumericFileComparison_valgrind.txt b/log-files/2024-02-21_13-45-57/TestNumericFileComparison_valgrind.txt new file mode 100644 index 0000000000..e697bcde4a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestNumericFileComparison_valgrind.txt @@ -0,0 +1,73 @@ +==1488779== Memcheck, a memory error detector +==1488779== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488779== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488779== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestNumericFileComparison -malloc_debug -malloc_dump -memory_info +==1488779== Parent PID: 1488630 +==1488779== +==1488779== +==1488779== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488779== Open file descriptor 12: +==1488779== at 0x4CB407D: pipe (pipe.c:29) +==1488779== by 0xAEA607D: ??? +==1488779== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488779== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488779== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488779== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488779== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488779== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488779== by 0x115A5C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488779== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488779== by 0x112A1A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488779== by 0x112915: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488779== by 0x112F29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488779== by 0x10EA95: main (TestNumericFileComparison.cpp:18) +==1488779== +==1488779== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488779== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==1488779== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488779== by 0x492E822: ??? +==1488779== by 0x492E96F: ??? +==1488779== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488779== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488779== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488779== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488779== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488779== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488779== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488779== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488779== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488779== by 0x115A5C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488779== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488779== by 0x112A1A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488779== by 0x112915: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488779== by 0x112F29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488779== by 0x10EA95: main (TestNumericFileComparison.cpp:18) +==1488779== +==1488779== Open file descriptor 115: +==1488779== +==1488779== +==1488779== Open file descriptor 112: +==1488779== +==1488779== +==1488779== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNumericFileComparison_valgrind.txt +==1488779== +==1488779== +==1488779== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488779== +==1488779== +==1488779== +==1488779== HEAP SUMMARY: +==1488779== in use at exit: 995,073 bytes in 13,913 blocks +==1488779== total heap usage: 58,382 allocs, 44,469 frees, 1,571,543,944 bytes allocated +==1488779== +==1488779== LEAK SUMMARY: +==1488779== definitely lost: 0 bytes in 0 blocks +==1488779== indirectly lost: 0 bytes in 0 blocks +==1488779== possibly lost: 0 bytes in 0 blocks +==1488779== still reachable: 24 bytes in 2 blocks +==1488779== suppressed: 995,049 bytes in 13,911 blocks +==1488779== Reachable blocks (those to which a pointer was found) are not shown. +==1488779== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488779== +==1488779== For lists of detected and suppressed errors, rerun with: -s +==1488779== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestNumericalMethods_valgrind.txt b/log-files/2024-02-21_13-45-57/TestNumericalMethods_valgrind.txt new file mode 100644 index 0000000000..aea59c2745 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestNumericalMethods_valgrind.txt @@ -0,0 +1,73 @@ +==1490491== Memcheck, a memory error detector +==1490491== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490491== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490491== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNumericalMethods -malloc_debug -malloc_dump -memory_info +==1490491== Parent PID: 1488630 +==1490491== +==1490491== +==1490491== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490491== Open file descriptor 12: +==1490491== at 0xEC5107D: pipe (pipe.c:29) +==1490491== by 0x18A1D07D: ??? +==1490491== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490491== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490491== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490491== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490491== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490491== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490491== by 0x13A648: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490491== by 0x13504D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490491== by 0x137DD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490491== by 0x137C74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490491== by 0x13830B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490491== by 0x133475: main (TestNumericalMethods.cpp:19) +==1490491== +==1490491== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490491== at 0xEC55A1C: __open_nocancel (open64_nocancel.c:39) +==1490491== by 0xEBD9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490491== by 0xE49F822: ??? +==1490491== by 0xE49F96F: ??? +==1490491== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490491== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490491== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490491== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490491== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490491== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490491== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490491== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490491== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490491== by 0x13A648: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490491== by 0x13504D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490491== by 0x137DD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490491== by 0x137C74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490491== by 0x13830B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490491== by 0x133475: main (TestNumericalMethods.cpp:19) +==1490491== +==1490491== Open file descriptor 115: +==1490491== +==1490491== +==1490491== Open file descriptor 112: +==1490491== +==1490491== +==1490491== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNumericalMethods_valgrind.txt +==1490491== +==1490491== +==1490491== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490491== +==1490491== +==1490491== +==1490491== HEAP SUMMARY: +==1490491== in use at exit: 995,585 bytes in 13,914 blocks +==1490491== total heap usage: 81,308 allocs, 67,394 frees, 1,574,889,592 bytes allocated +==1490491== +==1490491== LEAK SUMMARY: +==1490491== definitely lost: 0 bytes in 0 blocks +==1490491== indirectly lost: 0 bytes in 0 blocks +==1490491== possibly lost: 0 bytes in 0 blocks +==1490491== still reachable: 56 bytes in 3 blocks +==1490491== suppressed: 995,529 bytes in 13,911 blocks +==1490491== Reachable blocks (those to which a pointer was found) are not shown. +==1490491== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490491== +==1490491== For lists of detected and suppressed errors, rerun with: -s +==1490491== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestObjectCommunicator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestObjectCommunicator_valgrind.txt new file mode 100644 index 0000000000..7ed7d87f54 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestObjectCommunicator_valgrind.txt @@ -0,0 +1,73 @@ +==1488786== Memcheck, a memory error detector +==1488786== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488786== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488786== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestObjectCommunicator -malloc_debug -malloc_dump -memory_info +==1488786== Parent PID: 1488630 +==1488786== +==1488786== +==1488786== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488786== Open file descriptor 12: +==1488786== at 0x61AD07D: pipe (pipe.c:29) +==1488786== by 0xAEA607D: ??? +==1488786== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488786== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488786== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488786== by 0x4A8AD38: PetscInitialize (pinit.c:924) +==1488786== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488786== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488786== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488786== by 0x11C051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488786== by 0x11F5CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488786== by 0x11F46C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488786== by 0x11FB03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488786== by 0x11A325: main (TestObjectCommunicator.cpp:19) +==1488786== +==1488786== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488786== at 0x61B1A1C: __open_nocancel (open64_nocancel.c:39) +==1488786== by 0x6135BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488786== by 0x492E822: ??? +==1488786== by 0x492E96F: ??? +==1488786== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488786== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488786== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488786== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488786== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488786== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488786== by 0x4A8AD38: PetscInitialize (pinit.c:924) +==1488786== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488786== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488786== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488786== by 0x11C051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488786== by 0x11F5CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488786== by 0x11F46C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488786== by 0x11FB03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488786== by 0x11A325: main (TestObjectCommunicator.cpp:19) +==1488786== +==1488786== Open file descriptor 115: +==1488786== +==1488786== +==1488786== Open file descriptor 112: +==1488786== +==1488786== +==1488786== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestObjectCommunicator_valgrind.txt +==1488786== +==1488786== +==1488786== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488786== +==1488786== +==1488786== +==1488786== HEAP SUMMARY: +==1488786== in use at exit: 995,073 bytes in 13,913 blocks +==1488786== total heap usage: 57,602 allocs, 43,689 frees, 1,571,239,423 bytes allocated +==1488786== +==1488786== LEAK SUMMARY: +==1488786== definitely lost: 0 bytes in 0 blocks +==1488786== indirectly lost: 0 bytes in 0 blocks +==1488786== possibly lost: 0 bytes in 0 blocks +==1488786== still reachable: 24 bytes in 2 blocks +==1488786== suppressed: 995,049 bytes in 13,911 blocks +==1488786== Reachable blocks (those to which a pointer was found) are not shown. +==1488786== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488786== +==1488786== For lists of detected and suppressed errors, rerun with: -s +==1488786== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestObsoleteBoxCollection_valgrind.txt b/log-files/2024-02-21_13-45-57/TestObsoleteBoxCollection_valgrind.txt new file mode 100644 index 0000000000..fcb9bd0e48 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestObsoleteBoxCollection_valgrind.txt @@ -0,0 +1,73 @@ +==1489211== Memcheck, a memory error detector +==1489211== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489211== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489211== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestObsoleteBoxCollection -malloc_debug -malloc_dump -memory_info +==1489211== Parent PID: 1488630 +==1489211== +==1489211== +==1489211== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489211== Open file descriptor 12: +==1489211== at 0x69AB07D: pipe (pipe.c:29) +==1489211== by 0xFD3507D: ??? +==1489211== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489211== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489211== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489211== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489211== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489211== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489211== by 0x153352: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489211== by 0x14DF8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489211== by 0x150FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489211== by 0x150E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489211== by 0x1514D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489211== by 0x14C3B5: main (TestObsoleteBoxCollection.cpp:19) +==1489211== +==1489211== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489211== at 0x69AFA1C: __open_nocancel (open64_nocancel.c:39) +==1489211== by 0x6933BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489211== by 0x61F7822: ??? +==1489211== by 0x61F796F: ??? +==1489211== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489211== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489211== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489211== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489211== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489211== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489211== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489211== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489211== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489211== by 0x153352: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489211== by 0x14DF8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489211== by 0x150FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489211== by 0x150E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489211== by 0x1514D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489211== by 0x14C3B5: main (TestObsoleteBoxCollection.cpp:19) +==1489211== +==1489211== Open file descriptor 115: +==1489211== +==1489211== +==1489211== Open file descriptor 112: +==1489211== +==1489211== +==1489211== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestObsoleteBoxCollection_valgrind.txt +==1489211== +==1489211== +==1489211== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489211== +==1489211== +==1489211== +==1489211== HEAP SUMMARY: +==1489211== in use at exit: 995,457 bytes in 13,913 blocks +==1489211== total heap usage: 289,439 allocs, 275,526 frees, 1,680,281,035 bytes allocated +==1489211== +==1489211== LEAK SUMMARY: +==1489211== definitely lost: 0 bytes in 0 blocks +==1489211== indirectly lost: 0 bytes in 0 blocks +==1489211== possibly lost: 0 bytes in 0 blocks +==1489211== still reachable: 24 bytes in 2 blocks +==1489211== suppressed: 995,433 bytes in 13,911 blocks +==1489211== Reachable blocks (those to which a pointer was found) are not shown. +==1489211== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489211== +==1489211== For lists of detected and suppressed errors, rerun with: -s +==1489211== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt new file mode 100644 index 0000000000..f2f03895db --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==1504193== Memcheck, a memory error detector +==1504193== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504193== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504193== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info +==1504193== Parent PID: 1488630 +==1504193== +==1504193== +==1504193== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504193== Open file descriptor 12: +==1504193== at 0x1029D07D: pipe (pipe.c:29) +==1504193== by 0x1A6E107D: ??? +==1504193== by 0x148854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504193== by 0xFBA5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504193== by 0xFB3ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504193== by 0xE835D38: PetscInitialize (pinit.c:924) +==1504193== by 0xE6A5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504193== by 0xE6A51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504193== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504193== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504193== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504193== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504193== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504193== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) +==1504193== +==1504193== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504193== at 0x102A1A1C: __open_nocancel (open64_nocancel.c:39) +==1504193== by 0x10225BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504193== by 0xE6D9822: ??? +==1504193== by 0xE6D996F: ??? +==1504193== by 0x1492A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504193== by 0x1492A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504193== by 0x148E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504193== by 0x148852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504193== by 0xFBA5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504193== by 0xFB3ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504193== by 0xE835D38: PetscInitialize (pinit.c:924) +==1504193== by 0xE6A5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504193== by 0xE6A51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504193== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504193== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504193== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504193== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504193== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504193== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) +==1504193== +==1504193== Open file descriptor 115: +==1504193== +==1504193== +==1504193== Open file descriptor 112: +==1504193== +==1504193== +==1504193== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt +==1504193== +==1504193== +==1504193== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504193== +==1504193== +==1504193== +==1504193== HEAP SUMMARY: +==1504193== in use at exit: 995,665 bytes in 13,915 blocks +==1504193== total heap usage: 874,133 allocs, 860,218 frees, 1,693,943,974 bytes allocated +==1504193== +==1504193== LEAK SUMMARY: +==1504193== definitely lost: 0 bytes in 0 blocks +==1504193== indirectly lost: 0 bytes in 0 blocks +==1504193== possibly lost: 0 bytes in 0 blocks +==1504193== still reachable: 120 bytes in 4 blocks +==1504193== suppressed: 995,545 bytes in 13,911 blocks +==1504193== Reachable blocks (those to which a pointer was found) are not shown. +==1504193== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504193== +==1504193== For lists of detected and suppressed errors, rerun with: -s +==1504193== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestOdeBasedCellCycleModels_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOdeBasedCellCycleModels_valgrind.txt new file mode 100644 index 0000000000..2d280518e1 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOdeBasedCellCycleModels_valgrind.txt @@ -0,0 +1,73 @@ +==1489846== Memcheck, a memory error detector +==1489846== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489846== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489846== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeBasedCellCycleModels -malloc_debug -malloc_dump -memory_info +==1489846== Parent PID: 1488630 +==1489846== +==1489846== +==1489846== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489846== Open file descriptor 12: +==1489846== at 0xE69807D: pipe (pipe.c:29) +==1489846== by 0x18A1D07D: ??? +==1489846== by 0x12FC34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489846== by 0xE2E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489846== by 0xE27ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489846== by 0xCF75D38: PetscInitialize (pinit.c:924) +==1489846== by 0xCDE5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489846== by 0xCDE51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489846== by 0x1361D7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489846== by 0x12EF6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489846== by 0x131C2A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489846== by 0x131ACA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489846== by 0x132161: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489846== by 0x12B8A5: main (TestOdeBasedCellCycleModels.cpp:19) +==1489846== +==1489846== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489846== at 0xE69CA1C: __open_nocancel (open64_nocancel.c:39) +==1489846== by 0xE620BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489846== by 0xCE19822: ??? +==1489846== by 0xCE1996F: ??? +==1489846== by 0x130686DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489846== by 0x13068938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489846== by 0x1301E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489846== by 0x12FC32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489846== by 0xE2E5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489846== by 0xE27ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489846== by 0xCF75D38: PetscInitialize (pinit.c:924) +==1489846== by 0xCDE5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489846== by 0xCDE51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489846== by 0x1361D7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489846== by 0x12EF6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489846== by 0x131C2A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489846== by 0x131ACA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489846== by 0x132161: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489846== by 0x12B8A5: main (TestOdeBasedCellCycleModels.cpp:19) +==1489846== +==1489846== Open file descriptor 115: +==1489846== +==1489846== +==1489846== Open file descriptor 112: +==1489846== +==1489846== +==1489846== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModels_valgrind.txt +==1489846== +==1489846== +==1489846== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489846== +==1489846== +==1489846== +==1489846== HEAP SUMMARY: +==1489846== in use at exit: 995,542 bytes in 13,911 blocks +==1489846== total heap usage: 4,191,426 allocs, 4,177,515 frees, 2,003,107,329 bytes allocated +==1489846== +==1489846== LEAK SUMMARY: +==1489846== definitely lost: 0 bytes in 0 blocks +==1489846== indirectly lost: 0 bytes in 0 blocks +==1489846== possibly lost: 0 bytes in 0 blocks +==1489846== still reachable: 72 bytes in 4 blocks +==1489846== suppressed: 995,470 bytes in 13,907 blocks +==1489846== Reachable blocks (those to which a pointer was found) are not shown. +==1489846== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489846== +==1489846== For lists of detected and suppressed errors, rerun with: -s +==1489846== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestOdeBasedSrnModels_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOdeBasedSrnModels_valgrind.txt new file mode 100644 index 0000000000..b342b4cacb --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOdeBasedSrnModels_valgrind.txt @@ -0,0 +1,73 @@ +==1489853== Memcheck, a memory error detector +==1489853== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489853== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489853== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeBasedSrnModels -malloc_debug -malloc_dump -memory_info +==1489853== Parent PID: 1488630 +==1489853== +==1489853== +==1489853== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489853== Open file descriptor 12: +==1489853== at 0xE45307D: pipe (pipe.c:29) +==1489853== by 0x18A1D07D: ??? +==1489853== by 0x12F724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489853== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489853== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489853== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1489853== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489853== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489853== by 0x12E3B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489853== by 0x1272FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489853== by 0x129E8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489853== by 0x129D2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489853== by 0x12A3C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489853== by 0x125725: main (TestOdeBasedSrnModels.cpp:19) +==1489853== +==1489853== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489853== at 0xE457A1C: __open_nocancel (open64_nocancel.c:39) +==1489853== by 0xE3DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489853== by 0xCBD4822: ??? +==1489853== by 0xCBD496F: ??? +==1489853== by 0x130176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489853== by 0x13017938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489853== by 0x12FCD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489853== by 0x12F722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489853== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489853== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489853== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1489853== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489853== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489853== by 0x12E3B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489853== by 0x1272FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489853== by 0x129E8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489853== by 0x129D2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489853== by 0x12A3C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489853== by 0x125725: main (TestOdeBasedSrnModels.cpp:19) +==1489853== +==1489853== Open file descriptor 115: +==1489853== +==1489853== +==1489853== Open file descriptor 112: +==1489853== +==1489853== +==1489853== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedSrnModels_valgrind.txt +==1489853== +==1489853== +==1489853== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489853== +==1489853== +==1489853== +==1489853== HEAP SUMMARY: +==1489853== in use at exit: 995,601 bytes in 13,915 blocks +==1489853== total heap usage: 69,356 allocs, 55,441 frees, 1,572,502,170 bytes allocated +==1489853== +==1489853== LEAK SUMMARY: +==1489853== definitely lost: 0 bytes in 0 blocks +==1489853== indirectly lost: 0 bytes in 0 blocks +==1489853== possibly lost: 0 bytes in 0 blocks +==1489853== still reachable: 72 bytes in 4 blocks +==1489853== suppressed: 995,529 bytes in 13,911 blocks +==1489853== Reachable blocks (those to which a pointer was found) are not shown. +==1489853== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489853== +==1489853== For lists of detected and suppressed errors, rerun with: -s +==1489853== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestOdeLinearSystemSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOdeLinearSystemSolver_valgrind.txt new file mode 100644 index 0000000000..0464b5e9ac --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOdeLinearSystemSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1490022== Memcheck, a memory error detector +==1490022== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490022== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490022== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeLinearSystemSolver -malloc_debug -malloc_dump -memory_info +==1490022== Parent PID: 1488630 +==1490022== +==1490022== +==1490022== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490022== Open file descriptor 12: +==1490022== at 0xE36907D: pipe (pipe.c:29) +==1490022== by 0x18A1E07D: ??? +==1490022== by 0x1408B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490022== by 0x104C6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490022== by 0x1045FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490022== by 0xCD59D38: PetscInitialize (pinit.c:924) +==1490022== by 0xCC31153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490022== by 0xCC311A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490022== by 0x112010: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490022== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490022== by 0x1100A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490022== by 0x10FFA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490022== by 0x1105B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490022== by 0x10C555: main (TestOdeLinearSystemSolver.cpp:18) +==1490022== +==1490022== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490022== at 0xE36DA1C: __open_nocancel (open64_nocancel.c:39) +==1490022== by 0xE2F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490022== by 0xDFE3822: ??? +==1490022== by 0xDFE396F: ??? +==1490022== by 0x133C86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490022== by 0x133C8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490022== by 0x1337E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490022== by 0x1408B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490022== by 0x104C6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490022== by 0x1045FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490022== by 0xCD59D38: PetscInitialize (pinit.c:924) +==1490022== by 0xCC31153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490022== by 0xCC311A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490022== by 0x112010: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490022== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490022== by 0x1100A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490022== by 0x10FFA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490022== by 0x1105B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490022== by 0x10C555: main (TestOdeLinearSystemSolver.cpp:18) +==1490022== +==1490022== Open file descriptor 115: +==1490022== +==1490022== +==1490022== Open file descriptor 112: +==1490022== +==1490022== +==1490022== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeLinearSystemSolver_valgrind.txt +==1490022== +==1490022== +==1490022== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490022== +==1490022== +==1490022== +==1490022== HEAP SUMMARY: +==1490022== in use at exit: 995,553 bytes in 13,913 blocks +==1490022== total heap usage: 67,630 allocs, 53,717 frees, 1,572,656,448 bytes allocated +==1490022== +==1490022== LEAK SUMMARY: +==1490022== definitely lost: 0 bytes in 0 blocks +==1490022== indirectly lost: 0 bytes in 0 blocks +==1490022== possibly lost: 0 bytes in 0 blocks +==1490022== still reachable: 24 bytes in 2 blocks +==1490022== suppressed: 995,529 bytes in 13,911 blocks +==1490022== Reachable blocks (those to which a pointer was found) are not shown. +==1490022== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490022== +==1490022== For lists of detected and suppressed errors, rerun with: -s +==1490022== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestOffLatticeCryptProjectionSimulation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOffLatticeCryptProjectionSimulation_valgrind.txt new file mode 100644 index 0000000000..b0db67f83f --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOffLatticeCryptProjectionSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==1504380== Memcheck, a memory error detector +==1504380== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504380== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504380== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOffLatticeCryptProjectionSimulation -malloc_debug -malloc_dump -memory_info +==1504380== Parent PID: 1488630 +==1504380== +==1504380== +==1504380== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504380== Open file descriptor 12: +==1504380== at 0x119C807D: pipe (pipe.c:29) +==1504380== by 0x1A6DF07D: ??? +==1504380== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504380== by 0x111E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504380== by 0x11182D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504380== by 0xFE53D38: PetscInitialize (pinit.c:924) +==1504380== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504380== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504380== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504380== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504380== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504380== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504380== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504380== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) +==1504380== +==1504380== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504380== at 0x119CCA1C: __open_nocancel (open64_nocancel.c:39) +==1504380== by 0x11950BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504380== by 0x110DD822: ??? +==1504380== by 0x110DD96F: ??? +==1504380== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504380== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504380== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504380== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504380== by 0x111E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504380== by 0x11182D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504380== by 0xFE53D38: PetscInitialize (pinit.c:924) +==1504380== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504380== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504380== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504380== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504380== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504380== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504380== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504380== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) +==1504380== +==1504380== Open file descriptor 115: +==1504380== +==1504380== +==1504380== Open file descriptor 112: +==1504380== +==1504380== +==1504380== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeCryptProjectionSimulation_valgrind.txt +==1504380== +==1504380== +==1504380== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504380== +==1504380== +==1504380== +==1504380== HEAP SUMMARY: +==1504380== in use at exit: 995,601 bytes in 13,914 blocks +==1504380== total heap usage: 1,356,688 allocs, 1,342,774 frees, 1,686,254,439 bytes allocated +==1504380== +==1504380== LEAK SUMMARY: +==1504380== definitely lost: 0 bytes in 0 blocks +==1504380== indirectly lost: 0 bytes in 0 blocks +==1504380== possibly lost: 0 bytes in 0 blocks +==1504380== still reachable: 56 bytes in 3 blocks +==1504380== suppressed: 995,545 bytes in 13,911 blocks +==1504380== Reachable blocks (those to which a pointer was found) are not shown. +==1504380== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504380== +==1504380== For lists of detected and suppressed errors, rerun with: -s +==1504380== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestOffLatticeSimulation3d_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOffLatticeSimulation3d_valgrind.txt new file mode 100644 index 0000000000..69a921dfef --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOffLatticeSimulation3d_valgrind.txt @@ -0,0 +1,73 @@ +==1490495== Memcheck, a memory error detector +==1490495== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490495== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490495== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info +==1490495== Parent PID: 1488630 +==1490495== +==1490495== +==1490495== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490495== Open file descriptor 12: +==1490495== at 0x1014A07D: pipe (pipe.c:29) +==1490495== by 0x18A1D07D: ??? +==1490495== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490495== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490495== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490495== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1490495== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490495== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490495== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490495== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490495== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490495== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490495== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490495== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) +==1490495== +==1490495== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490495== at 0x1014EA1C: __open_nocancel (open64_nocancel.c:39) +==1490495== by 0x100D2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490495== by 0xE49F822: ??? +==1490495== by 0xE49F96F: ??? +==1490495== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490495== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490495== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490495== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490495== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490495== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490495== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1490495== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490495== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490495== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490495== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490495== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490495== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490495== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490495== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) +==1490495== +==1490495== Open file descriptor 115: +==1490495== +==1490495== +==1490495== Open file descriptor 112: +==1490495== +==1490495== +==1490495== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt +==1490495== +==1490495== +==1490495== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490495== +==1490495== +==1490495== +==1490495== HEAP SUMMARY: +==1490495== in use at exit: 995,585 bytes in 13,914 blocks +==1490495== total heap usage: 866,956 allocs, 853,042 frees, 1,737,099,366 bytes allocated +==1490495== +==1490495== LEAK SUMMARY: +==1490495== definitely lost: 0 bytes in 0 blocks +==1490495== indirectly lost: 0 bytes in 0 blocks +==1490495== possibly lost: 0 bytes in 0 blocks +==1490495== still reachable: 56 bytes in 3 blocks +==1490495== suppressed: 995,529 bytes in 13,911 blocks +==1490495== Reachable blocks (those to which a pointer was found) are not shown. +==1490495== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490495== +==1490495== For lists of detected and suppressed errors, rerun with: -s +==1490495== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestOffLatticeSimulationWithBuskeForces_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOffLatticeSimulationWithBuskeForces_valgrind.txt new file mode 100644 index 0000000000..dbf9f32cbf --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOffLatticeSimulationWithBuskeForces_valgrind.txt @@ -0,0 +1,73 @@ +==1490517== Memcheck, a memory error detector +==1490517== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490517== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490517== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithBuskeForces -malloc_debug -malloc_dump -memory_info +==1490517== Parent PID: 1488630 +==1490517== +==1490517== +==1490517== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490517== Open file descriptor 12: +==1490517== at 0xEC5107D: pipe (pipe.c:29) +==1490517== by 0x18A1D07D: ??? +==1490517== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490517== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490517== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490517== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490517== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490517== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490517== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490517== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490517== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490517== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490517== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490517== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) +==1490517== +==1490517== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490517== at 0xEC55A1C: __open_nocancel (open64_nocancel.c:39) +==1490517== by 0xEBD9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490517== by 0xE49F822: ??? +==1490517== by 0xE49F96F: ??? +==1490517== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490517== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490517== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490517== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490517== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490517== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490517== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490517== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490517== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490517== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490517== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490517== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490517== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490517== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490517== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) +==1490517== +==1490517== Open file descriptor 115: +==1490517== +==1490517== +==1490517== Open file descriptor 112: +==1490517== +==1490517== +==1490517== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithBuskeForces_valgrind.txt +==1490517== +==1490517== +==1490517== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490517== +==1490517== +==1490517== +==1490517== HEAP SUMMARY: +==1490517== in use at exit: 995,526 bytes in 13,910 blocks +==1490517== total heap usage: 3,605,667 allocs, 3,591,757 frees, 4,714,561,694 bytes allocated +==1490517== +==1490517== LEAK SUMMARY: +==1490517== definitely lost: 0 bytes in 0 blocks +==1490517== indirectly lost: 0 bytes in 0 blocks +==1490517== possibly lost: 0 bytes in 0 blocks +==1490517== still reachable: 56 bytes in 3 blocks +==1490517== suppressed: 995,470 bytes in 13,907 blocks +==1490517== Reachable blocks (those to which a pointer was found) are not shown. +==1490517== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490517== +==1490517== For lists of detected and suppressed errors, rerun with: -s +==1490517== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-02-21_13-45-57/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt new file mode 100644 index 0000000000..35e2c3d986 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt @@ -0,0 +1,73 @@ +==1490608== Memcheck, a memory error detector +==1490608== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490608== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490608== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info +==1490608== Parent PID: 1488630 +==1490608== +==1490608== +==1490608== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490608== Open file descriptor 12: +==1490608== at 0xEC5107D: pipe (pipe.c:29) +==1490608== by 0x18A1D07D: ??? +==1490608== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490608== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490608== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490608== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490608== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490608== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490608== by 0x13285A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490608== by 0x12D813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490608== by 0x12FFCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490608== by 0x12FEC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490608== by 0x1304DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490608== by 0x12C015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) +==1490608== +==1490608== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490608== at 0xEC55A1C: __open_nocancel (open64_nocancel.c:39) +==1490608== by 0xEBD9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490608== by 0xE49F822: ??? +==1490608== by 0xE49F96F: ??? +==1490608== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490608== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490608== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490608== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490608== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490608== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490608== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490608== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490608== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490608== by 0x13285A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490608== by 0x12D813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490608== by 0x12FFCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490608== by 0x12FEC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490608== by 0x1304DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490608== by 0x12C015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) +==1490608== +==1490608== Open file descriptor 115: +==1490608== +==1490608== +==1490608== Open file descriptor 112: +==1490608== +==1490608== +==1490608== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt +==1490608== +==1490608== +==1490608== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490608== +==1490608== +==1490608== +==1490608== HEAP SUMMARY: +==1490608== in use at exit: 995,526 bytes in 13,910 blocks +==1490608== total heap usage: 6,688,505 allocs, 6,674,595 frees, 9,229,125,087 bytes allocated +==1490608== +==1490608== LEAK SUMMARY: +==1490608== definitely lost: 0 bytes in 0 blocks +==1490608== indirectly lost: 0 bytes in 0 blocks +==1490608== possibly lost: 0 bytes in 0 blocks +==1490608== still reachable: 56 bytes in 3 blocks +==1490608== suppressed: 995,470 bytes in 13,907 blocks +==1490608== Reachable blocks (those to which a pointer was found) are not shown. +==1490608== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490608== +==1490608== For lists of detected and suppressed errors, rerun with: -s +==1490608== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt new file mode 100644 index 0000000000..50e126fafa --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==1490607== Memcheck, a memory error detector +==1490607== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490607== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490607== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==1490607== Parent PID: 1488630 +==1490607== +==1490607== +==1490607== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490607== Open file descriptor 12: +==1490607== at 0xEC9507D: pipe (pipe.c:29) +==1490607== by 0x18A1D07D: ??? +==1490607== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490607== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490607== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490607== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490607== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490607== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490607== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490607== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490607== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490607== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490607== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490607== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) +==1490607== +==1490607== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490607== at 0xEC99A1C: __open_nocancel (open64_nocancel.c:39) +==1490607== by 0xEC1DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490607== by 0xE49F822: ??? +==1490607== by 0xE49F96F: ??? +==1490607== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490607== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490607== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490607== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490607== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490607== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490607== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490607== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490607== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490607== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490607== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490607== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490607== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490607== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490607== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) +==1490607== +==1490607== Open file descriptor 115: +==1490607== +==1490607== +==1490607== Open file descriptor 112: +==1490607== +==1490607== +==1490607== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt +==1490607== +==1490607== +==1490607== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490607== +==1490607== +==1490607== +==1490607== HEAP SUMMARY: +==1490607== in use at exit: 995,558 bytes in 13,911 blocks +==1490607== total heap usage: 17,984,834 allocs, 17,970,923 frees, 30,304,634,766 bytes allocated +==1490607== +==1490607== LEAK SUMMARY: +==1490607== definitely lost: 0 bytes in 0 blocks +==1490607== indirectly lost: 0 bytes in 0 blocks +==1490607== possibly lost: 0 bytes in 0 blocks +==1490607== still reachable: 88 bytes in 4 blocks +==1490607== suppressed: 995,470 bytes in 13,907 blocks +==1490607== Reachable blocks (those to which a pointer was found) are not shown. +==1490607== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490607== +==1490607== For lists of detected and suppressed errors, rerun with: -s +==1490607== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestOffLatticeSimulationWithPdes_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOffLatticeSimulationWithPdes_valgrind.txt new file mode 100644 index 0000000000..f03f00aa17 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOffLatticeSimulationWithPdes_valgrind.txt @@ -0,0 +1,73 @@ +==1490653== Memcheck, a memory error detector +==1490653== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490653== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490653== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info +==1490653== Parent PID: 1488630 +==1490653== +==1490653== +==1490653== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490653== Open file descriptor 12: +==1490653== at 0xF03207D: pipe (pipe.c:29) +==1490653== by 0x18A1D07D: ??? +==1490653== by 0x140294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490653== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490653== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490653== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490653== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490653== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490653== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490653== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490653== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490653== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490653== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490653== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) +==1490653== +==1490653== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490653== at 0xF036A1C: __open_nocancel (open64_nocancel.c:39) +==1490653== by 0xEFBABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490653== by 0xE83C822: ??? +==1490653== by 0xE83C96F: ??? +==1490653== by 0x140CE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490653== by 0x140CE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490653== by 0x14084922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490653== by 0x140292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490653== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490653== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490653== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490653== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490653== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490653== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490653== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490653== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490653== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490653== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490653== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) +==1490653== +==1490653== Open file descriptor 115: +==1490653== +==1490653== +==1490653== Open file descriptor 112: +==1490653== +==1490653== +==1490653== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt +==1490653== +==1490653== +==1490653== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490653== +==1490653== +==1490653== +==1490653== HEAP SUMMARY: +==1490653== in use at exit: 995,526 bytes in 13,910 blocks +==1490653== total heap usage: 7,498,826 allocs, 7,484,916 frees, 2,876,003,101 bytes allocated +==1490653== +==1490653== LEAK SUMMARY: +==1490653== definitely lost: 0 bytes in 0 blocks +==1490653== indirectly lost: 0 bytes in 0 blocks +==1490653== possibly lost: 0 bytes in 0 blocks +==1490653== still reachable: 56 bytes in 3 blocks +==1490653== suppressed: 995,470 bytes in 13,907 blocks +==1490653== Reachable blocks (those to which a pointer was found) are not shown. +==1490653== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490653== +==1490653== For lists of detected and suppressed errors, rerun with: -s +==1490653== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 0000000000..22a8ae60ea --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==1490775== Memcheck, a memory error detector +==1490775== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490775== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490775== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==1490775== Parent PID: 1488630 +==1490775== +==1490775== +==1490775== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490775== Open file descriptor 12: +==1490775== at 0x1014A07D: pipe (pipe.c:29) +==1490775== by 0x18A1D07D: ??? +==1490775== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490775== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490775== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490775== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1490775== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490775== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490775== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490775== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490775== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490775== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490775== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490775== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) +==1490775== +==1490775== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490775== at 0x1014EA1C: __open_nocancel (open64_nocancel.c:39) +==1490775== by 0x100D2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490775== by 0xE49F822: ??? +==1490775== by 0xE49F96F: ??? +==1490775== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490775== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490775== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490775== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490775== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490775== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490775== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1490775== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490775== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490775== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490775== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490775== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490775== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490775== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490775== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) +==1490775== +==1490775== Open file descriptor 115: +==1490775== +==1490775== +==1490775== Open file descriptor 112: +==1490775== +==1490775== +==1490775== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt +==1490775== +==1490775== +==1490775== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490775== +==1490775== +==1490775== +==1490775== HEAP SUMMARY: +==1490775== in use at exit: 995,526 bytes in 13,910 blocks +==1490775== total heap usage: 9,761,685 allocs, 9,747,775 frees, 2,834,810,757 bytes allocated +==1490775== +==1490775== LEAK SUMMARY: +==1490775== definitely lost: 0 bytes in 0 blocks +==1490775== indirectly lost: 0 bytes in 0 blocks +==1490775== possibly lost: 0 bytes in 0 blocks +==1490775== still reachable: 56 bytes in 3 blocks +==1490775== suppressed: 995,470 bytes in 13,907 blocks +==1490775== Reachable blocks (those to which a pointer was found) are not shown. +==1490775== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490775== +==1490775== For lists of detected and suppressed errors, rerun with: -s +==1490775== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestOffLatticeSimulation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOffLatticeSimulation_valgrind.txt new file mode 100644 index 0000000000..3d5bad583a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOffLatticeSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==1490494== Memcheck, a memory error detector +==1490494== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490494== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490494== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation -malloc_debug -malloc_dump -memory_info +==1490494== Parent PID: 1488630 +==1490494== +==1490494== +==1490494== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490494== Open file descriptor 12: +==1490494== at 0xEC9507D: pipe (pipe.c:29) +==1490494== by 0x18A1D07D: ??? +==1490494== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490494== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490494== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490494== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490494== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490494== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490494== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490494== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490494== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490494== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490494== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490494== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) +==1490494== +==1490494== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490494== at 0xEC99A1C: __open_nocancel (open64_nocancel.c:39) +==1490494== by 0xEC1DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490494== by 0xE49F822: ??? +==1490494== by 0xE49F96F: ??? +==1490494== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490494== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490494== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490494== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490494== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490494== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490494== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490494== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490494== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490494== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490494== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490494== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490494== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490494== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490494== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) +==1490494== +==1490494== Open file descriptor 115: +==1490494== +==1490494== +==1490494== Open file descriptor 112: +==1490494== +==1490494== +==1490494== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation_valgrind.txt +==1490494== +==1490494== +==1490494== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490494== +==1490494== +==1490494== +==1490494== HEAP SUMMARY: +==1490494== in use at exit: 995,526 bytes in 13,910 blocks +==1490494== total heap usage: 12,862,011 allocs, 12,848,101 frees, 4,094,357,433 bytes allocated +==1490494== +==1490494== LEAK SUMMARY: +==1490494== definitely lost: 0 bytes in 0 blocks +==1490494== indirectly lost: 0 bytes in 0 blocks +==1490494== possibly lost: 0 bytes in 0 blocks +==1490494== still reachable: 56 bytes in 3 blocks +==1490494== suppressed: 995,470 bytes in 13,907 blocks +==1490494== Reachable blocks (those to which a pointer was found) are not shown. +==1490494== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490494== +==1490494== For lists of detected and suppressed errors, rerun with: -s +==1490494== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt new file mode 100644 index 0000000000..06d2790f11 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==1490917== Memcheck, a memory error detector +==1490917== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490917== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490917== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==1490917== Parent PID: 1488630 +==1490917== +==1490917== +==1490917== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490917== Open file descriptor 12: +==1490917== at 0xF11107D: pipe (pipe.c:29) +==1490917== by 0x18A1D07D: ??? +==1490917== by 0x141484CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490917== by 0x10D6E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490917== by 0x10D07D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490917== by 0xF9FED38: PetscInitialize (pinit.c:924) +==1490917== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490917== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490917== by 0x1D3486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490917== by 0x1CCDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490917== by 0x1D0554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490917== by 0x1D03F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490917== by 0x1D0A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490917== by 0x1CB1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) +==1490917== +==1490917== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490917== at 0xF115A1C: __open_nocancel (open64_nocancel.c:39) +==1490917== by 0xF099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490917== by 0xE49F822: ??? +==1490917== by 0xE49F96F: ??? +==1490917== by 0x141ED6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490917== by 0x141ED938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490917== by 0x141A3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490917== by 0x141482DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490917== by 0x10D6E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490917== by 0x10D07D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490917== by 0xF9FED38: PetscInitialize (pinit.c:924) +==1490917== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490917== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490917== by 0x1D3486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490917== by 0x1CCDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490917== by 0x1D0554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490917== by 0x1D03F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490917== by 0x1D0A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490917== by 0x1CB1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) +==1490917== +==1490917== Open file descriptor 115: +==1490917== +==1490917== +==1490917== Open file descriptor 112: +==1490917== +==1490917== +==1490917== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt +==1490917== +==1490917== +==1490917== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490917== +==1490917== +==1490917== +==1490917== HEAP SUMMARY: +==1490917== in use at exit: 995,526 bytes in 13,910 blocks +==1490917== total heap usage: 7,108,534 allocs, 7,094,624 frees, 8,315,232,542 bytes allocated +==1490917== +==1490917== LEAK SUMMARY: +==1490917== definitely lost: 0 bytes in 0 blocks +==1490917== indirectly lost: 0 bytes in 0 blocks +==1490917== possibly lost: 0 bytes in 0 blocks +==1490917== still reachable: 56 bytes in 3 blocks +==1490917== suppressed: 995,470 bytes in 13,907 blocks +==1490917== Reachable blocks (those to which a pointer was found) are not shown. +==1490917== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490917== +==1490917== For lists of detected and suppressed errors, rerun with: -s +==1490917== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestOnLatticeSimulationWithPdes_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOnLatticeSimulationWithPdes_valgrind.txt new file mode 100644 index 0000000000..bb2d62e049 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOnLatticeSimulationWithPdes_valgrind.txt @@ -0,0 +1,73 @@ +==1494106== Memcheck, a memory error detector +==1494106== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1494106== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1494106== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info +==1494106== Parent PID: 1488630 +==1494106== +==1494106== +==1494106== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1494106== Open file descriptor 12: +==1494106== at 0xEFF007D: pipe (pipe.c:29) +==1494106== by 0x18A1D07D: ??? +==1494106== by 0x140294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1494106== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1494106== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1494106== by 0xF582D38: PetscInitialize (pinit.c:924) +==1494106== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1494106== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1494106== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1494106== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1494106== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1494106== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1494106== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1494106== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) +==1494106== +==1494106== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1494106== at 0xEFF4A1C: __open_nocancel (open64_nocancel.c:39) +==1494106== by 0xEF78BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1494106== by 0xE83C822: ??? +==1494106== by 0xE83C96F: ??? +==1494106== by 0x140CE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1494106== by 0x140CE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1494106== by 0x14084922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1494106== by 0x140292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1494106== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1494106== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1494106== by 0xF582D38: PetscInitialize (pinit.c:924) +==1494106== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1494106== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1494106== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1494106== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1494106== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1494106== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1494106== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1494106== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) +==1494106== +==1494106== Open file descriptor 115: +==1494106== +==1494106== +==1494106== Open file descriptor 112: +==1494106== +==1494106== +==1494106== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt +==1494106== +==1494106== +==1494106== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1494106== +==1494106== +==1494106== +==1494106== HEAP SUMMARY: +==1494106== in use at exit: 995,526 bytes in 13,910 blocks +==1494106== total heap usage: 2,368,941 allocs, 2,355,031 frees, 2,009,380,053 bytes allocated +==1494106== +==1494106== LEAK SUMMARY: +==1494106== definitely lost: 0 bytes in 0 blocks +==1494106== indirectly lost: 0 bytes in 0 blocks +==1494106== possibly lost: 0 bytes in 0 blocks +==1494106== still reachable: 56 bytes in 3 blocks +==1494106== suppressed: 995,470 bytes in 13,907 blocks +==1494106== Reachable blocks (those to which a pointer was found) are not shown. +==1494106== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1494106== +==1494106== For lists of detected and suppressed errors, rerun with: -s +==1494106== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt new file mode 100644 index 0000000000..04073f47a2 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==1495439== Memcheck, a memory error detector +==1495439== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1495439== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1495439== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==1495439== Parent PID: 1488630 +==1495439== +==1495439== +==1495439== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1495439== Open file descriptor 12: +==1495439== at 0xEC9507D: pipe (pipe.c:29) +==1495439== by 0x18A1D07D: ??? +==1495439== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1495439== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1495439== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1495439== by 0xF582D38: PetscInitialize (pinit.c:924) +==1495439== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1495439== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1495439== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1495439== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1495439== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1495439== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1495439== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1495439== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) +==1495439== +==1495439== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1495439== at 0xEC99A1C: __open_nocancel (open64_nocancel.c:39) +==1495439== by 0xEC1DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1495439== by 0xE49F822: ??? +==1495439== by 0xE49F96F: ??? +==1495439== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1495439== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1495439== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1495439== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1495439== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1495439== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1495439== by 0xF582D38: PetscInitialize (pinit.c:924) +==1495439== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1495439== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1495439== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1495439== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1495439== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1495439== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1495439== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1495439== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) +==1495439== +==1495439== Open file descriptor 115: +==1495439== +==1495439== +==1495439== Open file descriptor 112: +==1495439== +==1495439== +==1495439== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt +==1495439== +==1495439== +==1495439== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1495439== +==1495439== +==1495439== +==1495439== HEAP SUMMARY: +==1495439== in use at exit: 995,542 bytes in 13,911 blocks +==1495439== total heap usage: 11,694,275 allocs, 11,680,364 frees, 2,441,574,551 bytes allocated +==1495439== +==1495439== LEAK SUMMARY: +==1495439== definitely lost: 0 bytes in 0 blocks +==1495439== indirectly lost: 0 bytes in 0 blocks +==1495439== possibly lost: 0 bytes in 0 blocks +==1495439== still reachable: 72 bytes in 4 blocks +==1495439== suppressed: 995,470 bytes in 13,907 blocks +==1495439== Reachable blocks (those to which a pointer was found) are not shown. +==1495439== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1495439== +==1495439== For lists of detected and suppressed errors, rerun with: -s +==1495439== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestOperatorSplittingMonodomainSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOperatorSplittingMonodomainSolver_valgrind.txt new file mode 100644 index 0000000000..72959703ae --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOperatorSplittingMonodomainSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1506784== Memcheck, a memory error detector +==1506784== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506784== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506784== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestOperatorSplittingMonodomainSolver -malloc_debug -malloc_dump -memory_info +==1506784== Parent PID: 1488630 +==1506784== +==1506784== +==1506784== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506784== Open file descriptor 12: +==1506784== at 0xA3C307D: pipe (pipe.c:29) +==1506784== by 0x13F9607D: ??? +==1506784== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506784== by 0xBABC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506784== by 0xBA55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506784== by 0xA74CD38: PetscInitialize (pinit.c:924) +==1506784== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506784== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506784== by 0x1199B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506784== by 0x115213: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506784== by 0x1175A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506784== by 0x11749F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506784== by 0x117AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506784== by 0x113A15: main (TestOperatorSplittingMonodomainSolver.cpp:18) +==1506784== +==1506784== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506784== at 0xA3C7A1C: __open_nocancel (open64_nocancel.c:39) +==1506784== by 0xA34BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506784== by 0x9CDC822: ??? +==1506784== by 0x9CDC96F: ??? +==1506784== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506784== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506784== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506784== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506784== by 0xBABC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506784== by 0xBA55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506784== by 0xA74CD38: PetscInitialize (pinit.c:924) +==1506784== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506784== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506784== by 0x1199B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506784== by 0x115213: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506784== by 0x1175A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506784== by 0x11749F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506784== by 0x117AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506784== by 0x113A15: main (TestOperatorSplittingMonodomainSolver.cpp:18) +==1506784== +==1506784== Open file descriptor 115: +==1506784== +==1506784== +==1506784== Open file descriptor 112: +==1506784== +==1506784== +==1506784== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOperatorSplittingMonodomainSolver_valgrind.txt +==1506784== +==1506784== +==1506784== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506784== +==1506784== +==1506784== +==1506784== HEAP SUMMARY: +==1506784== in use at exit: 996,049 bytes in 13,923 blocks +==1506784== total heap usage: 94,226 allocs, 80,303 frees, 1,727,787,447 bytes allocated +==1506784== +==1506784== LEAK SUMMARY: +==1506784== definitely lost: 0 bytes in 0 blocks +==1506784== indirectly lost: 0 bytes in 0 blocks +==1506784== possibly lost: 0 bytes in 0 blocks +==1506784== still reachable: 24 bytes in 2 blocks +==1506784== suppressed: 996,025 bytes in 13,921 blocks +==1506784== Reachable blocks (those to which a pointer was found) are not shown. +==1506784== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506784== +==1506784== For lists of detected and suppressed errors, rerun with: -s +==1506784== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2024-02-21_13-45-57/TestOutputDirectoryFifoQueue_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOutputDirectoryFifoQueue_valgrind.txt new file mode 100644 index 0000000000..c188f53518 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOutputDirectoryFifoQueue_valgrind.txt @@ -0,0 +1,73 @@ +==1488787== Memcheck, a memory error detector +==1488787== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488787== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488787== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestOutputDirectoryFifoQueue -malloc_debug -malloc_dump -memory_info +==1488787== Parent PID: 1488630 +==1488787== +==1488787== +==1488787== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488787== Open file descriptor 12: +==1488787== at 0x4CB407D: pipe (pipe.c:29) +==1488787== by 0xAEA607D: ??? +==1488787== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488787== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488787== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488787== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488787== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488787== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488787== by 0x114118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488787== by 0x10FF93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488787== by 0x1121E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488787== by 0x1120DD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488787== by 0x1126F1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488787== by 0x10E795: main (TestOutputDirectoryFifoQueue.cpp:18) +==1488787== +==1488787== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488787== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==1488787== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488787== by 0x492E822: ??? +==1488787== by 0x492E96F: ??? +==1488787== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488787== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488787== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488787== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488787== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488787== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488787== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488787== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488787== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488787== by 0x114118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488787== by 0x10FF93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488787== by 0x1121E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488787== by 0x1120DD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488787== by 0x1126F1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488787== by 0x10E795: main (TestOutputDirectoryFifoQueue.cpp:18) +==1488787== +==1488787== Open file descriptor 115: +==1488787== +==1488787== +==1488787== Open file descriptor 112: +==1488787== +==1488787== +==1488787== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOutputDirectoryFifoQueue_valgrind.txt +==1488787== +==1488787== +==1488787== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488787== +==1488787== +==1488787== +==1488787== HEAP SUMMARY: +==1488787== in use at exit: 995,073 bytes in 13,913 blocks +==1488787== total heap usage: 58,379 allocs, 44,466 frees, 1,571,998,045 bytes allocated +==1488787== +==1488787== LEAK SUMMARY: +==1488787== definitely lost: 0 bytes in 0 blocks +==1488787== indirectly lost: 0 bytes in 0 blocks +==1488787== possibly lost: 0 bytes in 0 blocks +==1488787== still reachable: 24 bytes in 2 blocks +==1488787== suppressed: 995,049 bytes in 13,911 blocks +==1488787== Reachable blocks (those to which a pointer was found) are not shown. +==1488787== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488787== +==1488787== For lists of detected and suppressed errors, rerun with: -s +==1488787== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestOutputFileHandler_valgrind.txt b/log-files/2024-02-21_13-45-57/TestOutputFileHandler_valgrind.txt new file mode 100644 index 0000000000..c2a9656e3a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestOutputFileHandler_valgrind.txt @@ -0,0 +1,73 @@ +==1488788== Memcheck, a memory error detector +==1488788== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488788== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488788== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestOutputFileHandler -malloc_debug -malloc_dump -memory_info +==1488788== Parent PID: 1488630 +==1488788== +==1488788== +==1488788== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488788== Open file descriptor 12: +==1488788== at 0x4CB407D: pipe (pipe.c:29) +==1488788== by 0xAEA607D: ??? +==1488788== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488788== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488788== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488788== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488788== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488788== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488788== by 0x11718A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488788== by 0x1128AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488788== by 0x11514C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488788== by 0x114FEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488788== by 0x115683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488788== by 0x110CD5: main (TestOutputFileHandler.cpp:19) +==1488788== +==1488788== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488788== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==1488788== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488788== by 0x492E822: ??? +==1488788== by 0x492E96F: ??? +==1488788== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488788== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488788== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488788== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488788== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488788== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488788== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1488788== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488788== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488788== by 0x11718A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488788== by 0x1128AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488788== by 0x11514C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488788== by 0x114FEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488788== by 0x115683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488788== by 0x110CD5: main (TestOutputFileHandler.cpp:19) +==1488788== +==1488788== Open file descriptor 115: +==1488788== +==1488788== +==1488788== Open file descriptor 112: +==1488788== +==1488788== +==1488788== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOutputFileHandler_valgrind.txt +==1488788== +==1488788== +==1488788== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488788== +==1488788== +==1488788== +==1488788== HEAP SUMMARY: +==1488788== in use at exit: 995,073 bytes in 13,913 blocks +==1488788== total heap usage: 59,132 allocs, 45,219 frees, 1,572,336,304 bytes allocated +==1488788== +==1488788== LEAK SUMMARY: +==1488788== definitely lost: 0 bytes in 0 blocks +==1488788== indirectly lost: 0 bytes in 0 blocks +==1488788== possibly lost: 0 bytes in 0 blocks +==1488788== still reachable: 24 bytes in 2 blocks +==1488788== suppressed: 995,049 bytes in 13,911 blocks +==1488788== Reachable blocks (those to which a pointer was found) are not shown. +==1488788== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488788== +==1488788== For lists of detected and suppressed errors, rerun with: -s +==1488788== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestPCBlockDiagonal_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPCBlockDiagonal_valgrind.txt new file mode 100644 index 0000000000..54d704dd7e --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPCBlockDiagonal_valgrind.txt @@ -0,0 +1,73 @@ +==1488969== Memcheck, a memory error detector +==1488969== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488969== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488969== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCBlockDiagonal -malloc_debug -malloc_dump -memory_info +==1488969== Parent PID: 1488630 +==1488969== +==1488969== +==1488969== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488969== Open file descriptor 12: +==1488969== at 0x60C307D: pipe (pipe.c:29) +==1488969== by 0xAF3A07D: ??? +==1488969== by 0x8A4D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488969== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488969== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488969== by 0x4AB1D38: PetscInitialize (pinit.c:924) +==1488969== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488969== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488969== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488969== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488969== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488969== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488969== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488969== by 0x10D995: main (TestPCBlockDiagonal.cpp:18) +==1488969== +==1488969== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488969== at 0x60C7A1C: __open_nocancel (open64_nocancel.c:39) +==1488969== by 0x604BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488969== by 0x5D3B822: ??? +==1488969== by 0x5D3B96F: ??? +==1488969== by 0x8AF46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488969== by 0x8AF4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488969== by 0x8AAA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488969== by 0x8A4D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488969== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488969== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488969== by 0x4AB1D38: PetscInitialize (pinit.c:924) +==1488969== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488969== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488969== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488969== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488969== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488969== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488969== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488969== by 0x10D995: main (TestPCBlockDiagonal.cpp:18) +==1488969== +==1488969== Open file descriptor 115: +==1488969== +==1488969== +==1488969== Open file descriptor 112: +==1488969== +==1488969== +==1488969== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCBlockDiagonal_valgrind.txt +==1488969== +==1488969== +==1488969== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488969== +==1488969== +==1488969== +==1488969== HEAP SUMMARY: +==1488969== in use at exit: 995,105 bytes in 13,914 blocks +==1488969== total heap usage: 68,980 allocs, 55,066 frees, 1,597,784,878 bytes allocated +==1488969== +==1488969== LEAK SUMMARY: +==1488969== definitely lost: 0 bytes in 0 blocks +==1488969== indirectly lost: 0 bytes in 0 blocks +==1488969== possibly lost: 0 bytes in 0 blocks +==1488969== still reachable: 40 bytes in 3 blocks +==1488969== suppressed: 995,065 bytes in 13,911 blocks +==1488969== Reachable blocks (those to which a pointer was found) are not shown. +==1488969== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488969== +==1488969== For lists of detected and suppressed errors, rerun with: -s +==1488969== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-02-21_13-45-57/TestPCLDUFactorisation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPCLDUFactorisation_valgrind.txt new file mode 100644 index 0000000000..3ae4ce1e67 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPCLDUFactorisation_valgrind.txt @@ -0,0 +1,73 @@ +==1488970== Memcheck, a memory error detector +==1488970== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488970== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488970== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCLDUFactorisation -malloc_debug -malloc_dump -memory_info +==1488970== Parent PID: 1488630 +==1488970== +==1488970== +==1488970== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488970== Open file descriptor 12: +==1488970== at 0x60C307D: pipe (pipe.c:29) +==1488970== by 0xAF3A07D: ??? +==1488970== by 0x8A4D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488970== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488970== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488970== by 0x4AB1D38: PetscInitialize (pinit.c:924) +==1488970== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488970== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488970== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488970== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488970== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488970== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488970== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488970== by 0x10D995: main (TestPCLDUFactorisation.cpp:18) +==1488970== +==1488970== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488970== at 0x60C7A1C: __open_nocancel (open64_nocancel.c:39) +==1488970== by 0x604BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488970== by 0x5D3B822: ??? +==1488970== by 0x5D3B96F: ??? +==1488970== by 0x8AF46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488970== by 0x8AF4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488970== by 0x8AAA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488970== by 0x8A4D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488970== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488970== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488970== by 0x4AB1D38: PetscInitialize (pinit.c:924) +==1488970== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488970== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488970== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488970== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488970== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488970== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488970== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488970== by 0x10D995: main (TestPCLDUFactorisation.cpp:18) +==1488970== +==1488970== Open file descriptor 115: +==1488970== +==1488970== +==1488970== Open file descriptor 112: +==1488970== +==1488970== +==1488970== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCLDUFactorisation_valgrind.txt +==1488970== +==1488970== +==1488970== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488970== +==1488970== +==1488970== +==1488970== HEAP SUMMARY: +==1488970== in use at exit: 995,105 bytes in 13,914 blocks +==1488970== total heap usage: 69,780 allocs, 55,866 frees, 1,598,755,181 bytes allocated +==1488970== +==1488970== LEAK SUMMARY: +==1488970== definitely lost: 0 bytes in 0 blocks +==1488970== indirectly lost: 0 bytes in 0 blocks +==1488970== possibly lost: 0 bytes in 0 blocks +==1488970== still reachable: 40 bytes in 3 blocks +==1488970== suppressed: 995,065 bytes in 13,911 blocks +==1488970== Reachable blocks (those to which a pointer was found) are not shown. +==1488970== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488970== +==1488970== For lists of detected and suppressed errors, rerun with: -s +==1488970== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-02-21_13-45-57/TestPCTwoLevelsBlockDiagonal_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPCTwoLevelsBlockDiagonal_valgrind.txt new file mode 100644 index 0000000000..257f65c77e --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPCTwoLevelsBlockDiagonal_valgrind.txt @@ -0,0 +1,73 @@ +==1488972== Memcheck, a memory error detector +==1488972== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488972== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488972== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCTwoLevelsBlockDiagonal -malloc_debug -malloc_dump -memory_info +==1488972== Parent PID: 1488630 +==1488972== +==1488972== +==1488972== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488972== Open file descriptor 12: +==1488972== at 0x60C307D: pipe (pipe.c:29) +==1488972== by 0xAF3A07D: ??? +==1488972== by 0x8A4D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488972== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488972== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488972== by 0x4AB1D38: PetscInitialize (pinit.c:924) +==1488972== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488972== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488972== by 0x114A0E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488972== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488972== by 0x1127C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488972== by 0x1126C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488972== by 0x112CD5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488972== by 0x10EA95: main (TestPCTwoLevelsBlockDiagonal.cpp:18) +==1488972== +==1488972== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488972== at 0x60C7A1C: __open_nocancel (open64_nocancel.c:39) +==1488972== by 0x604BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488972== by 0x5D3B822: ??? +==1488972== by 0x5D3B96F: ??? +==1488972== by 0x8AF46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488972== by 0x8AF4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488972== by 0x8AAA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488972== by 0x8A4D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488972== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488972== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488972== by 0x4AB1D38: PetscInitialize (pinit.c:924) +==1488972== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488972== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488972== by 0x114A0E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488972== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488972== by 0x1127C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488972== by 0x1126C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488972== by 0x112CD5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488972== by 0x10EA95: main (TestPCTwoLevelsBlockDiagonal.cpp:18) +==1488972== +==1488972== Open file descriptor 115: +==1488972== +==1488972== +==1488972== Open file descriptor 112: +==1488972== +==1488972== +==1488972== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCTwoLevelsBlockDiagonal_valgrind.txt +==1488972== +==1488972== +==1488972== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488972== +==1488972== +==1488972== +==1488972== HEAP SUMMARY: +==1488972== in use at exit: 995,105 bytes in 13,914 blocks +==1488972== total heap usage: 89,164 allocs, 75,250 frees, 1,578,618,152 bytes allocated +==1488972== +==1488972== LEAK SUMMARY: +==1488972== definitely lost: 0 bytes in 0 blocks +==1488972== indirectly lost: 0 bytes in 0 blocks +==1488972== possibly lost: 0 bytes in 0 blocks +==1488972== still reachable: 40 bytes in 3 blocks +==1488972== suppressed: 995,065 bytes in 13,911 blocks +==1488972== Reachable blocks (those to which a pointer was found) are not shown. +==1488972== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488972== +==1488972== For lists of detected and suppressed errors, rerun with: -s +==1488972== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestPapillaryFibreCalculator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPapillaryFibreCalculator_valgrind.txt new file mode 100644 index 0000000000..5b240adf40 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPapillaryFibreCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==1505134== Memcheck, a memory error detector +==1505134== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505134== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505134== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPapillaryFibreCalculator -malloc_debug -malloc_dump -memory_info +==1505134== Parent PID: 1488630 +==1505134== +==1505134== +==1505134== FILE DESCRIPTORS: 7 open (3 std) at exit. +==1505134== Open file descriptor 115: +==1505134== +==1505134== +==1505134== Open file descriptor 112: +==1505134== +==1505134== +==1505134== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPapillaryFibreCalculator_valgrind.txt +==1505134== +==1505134== +==1505134== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505134== +==1505134== +==1505134== +==1505134== HEAP SUMMARY: +==1505134== in use at exit: 24 bytes in 2 blocks +==1505134== total heap usage: 7,134 allocs, 7,132 frees, 1,059,256 bytes allocated +==1505134== +==1505134== LEAK SUMMARY: +==1505134== definitely lost: 0 bytes in 0 blocks +==1505134== indirectly lost: 0 bytes in 0 blocks +==1505134== possibly lost: 0 bytes in 0 blocks +==1505134== still reachable: 24 bytes in 2 blocks +==1505134== suppressed: 0 bytes in 0 blocks +==1505134== Reachable blocks (those to which a pointer was found) are not shown. +==1505134== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505134== +==1505134== For lists of detected and suppressed errors, rerun with: -s +==1505134== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-02-21_13-45-57/TestParabolicBoxDomainPdeModifier_valgrind.txt b/log-files/2024-02-21_13-45-57/TestParabolicBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 0000000000..d8f02daba6 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestParabolicBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==1489914== Memcheck, a memory error detector +==1489914== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489914== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489914== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParabolicBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==1489914== Parent PID: 1488630 +==1489914== +==1489914== +==1489914== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489914== Open file descriptor 12: +==1489914== at 0x1040007D: pipe (pipe.c:29) +==1489914== by 0x18A1D07D: ??? +==1489914== by 0x13F8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489914== by 0xFD08418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489914== by 0xFCA1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489914== by 0xE998D38: PetscInitialize (pinit.c:924) +==1489914== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489914== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489914== by 0x133C67: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489914== by 0x12E57D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489914== by 0x13121C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489914== by 0x1310BC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489914== by 0x131753: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489914== by 0x12C9A5: main (TestParabolicBoxDomainPdeModifier.cpp:19) +==1489914== +==1489914== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489914== at 0x10404A1C: __open_nocancel (open64_nocancel.c:39) +==1489914== by 0x10388BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489914== by 0xE83C822: ??? +==1489914== by 0xE83C96F: ??? +==1489914== by 0x140306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489914== by 0x14030938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489914== by 0x13FE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489914== by 0x13F8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489914== by 0xFD08418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489914== by 0xFCA1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489914== by 0xE998D38: PetscInitialize (pinit.c:924) +==1489914== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489914== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489914== by 0x133C67: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489914== by 0x12E57D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489914== by 0x13121C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489914== by 0x1310BC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489914== by 0x131753: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489914== by 0x12C9A5: main (TestParabolicBoxDomainPdeModifier.cpp:19) +==1489914== +==1489914== Open file descriptor 115: +==1489914== +==1489914== +==1489914== Open file descriptor 112: +==1489914== +==1489914== +==1489914== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParabolicBoxDomainPdeModifier_valgrind.txt +==1489914== +==1489914== +==1489914== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489914== +==1489914== +==1489914== +==1489914== HEAP SUMMARY: +==1489914== in use at exit: 995,526 bytes in 13,910 blocks +==1489914== total heap usage: 2,619,236 allocs, 2,605,326 frees, 1,851,534,664 bytes allocated +==1489914== +==1489914== LEAK SUMMARY: +==1489914== definitely lost: 0 bytes in 0 blocks +==1489914== indirectly lost: 0 bytes in 0 blocks +==1489914== possibly lost: 0 bytes in 0 blocks +==1489914== still reachable: 56 bytes in 3 blocks +==1489914== suppressed: 995,470 bytes in 13,907 blocks +==1489914== Reachable blocks (those to which a pointer was found) are not shown. +==1489914== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489914== +==1489914== For lists of detected and suppressed errors, rerun with: -s +==1489914== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestParabolicGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-02-21_13-45-57/TestParabolicGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 0000000000..48da2400fa --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestParabolicGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==1489930== Memcheck, a memory error detector +==1489930== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489930== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489930== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParabolicGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==1489930== Parent PID: 1488630 +==1489930== +==1489930== +==1489930== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489930== Open file descriptor 12: +==1489930== at 0x104E707D: pipe (pipe.c:29) +==1489930== by 0x18A1D07D: ??? +==1489930== by 0x13F8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489930== by 0xFD08418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489930== by 0xFCA1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489930== by 0xE998D38: PetscInitialize (pinit.c:924) +==1489930== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489930== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489930== by 0x1396A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489930== by 0x13395D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489930== by 0x136826: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489930== by 0x1366C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489930== by 0x136D5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489930== by 0x131D85: main (TestParabolicGrowingDomainPdeModifier.cpp:19) +==1489930== +==1489930== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489930== at 0x104EBA1C: __open_nocancel (open64_nocancel.c:39) +==1489930== by 0x1046FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489930== by 0xE83C822: ??? +==1489930== by 0xE83C96F: ??? +==1489930== by 0x140306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489930== by 0x14030938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489930== by 0x13FE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489930== by 0x13F8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489930== by 0xFD08418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489930== by 0xFCA1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489930== by 0xE998D38: PetscInitialize (pinit.c:924) +==1489930== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489930== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489930== by 0x1396A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489930== by 0x13395D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489930== by 0x136826: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489930== by 0x1366C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489930== by 0x136D5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489930== by 0x131D85: main (TestParabolicGrowingDomainPdeModifier.cpp:19) +==1489930== +==1489930== Open file descriptor 115: +==1489930== +==1489930== +==1489930== Open file descriptor 112: +==1489930== +==1489930== +==1489930== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParabolicGrowingDomainPdeModifier_valgrind.txt +==1489930== +==1489930== +==1489930== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489930== +==1489930== +==1489930== +==1489930== HEAP SUMMARY: +==1489930== in use at exit: 995,526 bytes in 13,910 blocks +==1489930== total heap usage: 7,069,306 allocs, 7,055,396 frees, 2,042,517,365 bytes allocated +==1489930== +==1489930== LEAK SUMMARY: +==1489930== definitely lost: 0 bytes in 0 blocks +==1489930== indirectly lost: 0 bytes in 0 blocks +==1489930== possibly lost: 0 bytes in 0 blocks +==1489930== still reachable: 56 bytes in 3 blocks +==1489930== suppressed: 995,470 bytes in 13,907 blocks +==1489930== Reachable blocks (those to which a pointer was found) are not shown. +==1489930== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489930== +==1489930== For lists of detected and suppressed errors, rerun with: -s +==1489930== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestParallelCellsGenerator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestParallelCellsGenerator_valgrind.txt new file mode 100644 index 0000000000..a90c210f5c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestParallelCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==1489856== Memcheck, a memory error detector +==1489856== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489856== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489856== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParallelCellsGenerator -malloc_debug -malloc_dump -memory_info +==1489856== Parent PID: 1488630 +==1489856== +==1489856== +==1489856== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489856== Open file descriptor 12: +==1489856== at 0x1002107D: pipe (pipe.c:29) +==1489856== by 0x18A1D07D: ??? +==1489856== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489856== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489856== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489856== by 0xE593D38: PetscInitialize (pinit.c:924) +==1489856== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489856== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489856== by 0x123D94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489856== by 0x11ED1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489856== by 0x1216E0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489856== by 0x121580: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489856== by 0x121C17: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489856== by 0x11D0F5: main (TestParallelCellsGenerator.cpp:19) +==1489856== +==1489856== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489856== at 0x10025A1C: __open_nocancel (open64_nocancel.c:39) +==1489856== by 0xFFA9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489856== by 0xF81D822: ??? +==1489856== by 0xF81D96F: ??? +==1489856== by 0x140296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489856== by 0x14029938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489856== by 0x13FDF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489856== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489856== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489856== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489856== by 0xE593D38: PetscInitialize (pinit.c:924) +==1489856== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489856== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489856== by 0x123D94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489856== by 0x11ED1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489856== by 0x1216E0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489856== by 0x121580: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489856== by 0x121C17: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489856== by 0x11D0F5: main (TestParallelCellsGenerator.cpp:19) +==1489856== +==1489856== Open file descriptor 115: +==1489856== +==1489856== +==1489856== Open file descriptor 112: +==1489856== +==1489856== +==1489856== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelCellsGenerator_valgrind.txt +==1489856== +==1489856== +==1489856== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489856== +==1489856== +==1489856== +==1489856== HEAP SUMMARY: +==1489856== in use at exit: 995,649 bytes in 13,915 blocks +==1489856== total heap usage: 66,460 allocs, 52,545 frees, 1,572,120,773 bytes allocated +==1489856== +==1489856== LEAK SUMMARY: +==1489856== definitely lost: 0 bytes in 0 blocks +==1489856== indirectly lost: 0 bytes in 0 blocks +==1489856== possibly lost: 0 bytes in 0 blocks +==1489856== still reachable: 120 bytes in 4 blocks +==1489856== suppressed: 995,529 bytes in 13,911 blocks +==1489856== Reachable blocks (those to which a pointer was found) are not shown. +==1489856== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489856== +==1489856== For lists of detected and suppressed errors, rerun with: -s +==1489856== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestParallelColumnDataReaderWriter_valgrind.txt b/log-files/2024-02-21_13-45-57/TestParallelColumnDataReaderWriter_valgrind.txt new file mode 100644 index 0000000000..3590465824 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestParallelColumnDataReaderWriter_valgrind.txt @@ -0,0 +1,73 @@ +==1488884== Memcheck, a memory error detector +==1488884== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488884== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488884== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestParallelColumnDataReaderWriter -malloc_debug -malloc_dump -memory_info +==1488884== Parent PID: 1488630 +==1488884== +==1488884== +==1488884== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488884== Open file descriptor 12: +==1488884== at 0x60A707D: pipe (pipe.c:29) +==1488884== by 0xAF1907D: ??? +==1488884== by 0x8F3E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488884== by 0x6657418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488884== by 0x65F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488884== by 0x4A95D38: PetscInitialize (pinit.c:924) +==1488884== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488884== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488884== by 0x11B354: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488884== by 0x114A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488884== by 0x1174D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488884== by 0x117378: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488884== by 0x117A0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488884== by 0x112E75: main (TestParallelColumnDataReaderWriter.cpp:19) +==1488884== +==1488884== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488884== at 0x60ABA1C: __open_nocancel (open64_nocancel.c:39) +==1488884== by 0x602FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488884== by 0x5D1F822: ??? +==1488884== by 0x5D1F96F: ??? +==1488884== by 0x8FE36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488884== by 0x8FE3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488884== by 0x8F99922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488884== by 0x8F3E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488884== by 0x6657418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488884== by 0x65F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488884== by 0x4A95D38: PetscInitialize (pinit.c:924) +==1488884== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488884== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488884== by 0x11B354: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488884== by 0x114A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488884== by 0x1174D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488884== by 0x117378: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488884== by 0x117A0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488884== by 0x112E75: main (TestParallelColumnDataReaderWriter.cpp:19) +==1488884== +==1488884== Open file descriptor 115: +==1488884== +==1488884== +==1488884== Open file descriptor 112: +==1488884== +==1488884== +==1488884== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelColumnDataReaderWriter_valgrind.txt +==1488884== +==1488884== +==1488884== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488884== +==1488884== +==1488884== +==1488884== HEAP SUMMARY: +==1488884== in use at exit: 995,089 bytes in 13,913 blocks +==1488884== total heap usage: 58,785 allocs, 44,872 frees, 1,571,868,655 bytes allocated +==1488884== +==1488884== LEAK SUMMARY: +==1488884== definitely lost: 0 bytes in 0 blocks +==1488884== indirectly lost: 0 bytes in 0 blocks +==1488884== possibly lost: 0 bytes in 0 blocks +==1488884== still reachable: 24 bytes in 2 blocks +==1488884== suppressed: 995,065 bytes in 13,911 blocks +==1488884== Reachable blocks (those to which a pointer was found) are not shown. +==1488884== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488884== +==1488884== For lists of detected and suppressed errors, rerun with: -s +==1488884== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestParallelWriterPerformance_valgrind.txt b/log-files/2024-02-21_13-45-57/TestParallelWriterPerformance_valgrind.txt new file mode 100644 index 0000000000..1c0788b6fb --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestParallelWriterPerformance_valgrind.txt @@ -0,0 +1,73 @@ +==1488904== Memcheck, a memory error detector +==1488904== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488904== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488904== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestParallelWriterPerformance -malloc_debug -malloc_dump -memory_info +==1488904== Parent PID: 1488630 +==1488904== +==1488904== +==1488904== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488904== Open file descriptor 12: +==1488904== at 0x60A707D: pipe (pipe.c:29) +==1488904== by 0xAF1907D: ??? +==1488904== by 0x8F3E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488904== by 0x6657418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488904== by 0x65F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488904== by 0x4A95D38: PetscInitialize (pinit.c:924) +==1488904== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488904== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488904== by 0x11316C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488904== by 0x10F013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488904== by 0x111202: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488904== by 0x1110FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488904== by 0x111711: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488904== by 0x10D815: main (TestParallelWriterPerformance.cpp:18) +==1488904== +==1488904== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488904== at 0x60ABA1C: __open_nocancel (open64_nocancel.c:39) +==1488904== by 0x602FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488904== by 0x5D1F822: ??? +==1488904== by 0x5D1F96F: ??? +==1488904== by 0x8FE36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488904== by 0x8FE3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488904== by 0x8F99922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488904== by 0x8F3E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488904== by 0x6657418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488904== by 0x65F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488904== by 0x4A95D38: PetscInitialize (pinit.c:924) +==1488904== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488904== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488904== by 0x11316C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488904== by 0x10F013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488904== by 0x111202: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488904== by 0x1110FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488904== by 0x111711: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488904== by 0x10D815: main (TestParallelWriterPerformance.cpp:18) +==1488904== +==1488904== Open file descriptor 115: +==1488904== +==1488904== +==1488904== Open file descriptor 112: +==1488904== +==1488904== +==1488904== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelWriterPerformance_valgrind.txt +==1488904== +==1488904== +==1488904== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488904== +==1488904== +==1488904== +==1488904== HEAP SUMMARY: +==1488904== in use at exit: 995,089 bytes in 13,913 blocks +==1488904== total heap usage: 58,233 allocs, 44,320 frees, 1,571,549,298 bytes allocated +==1488904== +==1488904== LEAK SUMMARY: +==1488904== definitely lost: 0 bytes in 0 blocks +==1488904== indirectly lost: 0 bytes in 0 blocks +==1488904== possibly lost: 0 bytes in 0 blocks +==1488904== still reachable: 24 bytes in 2 blocks +==1488904== suppressed: 995,065 bytes in 13,911 blocks +==1488904== Reachable blocks (those to which a pointer was found) are not shown. +==1488904== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488904== +==1488904== For lists of detected and suppressed errors, rerun with: -s +==1488904== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestPdeSimulationTime_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPdeSimulationTime_valgrind.txt new file mode 100644 index 0000000000..74db671897 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPdeSimulationTime_valgrind.txt @@ -0,0 +1,73 @@ +==1489661== Memcheck, a memory error detector +==1489661== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489661== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489661== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestPdeSimulationTime -malloc_debug -malloc_dump -memory_info +==1489661== Parent PID: 1488630 +==1489661== +==1489661== +==1489661== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489661== Open file descriptor 12: +==1489661== at 0x505307D: pipe (pipe.c:29) +==1489661== by 0x1014507D: ??? +==1489661== by 0xBF8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489661== by 0x8390418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489661== by 0x8329D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489661== by 0x6C6BD38: PetscInitialize (pinit.c:924) +==1489661== by 0x4C97153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489661== by 0x4C971A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489661== by 0x111E6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489661== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489661== by 0x10FF34: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489661== by 0x10FE2F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489661== by 0x110443: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489661== by 0x10C415: main (TestPdeSimulationTime.cpp:18) +==1489661== +==1489661== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489661== at 0x5057A1C: __open_nocancel (open64_nocancel.c:39) +==1489661== by 0x4FDBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489661== by 0x4CCB822: ??? +==1489661== by 0x4CCB96F: ??? +==1489661== by 0xC0326DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489661== by 0xC032938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489661== by 0xBFE8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489661== by 0xBF8D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489661== by 0x8390418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489661== by 0x8329D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489661== by 0x6C6BD38: PetscInitialize (pinit.c:924) +==1489661== by 0x4C97153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489661== by 0x4C971A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489661== by 0x111E6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489661== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489661== by 0x10FF34: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489661== by 0x10FE2F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489661== by 0x110443: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489661== by 0x10C415: main (TestPdeSimulationTime.cpp:18) +==1489661== +==1489661== Open file descriptor 115: +==1489661== +==1489661== +==1489661== Open file descriptor 112: +==1489661== +==1489661== +==1489661== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPdeSimulationTime_valgrind.txt +==1489661== +==1489661== +==1489661== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489661== +==1489661== +==1489661== +==1489661== HEAP SUMMARY: +==1489661== in use at exit: 995,489 bytes in 13,913 blocks +==1489661== total heap usage: 59,832 allocs, 45,919 frees, 1,571,448,843 bytes allocated +==1489661== +==1489661== LEAK SUMMARY: +==1489661== definitely lost: 0 bytes in 0 blocks +==1489661== indirectly lost: 0 bytes in 0 blocks +==1489661== possibly lost: 0 bytes in 0 blocks +==1489661== still reachable: 24 bytes in 2 blocks +==1489661== suppressed: 995,465 bytes in 13,911 blocks +==1489661== Reachable blocks (those to which a pointer was found) are not shown. +==1489661== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489661== +==1489661== For lists of detected and suppressed errors, rerun with: -s +==1489661== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestPdeTestClasses_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPdeTestClasses_valgrind.txt new file mode 100644 index 0000000000..c8e05f1357 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPdeTestClasses_valgrind.txt @@ -0,0 +1,73 @@ +==1489492== Memcheck, a memory error detector +==1489492== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489492== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489492== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestPdeTestClasses -malloc_debug -malloc_dump -memory_info +==1489492== Parent PID: 1488630 +==1489492== +==1489492== +==1489492== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489492== Open file descriptor 12: +==1489492== at 0x66A807D: pipe (pipe.c:29) +==1489492== by 0xFD3207D: ??? +==1489492== by 0xB6794CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489492== by 0x7CB2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489492== by 0x7C4BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489492== by 0x6942D38: PetscInitialize (pinit.c:924) +==1489492== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489492== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489492== by 0x13051E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489492== by 0x12BAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489492== by 0x12E0E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489492== by 0x12DFE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489492== by 0x12E5F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489492== by 0x12A2F5: main (TestPdeTestClasses.cpp:18) +==1489492== +==1489492== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489492== at 0x66ACA1C: __open_nocancel (open64_nocancel.c:39) +==1489492== by 0x6630BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489492== by 0x61F7822: ??? +==1489492== by 0x61F796F: ??? +==1489492== by 0xB71E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489492== by 0xB71E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489492== by 0xB6D4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489492== by 0xB6792DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489492== by 0x7CB2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489492== by 0x7C4BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489492== by 0x6942D38: PetscInitialize (pinit.c:924) +==1489492== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489492== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489492== by 0x13051E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489492== by 0x12BAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489492== by 0x12E0E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489492== by 0x12DFE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489492== by 0x12E5F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489492== by 0x12A2F5: main (TestPdeTestClasses.cpp:18) +==1489492== +==1489492== Open file descriptor 115: +==1489492== +==1489492== +==1489492== Open file descriptor 112: +==1489492== +==1489492== +==1489492== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPdeTestClasses_valgrind.txt +==1489492== +==1489492== +==1489492== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489492== +==1489492== +==1489492== +==1489492== HEAP SUMMARY: +==1489492== in use at exit: 995,457 bytes in 13,913 blocks +==1489492== total heap usage: 60,035 allocs, 46,122 frees, 1,571,506,228 bytes allocated +==1489492== +==1489492== LEAK SUMMARY: +==1489492== definitely lost: 0 bytes in 0 blocks +==1489492== indirectly lost: 0 bytes in 0 blocks +==1489492== possibly lost: 0 bytes in 0 blocks +==1489492== still reachable: 24 bytes in 2 blocks +==1489492== suppressed: 995,433 bytes in 13,911 blocks +==1489492== Reachable blocks (those to which a pointer was found) are not shown. +==1489492== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489492== +==1489492== For lists of detected and suppressed errors, rerun with: -s +==1489492== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestPerElementWriter_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPerElementWriter_valgrind.txt new file mode 100644 index 0000000000..6b8d7e3bc6 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPerElementWriter_valgrind.txt @@ -0,0 +1,73 @@ +==1489212== Memcheck, a memory error detector +==1489212== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489212== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489212== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestPerElementWriter -malloc_debug -malloc_dump -memory_info +==1489212== Parent PID: 1488630 +==1489212== +==1489212== +==1489212== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489212== Open file descriptor 12: +==1489212== at 0x7D7907D: pipe (pipe.c:29) +==1489212== by 0xFD3507D: ??? +==1489212== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489212== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489212== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489212== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489212== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489212== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489212== by 0x119F70: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489212== by 0x114759: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489212== by 0x116E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489212== by 0x116D21: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489212== by 0x117335: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489212== by 0x112E15: main (TestPerElementWriter.cpp:18) +==1489212== +==1489212== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489212== at 0x7D7DA1C: __open_nocancel (open64_nocancel.c:39) +==1489212== by 0x7D01BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489212== by 0x7575822: ??? +==1489212== by 0x757596F: ??? +==1489212== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489212== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489212== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489212== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489212== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489212== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489212== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489212== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489212== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489212== by 0x119F70: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489212== by 0x114759: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489212== by 0x116E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489212== by 0x116D21: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489212== by 0x117335: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489212== by 0x112E15: main (TestPerElementWriter.cpp:18) +==1489212== +==1489212== Open file descriptor 115: +==1489212== +==1489212== +==1489212== Open file descriptor 112: +==1489212== +==1489212== +==1489212== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPerElementWriter_valgrind.txt +==1489212== +==1489212== +==1489212== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489212== +==1489212== +==1489212== +==1489212== HEAP SUMMARY: +==1489212== in use at exit: 995,457 bytes in 13,913 blocks +==1489212== total heap usage: 65,440 allocs, 51,527 frees, 1,572,044,019 bytes allocated +==1489212== +==1489212== LEAK SUMMARY: +==1489212== definitely lost: 0 bytes in 0 blocks +==1489212== indirectly lost: 0 bytes in 0 blocks +==1489212== possibly lost: 0 bytes in 0 blocks +==1489212== still reachable: 24 bytes in 2 blocks +==1489212== suppressed: 995,433 bytes in 13,911 blocks +==1489212== Reachable blocks (those to which a pointer was found) are not shown. +==1489212== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489212== +==1489212== For lists of detected and suppressed errors, rerun with: -s +==1489212== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt new file mode 100644 index 0000000000..28c3e59212 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt @@ -0,0 +1,73 @@ +==1490362== Memcheck, a memory error detector +==1490362== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490362== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490362== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPeriodicNodeBasedCellPopulationParallelMethods -malloc_debug -malloc_dump -memory_info +==1490362== Parent PID: 1488630 +==1490362== +==1490362== +==1490362== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490362== Open file descriptor 12: +==1490362== at 0xEC5107D: pipe (pipe.c:29) +==1490362== by 0x18A1D07D: ??? +==1490362== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490362== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490362== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490362== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490362== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490362== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490362== by 0x12B4BA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490362== by 0x1266B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490362== by 0x128CBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490362== by 0x128BBA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490362== by 0x1291CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490362== by 0x124EB5: main (TestPeriodicNodeBasedCellPopulationParallelMethods.cpp:18) +==1490362== +==1490362== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490362== at 0xEC55A1C: __open_nocancel (open64_nocancel.c:39) +==1490362== by 0xEBD9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490362== by 0xE49F822: ??? +==1490362== by 0xE49F96F: ??? +==1490362== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490362== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490362== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490362== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490362== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490362== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490362== by 0xF582D38: PetscInitialize (pinit.c:924) +==1490362== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490362== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490362== by 0x12B4BA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490362== by 0x1266B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490362== by 0x128CBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490362== by 0x128BBA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490362== by 0x1291CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490362== by 0x124EB5: main (TestPeriodicNodeBasedCellPopulationParallelMethods.cpp:18) +==1490362== +==1490362== Open file descriptor 115: +==1490362== +==1490362== +==1490362== Open file descriptor 112: +==1490362== +==1490362== +==1490362== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt +==1490362== +==1490362== +==1490362== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490362== +==1490362== +==1490362== +==1490362== HEAP SUMMARY: +==1490362== in use at exit: 995,585 bytes in 13,914 blocks +==1490362== total heap usage: 65,192 allocs, 51,278 frees, 1,571,932,187 bytes allocated +==1490362== +==1490362== LEAK SUMMARY: +==1490362== definitely lost: 0 bytes in 0 blocks +==1490362== indirectly lost: 0 bytes in 0 blocks +==1490362== possibly lost: 0 bytes in 0 blocks +==1490362== still reachable: 56 bytes in 3 blocks +==1490362== suppressed: 995,529 bytes in 13,911 blocks +==1490362== Reachable blocks (those to which a pointer was found) are not shown. +==1490362== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490362== +==1490362== For lists of detected and suppressed errors, rerun with: -s +==1490362== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestPeriodicNodesOnlyMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPeriodicNodesOnlyMesh_valgrind.txt new file mode 100644 index 0000000000..fa42aa2eef --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPeriodicNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489163== Memcheck, a memory error detector +==1489163== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489163== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489163== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestPeriodicNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==1489163== Parent PID: 1488630 +==1489163== +==1489163== +==1489163== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489163== Open file descriptor 12: +==1489163== at 0x69ED07D: pipe (pipe.c:29) +==1489163== by 0xFD3507D: ??? +==1489163== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489163== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489163== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489163== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489163== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489163== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489163== by 0x1300A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489163== by 0x12AC9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489163== by 0x12DA8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489163== by 0x12D92C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489163== by 0x12DFC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489163== by 0x1290C5: main (TestPeriodicNodesOnlyMesh.cpp:19) +==1489163== +==1489163== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489163== at 0x69F1A1C: __open_nocancel (open64_nocancel.c:39) +==1489163== by 0x6975BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489163== by 0x61F7822: ??? +==1489163== by 0x61F796F: ??? +==1489163== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489163== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489163== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489163== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489163== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489163== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489163== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489163== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489163== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489163== by 0x1300A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489163== by 0x12AC9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489163== by 0x12DA8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489163== by 0x12D92C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489163== by 0x12DFC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489163== by 0x1290C5: main (TestPeriodicNodesOnlyMesh.cpp:19) +==1489163== +==1489163== Open file descriptor 115: +==1489163== +==1489163== +==1489163== Open file descriptor 112: +==1489163== +==1489163== +==1489163== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPeriodicNodesOnlyMesh_valgrind.txt +==1489163== +==1489163== +==1489163== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489163== +==1489163== +==1489163== +==1489163== HEAP SUMMARY: +==1489163== in use at exit: 995,457 bytes in 13,913 blocks +==1489163== total heap usage: 70,442 allocs, 56,529 frees, 1,574,097,322 bytes allocated +==1489163== +==1489163== LEAK SUMMARY: +==1489163== definitely lost: 0 bytes in 0 blocks +==1489163== indirectly lost: 0 bytes in 0 blocks +==1489163== possibly lost: 0 bytes in 0 blocks +==1489163== still reachable: 24 bytes in 2 blocks +==1489163== suppressed: 995,433 bytes in 13,911 blocks +==1489163== Reachable blocks (those to which a pointer was found) are not shown. +==1489163== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489163== +==1489163== For lists of detected and suppressed errors, rerun with: -s +==1489163== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestPetscEvents_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPetscEvents_valgrind.txt new file mode 100644 index 0000000000..c9139cd2eb --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPetscEvents_valgrind.txt @@ -0,0 +1,73 @@ +==1488789== Memcheck, a memory error detector +==1488789== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488789== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488789== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscEvents -malloc_debug -malloc_dump -memory_info +==1488789== Parent PID: 1488630 +==1488789== +==1488789== +==1488789== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488789== Open file descriptor 12: +==1488789== at 0x603407D: pipe (pipe.c:29) +==1488789== by 0xAEA607D: ??? +==1488789== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488789== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488789== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488789== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488789== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488789== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488789== by 0x110C5A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488789== by 0x10CB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488789== by 0x10ED24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488789== by 0x10EC20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488789== by 0x10F233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488789== by 0x10B375: main (TestPetscEvents.cpp:18) +==1488789== +==1488789== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488789== at 0x6038A1C: __open_nocancel (open64_nocancel.c:39) +==1488789== by 0x5FBCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488789== by 0x5CAC822: ??? +==1488789== by 0x5CAC96F: ??? +==1488789== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488789== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488789== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488789== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488789== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488789== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488789== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488789== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488789== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488789== by 0x110C5A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488789== by 0x10CB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488789== by 0x10ED24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488789== by 0x10EC20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488789== by 0x10F233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488789== by 0x10B375: main (TestPetscEvents.cpp:18) +==1488789== +==1488789== Open file descriptor 115: +==1488789== +==1488789== +==1488789== Open file descriptor 112: +==1488789== +==1488789== +==1488789== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscEvents_valgrind.txt +==1488789== +==1488789== +==1488789== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488789== +==1488789== +==1488789== +==1488789== HEAP SUMMARY: +==1488789== in use at exit: 995,073 bytes in 13,913 blocks +==1488789== total heap usage: 57,562 allocs, 43,649 frees, 1,571,237,225 bytes allocated +==1488789== +==1488789== LEAK SUMMARY: +==1488789== definitely lost: 0 bytes in 0 blocks +==1488789== indirectly lost: 0 bytes in 0 blocks +==1488789== possibly lost: 0 bytes in 0 blocks +==1488789== still reachable: 24 bytes in 2 blocks +==1488789== suppressed: 995,049 bytes in 13,911 blocks +==1488789== Reachable blocks (those to which a pointer was found) are not shown. +==1488789== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488789== +==1488789== For lists of detected and suppressed errors, rerun with: -s +==1488789== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestPetscMatTools_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPetscMatTools_valgrind.txt new file mode 100644 index 0000000000..a98e09c391 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPetscMatTools_valgrind.txt @@ -0,0 +1,73 @@ +==1488942== Memcheck, a memory error detector +==1488942== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488942== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488942== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPetscMatTools -malloc_debug -malloc_dump -memory_info +==1488942== Parent PID: 1488630 +==1488942== +==1488942== +==1488942== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488942== Open file descriptor 12: +==1488942== at 0x60C307D: pipe (pipe.c:29) +==1488942== by 0xAF3A07D: ??? +==1488942== by 0x8A4D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488942== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488942== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488942== by 0x4AB1D38: PetscInitialize (pinit.c:924) +==1488942== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488942== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488942== by 0x114148: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488942== by 0x10FD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488942== by 0x1121C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488942== by 0x1120BF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488942== by 0x1126D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488942== by 0x10E555: main (TestPetscMatTools.cpp:18) +==1488942== +==1488942== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488942== at 0x60C7A1C: __open_nocancel (open64_nocancel.c:39) +==1488942== by 0x604BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488942== by 0x5D3B822: ??? +==1488942== by 0x5D3B96F: ??? +==1488942== by 0x8AF46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488942== by 0x8AF4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488942== by 0x8AAA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488942== by 0x8A4D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488942== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488942== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488942== by 0x4AB1D38: PetscInitialize (pinit.c:924) +==1488942== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488942== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488942== by 0x114148: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488942== by 0x10FD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488942== by 0x1121C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488942== by 0x1120BF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488942== by 0x1126D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488942== by 0x10E555: main (TestPetscMatTools.cpp:18) +==1488942== +==1488942== Open file descriptor 115: +==1488942== +==1488942== +==1488942== Open file descriptor 112: +==1488942== +==1488942== +==1488942== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscMatTools_valgrind.txt +==1488942== +==1488942== +==1488942== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488942== +==1488942== +==1488942== +==1488942== HEAP SUMMARY: +==1488942== in use at exit: 995,089 bytes in 13,913 blocks +==1488942== total heap usage: 59,575 allocs, 45,662 frees, 1,571,485,941 bytes allocated +==1488942== +==1488942== LEAK SUMMARY: +==1488942== definitely lost: 0 bytes in 0 blocks +==1488942== indirectly lost: 0 bytes in 0 blocks +==1488942== possibly lost: 0 bytes in 0 blocks +==1488942== still reachable: 24 bytes in 2 blocks +==1488942== suppressed: 995,065 bytes in 13,911 blocks +==1488942== Reachable blocks (those to which a pointer was found) are not shown. +==1488942== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488942== +==1488942== For lists of detected and suppressed errors, rerun with: -s +==1488942== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestPetscSetup_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPetscSetup_valgrind.txt new file mode 100644 index 0000000000..11139651c1 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPetscSetup_valgrind.txt @@ -0,0 +1,73 @@ +==1488790== Memcheck, a memory error detector +==1488790== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488790== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488790== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscSetup -malloc_debug -malloc_dump -memory_info +==1488790== Parent PID: 1488630 +==1488790== +==1488790== +==1488790== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488790== Open file descriptor 12: +==1488790== at 0x603407D: pipe (pipe.c:29) +==1488790== by 0xAEA607D: ??? +==1488790== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488790== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488790== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488790== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488790== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488790== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488790== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488790== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488790== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488790== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488790== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488790== by 0x10D8B5: main (TestPetscSetup.cpp:19) +==1488790== +==1488790== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488790== at 0x6038A1C: __open_nocancel (open64_nocancel.c:39) +==1488790== by 0x5FBCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488790== by 0x5CAC822: ??? +==1488790== by 0x5CAC96F: ??? +==1488790== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488790== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488790== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488790== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488790== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488790== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488790== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488790== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488790== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488790== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488790== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488790== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488790== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488790== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488790== by 0x10D8B5: main (TestPetscSetup.cpp:19) +==1488790== +==1488790== Open file descriptor 115: +==1488790== +==1488790== +==1488790== Open file descriptor 112: +==1488790== +==1488790== +==1488790== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscSetup_valgrind.txt +==1488790== +==1488790== +==1488790== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488790== +==1488790== +==1488790== +==1488790== HEAP SUMMARY: +==1488790== in use at exit: 995,073 bytes in 13,913 blocks +==1488790== total heap usage: 57,910 allocs, 43,997 frees, 1,571,294,446 bytes allocated +==1488790== +==1488790== LEAK SUMMARY: +==1488790== definitely lost: 0 bytes in 0 blocks +==1488790== indirectly lost: 0 bytes in 0 blocks +==1488790== possibly lost: 0 bytes in 0 blocks +==1488790== still reachable: 24 bytes in 2 blocks +==1488790== suppressed: 995,049 bytes in 13,911 blocks +==1488790== Reachable blocks (those to which a pointer was found) are not shown. +==1488790== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488790== +==1488790== For lists of detected and suppressed errors, rerun with: -s +==1488790== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestPetscTools2_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPetscTools2_valgrind.txt new file mode 100644 index 0000000000..5045e3c504 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPetscTools2_valgrind.txt @@ -0,0 +1,36 @@ +==1488792== Memcheck, a memory error detector +==1488792== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488792== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488792== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscTools2 -malloc_debug -malloc_dump -memory_info +==1488792== Parent PID: 1488630 +==1488792== +==1488792== +==1488792== FILE DESCRIPTORS: 7 open (3 std) at exit. +==1488792== Open file descriptor 115: +==1488792== +==1488792== +==1488792== Open file descriptor 112: +==1488792== +==1488792== +==1488792== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscTools2_valgrind.txt +==1488792== +==1488792== +==1488792== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488792== +==1488792== +==1488792== +==1488792== HEAP SUMMARY: +==1488792== in use at exit: 24 bytes in 2 blocks +==1488792== total heap usage: 3,070 allocs, 3,068 frees, 350,269 bytes allocated +==1488792== +==1488792== LEAK SUMMARY: +==1488792== definitely lost: 0 bytes in 0 blocks +==1488792== indirectly lost: 0 bytes in 0 blocks +==1488792== possibly lost: 0 bytes in 0 blocks +==1488792== still reachable: 24 bytes in 2 blocks +==1488792== suppressed: 0 bytes in 0 blocks +==1488792== Reachable blocks (those to which a pointer was found) are not shown. +==1488792== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488792== +==1488792== For lists of detected and suppressed errors, rerun with: -s +==1488792== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-02-21_13-45-57/TestPetscTools_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPetscTools_valgrind.txt new file mode 100644 index 0000000000..0de218d4d4 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPetscTools_valgrind.txt @@ -0,0 +1,73 @@ +==1488791== Memcheck, a memory error detector +==1488791== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488791== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488791== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscTools -malloc_debug -malloc_dump -memory_info +==1488791== Parent PID: 1488630 +==1488791== +==1488791== +==1488791== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488791== Open file descriptor 12: +==1488791== at 0x616B07D: pipe (pipe.c:29) +==1488791== by 0xAEA607D: ??? +==1488791== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488791== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488791== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488791== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488791== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488791== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488791== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488791== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488791== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488791== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488791== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488791== by 0x110FB5: main (TestPetscTools.cpp:19) +==1488791== +==1488791== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488791== at 0x616FA1C: __open_nocancel (open64_nocancel.c:39) +==1488791== by 0x60F3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488791== by 0x5CAC822: ??? +==1488791== by 0x5CAC96F: ??? +==1488791== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488791== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488791== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488791== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488791== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488791== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488791== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488791== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488791== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488791== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488791== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488791== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488791== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488791== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488791== by 0x110FB5: main (TestPetscTools.cpp:19) +==1488791== +==1488791== Open file descriptor 115: +==1488791== +==1488791== +==1488791== Open file descriptor 112: +==1488791== +==1488791== +==1488791== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscTools_valgrind.txt +==1488791== +==1488791== +==1488791== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488791== +==1488791== +==1488791== +==1488791== HEAP SUMMARY: +==1488791== in use at exit: 995,073 bytes in 13,913 blocks +==1488791== total heap usage: 60,562 allocs, 46,649 frees, 1,571,944,113 bytes allocated +==1488791== +==1488791== LEAK SUMMARY: +==1488791== definitely lost: 0 bytes in 0 blocks +==1488791== indirectly lost: 0 bytes in 0 blocks +==1488791== possibly lost: 0 bytes in 0 blocks +==1488791== still reachable: 24 bytes in 2 blocks +==1488791== suppressed: 995,049 bytes in 13,911 blocks +==1488791== Reachable blocks (those to which a pointer was found) are not shown. +==1488791== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488791== +==1488791== For lists of detected and suppressed errors, rerun with: -s +==1488791== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestPetscVecTools_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPetscVecTools_valgrind.txt new file mode 100644 index 0000000000..ee98501fcb --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPetscVecTools_valgrind.txt @@ -0,0 +1,73 @@ +==1488958== Memcheck, a memory error detector +==1488958== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488958== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488958== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPetscVecTools -malloc_debug -malloc_dump -memory_info +==1488958== Parent PID: 1488630 +==1488958== +==1488958== +==1488958== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488958== Open file descriptor 12: +==1488958== at 0x60C307D: pipe (pipe.c:29) +==1488958== by 0xAF3A07D: ??? +==1488958== by 0x8A4D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488958== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488958== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488958== by 0x4AB1D38: PetscInitialize (pinit.c:924) +==1488958== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488958== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488958== by 0x1121EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488958== by 0x10DD73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488958== by 0x11016A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488958== by 0x110065: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488958== by 0x110679: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488958== by 0x10C575: main (TestPetscVecTools.cpp:18) +==1488958== +==1488958== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488958== at 0x60C7A1C: __open_nocancel (open64_nocancel.c:39) +==1488958== by 0x604BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488958== by 0x5D3B822: ??? +==1488958== by 0x5D3B96F: ??? +==1488958== by 0x8AF46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488958== by 0x8AF4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488958== by 0x8AAA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488958== by 0x8A4D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488958== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488958== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488958== by 0x4AB1D38: PetscInitialize (pinit.c:924) +==1488958== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488958== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488958== by 0x1121EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488958== by 0x10DD73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488958== by 0x11016A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488958== by 0x110065: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488958== by 0x110679: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488958== by 0x10C575: main (TestPetscVecTools.cpp:18) +==1488958== +==1488958== Open file descriptor 115: +==1488958== +==1488958== +==1488958== Open file descriptor 112: +==1488958== +==1488958== +==1488958== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscVecTools_valgrind.txt +==1488958== +==1488958== +==1488958== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488958== +==1488958== +==1488958== +==1488958== HEAP SUMMARY: +==1488958== in use at exit: 995,089 bytes in 13,913 blocks +==1488958== total heap usage: 58,116 allocs, 44,203 frees, 1,571,336,607 bytes allocated +==1488958== +==1488958== LEAK SUMMARY: +==1488958== definitely lost: 0 bytes in 0 blocks +==1488958== indirectly lost: 0 bytes in 0 blocks +==1488958== possibly lost: 0 bytes in 0 blocks +==1488958== still reachable: 24 bytes in 2 blocks +==1488958== suppressed: 995,065 bytes in 13,911 blocks +==1488958== Reachable blocks (those to which a pointer was found) are not shown. +==1488958== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488958== +==1488958== For lists of detected and suppressed errors, rerun with: -s +==1488958== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestPlaneStimulusCellFactory_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPlaneStimulusCellFactory_valgrind.txt new file mode 100644 index 0000000000..592f6020f6 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPlaneStimulusCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==1506901== Memcheck, a memory error detector +==1506901== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506901== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506901== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPlaneStimulusCellFactory -malloc_debug -malloc_dump -memory_info +==1506901== Parent PID: 1488630 +==1506901== +==1506901== +==1506901== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506901== Open file descriptor 12: +==1506901== at 0xB87807D: pipe (pipe.c:29) +==1506901== by 0x13F9607D: ??? +==1506901== by 0xF7514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506901== by 0xB166418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506901== by 0xB0FFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506901== by 0x9DD0D38: PetscInitialize (pinit.c:924) +==1506901== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506901== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506901== by 0x12063D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1506901== by 0x11B96D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506901== by 0x11E212: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506901== by 0x11E0B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506901== by 0x11E749: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506901== by 0x119D95: main (TestPlaneStimulusCellFactory.cpp:19) +==1506901== +==1506901== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506901== at 0xB87CA1C: __open_nocancel (open64_nocancel.c:39) +==1506901== by 0xB800BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506901== by 0xB05A822: ??? +==1506901== by 0xB05A96F: ??? +==1506901== by 0xF7F66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506901== by 0xF7F6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506901== by 0xF7AC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506901== by 0xF7512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506901== by 0xB166418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506901== by 0xB0FFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506901== by 0x9DD0D38: PetscInitialize (pinit.c:924) +==1506901== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506901== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506901== by 0x12063D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1506901== by 0x11B96D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506901== by 0x11E212: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506901== by 0x11E0B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506901== by 0x11E749: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506901== by 0x119D95: main (TestPlaneStimulusCellFactory.cpp:19) +==1506901== +==1506901== Open file descriptor 115: +==1506901== +==1506901== +==1506901== Open file descriptor 112: +==1506901== +==1506901== +==1506901== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPlaneStimulusCellFactory_valgrind.txt +==1506901== +==1506901== +==1506901== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506901== +==1506901== +==1506901== +==1506901== HEAP SUMMARY: +==1506901== in use at exit: 995,569 bytes in 13,913 blocks +==1506901== total heap usage: 94,492 allocs, 80,579 frees, 1,576,249,570 bytes allocated +==1506901== +==1506901== LEAK SUMMARY: +==1506901== definitely lost: 0 bytes in 0 blocks +==1506901== indirectly lost: 0 bytes in 0 blocks +==1506901== possibly lost: 0 bytes in 0 blocks +==1506901== still reachable: 24 bytes in 2 blocks +==1506901== suppressed: 995,545 bytes in 13,911 blocks +==1506901== Reachable blocks (those to which a pointer was found) are not shown. +==1506901== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506901== +==1506901== For lists of detected and suppressed errors, rerun with: -s +==1506901== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestPostProcessingWriter_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPostProcessingWriter_valgrind.txt new file mode 100644 index 0000000000..fa682782d3 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPostProcessingWriter_valgrind.txt @@ -0,0 +1,73 @@ +==1506836== Memcheck, a memory error detector +==1506836== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506836== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506836== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPostProcessingWriter -malloc_debug -malloc_dump -memory_info +==1506836== Parent PID: 1488630 +==1506836== +==1506836== +==1506836== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506836== Open file descriptor 12: +==1506836== at 0xBBE007D: pipe (pipe.c:29) +==1506836== by 0x13F9807D: ??? +==1506836== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506836== by 0xBF5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506836== by 0xBEF6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506836== by 0xA271D38: PetscInitialize (pinit.c:924) +==1506836== by 0xA147153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506836== by 0xA1471A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506836== by 0x127348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506836== by 0x1210D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506836== by 0x123BD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506836== by 0x123AD3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506836== by 0x1240E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506836== by 0x11F8D5: main (TestPostProcessingWriter.cpp:18) +==1506836== +==1506836== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506836== at 0xBBE4A1C: __open_nocancel (open64_nocancel.c:39) +==1506836== by 0xBB68BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506836== by 0xB4FB822: ??? +==1506836== by 0xB4FB96F: ??? +==1506836== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506836== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506836== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506836== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506836== by 0xBF5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506836== by 0xBEF6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506836== by 0xA271D38: PetscInitialize (pinit.c:924) +==1506836== by 0xA147153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506836== by 0xA1471A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506836== by 0x127348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506836== by 0x1210D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506836== by 0x123BD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506836== by 0x123AD3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506836== by 0x1240E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506836== by 0x11F8D5: main (TestPostProcessingWriter.cpp:18) +==1506836== +==1506836== Open file descriptor 115: +==1506836== +==1506836== +==1506836== Open file descriptor 112: +==1506836== +==1506836== +==1506836== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPostProcessingWriter_valgrind.txt +==1506836== +==1506836== +==1506836== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506836== +==1506836== +==1506836== +==1506836== HEAP SUMMARY: +==1506836== in use at exit: 995,990 bytes in 13,919 blocks +==1506836== total heap usage: 10,880,958 allocs, 10,867,039 frees, 11,952,535,626 bytes allocated +==1506836== +==1506836== LEAK SUMMARY: +==1506836== definitely lost: 0 bytes in 0 blocks +==1506836== indirectly lost: 0 bytes in 0 blocks +==1506836== possibly lost: 0 bytes in 0 blocks +==1506836== still reachable: 24 bytes in 2 blocks +==1506836== suppressed: 995,966 bytes in 13,917 blocks +==1506836== Reachable blocks (those to which a pointer was found) are not shown. +==1506836== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506836== +==1506836== For lists of detected and suppressed errors, rerun with: -s +==1506836== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 101 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestPottsBasedCellPopulation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPottsBasedCellPopulation_valgrind.txt new file mode 100644 index 0000000000..68c1698150 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPottsBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==1490366== Memcheck, a memory error detector +==1490366== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490366== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490366== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==1490366== Parent PID: 1488630 +==1490366== +==1490366== +==1490366== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490366== Open file descriptor 12: +==1490366== at 0x1014A07D: pipe (pipe.c:29) +==1490366== by 0x18A1D07D: ??? +==1490366== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490366== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490366== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490366== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1490366== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490366== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490366== by 0x16AB57: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490366== by 0x162E49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490366== by 0x166190: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490366== by 0x166030: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490366== by 0x1666C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490366== by 0x161265: main (TestPottsBasedCellPopulation.cpp:19) +==1490366== +==1490366== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490366== at 0x1014EA1C: __open_nocancel (open64_nocancel.c:39) +==1490366== by 0x100D2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490366== by 0xE49F822: ??? +==1490366== by 0xE49F96F: ??? +==1490366== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490366== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490366== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490366== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490366== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490366== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490366== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1490366== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490366== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490366== by 0x16AB57: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490366== by 0x162E49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490366== by 0x166190: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490366== by 0x166030: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490366== by 0x1666C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490366== by 0x161265: main (TestPottsBasedCellPopulation.cpp:19) +==1490366== +==1490366== Open file descriptor 115: +==1490366== +==1490366== +==1490366== Open file descriptor 112: +==1490366== +==1490366== +==1490366== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsBasedCellPopulation_valgrind.txt +==1490366== +==1490366== +==1490366== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490366== +==1490366== +==1490366== +==1490366== HEAP SUMMARY: +==1490366== in use at exit: 995,585 bytes in 13,914 blocks +==1490366== total heap usage: 87,055 allocs, 73,141 frees, 1,577,008,939 bytes allocated +==1490366== +==1490366== LEAK SUMMARY: +==1490366== definitely lost: 0 bytes in 0 blocks +==1490366== indirectly lost: 0 bytes in 0 blocks +==1490366== possibly lost: 0 bytes in 0 blocks +==1490366== still reachable: 56 bytes in 3 blocks +==1490366== suppressed: 995,529 bytes in 13,911 blocks +==1490366== Reachable blocks (those to which a pointer was found) are not shown. +==1490366== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490366== +==1490366== For lists of detected and suppressed errors, rerun with: -s +==1490366== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestPottsBasedCryptSimulation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPottsBasedCryptSimulation_valgrind.txt new file mode 100644 index 0000000000..c185881cdb --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPottsBasedCryptSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==1504417== Memcheck, a memory error detector +==1504417== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504417== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504417== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestPottsBasedCryptSimulation -malloc_debug -malloc_dump -memory_info +==1504417== Parent PID: 1488630 +==1504417== +==1504417== +==1504417== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504417== Open file descriptor 12: +==1504417== at 0x1042A07D: pipe (pipe.c:29) +==1504417== by 0x1A6DF07D: ??? +==1504417== by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504417== by 0x121B2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504417== by 0x1214BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504417== by 0x10E42D38: PetscInitialize (pinit.c:924) +==1504417== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504417== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504417== by 0x122076: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504417== by 0x11D6B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504417== by 0x11FAA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504417== by 0x11F9A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504417== by 0x11FFB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504417== by 0x11BEB5: main (TestPottsBasedCryptSimulation.cpp:18) +==1504417== +==1504417== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504417== at 0x1042EA1C: __open_nocancel (open64_nocancel.c:39) +==1504417== by 0x103B2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504417== by 0xFD5F822: ??? +==1504417== by 0xFD5F96F: ??? +==1504417== by 0x159956DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504417== by 0x15995938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504417== by 0x1594B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504417== by 0x158F02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504417== by 0x121B2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504417== by 0x1214BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504417== by 0x10E42D38: PetscInitialize (pinit.c:924) +==1504417== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504417== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504417== by 0x122076: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504417== by 0x11D6B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504417== by 0x11FAA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504417== by 0x11F9A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504417== by 0x11FFB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504417== by 0x11BEB5: main (TestPottsBasedCryptSimulation.cpp:18) +==1504417== +==1504417== Open file descriptor 115: +==1504417== +==1504417== +==1504417== Open file descriptor 112: +==1504417== +==1504417== +==1504417== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsBasedCryptSimulation_valgrind.txt +==1504417== +==1504417== +==1504417== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504417== +==1504417== +==1504417== +==1504417== HEAP SUMMARY: +==1504417== in use at exit: 995,622 bytes in 13,911 blocks +==1504417== total heap usage: 46,852,376 allocs, 46,838,465 frees, 5,826,046,364 bytes allocated +==1504417== +==1504417== LEAK SUMMARY: +==1504417== definitely lost: 0 bytes in 0 blocks +==1504417== indirectly lost: 0 bytes in 0 blocks +==1504417== possibly lost: 0 bytes in 0 blocks +==1504417== still reachable: 136 bytes in 4 blocks +==1504417== suppressed: 995,486 bytes in 13,907 blocks +==1504417== Reachable blocks (those to which a pointer was found) are not shown. +==1504417== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504417== +==1504417== For lists of detected and suppressed errors, rerun with: -s +==1504417== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestPottsElement_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPottsElement_valgrind.txt new file mode 100644 index 0000000000..00e3a064ff --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPottsElement_valgrind.txt @@ -0,0 +1,73 @@ +==1490040== Memcheck, a memory error detector +==1490040== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490040== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490040== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsElement -malloc_debug -malloc_dump -memory_info +==1490040== Parent PID: 1488630 +==1490040== +==1490040== +==1490040== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490040== Open file descriptor 12: +==1490040== at 0xE82507D: pipe (pipe.c:29) +==1490040== by 0x18A1D07D: ??? +==1490040== by 0x13FD74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490040== by 0x104C4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490040== by 0x1045DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490040== by 0xF154D38: PetscInitialize (pinit.c:924) +==1490040== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490040== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490040== by 0x11A5B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490040== by 0x115A6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490040== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490040== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490040== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490040== by 0x113E95: main (TestPottsElement.cpp:19) +==1490040== +==1490040== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490040== at 0xE829A1C: __open_nocancel (open64_nocancel.c:39) +==1490040== by 0xE7ADBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490040== by 0xE49F822: ??? +==1490040== by 0xE49F96F: ??? +==1490040== by 0x1407C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490040== by 0x1407C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490040== by 0x14032922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490040== by 0x13FD72DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490040== by 0x104C4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490040== by 0x1045DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490040== by 0xF154D38: PetscInitialize (pinit.c:924) +==1490040== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490040== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490040== by 0x11A5B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490040== by 0x115A6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490040== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490040== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490040== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490040== by 0x113E95: main (TestPottsElement.cpp:19) +==1490040== +==1490040== Open file descriptor 115: +==1490040== +==1490040== +==1490040== Open file descriptor 112: +==1490040== +==1490040== +==1490040== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsElement_valgrind.txt +==1490040== +==1490040== +==1490040== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490040== +==1490040== +==1490040== +==1490040== HEAP SUMMARY: +==1490040== in use at exit: 995,553 bytes in 13,913 blocks +==1490040== total heap usage: 65,248 allocs, 51,335 frees, 1,571,926,978 bytes allocated +==1490040== +==1490040== LEAK SUMMARY: +==1490040== definitely lost: 0 bytes in 0 blocks +==1490040== indirectly lost: 0 bytes in 0 blocks +==1490040== possibly lost: 0 bytes in 0 blocks +==1490040== still reachable: 24 bytes in 2 blocks +==1490040== suppressed: 995,529 bytes in 13,911 blocks +==1490040== Reachable blocks (those to which a pointer was found) are not shown. +==1490040== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490040== +==1490040== For lists of detected and suppressed errors, rerun with: -s +==1490040== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestPottsMeshGenerator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPottsMeshGenerator_valgrind.txt new file mode 100644 index 0000000000..6fb75edb04 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPottsMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==1490064== Memcheck, a memory error detector +==1490064== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490064== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490064== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshGenerator -malloc_debug -malloc_dump -memory_info +==1490064== Parent PID: 1488630 +==1490064== +==1490064== +==1490064== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490064== Open file descriptor 12: +==1490064== at 0xE82507D: pipe (pipe.c:29) +==1490064== by 0x18A1D07D: ??? +==1490064== by 0x13FD74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490064== by 0x104C4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490064== by 0x1045DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490064== by 0xF154D38: PetscInitialize (pinit.c:924) +==1490064== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490064== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490064== by 0x118EF2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490064== by 0x1145AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490064== by 0x116DAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490064== by 0x116C4D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490064== by 0x1172E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490064== by 0x1129D5: main (TestPottsMeshGenerator.cpp:19) +==1490064== +==1490064== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490064== at 0xE829A1C: __open_nocancel (open64_nocancel.c:39) +==1490064== by 0xE7ADBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490064== by 0xE49F822: ??? +==1490064== by 0xE49F96F: ??? +==1490064== by 0x1407C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490064== by 0x1407C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490064== by 0x14032922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490064== by 0x13FD72DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490064== by 0x104C4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490064== by 0x1045DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490064== by 0xF154D38: PetscInitialize (pinit.c:924) +==1490064== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490064== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490064== by 0x118EF2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490064== by 0x1145AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490064== by 0x116DAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490064== by 0x116C4D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490064== by 0x1172E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490064== by 0x1129D5: main (TestPottsMeshGenerator.cpp:19) +==1490064== +==1490064== Open file descriptor 115: +==1490064== +==1490064== +==1490064== Open file descriptor 112: +==1490064== +==1490064== +==1490064== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshGenerator_valgrind.txt +==1490064== +==1490064== +==1490064== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490064== +==1490064== +==1490064== +==1490064== HEAP SUMMARY: +==1490064== in use at exit: 995,553 bytes in 13,913 blocks +==1490064== total heap usage: 166,860 allocs, 152,947 frees, 1,576,526,916 bytes allocated +==1490064== +==1490064== LEAK SUMMARY: +==1490064== definitely lost: 0 bytes in 0 blocks +==1490064== indirectly lost: 0 bytes in 0 blocks +==1490064== possibly lost: 0 bytes in 0 blocks +==1490064== still reachable: 24 bytes in 2 blocks +==1490064== suppressed: 995,529 bytes in 13,911 blocks +==1490064== Reachable blocks (those to which a pointer was found) are not shown. +==1490064== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490064== +==1490064== For lists of detected and suppressed errors, rerun with: -s +==1490064== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestPottsMeshReader_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPottsMeshReader_valgrind.txt new file mode 100644 index 0000000000..ebb5c9acea --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPottsMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==1490073== Memcheck, a memory error detector +==1490073== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490073== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490073== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshReader -malloc_debug -malloc_dump -memory_info +==1490073== Parent PID: 1488630 +==1490073== +==1490073== +==1490073== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490073== Open file descriptor 12: +==1490073== at 0xE82507D: pipe (pipe.c:29) +==1490073== by 0x18A1D07D: ??? +==1490073== by 0x13FD74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490073== by 0x104C4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490073== by 0x1045DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490073== by 0xF154D38: PetscInitialize (pinit.c:924) +==1490073== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490073== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490073== by 0x118F5E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490073== by 0x11450D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490073== by 0x116FE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490073== by 0x116E80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490073== by 0x117517: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490073== by 0x112935: main (TestPottsMeshReader.cpp:19) +==1490073== +==1490073== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490073== at 0xE829A1C: __open_nocancel (open64_nocancel.c:39) +==1490073== by 0xE7ADBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490073== by 0xE49F822: ??? +==1490073== by 0xE49F96F: ??? +==1490073== by 0x1407C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490073== by 0x1407C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490073== by 0x14032922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490073== by 0x13FD72DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490073== by 0x104C4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490073== by 0x1045DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490073== by 0xF154D38: PetscInitialize (pinit.c:924) +==1490073== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490073== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490073== by 0x118F5E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490073== by 0x11450D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490073== by 0x116FE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490073== by 0x116E80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490073== by 0x117517: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490073== by 0x112935: main (TestPottsMeshReader.cpp:19) +==1490073== +==1490073== Open file descriptor 115: +==1490073== +==1490073== +==1490073== Open file descriptor 112: +==1490073== +==1490073== +==1490073== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshReader_valgrind.txt +==1490073== +==1490073== +==1490073== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490073== +==1490073== +==1490073== +==1490073== HEAP SUMMARY: +==1490073== in use at exit: 995,553 bytes in 13,913 blocks +==1490073== total heap usage: 65,496 allocs, 51,583 frees, 1,572,184,299 bytes allocated +==1490073== +==1490073== LEAK SUMMARY: +==1490073== definitely lost: 0 bytes in 0 blocks +==1490073== indirectly lost: 0 bytes in 0 blocks +==1490073== possibly lost: 0 bytes in 0 blocks +==1490073== still reachable: 24 bytes in 2 blocks +==1490073== suppressed: 995,529 bytes in 13,911 blocks +==1490073== Reachable blocks (those to which a pointer was found) are not shown. +==1490073== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490073== +==1490073== For lists of detected and suppressed errors, rerun with: -s +==1490073== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestPottsMeshWriter_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPottsMeshWriter_valgrind.txt new file mode 100644 index 0000000000..c5d1792c17 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPottsMeshWriter_valgrind.txt @@ -0,0 +1,73 @@ +==1490093== Memcheck, a memory error detector +==1490093== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490093== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490093== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshWriter -malloc_debug -malloc_dump -memory_info +==1490093== Parent PID: 1488630 +==1490093== +==1490093== +==1490093== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490093== Open file descriptor 12: +==1490093== at 0x1002107D: pipe (pipe.c:29) +==1490093== by 0x18A1D07D: ??? +==1490093== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490093== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490093== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490093== by 0xE593D38: PetscInitialize (pinit.c:924) +==1490093== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490093== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490093== by 0x11BA1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490093== by 0x1156B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490093== by 0x117F02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490093== by 0x117DFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490093== by 0x118411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490093== by 0x113EB5: main (TestPottsMeshWriter.cpp:18) +==1490093== +==1490093== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490093== at 0x10025A1C: __open_nocancel (open64_nocancel.c:39) +==1490093== by 0xFFA9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490093== by 0xF81D822: ??? +==1490093== by 0xF81D96F: ??? +==1490093== by 0x140296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490093== by 0x14029938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490093== by 0x13FDF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490093== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490093== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490093== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490093== by 0xE593D38: PetscInitialize (pinit.c:924) +==1490093== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490093== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490093== by 0x11BA1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490093== by 0x1156B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490093== by 0x117F02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490093== by 0x117DFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490093== by 0x118411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490093== by 0x113EB5: main (TestPottsMeshWriter.cpp:18) +==1490093== +==1490093== Open file descriptor 115: +==1490093== +==1490093== +==1490093== Open file descriptor 112: +==1490093== +==1490093== +==1490093== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshWriter_valgrind.txt +==1490093== +==1490093== +==1490093== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490093== +==1490093== +==1490093== +==1490093== HEAP SUMMARY: +==1490093== in use at exit: 995,553 bytes in 13,913 blocks +==1490093== total heap usage: 66,707 allocs, 52,794 frees, 1,572,609,226 bytes allocated +==1490093== +==1490093== LEAK SUMMARY: +==1490093== definitely lost: 0 bytes in 0 blocks +==1490093== indirectly lost: 0 bytes in 0 blocks +==1490093== possibly lost: 0 bytes in 0 blocks +==1490093== still reachable: 24 bytes in 2 blocks +==1490093== suppressed: 995,529 bytes in 13,911 blocks +==1490093== Reachable blocks (those to which a pointer was found) are not shown. +==1490093== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490093== +==1490093== For lists of detected and suppressed errors, rerun with: -s +==1490093== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestPottsMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPottsMesh_valgrind.txt new file mode 100644 index 0000000000..5702242d99 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPottsMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1490042== Memcheck, a memory error detector +==1490042== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490042== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490042== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMesh -malloc_debug -malloc_dump -memory_info +==1490042== Parent PID: 1488630 +==1490042== +==1490042== +==1490042== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490042== Open file descriptor 12: +==1490042== at 0xE86707D: pipe (pipe.c:29) +==1490042== by 0x18A1D07D: ??? +==1490042== by 0x13FD74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490042== by 0x104C6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490042== by 0x1045FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490042== by 0xF154D38: PetscInitialize (pinit.c:924) +==1490042== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490042== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490042== by 0x1387B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490042== by 0x13323D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490042== by 0x136272: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490042== by 0x136112: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490042== by 0x1367A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490042== by 0x131665: main (TestPottsMesh.cpp:19) +==1490042== +==1490042== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490042== at 0xE86BA1C: __open_nocancel (open64_nocancel.c:39) +==1490042== by 0xE7EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490042== by 0xE49F822: ??? +==1490042== by 0xE49F96F: ??? +==1490042== by 0x1407C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490042== by 0x1407C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490042== by 0x14032922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490042== by 0x13FD72DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490042== by 0x104C6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490042== by 0x1045FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490042== by 0xF154D38: PetscInitialize (pinit.c:924) +==1490042== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490042== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490042== by 0x1387B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490042== by 0x13323D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490042== by 0x136272: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490042== by 0x136112: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490042== by 0x1367A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490042== by 0x131665: main (TestPottsMesh.cpp:19) +==1490042== +==1490042== Open file descriptor 115: +==1490042== +==1490042== +==1490042== Open file descriptor 112: +==1490042== +==1490042== +==1490042== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMesh_valgrind.txt +==1490042== +==1490042== +==1490042== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490042== +==1490042== +==1490042== +==1490042== HEAP SUMMARY: +==1490042== in use at exit: 995,553 bytes in 13,913 blocks +==1490042== total heap usage: 91,412 allocs, 77,499 frees, 1,573,406,815 bytes allocated +==1490042== +==1490042== LEAK SUMMARY: +==1490042== definitely lost: 0 bytes in 0 blocks +==1490042== indirectly lost: 0 bytes in 0 blocks +==1490042== possibly lost: 0 bytes in 0 blocks +==1490042== still reachable: 24 bytes in 2 blocks +==1490042== suppressed: 995,529 bytes in 13,911 blocks +==1490042== Reachable blocks (those to which a pointer was found) are not shown. +==1490042== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490042== +==1490042== For lists of detected and suppressed errors, rerun with: -s +==1490042== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 40) diff --git a/log-files/2024-02-21_13-45-57/TestPottsUpdateRules_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPottsUpdateRules_valgrind.txt new file mode 100644 index 0000000000..01af18d442 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPottsUpdateRules_valgrind.txt @@ -0,0 +1,73 @@ +==1490393== Memcheck, a memory error detector +==1490393== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490393== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490393== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsUpdateRules -malloc_debug -malloc_dump -memory_info +==1490393== Parent PID: 1488630 +==1490393== +==1490393== +==1490393== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490393== Open file descriptor 12: +==1490393== at 0xE79A07D: pipe (pipe.c:29) +==1490393== by 0x18A1E07D: ??? +==1490393== by 0x12F724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490393== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490393== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490393== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1490393== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490393== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490393== by 0x133C55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490393== by 0x12C93D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490393== by 0x12F6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490393== by 0x12F55E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490393== by 0x12FBF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490393== by 0x12AD65: main (TestPottsUpdateRules.cpp:19) +==1490393== +==1490393== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490393== at 0xE79EA1C: __open_nocancel (open64_nocancel.c:39) +==1490393== by 0xE722BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490393== by 0xCBD4822: ??? +==1490393== by 0xCBD496F: ??? +==1490393== by 0x130176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490393== by 0x13017938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490393== by 0x12FCD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490393== by 0x12F722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490393== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490393== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490393== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1490393== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490393== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490393== by 0x133C55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490393== by 0x12C93D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490393== by 0x12F6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490393== by 0x12F55E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490393== by 0x12FBF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490393== by 0x12AD65: main (TestPottsUpdateRules.cpp:19) +==1490393== +==1490393== Open file descriptor 115: +==1490393== +==1490393== +==1490393== Open file descriptor 112: +==1490393== +==1490393== +==1490393== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsUpdateRules_valgrind.txt +==1490393== +==1490393== +==1490393== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490393== +==1490393== +==1490393== +==1490393== HEAP SUMMARY: +==1490393== in use at exit: 995,585 bytes in 13,914 blocks +==1490393== total heap usage: 79,635 allocs, 65,721 frees, 1,573,008,105 bytes allocated +==1490393== +==1490393== LEAK SUMMARY: +==1490393== definitely lost: 0 bytes in 0 blocks +==1490393== indirectly lost: 0 bytes in 0 blocks +==1490393== possibly lost: 0 bytes in 0 blocks +==1490393== still reachable: 56 bytes in 3 blocks +==1490393== suppressed: 995,529 bytes in 13,911 blocks +==1490393== Reachable blocks (those to which a pointer was found) are not shown. +==1490393== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490393== +==1490393== For lists of detected and suppressed errors, rerun with: -s +==1490393== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestProblemDefinitions_valgrind.txt b/log-files/2024-02-21_13-45-57/TestProblemDefinitions_valgrind.txt new file mode 100644 index 0000000000..23994293cf --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestProblemDefinitions_valgrind.txt @@ -0,0 +1,73 @@ +==1489739== Memcheck, a memory error detector +==1489739== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489739== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489739== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestProblemDefinitions -malloc_debug -malloc_dump -memory_info +==1489739== Parent PID: 1488630 +==1489739== +==1489739== +==1489739== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489739== Open file descriptor 12: +==1489739== at 0x6B2B07D: pipe (pipe.c:29) +==1489739== by 0x102C707D: ??? +==1489739== by 0xBC4F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489739== by 0x8516418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489739== by 0x84AFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489739== by 0x7162D38: PetscInitialize (pinit.c:924) +==1489739== by 0x6345153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489739== by 0x63451A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489739== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489739== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489739== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489739== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489739== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489739== by 0x124F95: main (TestProblemDefinitions.cpp:19) +==1489739== +==1489739== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489739== at 0x6B2FA1C: __open_nocancel (open64_nocancel.c:39) +==1489739== by 0x6AB3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489739== by 0x6379822: ??? +==1489739== by 0x637996F: ??? +==1489739== by 0xBCF46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489739== by 0xBCF4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489739== by 0xBCAA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489739== by 0xBC4F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489739== by 0x8516418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489739== by 0x84AFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489739== by 0x7162D38: PetscInitialize (pinit.c:924) +==1489739== by 0x6345153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489739== by 0x63451A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489739== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489739== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489739== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489739== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489739== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489739== by 0x124F95: main (TestProblemDefinitions.cpp:19) +==1489739== +==1489739== Open file descriptor 115: +==1489739== +==1489739== +==1489739== Open file descriptor 112: +==1489739== +==1489739== +==1489739== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestProblemDefinitions_valgrind.txt +==1489739== +==1489739== +==1489739== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489739== +==1489739== +==1489739== +==1489739== HEAP SUMMARY: +==1489739== in use at exit: 995,505 bytes in 13,913 blocks +==1489739== total heap usage: 61,061 allocs, 47,148 frees, 1,571,568,352 bytes allocated +==1489739== +==1489739== LEAK SUMMARY: +==1489739== definitely lost: 0 bytes in 0 blocks +==1489739== indirectly lost: 0 bytes in 0 blocks +==1489739== possibly lost: 0 bytes in 0 blocks +==1489739== still reachable: 24 bytes in 2 blocks +==1489739== suppressed: 995,481 bytes in 13,911 blocks +==1489739== Reachable blocks (those to which a pointer was found) are not shown. +==1489739== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489739== +==1489739== For lists of detected and suppressed errors, rerun with: -s +==1489739== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestProgressReporter_valgrind.txt b/log-files/2024-02-21_13-45-57/TestProgressReporter_valgrind.txt new file mode 100644 index 0000000000..9c31411d7c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestProgressReporter_valgrind.txt @@ -0,0 +1,73 @@ +==1488841== Memcheck, a memory error detector +==1488841== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488841== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488841== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestProgressReporter -malloc_debug -malloc_dump -memory_info +==1488841== Parent PID: 1488630 +==1488841== +==1488841== +==1488841== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488841== Open file descriptor 12: +==1488841== at 0x616B07D: pipe (pipe.c:29) +==1488841== by 0xAEA607D: ??? +==1488841== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488841== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488841== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488841== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488841== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488841== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488841== by 0x118E11: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488841== by 0x11280D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488841== by 0x1150D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488841== by 0x114F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488841== by 0x11560B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488841== by 0x110C35: main (TestProgressReporter.cpp:19) +==1488841== +==1488841== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488841== at 0x616FA1C: __open_nocancel (open64_nocancel.c:39) +==1488841== by 0x60F3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488841== by 0x5CAC822: ??? +==1488841== by 0x5CAC96F: ??? +==1488841== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488841== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488841== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488841== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488841== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488841== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488841== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488841== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488841== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488841== by 0x118E11: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488841== by 0x11280D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488841== by 0x1150D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488841== by 0x114F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488841== by 0x11560B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488841== by 0x110C35: main (TestProgressReporter.cpp:19) +==1488841== +==1488841== Open file descriptor 115: +==1488841== +==1488841== +==1488841== Open file descriptor 112: +==1488841== +==1488841== +==1488841== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestProgressReporter_valgrind.txt +==1488841== +==1488841== +==1488841== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488841== +==1488841== +==1488841== +==1488841== HEAP SUMMARY: +==1488841== in use at exit: 995,073 bytes in 13,913 blocks +==1488841== total heap usage: 57,701 allocs, 43,788 frees, 1,571,342,044 bytes allocated +==1488841== +==1488841== LEAK SUMMARY: +==1488841== definitely lost: 0 bytes in 0 blocks +==1488841== indirectly lost: 0 bytes in 0 blocks +==1488841== possibly lost: 0 bytes in 0 blocks +==1488841== still reachable: 24 bytes in 2 blocks +==1488841== suppressed: 995,049 bytes in 13,911 blocks +==1488841== Reachable blocks (those to which a pointer was found) are not shown. +==1488841== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488841== +==1488841== For lists of detected and suppressed errors, rerun with: -s +==1488841== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestPropagationPropertiesCalculator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPropagationPropertiesCalculator_valgrind.txt new file mode 100644 index 0000000000..b8f3b67d55 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPropagationPropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==1506855== Memcheck, a memory error detector +==1506855== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506855== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506855== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPropagationPropertiesCalculator -malloc_debug -malloc_dump -memory_info +==1506855== Parent PID: 1488630 +==1506855== +==1506855== +==1506855== FILE DESCRIPTORS: 7 open (3 std) at exit. +==1506855== Open file descriptor 115: +==1506855== +==1506855== +==1506855== Open file descriptor 112: +==1506855== +==1506855== +==1506855== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPropagationPropertiesCalculator_valgrind.txt +==1506855== +==1506855== +==1506855== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506855== +==1506855== +==1506855== +==1506855== HEAP SUMMARY: +==1506855== in use at exit: 24 bytes in 2 blocks +==1506855== total heap usage: 14,997,484 allocs, 14,997,482 frees, 9,167,947,503 bytes allocated +==1506855== +==1506855== LEAK SUMMARY: +==1506855== definitely lost: 0 bytes in 0 blocks +==1506855== indirectly lost: 0 bytes in 0 blocks +==1506855== possibly lost: 0 bytes in 0 blocks +==1506855== still reachable: 24 bytes in 2 blocks +==1506855== suppressed: 0 bytes in 0 blocks +==1506855== Reachable blocks (those to which a pointer was found) are not shown. +==1506855== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506855== +==1506855== For lists of detected and suppressed errors, rerun with: -s +==1506855== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-02-21_13-45-57/TestPseudoEcgCalculator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestPseudoEcgCalculator_valgrind.txt new file mode 100644 index 0000000000..075c917dea --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestPseudoEcgCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==1506857== Memcheck, a memory error detector +==1506857== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506857== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506857== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPseudoEcgCalculator -malloc_debug -malloc_dump -memory_info +==1506857== Parent PID: 1488630 +==1506857== +==1506857== +==1506857== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506857== Open file descriptor 12: +==1506857== at 0xB7B407D: pipe (pipe.c:29) +==1506857== by 0x13F9607D: ??? +==1506857== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506857== by 0xBB2F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506857== by 0xBAC8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506857== by 0x9E43D38: PetscInitialize (pinit.c:924) +==1506857== by 0x9D1B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506857== by 0x9D1B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506857== by 0x1233A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506857== by 0x11E38D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506857== by 0x120E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506857== by 0x120CC6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506857== by 0x12135D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506857== by 0x11C615: main (TestPseudoEcgCalculator.cpp:19) +==1506857== +==1506857== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506857== at 0xB7B8A1C: __open_nocancel (open64_nocancel.c:39) +==1506857== by 0xB73CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506857== by 0xB0CD822: ??? +==1506857== by 0xB0CD96F: ??? +==1506857== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506857== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506857== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506857== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506857== by 0xBB2F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506857== by 0xBAC8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506857== by 0x9E43D38: PetscInitialize (pinit.c:924) +==1506857== by 0x9D1B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506857== by 0x9D1B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506857== by 0x1233A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506857== by 0x11E38D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506857== by 0x120E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506857== by 0x120CC6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506857== by 0x12135D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506857== by 0x11C615: main (TestPseudoEcgCalculator.cpp:19) +==1506857== +==1506857== Open file descriptor 115: +==1506857== +==1506857== +==1506857== Open file descriptor 112: +==1506857== +==1506857== +==1506857== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPseudoEcgCalculator_valgrind.txt +==1506857== +==1506857== +==1506857== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506857== +==1506857== +==1506857== +==1506857== HEAP SUMMARY: +==1506857== in use at exit: 996,049 bytes in 13,923 blocks +==1506857== total heap usage: 295,504 allocs, 281,581 frees, 1,606,848,582 bytes allocated +==1506857== +==1506857== LEAK SUMMARY: +==1506857== definitely lost: 0 bytes in 0 blocks +==1506857== indirectly lost: 0 bytes in 0 blocks +==1506857== possibly lost: 0 bytes in 0 blocks +==1506857== still reachable: 24 bytes in 2 blocks +==1506857== suppressed: 996,025 bytes in 13,921 blocks +==1506857== Reachable blocks (those to which a pointer was found) are not shown. +==1506857== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506857== +==1506857== For lists of detected and suppressed errors, rerun with: -s +==1506857== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 38) diff --git a/log-files/2024-02-21_13-45-57/TestQuadraticBasisFunction_valgrind.txt b/log-files/2024-02-21_13-45-57/TestQuadraticBasisFunction_valgrind.txt new file mode 100644 index 0000000000..96189f9aea --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestQuadraticBasisFunction_valgrind.txt @@ -0,0 +1,73 @@ +==1489662== Memcheck, a memory error detector +==1489662== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489662== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489662== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestQuadraticBasisFunction -malloc_debug -malloc_dump -memory_info +==1489662== Parent PID: 1488630 +==1489662== +==1489662== +==1489662== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489662== Open file descriptor 12: +==1489662== at 0x691C07D: pipe (pipe.c:29) +==1489662== by 0x1014507D: ??? +==1489662== by 0xBF8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489662== by 0x8390418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489662== by 0x8329D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489662== by 0x6C6BD38: PetscInitialize (pinit.c:924) +==1489662== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489662== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489662== by 0x12166A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489662== by 0x11D0F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489662== by 0x11F5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489662== by 0x11F4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489662== by 0x11FB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489662== by 0x11B8F5: main (TestQuadraticBasisFunction.cpp:18) +==1489662== +==1489662== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489662== at 0x6920A1C: __open_nocancel (open64_nocancel.c:39) +==1489662== by 0x68A4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489662== by 0x6596822: ??? +==1489662== by 0x659696F: ??? +==1489662== by 0xC0346DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489662== by 0xC034938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489662== by 0xBFEA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489662== by 0xBF8D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489662== by 0x8390418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489662== by 0x8329D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489662== by 0x6C6BD38: PetscInitialize (pinit.c:924) +==1489662== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489662== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489662== by 0x12166A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489662== by 0x11D0F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489662== by 0x11F5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489662== by 0x11F4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489662== by 0x11FB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489662== by 0x11B8F5: main (TestQuadraticBasisFunction.cpp:18) +==1489662== +==1489662== Open file descriptor 115: +==1489662== +==1489662== +==1489662== Open file descriptor 112: +==1489662== +==1489662== +==1489662== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraticBasisFunction_valgrind.txt +==1489662== +==1489662== +==1489662== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489662== +==1489662== +==1489662== +==1489662== HEAP SUMMARY: +==1489662== in use at exit: 995,489 bytes in 13,913 blocks +==1489662== total heap usage: 59,874 allocs, 45,961 frees, 1,571,451,261 bytes allocated +==1489662== +==1489662== LEAK SUMMARY: +==1489662== definitely lost: 0 bytes in 0 blocks +==1489662== indirectly lost: 0 bytes in 0 blocks +==1489662== possibly lost: 0 bytes in 0 blocks +==1489662== still reachable: 24 bytes in 2 blocks +==1489662== suppressed: 995,465 bytes in 13,911 blocks +==1489662== Reachable blocks (those to which a pointer was found) are not shown. +==1489662== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489662== +==1489662== For lists of detected and suppressed errors, rerun with: -s +==1489662== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestQuadraticMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestQuadraticMesh_valgrind.txt new file mode 100644 index 0000000000..ad6905a43a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestQuadraticMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489082== Memcheck, a memory error detector +==1489082== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489082== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489082== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestQuadraticMesh -malloc_debug -malloc_dump -memory_info +==1489082== Parent PID: 1488630 +==1489082== +==1489082== +==1489082== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489082== Open file descriptor 12: +==1489082== at 0x69ED07D: pipe (pipe.c:29) +==1489082== by 0xFD3507D: ??? +==1489082== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489082== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489082== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489082== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489082== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489082== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489082== by 0x12FAA4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489082== by 0x12A6FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489082== by 0x12D700: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489082== by 0x12D5A0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489082== by 0x12DC37: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489082== by 0x128B25: main (TestQuadraticMesh.cpp:19) +==1489082== +==1489082== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489082== at 0x69F1A1C: __open_nocancel (open64_nocancel.c:39) +==1489082== by 0x6975BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489082== by 0x61F7822: ??? +==1489082== by 0x61F796F: ??? +==1489082== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489082== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489082== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489082== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489082== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489082== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489082== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489082== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489082== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489082== by 0x12FAA4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489082== by 0x12A6FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489082== by 0x12D700: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489082== by 0x12D5A0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489082== by 0x12DC37: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489082== by 0x128B25: main (TestQuadraticMesh.cpp:19) +==1489082== +==1489082== Open file descriptor 115: +==1489082== +==1489082== +==1489082== Open file descriptor 112: +==1489082== +==1489082== +==1489082== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraticMesh_valgrind.txt +==1489082== +==1489082== +==1489082== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489082== +==1489082== +==1489082== +==1489082== HEAP SUMMARY: +==1489082== in use at exit: 995,457 bytes in 13,913 blocks +==1489082== total heap usage: 733,559 allocs, 719,646 frees, 1,627,003,119 bytes allocated +==1489082== +==1489082== LEAK SUMMARY: +==1489082== definitely lost: 0 bytes in 0 blocks +==1489082== indirectly lost: 0 bytes in 0 blocks +==1489082== possibly lost: 0 bytes in 0 blocks +==1489082== still reachable: 24 bytes in 2 blocks +==1489082== suppressed: 995,433 bytes in 13,911 blocks +==1489082== Reachable blocks (those to which a pointer was found) are not shown. +==1489082== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489082== +==1489082== For lists of detected and suppressed errors, rerun with: -s +==1489082== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 2273 from 38) diff --git a/log-files/2024-02-21_13-45-57/TestQuadraturePointsGroup_valgrind.txt b/log-files/2024-02-21_13-45-57/TestQuadraturePointsGroup_valgrind.txt new file mode 100644 index 0000000000..74bc197d05 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestQuadraturePointsGroup_valgrind.txt @@ -0,0 +1,73 @@ +==1489663== Memcheck, a memory error detector +==1489663== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489663== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489663== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestQuadraturePointsGroup -malloc_debug -malloc_dump -memory_info +==1489663== Parent PID: 1488630 +==1489663== +==1489663== +==1489663== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489663== Open file descriptor 12: +==1489663== at 0x6C6107D: pipe (pipe.c:29) +==1489663== by 0x1014507D: ??? +==1489663== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489663== by 0x86D5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489663== by 0x866ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489663== by 0x6FB0D38: PetscInitialize (pinit.c:924) +==1489663== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489663== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489663== by 0x11DFB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489663== by 0x11972D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489663== by 0x11BD38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489663== by 0x11BBD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489663== by 0x11C26F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489663== by 0x117B55: main (TestQuadraturePointsGroup.cpp:19) +==1489663== +==1489663== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489663== at 0x6C65A1C: __open_nocancel (open64_nocancel.c:39) +==1489663== by 0x6BE9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489663== by 0x6596822: ??? +==1489663== by 0x659696F: ??? +==1489663== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489663== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489663== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489663== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489663== by 0x86D5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489663== by 0x866ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489663== by 0x6FB0D38: PetscInitialize (pinit.c:924) +==1489663== by 0x6562153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489663== by 0x65621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489663== by 0x11DFB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489663== by 0x11972D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489663== by 0x11BD38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489663== by 0x11BBD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489663== by 0x11C26F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489663== by 0x117B55: main (TestQuadraturePointsGroup.cpp:19) +==1489663== +==1489663== Open file descriptor 115: +==1489663== +==1489663== +==1489663== Open file descriptor 112: +==1489663== +==1489663== +==1489663== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraturePointsGroup_valgrind.txt +==1489663== +==1489663== +==1489663== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489663== +==1489663== +==1489663== +==1489663== HEAP SUMMARY: +==1489663== in use at exit: 995,489 bytes in 13,913 blocks +==1489663== total heap usage: 60,938 allocs, 47,025 frees, 1,571,941,566 bytes allocated +==1489663== +==1489663== LEAK SUMMARY: +==1489663== definitely lost: 0 bytes in 0 blocks +==1489663== indirectly lost: 0 bytes in 0 blocks +==1489663== possibly lost: 0 bytes in 0 blocks +==1489663== still reachable: 24 bytes in 2 blocks +==1489663== suppressed: 995,465 bytes in 13,911 blocks +==1489663== Reachable blocks (those to which a pointer was found) are not shown. +==1489663== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489663== +==1489663== For lists of detected and suppressed errors, rerun with: -s +==1489663== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestRKC21IvpOdeSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestRKC21IvpOdeSolver_valgrind.txt new file mode 100644 index 0000000000..c791c4fbef --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestRKC21IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489437== Memcheck, a memory error detector +==1489437== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489437== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489437== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestRKC21IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==1489437== Parent PID: 1488630 +==1489437== +==1489437== +==1489437== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489437== Open file descriptor 12: +==1489437== at 0x503C07D: pipe (pipe.c:29) +==1489437== by 0xB1E807D: ??? +==1489437== by 0x8CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489437== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489437== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489437== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489437== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489437== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489437== by 0x127042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489437== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489437== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489437== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489437== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489437== by 0x11EEA5: main (TestRKC21IvpOdeSolver.cpp:19) +==1489437== +==1489437== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489437== at 0x5040A1C: __open_nocancel (open64_nocancel.c:39) +==1489437== by 0x4FC4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489437== by 0x4B71822: ??? +==1489437== by 0x4B7196F: ??? +==1489437== by 0x8D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489437== by 0x8D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489437== by 0x8D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489437== by 0x8CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489437== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489437== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489437== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489437== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489437== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489437== by 0x127042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489437== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489437== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489437== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489437== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489437== by 0x11EEA5: main (TestRKC21IvpOdeSolver.cpp:19) +==1489437== +==1489437== Open file descriptor 115: +==1489437== +==1489437== +==1489437== Open file descriptor 112: +==1489437== +==1489437== +==1489437== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRKC21IvpOdeSolver_valgrind.txt +==1489437== +==1489437== +==1489437== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489437== +==1489437== +==1489437== +==1489437== HEAP SUMMARY: +==1489437== in use at exit: 995,137 bytes in 13,913 blocks +==1489437== total heap usage: 98,038 allocs, 84,125 frees, 1,572,084,633 bytes allocated +==1489437== +==1489437== LEAK SUMMARY: +==1489437== definitely lost: 0 bytes in 0 blocks +==1489437== indirectly lost: 0 bytes in 0 blocks +==1489437== possibly lost: 0 bytes in 0 blocks +==1489437== still reachable: 24 bytes in 2 blocks +==1489437== suppressed: 995,113 bytes in 13,911 blocks +==1489437== Reachable blocks (those to which a pointer was found) are not shown. +==1489437== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489437== +==1489437== For lists of detected and suppressed errors, rerun with: -s +==1489437== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-02-21_13-45-57/TestRandomNumberGenerator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestRandomNumberGenerator_valgrind.txt new file mode 100644 index 0000000000..c4ad21d95b --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestRandomNumberGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==1488850== Memcheck, a memory error detector +==1488850== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488850== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488850== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestRandomNumberGenerator -malloc_debug -malloc_dump -memory_info +==1488850== Parent PID: 1488630 +==1488850== +==1488850== +==1488850== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488850== Open file descriptor 12: +==1488850== at 0x61AD07D: pipe (pipe.c:29) +==1488850== by 0xAEA607D: ??? +==1488850== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488850== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488850== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488850== by 0x4A8AD38: PetscInitialize (pinit.c:924) +==1488850== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488850== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488850== by 0x122A91: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488850== by 0x11DA0F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488850== by 0x1202C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488850== by 0x1201BD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488850== by 0x1207D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488850== by 0x11C205: main (TestRandomNumberGenerator.cpp:18) +==1488850== +==1488850== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488850== at 0x61B1A1C: __open_nocancel (open64_nocancel.c:39) +==1488850== by 0x6135BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488850== by 0x492E822: ??? +==1488850== by 0x492E96F: ??? +==1488850== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488850== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488850== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488850== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488850== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488850== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488850== by 0x4A8AD38: PetscInitialize (pinit.c:924) +==1488850== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488850== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488850== by 0x122A91: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488850== by 0x11DA0F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488850== by 0x1202C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488850== by 0x1201BD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488850== by 0x1207D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488850== by 0x11C205: main (TestRandomNumberGenerator.cpp:18) +==1488850== +==1488850== Open file descriptor 115: +==1488850== +==1488850== +==1488850== Open file descriptor 112: +==1488850== +==1488850== +==1488850== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRandomNumberGenerator_valgrind.txt +==1488850== +==1488850== +==1488850== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488850== +==1488850== +==1488850== +==1488850== HEAP SUMMARY: +==1488850== in use at exit: 997,625 bytes in 13,914 blocks +==1488850== total heap usage: 57,688 allocs, 43,774 frees, 1,571,331,532 bytes allocated +==1488850== +==1488850== LEAK SUMMARY: +==1488850== definitely lost: 0 bytes in 0 blocks +==1488850== indirectly lost: 0 bytes in 0 blocks +==1488850== possibly lost: 0 bytes in 0 blocks +==1488850== still reachable: 2,576 bytes in 3 blocks +==1488850== suppressed: 995,049 bytes in 13,911 blocks +==1488850== Reachable blocks (those to which a pointer was found) are not shown. +==1488850== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488850== +==1488850== For lists of detected and suppressed errors, rerun with: -s +==1488850== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestReplicatableVector_valgrind.txt b/log-files/2024-02-21_13-45-57/TestReplicatableVector_valgrind.txt new file mode 100644 index 0000000000..0071ff5a42 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestReplicatableVector_valgrind.txt @@ -0,0 +1,73 @@ +==1488851== Memcheck, a memory error detector +==1488851== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488851== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488851== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestReplicatableVector -malloc_debug -malloc_dump -memory_info +==1488851== Parent PID: 1488630 +==1488851== +==1488851== +==1488851== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488851== Open file descriptor 12: +==1488851== at 0x603407D: pipe (pipe.c:29) +==1488851== by 0xAEA607D: ??? +==1488851== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488851== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488851== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488851== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488851== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488851== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488851== by 0x1121BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488851== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488851== by 0x110288: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488851== by 0x110183: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488851== by 0x110797: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488851== by 0x10C555: main (TestReplicatableVector.cpp:18) +==1488851== +==1488851== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488851== at 0x6038A1C: __open_nocancel (open64_nocancel.c:39) +==1488851== by 0x5FBCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488851== by 0x5CAC822: ??? +==1488851== by 0x5CAC96F: ??? +==1488851== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488851== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488851== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488851== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488851== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488851== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488851== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488851== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488851== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488851== by 0x1121BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488851== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488851== by 0x110288: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488851== by 0x110183: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488851== by 0x110797: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488851== by 0x10C555: main (TestReplicatableVector.cpp:18) +==1488851== +==1488851== Open file descriptor 115: +==1488851== +==1488851== +==1488851== Open file descriptor 112: +==1488851== +==1488851== +==1488851== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestReplicatableVector_valgrind.txt +==1488851== +==1488851== +==1488851== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488851== +==1488851== +==1488851== +==1488851== HEAP SUMMARY: +==1488851== in use at exit: 995,073 bytes in 13,913 blocks +==1488851== total heap usage: 60,157 allocs, 46,244 frees, 1,571,690,579 bytes allocated +==1488851== +==1488851== LEAK SUMMARY: +==1488851== definitely lost: 0 bytes in 0 blocks +==1488851== indirectly lost: 0 bytes in 0 blocks +==1488851== possibly lost: 0 bytes in 0 blocks +==1488851== still reachable: 24 bytes in 2 blocks +==1488851== suppressed: 995,049 bytes in 13,911 blocks +==1488851== Reachable blocks (those to which a pointer was found) are not shown. +==1488851== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488851== +==1488851== For lists of detected and suppressed errors, rerun with: -s +==1488851== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestRestitutionStimuli_valgrind.txt b/log-files/2024-02-21_13-45-57/TestRestitutionStimuli_valgrind.txt new file mode 100644 index 0000000000..ac99c3a324 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestRestitutionStimuli_valgrind.txt @@ -0,0 +1,73 @@ +==1506902== Memcheck, a memory error detector +==1506902== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506902== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506902== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestRestitutionStimuli -malloc_debug -malloc_dump -memory_info +==1506902== Parent PID: 1488630 +==1506902== +==1506902== +==1506902== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506902== Open file descriptor 12: +==1506902== at 0x9A6907D: pipe (pipe.c:29) +==1506902== by 0x13F9707D: ??? +==1506902== by 0xEA934CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506902== by 0x969C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506902== by 0x9635D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506902== by 0x832CD38: PetscInitialize (pinit.c:924) +==1506902== by 0x819A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506902== by 0x819A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506902== by 0x1227E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1506902== by 0x11DA5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506902== by 0x12049C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506902== by 0x12033C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506902== by 0x1209D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506902== by 0x11BE85: main (TestRestitutionStimuli.cpp:19) +==1506902== +==1506902== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506902== at 0x9A6DA1C: __open_nocancel (open64_nocancel.c:39) +==1506902== by 0x99F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506902== by 0x81CE822: ??? +==1506902== by 0x81CE96F: ??? +==1506902== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506902== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506902== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506902== by 0xEA932DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506902== by 0x969C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506902== by 0x9635D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506902== by 0x832CD38: PetscInitialize (pinit.c:924) +==1506902== by 0x819A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506902== by 0x819A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506902== by 0x1227E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1506902== by 0x11DA5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506902== by 0x12049C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506902== by 0x12033C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506902== by 0x1209D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506902== by 0x11BE85: main (TestRestitutionStimuli.cpp:19) +==1506902== +==1506902== Open file descriptor 115: +==1506902== +==1506902== +==1506902== Open file descriptor 112: +==1506902== +==1506902== +==1506902== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRestitutionStimuli_valgrind.txt +==1506902== +==1506902== +==1506902== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506902== +==1506902== +==1506902== +==1506902== HEAP SUMMARY: +==1506902== in use at exit: 995,569 bytes in 13,913 blocks +==1506902== total heap usage: 61,752 allocs, 47,839 frees, 1,571,651,257 bytes allocated +==1506902== +==1506902== LEAK SUMMARY: +==1506902== definitely lost: 0 bytes in 0 blocks +==1506902== indirectly lost: 0 bytes in 0 blocks +==1506902== possibly lost: 0 bytes in 0 blocks +==1506902== still reachable: 24 bytes in 2 blocks +==1506902== suppressed: 995,545 bytes in 13,911 blocks +==1506902== Reachable blocks (those to which a pointer was found) are not shown. +==1506902== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506902== +==1506902== For lists of detected and suppressed errors, rerun with: -s +==1506902== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt new file mode 100644 index 0000000000..70e604d607 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489443== Memcheck, a memory error detector +==1489443== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489443== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489443== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestRungeKuttaFehlbergIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==1489443== Parent PID: 1488630 +==1489443== +==1489443== +==1489443== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489443== Open file descriptor 12: +==1489443== at 0x64F307D: pipe (pipe.c:29) +==1489443== by 0xB1E607D: ??? +==1489443== by 0x8CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489443== by 0x603F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489443== by 0x5FD8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489443== by 0x4CCFD38: PetscInitialize (pinit.c:924) +==1489443== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489443== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489443== by 0x129E27: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489443== by 0x123D15: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489443== by 0x126B50: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489443== by 0x1269F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489443== by 0x127087: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489443== by 0x121085: main (TestRungeKuttaFehlbergIvpOdeSolver.cpp:19) +==1489443== +==1489443== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489443== at 0x64F7A1C: __open_nocancel (open64_nocancel.c:39) +==1489443== by 0x647BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489443== by 0x4B71822: ??? +==1489443== by 0x4B7196F: ??? +==1489443== by 0x8D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489443== by 0x8D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489443== by 0x8D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489443== by 0x8CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489443== by 0x603F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489443== by 0x5FD8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489443== by 0x4CCFD38: PetscInitialize (pinit.c:924) +==1489443== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489443== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489443== by 0x129E27: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489443== by 0x123D15: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489443== by 0x126B50: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489443== by 0x1269F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489443== by 0x127087: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489443== by 0x121085: main (TestRungeKuttaFehlbergIvpOdeSolver.cpp:19) +==1489443== +==1489443== Open file descriptor 115: +==1489443== +==1489443== +==1489443== Open file descriptor 112: +==1489443== +==1489443== +==1489443== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt +==1489443== +==1489443== +==1489443== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489443== +==1489443== +==1489443== +==1489443== HEAP SUMMARY: +==1489443== in use at exit: 995,137 bytes in 13,913 blocks +==1489443== total heap usage: 58,421 allocs, 44,508 frees, 1,571,323,113 bytes allocated +==1489443== +==1489443== LEAK SUMMARY: +==1489443== definitely lost: 0 bytes in 0 blocks +==1489443== indirectly lost: 0 bytes in 0 blocks +==1489443== possibly lost: 0 bytes in 0 blocks +==1489443== still reachable: 24 bytes in 2 blocks +==1489443== suppressed: 995,113 bytes in 13,911 blocks +==1489443== Reachable blocks (those to which a pointer was found) are not shown. +==1489443== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489443== +==1489443== For lists of detected and suppressed errors, rerun with: -s +==1489443== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt new file mode 100644 index 0000000000..2592747e1d --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1503880== Memcheck, a memory error detector +==1503880== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1503880== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1503880== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningContactInhibitionSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==1503880== Parent PID: 1488630 +==1503880== +==1503880== +==1503880== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1503880== Open file descriptor 12: +==1503880== at 0x1010807D: pipe (pipe.c:29) +==1503880== by 0x18A1D07D: ??? +==1503880== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503880== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503880== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503880== by 0xE593D38: PetscInitialize (pinit.c:924) +==1503880== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503880== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503880== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1503880== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503880== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503880== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503880== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503880== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) +==1503880== +==1503880== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1503880== at 0x1010CA1C: __open_nocancel (open64_nocancel.c:39) +==1503880== by 0x10090BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1503880== by 0xF81D822: ??? +==1503880== by 0xF81D96F: ??? +==1503880== by 0x140296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503880== by 0x14029938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503880== by 0x13FDF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503880== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503880== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503880== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503880== by 0xE593D38: PetscInitialize (pinit.c:924) +==1503880== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503880== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503880== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1503880== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503880== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503880== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503880== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503880== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) +==1503880== +==1503880== Open file descriptor 115: +==1503880== +==1503880== +==1503880== Open file descriptor 112: +==1503880== +==1503880== +==1503880== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt +==1503880== +==1503880== +==1503880== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1503880== +==1503880== +==1503880== +==1503880== HEAP SUMMARY: +==1503880== in use at exit: 995,526 bytes in 13,910 blocks +==1503880== total heap usage: 11,091,839 allocs, 11,077,929 frees, 5,000,621,022 bytes allocated +==1503880== +==1503880== LEAK SUMMARY: +==1503880== definitely lost: 0 bytes in 0 blocks +==1503880== indirectly lost: 0 bytes in 0 blocks +==1503880== possibly lost: 0 bytes in 0 blocks +==1503880== still reachable: 56 bytes in 3 blocks +==1503880== suppressed: 995,470 bytes in 13,907 blocks +==1503880== Reachable blocks (those to which a pointer was found) are not shown. +==1503880== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1503880== +==1503880== For lists of detected and suppressed errors, rerun with: -s +==1503880== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt new file mode 100644 index 0000000000..b28c0d6668 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1504544== Memcheck, a memory error detector +==1504544== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504544== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504544== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info +==1504544== Parent PID: 1488630 +==1504544== +==1504544== +==1504544== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504544== Open file descriptor 12: +==1504544== at 0x118E107D: pipe (pipe.c:29) +==1504544== by 0x1A6DF07D: ??? +==1504544== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504544== by 0x111E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504544== by 0x11182D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504544== by 0xFE53D38: PetscInitialize (pinit.c:924) +==1504544== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504544== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504544== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504544== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504544== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504544== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504544== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504544== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) +==1504544== +==1504544== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504544== at 0x118E5A1C: __open_nocancel (open64_nocancel.c:39) +==1504544== by 0x11869BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504544== by 0x110DD822: ??? +==1504544== by 0x110DD96F: ??? +==1504544== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504544== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504544== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504544== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504544== by 0x111E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504544== by 0x11182D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504544== by 0xFE53D38: PetscInitialize (pinit.c:924) +==1504544== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504544== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504544== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504544== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504544== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504544== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504544== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504544== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) +==1504544== +==1504544== Open file descriptor 115: +==1504544== +==1504544== +==1504544== Open file descriptor 112: +==1504544== +==1504544== +==1504544== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt +==1504544== +==1504544== +==1504544== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504544== +==1504544== +==1504544== +==1504544== HEAP SUMMARY: +==1504544== in use at exit: 995,542 bytes in 13,910 blocks +==1504544== total heap usage: 16,198,351 allocs, 16,184,441 frees, 3,062,968,491 bytes allocated +==1504544== +==1504544== LEAK SUMMARY: +==1504544== definitely lost: 0 bytes in 0 blocks +==1504544== indirectly lost: 0 bytes in 0 blocks +==1504544== possibly lost: 0 bytes in 0 blocks +==1504544== still reachable: 56 bytes in 3 blocks +==1504544== suppressed: 995,486 bytes in 13,907 blocks +==1504544== Reachable blocks (those to which a pointer was found) are not shown. +==1504544== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504544== +==1504544== For lists of detected and suppressed errors, rerun with: -s +==1504544== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt new file mode 100644 index 0000000000..5e84ef599c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1503948== Memcheck, a memory error detector +==1503948== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1503948== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1503948== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==1503948== Parent PID: 1488630 +==1503948== +==1503948== +==1503948== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1503948== Open file descriptor 12: +==1503948== at 0xEB6A07D: pipe (pipe.c:29) +==1503948== by 0x18A1D07D: ??? +==1503948== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503948== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503948== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503948== by 0xF49BD38: PetscInitialize (pinit.c:924) +==1503948== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503948== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503948== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1503948== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503948== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503948== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503948== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503948== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) +==1503948== +==1503948== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1503948== at 0xEB6EA1C: __open_nocancel (open64_nocancel.c:39) +==1503948== by 0xEAF2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1503948== by 0xE49F822: ??? +==1503948== by 0xE49F96F: ??? +==1503948== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503948== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503948== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503948== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503948== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503948== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503948== by 0xF49BD38: PetscInitialize (pinit.c:924) +==1503948== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503948== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503948== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1503948== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503948== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503948== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503948== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503948== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) +==1503948== +==1503948== Open file descriptor 115: +==1503948== +==1503948== +==1503948== Open file descriptor 112: +==1503948== +==1503948== +==1503948== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt +==1503948== +==1503948== +==1503948== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1503948== +==1503948== +==1503948== +==1503948== HEAP SUMMARY: +==1503948== in use at exit: 995,526 bytes in 13,910 blocks +==1503948== total heap usage: 5,189,098 allocs, 5,175,188 frees, 2,011,333,646 bytes allocated +==1503948== +==1503948== LEAK SUMMARY: +==1503948== definitely lost: 0 bytes in 0 blocks +==1503948== indirectly lost: 0 bytes in 0 blocks +==1503948== possibly lost: 0 bytes in 0 blocks +==1503948== still reachable: 56 bytes in 3 blocks +==1503948== suppressed: 995,470 bytes in 13,907 blocks +==1503948== Reachable blocks (those to which a pointer was found) are not shown. +==1503948== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1503948== +==1503948== For lists of detected and suppressed errors, rerun with: -s +==1503948== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt new file mode 100644 index 0000000000..01c903fee4 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1503978== Memcheck, a memory error detector +==1503978== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1503978== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1503978== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDifferentialAdhesionSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==1503978== Parent PID: 1488630 +==1503978== +==1503978== +==1503978== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1503978== Open file descriptor 12: +==1503978== at 0x1002107D: pipe (pipe.c:29) +==1503978== by 0x18A1D07D: ??? +==1503978== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503978== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503978== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503978== by 0xE593D38: PetscInitialize (pinit.c:924) +==1503978== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503978== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503978== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1503978== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503978== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503978== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503978== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503978== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) +==1503978== +==1503978== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1503978== at 0x10025A1C: __open_nocancel (open64_nocancel.c:39) +==1503978== by 0xFFA9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1503978== by 0xF81D822: ??? +==1503978== by 0xF81D96F: ??? +==1503978== by 0x140296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503978== by 0x14029938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503978== by 0x13FDF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1503978== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1503978== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503978== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1503978== by 0xE593D38: PetscInitialize (pinit.c:924) +==1503978== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1503978== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1503978== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1503978== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1503978== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1503978== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1503978== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1503978== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) +==1503978== +==1503978== Open file descriptor 115: +==1503978== +==1503978== +==1503978== Open file descriptor 112: +==1503978== +==1503978== +==1503978== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt +==1503978== +==1503978== +==1503978== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1503978== +==1503978== +==1503978== +==1503978== HEAP SUMMARY: +==1503978== in use at exit: 995,542 bytes in 13,911 blocks +==1503978== total heap usage: 2,576,864 allocs, 2,562,953 frees, 1,696,967,541 bytes allocated +==1503978== +==1503978== LEAK SUMMARY: +==1503978== definitely lost: 0 bytes in 0 blocks +==1503978== indirectly lost: 0 bytes in 0 blocks +==1503978== possibly lost: 0 bytes in 0 blocks +==1503978== still reachable: 72 bytes in 4 blocks +==1503978== suppressed: 995,470 bytes in 13,907 blocks +==1503978== Reachable blocks (those to which a pointer was found) are not shown. +==1503978== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1503978== +==1503978== For lists of detected and suppressed errors, rerun with: -s +==1503978== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt new file mode 100644 index 0000000000..f5d0128b6e --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1504666== Memcheck, a memory error detector +==1504666== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504666== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504666== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==1504666== Parent PID: 1488630 +==1504666== +==1504666== +==1504666== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504666== Open file descriptor 12: +==1504666== at 0x118E107D: pipe (pipe.c:29) +==1504666== by 0x1A6DF07D: ??? +==1504666== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504666== by 0x111E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504666== by 0x11182D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504666== by 0xFE53D38: PetscInitialize (pinit.c:924) +==1504666== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504666== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504666== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504666== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504666== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504666== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504666== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504666== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) +==1504666== +==1504666== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504666== at 0x118E5A1C: __open_nocancel (open64_nocancel.c:39) +==1504666== by 0x11869BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504666== by 0x110DD822: ??? +==1504666== by 0x110DD96F: ??? +==1504666== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504666== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504666== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504666== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504666== by 0x111E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504666== by 0x11182D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504666== by 0xFE53D38: PetscInitialize (pinit.c:924) +==1504666== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504666== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504666== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504666== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504666== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504666== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504666== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504666== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) +==1504666== +==1504666== Open file descriptor 115: +==1504666== +==1504666== +==1504666== Open file descriptor 112: +==1504666== +==1504666== +==1504666== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt +==1504666== +==1504666== +==1504666== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504666== +==1504666== +==1504666== +==1504666== HEAP SUMMARY: +==1504666== in use at exit: 995,542 bytes in 13,910 blocks +==1504666== total heap usage: 1,765,967 allocs, 1,752,057 frees, 1,748,050,031 bytes allocated +==1504666== +==1504666== LEAK SUMMARY: +==1504666== definitely lost: 0 bytes in 0 blocks +==1504666== indirectly lost: 0 bytes in 0 blocks +==1504666== possibly lost: 0 bytes in 0 blocks +==1504666== still reachable: 56 bytes in 3 blocks +==1504666== suppressed: 995,486 bytes in 13,907 blocks +==1504666== Reachable blocks (those to which a pointer was found) are not shown. +==1504666== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504666== +==1504666== For lists of detected and suppressed errors, rerun with: -s +==1504666== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestRunningMeshBasedSimulationsTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestRunningMeshBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 0000000000..d068655801 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestRunningMeshBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1504048== Memcheck, a memory error detector +==1504048== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504048== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504048== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==1504048== Parent PID: 1488630 +==1504048== +==1504048== +==1504048== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504048== Open file descriptor 12: +==1504048== at 0x1002107D: pipe (pipe.c:29) +==1504048== by 0x18A1D07D: ??? +==1504048== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504048== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504048== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504048== by 0xE593D38: PetscInitialize (pinit.c:924) +==1504048== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504048== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504048== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504048== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504048== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504048== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504048== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504048== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) +==1504048== +==1504048== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504048== at 0x10025A1C: __open_nocancel (open64_nocancel.c:39) +==1504048== by 0xFFA9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504048== by 0xF81D822: ??? +==1504048== by 0xF81D96F: ??? +==1504048== by 0x140296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504048== by 0x14029938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504048== by 0x13FDF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504048== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504048== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504048== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504048== by 0xE593D38: PetscInitialize (pinit.c:924) +==1504048== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504048== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504048== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504048== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504048== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504048== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504048== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504048== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) +==1504048== +==1504048== Open file descriptor 115: +==1504048== +==1504048== +==1504048== Open file descriptor 112: +==1504048== +==1504048== +==1504048== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt +==1504048== +==1504048== +==1504048== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504048== +==1504048== +==1504048== +==1504048== HEAP SUMMARY: +==1504048== in use at exit: 995,526 bytes in 13,910 blocks +==1504048== total heap usage: 3,349,919 allocs, 3,336,009 frees, 2,500,219,049 bytes allocated +==1504048== +==1504048== LEAK SUMMARY: +==1504048== definitely lost: 0 bytes in 0 blocks +==1504048== indirectly lost: 0 bytes in 0 blocks +==1504048== possibly lost: 0 bytes in 0 blocks +==1504048== still reachable: 56 bytes in 3 blocks +==1504048== suppressed: 995,470 bytes in 13,907 blocks +==1504048== Reachable blocks (those to which a pointer was found) are not shown. +==1504048== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504048== +==1504048== For lists of detected and suppressed errors, rerun with: -s +==1504048== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestRunningNodeBasedSimulationsTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestRunningNodeBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 0000000000..40ae8baa43 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestRunningNodeBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1504052== Memcheck, a memory error detector +==1504052== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504052== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504052== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==1504052== Parent PID: 1488630 +==1504052== +==1504052== +==1504052== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504052== Open file descriptor 12: +==1504052== at 0xEC5107D: pipe (pipe.c:29) +==1504052== by 0x18A1D07D: ??? +==1504052== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504052== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504052== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504052== by 0xF582D38: PetscInitialize (pinit.c:924) +==1504052== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504052== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504052== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504052== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504052== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504052== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504052== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504052== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) +==1504052== +==1504052== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504052== at 0xEC55A1C: __open_nocancel (open64_nocancel.c:39) +==1504052== by 0xEBD9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504052== by 0xE49F822: ??? +==1504052== by 0xE49F96F: ??? +==1504052== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504052== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504052== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504052== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504052== by 0x108F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504052== by 0x1088BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504052== by 0xF582D38: PetscInitialize (pinit.c:924) +==1504052== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504052== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504052== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504052== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504052== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504052== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504052== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504052== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) +==1504052== +==1504052== Open file descriptor 115: +==1504052== +==1504052== +==1504052== Open file descriptor 112: +==1504052== +==1504052== +==1504052== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt +==1504052== +==1504052== +==1504052== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504052== +==1504052== +==1504052== +==1504052== HEAP SUMMARY: +==1504052== in use at exit: 995,585 bytes in 13,914 blocks +==1504052== total heap usage: 684,482 allocs, 670,568 frees, 1,958,501,771 bytes allocated +==1504052== +==1504052== LEAK SUMMARY: +==1504052== definitely lost: 0 bytes in 0 blocks +==1504052== indirectly lost: 0 bytes in 0 blocks +==1504052== possibly lost: 0 bytes in 0 blocks +==1504052== still reachable: 56 bytes in 3 blocks +==1504052== suppressed: 995,529 bytes in 13,911 blocks +==1504052== Reachable blocks (those to which a pointer was found) are not shown. +==1504052== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504052== +==1504052== For lists of detected and suppressed errors, rerun with: -s +==1504052== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestRunningPottsBasedSimulationsTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestRunningPottsBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 0000000000..df91b93980 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestRunningPottsBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1504081== Memcheck, a memory error detector +==1504081== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504081== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504081== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==1504081== Parent PID: 1488630 +==1504081== +==1504081== +==1504081== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504081== Open file descriptor 12: +==1504081== at 0xD2A107D: pipe (pipe.c:29) +==1504081== by 0x18A1D07D: ??? +==1504081== by 0x1402B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504081== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504081== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504081== by 0xF49BD38: PetscInitialize (pinit.c:924) +==1504081== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504081== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504081== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504081== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504081== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504081== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504081== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504081== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) +==1504081== +==1504081== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504081== at 0xD2A5A1C: __open_nocancel (open64_nocancel.c:39) +==1504081== by 0xD229BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504081== by 0xCBD4822: ??? +==1504081== by 0xCBD496F: ??? +==1504081== by 0x140D06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504081== by 0x140D0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504081== by 0x14086922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504081== by 0x1402B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504081== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504081== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504081== by 0xF49BD38: PetscInitialize (pinit.c:924) +==1504081== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504081== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504081== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504081== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504081== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504081== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504081== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504081== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) +==1504081== +==1504081== Open file descriptor 115: +==1504081== +==1504081== +==1504081== Open file descriptor 112: +==1504081== +==1504081== +==1504081== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt +==1504081== +==1504081== +==1504081== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504081== +==1504081== +==1504081== +==1504081== HEAP SUMMARY: +==1504081== in use at exit: 995,526 bytes in 13,910 blocks +==1504081== total heap usage: 40,699,012 allocs, 40,685,102 frees, 4,063,521,387 bytes allocated +==1504081== +==1504081== LEAK SUMMARY: +==1504081== definitely lost: 0 bytes in 0 blocks +==1504081== indirectly lost: 0 bytes in 0 blocks +==1504081== possibly lost: 0 bytes in 0 blocks +==1504081== still reachable: 56 bytes in 3 blocks +==1504081== suppressed: 995,470 bytes in 13,907 blocks +==1504081== Reachable blocks (those to which a pointer was found) are not shown. +==1504081== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504081== +==1504081== For lists of detected and suppressed errors, rerun with: -s +==1504081== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt new file mode 100644 index 0000000000..450056b514 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1504129== Memcheck, a memory error detector +==1504129== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504129== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504129== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==1504129== Parent PID: 1488630 +==1504129== +==1504129== +==1504129== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504129== Open file descriptor 12: +==1504129== at 0xEF0707D: pipe (pipe.c:29) +==1504129== by 0x18A1D07D: ??? +==1504129== by 0x140294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504129== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504129== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504129== by 0xF499D38: PetscInitialize (pinit.c:924) +==1504129== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504129== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504129== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504129== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504129== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504129== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504129== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504129== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) +==1504129== +==1504129== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504129== at 0xEF0BA1C: __open_nocancel (open64_nocancel.c:39) +==1504129== by 0xEE8FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504129== by 0xE83C822: ??? +==1504129== by 0xE83C96F: ??? +==1504129== by 0x140CE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504129== by 0x140CE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504129== by 0x14084922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504129== by 0x140292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504129== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504129== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504129== by 0xF499D38: PetscInitialize (pinit.c:924) +==1504129== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504129== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504129== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504129== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504129== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504129== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504129== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504129== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) +==1504129== +==1504129== Open file descriptor 115: +==1504129== +==1504129== +==1504129== Open file descriptor 112: +==1504129== +==1504129== +==1504129== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt +==1504129== +==1504129== +==1504129== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504129== +==1504129== +==1504129== +==1504129== HEAP SUMMARY: +==1504129== in use at exit: 995,526 bytes in 13,910 blocks +==1504129== total heap usage: 2,096,314 allocs, 2,082,404 frees, 1,907,906,292 bytes allocated +==1504129== +==1504129== LEAK SUMMARY: +==1504129== definitely lost: 0 bytes in 0 blocks +==1504129== indirectly lost: 0 bytes in 0 blocks +==1504129== possibly lost: 0 bytes in 0 blocks +==1504129== still reachable: 56 bytes in 3 blocks +==1504129== suppressed: 995,470 bytes in 13,907 blocks +==1504129== Reachable blocks (those to which a pointer was found) are not shown. +==1504129== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504129== +==1504129== For lists of detected and suppressed errors, rerun with: -s +==1504129== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt new file mode 100644 index 0000000000..48da9e82ca --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1504740== Memcheck, a memory error detector +==1504740== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504740== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504740== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==1504740== Parent PID: 1488630 +==1504740== +==1504740== +==1504740== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504740== Open file descriptor 12: +==1504740== at 0x118E107D: pipe (pipe.c:29) +==1504740== by 0x1A6DF07D: ??? +==1504740== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504740== by 0x111E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504740== by 0x11182D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504740== by 0xFE53D38: PetscInitialize (pinit.c:924) +==1504740== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504740== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504740== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504740== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504740== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504740== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504740== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504740== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) +==1504740== +==1504740== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504740== at 0x118E5A1C: __open_nocancel (open64_nocancel.c:39) +==1504740== by 0x11869BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504740== by 0x110DD822: ??? +==1504740== by 0x110DD96F: ??? +==1504740== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504740== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504740== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504740== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504740== by 0x111E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504740== by 0x11182D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504740== by 0xFE53D38: PetscInitialize (pinit.c:924) +==1504740== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504740== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504740== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504740== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504740== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504740== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504740== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504740== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) +==1504740== +==1504740== Open file descriptor 115: +==1504740== +==1504740== +==1504740== Open file descriptor 112: +==1504740== +==1504740== +==1504740== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt +==1504740== +==1504740== +==1504740== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504740== +==1504740== +==1504740== +==1504740== HEAP SUMMARY: +==1504740== in use at exit: 995,681 bytes in 13,915 blocks +==1504740== total heap usage: 1,630,925 allocs, 1,617,010 frees, 1,691,797,266 bytes allocated +==1504740== +==1504740== LEAK SUMMARY: +==1504740== definitely lost: 0 bytes in 0 blocks +==1504740== indirectly lost: 0 bytes in 0 blocks +==1504740== possibly lost: 0 bytes in 0 blocks +==1504740== still reachable: 136 bytes in 4 blocks +==1504740== suppressed: 995,545 bytes in 13,911 blocks +==1504740== Reachable blocks (those to which a pointer was found) are not shown. +==1504740== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504740== +==1504740== For lists of detected and suppressed errors, rerun with: -s +==1504740== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestRunningVertexBasedSimulationsTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestRunningVertexBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 0000000000..06ff5dc8b6 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestRunningVertexBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1504142== Memcheck, a memory error detector +==1504142== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504142== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504142== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==1504142== Parent PID: 1488630 +==1504142== +==1504142== +==1504142== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504142== Open file descriptor 12: +==1504142== at 0x1010807D: pipe (pipe.c:29) +==1504142== by 0x18A1D07D: ??? +==1504142== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504142== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504142== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504142== by 0xE593D38: PetscInitialize (pinit.c:924) +==1504142== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504142== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504142== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504142== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504142== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504142== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504142== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504142== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) +==1504142== +==1504142== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504142== at 0x1010CA1C: __open_nocancel (open64_nocancel.c:39) +==1504142== by 0x10090BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504142== by 0xF81D822: ??? +==1504142== by 0xF81D96F: ??? +==1504142== by 0x140296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504142== by 0x14029938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504142== by 0x13FDF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504142== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504142== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504142== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504142== by 0xE593D38: PetscInitialize (pinit.c:924) +==1504142== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504142== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504142== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504142== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504142== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504142== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504142== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504142== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) +==1504142== +==1504142== Open file descriptor 115: +==1504142== +==1504142== +==1504142== Open file descriptor 112: +==1504142== +==1504142== +==1504142== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt +==1504142== +==1504142== +==1504142== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504142== +==1504142== +==1504142== +==1504142== HEAP SUMMARY: +==1504142== in use at exit: 995,526 bytes in 13,910 blocks +==1504142== total heap usage: 1,411,487 allocs, 1,397,577 frees, 1,631,571,665 bytes allocated +==1504142== +==1504142== LEAK SUMMARY: +==1504142== definitely lost: 0 bytes in 0 blocks +==1504142== indirectly lost: 0 bytes in 0 blocks +==1504142== possibly lost: 0 bytes in 0 blocks +==1504142== still reachable: 56 bytes in 3 blocks +==1504142== suppressed: 995,470 bytes in 13,907 blocks +==1504142== Reachable blocks (those to which a pointer was found) are not shown. +==1504142== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504142== +==1504142== For lists of detected and suppressed errors, rerun with: -s +==1504142== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestRushLarsen_valgrind.txt b/log-files/2024-02-21_13-45-57/TestRushLarsen_valgrind.txt new file mode 100644 index 0000000000..d7b0532820 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestRushLarsen_valgrind.txt @@ -0,0 +1,73 @@ +==1505990== Memcheck, a memory error detector +==1505990== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505990== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505990== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestRushLarsen -malloc_debug -malloc_dump -memory_info +==1505990== Parent PID: 1488630 +==1505990== +==1505990== +==1505990== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505990== Open file descriptor 12: +==1505990== at 0x9C6A07D: pipe (pipe.c:29) +==1505990== by 0x13F9707D: ??? +==1505990== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505990== by 0x989D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505990== by 0x9836D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505990== by 0x8507D38: PetscInitialize (pinit.c:924) +==1505990== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505990== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505990== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505990== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505990== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505990== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505990== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505990== by 0x114C35: main (TestRushLarsen.cpp:18) +==1505990== +==1505990== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505990== at 0x9C6EA1C: __open_nocancel (open64_nocancel.c:39) +==1505990== by 0x9BF2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505990== by 0x9791822: ??? +==1505990== by 0x979196F: ??? +==1505990== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505990== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505990== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505990== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505990== by 0x989D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505990== by 0x9836D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505990== by 0x8507D38: PetscInitialize (pinit.c:924) +==1505990== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505990== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505990== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505990== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505990== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505990== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505990== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505990== by 0x114C35: main (TestRushLarsen.cpp:18) +==1505990== +==1505990== Open file descriptor 115: +==1505990== +==1505990== +==1505990== Open file descriptor 112: +==1505990== +==1505990== +==1505990== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRushLarsen_valgrind.txt +==1505990== +==1505990== +==1505990== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505990== +==1505990== +==1505990== +==1505990== HEAP SUMMARY: +==1505990== in use at exit: 999,133 bytes in 13,917 blocks +==1505990== total heap usage: 1,064,432 allocs, 1,050,515 frees, 2,011,949,164 bytes allocated +==1505990== +==1505990== LEAK SUMMARY: +==1505990== definitely lost: 0 bytes in 0 blocks +==1505990== indirectly lost: 0 bytes in 0 blocks +==1505990== possibly lost: 0 bytes in 0 blocks +==1505990== still reachable: 3,647 bytes in 10 blocks +==1505990== suppressed: 995,486 bytes in 13,907 blocks +==1505990== Reachable blocks (those to which a pointer was found) are not shown. +==1505990== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505990== +==1505990== For lists of detected and suppressed errors, rerun with: -s +==1505990== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestShovingCaBasedDivisionRules_valgrind.txt b/log-files/2024-02-21_13-45-57/TestShovingCaBasedDivisionRules_valgrind.txt new file mode 100644 index 0000000000..37ad1f9b6b --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestShovingCaBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==1504337== Memcheck, a memory error detector +==1504337== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504337== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504337== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestShovingCaBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==1504337== Parent PID: 1488630 +==1504337== +==1504337== +==1504337== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504337== Open file descriptor 12: +==1504337== at 0x1005A07D: pipe (pipe.c:29) +==1504337== by 0x1A6DF07D: ??? +==1504337== by 0x148324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504337== by 0xF962418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504337== by 0xF8FBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504337== by 0xE5F2D38: PetscInitialize (pinit.c:924) +==1504337== by 0xE462153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504337== by 0xE4621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504337== by 0x12E1A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504337== by 0x128F3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504337== by 0x12B950: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504337== by 0x12B7F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504337== by 0x12BE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504337== by 0x127365: main (TestShovingCaBasedDivisionRules.cpp:19) +==1504337== +==1504337== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504337== at 0x1005EA1C: __open_nocancel (open64_nocancel.c:39) +==1504337== by 0xFFE2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504337== by 0xE496822: ??? +==1504337== by 0xE49696F: ??? +==1504337== by 0x148D76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504337== by 0x148D7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504337== by 0x1488D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504337== by 0x148322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504337== by 0xF962418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504337== by 0xF8FBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504337== by 0xE5F2D38: PetscInitialize (pinit.c:924) +==1504337== by 0xE462153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504337== by 0xE4621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504337== by 0x12E1A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504337== by 0x128F3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504337== by 0x12B950: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504337== by 0x12B7F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504337== by 0x12BE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504337== by 0x127365: main (TestShovingCaBasedDivisionRules.cpp:19) +==1504337== +==1504337== Open file descriptor 115: +==1504337== +==1504337== +==1504337== Open file descriptor 112: +==1504337== +==1504337== +==1504337== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestShovingCaBasedDivisionRules_valgrind.txt +==1504337== +==1504337== +==1504337== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504337== +==1504337== +==1504337== +==1504337== HEAP SUMMARY: +==1504337== in use at exit: 995,617 bytes in 13,915 blocks +==1504337== total heap usage: 69,918 allocs, 56,003 frees, 1,572,241,827 bytes allocated +==1504337== +==1504337== LEAK SUMMARY: +==1504337== definitely lost: 0 bytes in 0 blocks +==1504337== indirectly lost: 0 bytes in 0 blocks +==1504337== possibly lost: 0 bytes in 0 blocks +==1504337== still reachable: 72 bytes in 4 blocks +==1504337== suppressed: 995,545 bytes in 13,911 blocks +==1504337== Reachable blocks (those to which a pointer was found) are not shown. +==1504337== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504337== +==1504337== For lists of detected and suppressed errors, rerun with: -s +==1504337== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestSimpleCellCycleModelsForCrypt_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSimpleCellCycleModelsForCrypt_valgrind.txt new file mode 100644 index 0000000000..1b195ffc55 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSimpleCellCycleModelsForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==1504215== Memcheck, a memory error detector +==1504215== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504215== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504215== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info +==1504215== Parent PID: 1488630 +==1504215== +==1504215== +==1504215== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504215== Open file descriptor 12: +==1504215== at 0x1005A07D: pipe (pipe.c:29) +==1504215== by 0x1A6DF07D: ??? +==1504215== by 0x148324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504215== by 0xF962418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504215== by 0xF8FBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504215== by 0xE5F2D38: PetscInitialize (pinit.c:924) +==1504215== by 0xE462153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504215== by 0xE4621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504215== by 0x186CD7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504215== by 0x17F2CB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504215== by 0x18258E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504215== by 0x18242E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504215== by 0x182AC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504215== by 0x17BBF5: main (TestSimpleCellCycleModelsForCrypt.cpp:19) +==1504215== +==1504215== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504215== at 0x1005EA1C: __open_nocancel (open64_nocancel.c:39) +==1504215== by 0xFFE2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504215== by 0xE496822: ??? +==1504215== by 0xE49696F: ??? +==1504215== by 0x148D76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504215== by 0x148D7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504215== by 0x1488D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504215== by 0x148322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504215== by 0xF962418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504215== by 0xF8FBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504215== by 0xE5F2D38: PetscInitialize (pinit.c:924) +==1504215== by 0xE462153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504215== by 0xE4621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504215== by 0x186CD7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504215== by 0x17F2CB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504215== by 0x18258E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504215== by 0x18242E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504215== by 0x182AC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504215== by 0x17BBF5: main (TestSimpleCellCycleModelsForCrypt.cpp:19) +==1504215== +==1504215== Open file descriptor 115: +==1504215== +==1504215== +==1504215== Open file descriptor 112: +==1504215== +==1504215== +==1504215== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt +==1504215== +==1504215== +==1504215== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504215== +==1504215== +==1504215== +==1504215== HEAP SUMMARY: +==1504215== in use at exit: 995,665 bytes in 13,915 blocks +==1504215== total heap usage: 765,895 allocs, 751,980 frees, 1,605,639,003 bytes allocated +==1504215== +==1504215== LEAK SUMMARY: +==1504215== definitely lost: 0 bytes in 0 blocks +==1504215== indirectly lost: 0 bytes in 0 blocks +==1504215== possibly lost: 0 bytes in 0 blocks +==1504215== still reachable: 120 bytes in 4 blocks +==1504215== suppressed: 995,545 bytes in 13,911 blocks +==1504215== Reachable blocks (those to which a pointer was found) are not shown. +==1504215== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504215== +==1504215== For lists of detected and suppressed errors, rerun with: -s +==1504215== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestSimpleCellCycleModels_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSimpleCellCycleModels_valgrind.txt new file mode 100644 index 0000000000..9bc98d564d --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSimpleCellCycleModels_valgrind.txt @@ -0,0 +1,73 @@ +==1489858== Memcheck, a memory error detector +==1489858== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489858== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489858== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimpleCellCycleModels -malloc_debug -malloc_dump -memory_info +==1489858== Parent PID: 1488630 +==1489858== +==1489858== +==1489858== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489858== Open file descriptor 12: +==1489858== at 0xE45307D: pipe (pipe.c:29) +==1489858== by 0x18A1D07D: ??? +==1489858== by 0x12F724CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489858== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489858== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489858== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1489858== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489858== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489858== by 0x137FA7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489858== by 0x13098F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489858== by 0x133A5C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489858== by 0x1338FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489858== by 0x133F93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489858== by 0x12D2C5: main (TestSimpleCellCycleModels.cpp:19) +==1489858== +==1489858== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489858== at 0xE457A1C: __open_nocancel (open64_nocancel.c:39) +==1489858== by 0xE3DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489858== by 0xCBD4822: ??? +==1489858== by 0xCBD496F: ??? +==1489858== by 0x130176DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489858== by 0x13017938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489858== by 0x12FCD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489858== by 0x12F722DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489858== by 0xE0A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489858== by 0xE03BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489858== by 0xCD32D38: PetscInitialize (pinit.c:924) +==1489858== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489858== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489858== by 0x137FA7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489858== by 0x13098F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489858== by 0x133A5C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489858== by 0x1338FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489858== by 0x133F93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489858== by 0x12D2C5: main (TestSimpleCellCycleModels.cpp:19) +==1489858== +==1489858== Open file descriptor 115: +==1489858== +==1489858== +==1489858== Open file descriptor 112: +==1489858== +==1489858== +==1489858== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModels_valgrind.txt +==1489858== +==1489858== +==1489858== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489858== +==1489858== +==1489858== +==1489858== HEAP SUMMARY: +==1489858== in use at exit: 995,617 bytes in 13,915 blocks +==1489858== total heap usage: 91,055 allocs, 77,140 frees, 1,575,292,627 bytes allocated +==1489858== +==1489858== LEAK SUMMARY: +==1489858== definitely lost: 0 bytes in 0 blocks +==1489858== indirectly lost: 0 bytes in 0 blocks +==1489858== possibly lost: 0 bytes in 0 blocks +==1489858== still reachable: 88 bytes in 4 blocks +==1489858== suppressed: 995,529 bytes in 13,911 blocks +==1489858== Reachable blocks (those to which a pointer was found) are not shown. +==1489858== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489858== +==1489858== For lists of detected and suppressed errors, rerun with: -s +==1489858== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestSimpleDataWriter_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSimpleDataWriter_valgrind.txt new file mode 100644 index 0000000000..6e051060f0 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSimpleDataWriter_valgrind.txt @@ -0,0 +1,73 @@ +==1488926== Memcheck, a memory error detector +==1488926== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488926== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488926== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestSimpleDataWriter -malloc_debug -malloc_dump -memory_info +==1488926== Parent PID: 1488630 +==1488926== +==1488926== +==1488926== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488926== Open file descriptor 12: +==1488926== at 0x61DE07D: pipe (pipe.c:29) +==1488926== by 0xAF1907D: ??? +==1488926== by 0x8A314CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488926== by 0x5E2D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488926== by 0x5DC6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488926== by 0x4A95D38: PetscInitialize (pinit.c:924) +==1488926== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488926== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488926== by 0x11CE43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488926== by 0x11682D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488926== by 0x119106: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488926== by 0x118FA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488926== by 0x11963D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488926== by 0x114C55: main (TestSimpleDataWriter.cpp:19) +==1488926== +==1488926== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488926== at 0x61E2A1C: __open_nocancel (open64_nocancel.c:39) +==1488926== by 0x6166BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488926== by 0x5D1F822: ??? +==1488926== by 0x5D1F96F: ??? +==1488926== by 0x8AD86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488926== by 0x8AD8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488926== by 0x8A8E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488926== by 0x8A312DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488926== by 0x5E2D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488926== by 0x5DC6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488926== by 0x4A95D38: PetscInitialize (pinit.c:924) +==1488926== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488926== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488926== by 0x11CE43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488926== by 0x11682D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488926== by 0x119106: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488926== by 0x118FA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488926== by 0x11963D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488926== by 0x114C55: main (TestSimpleDataWriter.cpp:19) +==1488926== +==1488926== Open file descriptor 115: +==1488926== +==1488926== +==1488926== Open file descriptor 112: +==1488926== +==1488926== +==1488926== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleDataWriter_valgrind.txt +==1488926== +==1488926== +==1488926== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488926== +==1488926== +==1488926== +==1488926== HEAP SUMMARY: +==1488926== in use at exit: 995,089 bytes in 13,913 blocks +==1488926== total heap usage: 57,855 allocs, 43,942 frees, 1,571,438,782 bytes allocated +==1488926== +==1488926== LEAK SUMMARY: +==1488926== definitely lost: 0 bytes in 0 blocks +==1488926== indirectly lost: 0 bytes in 0 blocks +==1488926== possibly lost: 0 bytes in 0 blocks +==1488926== still reachable: 24 bytes in 2 blocks +==1488926== suppressed: 995,065 bytes in 13,911 blocks +==1488926== Reachable blocks (those to which a pointer was found) are not shown. +==1488926== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488926== +==1488926== For lists of detected and suppressed errors, rerun with: -s +==1488926== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestSimpleImpedanceProblem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSimpleImpedanceProblem_valgrind.txt new file mode 100644 index 0000000000..53ac20a822 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSimpleImpedanceProblem_valgrind.txt @@ -0,0 +1,73 @@ +==1504766== Memcheck, a memory error detector +==1504766== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504766== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504766== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestSimpleImpedanceProblem -malloc_debug -malloc_dump -memory_info +==1504766== Parent PID: 1488630 +==1504766== +==1504766== +==1504766== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504766== Open file descriptor 12: +==1504766== at 0x69E207D: pipe (pipe.c:29) +==1504766== by 0x1041407D: ??? +==1504766== by 0xBC944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504766== by 0x7F5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504766== by 0x7EF6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504766== by 0x6BEDD38: PetscInitialize (pinit.c:924) +==1504766== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504766== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504766== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504766== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504766== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504766== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504766== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504766== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) +==1504766== +==1504766== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504766== at 0x69E6A1C: __open_nocancel (open64_nocancel.c:39) +==1504766== by 0x696ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504766== by 0x6317822: ??? +==1504766== by 0x631796F: ??? +==1504766== by 0xBD396DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504766== by 0xBD39938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504766== by 0xBCEF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504766== by 0xBC942DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504766== by 0x7F5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504766== by 0x7EF6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504766== by 0x6BEDD38: PetscInitialize (pinit.c:924) +==1504766== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504766== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504766== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504766== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504766== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504766== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504766== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504766== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) +==1504766== +==1504766== Open file descriptor 115: +==1504766== +==1504766== +==1504766== Open file descriptor 112: +==1504766== +==1504766== +==1504766== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleImpedanceProblem_valgrind.txt +==1504766== +==1504766== +==1504766== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504766== +==1504766== +==1504766== +==1504766== HEAP SUMMARY: +==1504766== in use at exit: 995,494 bytes in 13,909 blocks +==1504766== total heap usage: 7,117,836 allocs, 7,103,927 frees, 1,834,444,219 bytes allocated +==1504766== +==1504766== LEAK SUMMARY: +==1504766== definitely lost: 0 bytes in 0 blocks +==1504766== indirectly lost: 0 bytes in 0 blocks +==1504766== possibly lost: 0 bytes in 0 blocks +==1504766== still reachable: 24 bytes in 2 blocks +==1504766== suppressed: 995,470 bytes in 13,907 blocks +==1504766== Reachable blocks (those to which a pointer was found) are not shown. +==1504766== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504766== +==1504766== For lists of detected and suppressed errors, rerun with: -s +==1504766== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestSimpleLinearEllipticSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSimpleLinearEllipticSolver_valgrind.txt new file mode 100644 index 0000000000..16ea9c2c88 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSimpleLinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489513== Memcheck, a memory error detector +==1489513== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489513== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489513== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleLinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==1489513== Parent PID: 1488630 +==1489513== +==1489513== +==1489513== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489513== Open file descriptor 12: +==1489513== at 0x815707D: pipe (pipe.c:29) +==1489513== by 0x1014507D: ??? +==1489513== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489513== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489513== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489513== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489513== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489513== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489513== by 0x19C0B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489513== by 0x1968F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489513== by 0x1998A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489513== by 0x19979F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489513== by 0x199DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489513== by 0x1950F5: main (TestSimpleLinearEllipticSolver.cpp:18) +==1489513== +==1489513== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489513== at 0x815BA1C: __open_nocancel (open64_nocancel.c:39) +==1489513== by 0x80DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489513== by 0x79A3822: ??? +==1489513== by 0x79A396F: ??? +==1489513== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489513== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489513== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489513== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489513== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489513== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489513== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489513== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489513== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489513== by 0x19C0B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489513== by 0x1968F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489513== by 0x1998A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489513== by 0x19979F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489513== by 0x199DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489513== by 0x1950F5: main (TestSimpleLinearEllipticSolver.cpp:18) +==1489513== +==1489513== Open file descriptor 115: +==1489513== +==1489513== +==1489513== Open file descriptor 112: +==1489513== +==1489513== +==1489513== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleLinearEllipticSolver_valgrind.txt +==1489513== +==1489513== +==1489513== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489513== +==1489513== +==1489513== +==1489513== HEAP SUMMARY: +==1489513== in use at exit: 995,489 bytes in 13,913 blocks +==1489513== total heap usage: 222,700 allocs, 208,787 frees, 1,589,236,368 bytes allocated +==1489513== +==1489513== LEAK SUMMARY: +==1489513== definitely lost: 0 bytes in 0 blocks +==1489513== indirectly lost: 0 bytes in 0 blocks +==1489513== possibly lost: 0 bytes in 0 blocks +==1489513== still reachable: 24 bytes in 2 blocks +==1489513== suppressed: 995,465 bytes in 13,911 blocks +==1489513== Reachable blocks (those to which a pointer was found) are not shown. +==1489513== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489513== +==1489513== For lists of detected and suppressed errors, rerun with: -s +==1489513== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestSimpleLinearParabolicSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSimpleLinearParabolicSolver_valgrind.txt new file mode 100644 index 0000000000..a34c914946 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSimpleLinearParabolicSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489493== Memcheck, a memory error detector +==1489493== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489493== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489493== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleLinearParabolicSolver -malloc_debug -malloc_dump -memory_info +==1489493== Parent PID: 1488630 +==1489493== +==1489493== +==1489493== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489493== Open file descriptor 12: +==1489493== at 0x81CA07D: pipe (pipe.c:29) +==1489493== by 0x1014507D: ??? +==1489493== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489493== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489493== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489493== by 0x678CD38: PetscInitialize (pinit.c:924) +==1489493== by 0x6664153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489493== by 0x66641A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489493== by 0x1553A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489493== by 0x14FA6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489493== by 0x152E08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489493== by 0x152CA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489493== by 0x15333F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489493== by 0x14DE95: main (TestSimpleLinearParabolicSolver.cpp:19) +==1489493== +==1489493== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489493== at 0x81CEA1C: __open_nocancel (open64_nocancel.c:39) +==1489493== by 0x8152BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489493== by 0x7A16822: ??? +==1489493== by 0x7A1696F: ??? +==1489493== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489493== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489493== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489493== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489493== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489493== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489493== by 0x678CD38: PetscInitialize (pinit.c:924) +==1489493== by 0x6664153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489493== by 0x66641A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489493== by 0x1553A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489493== by 0x14FA6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489493== by 0x152E08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489493== by 0x152CA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489493== by 0x15333F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489493== by 0x14DE95: main (TestSimpleLinearParabolicSolver.cpp:19) +==1489493== +==1489493== Open file descriptor 115: +==1489493== +==1489493== +==1489493== Open file descriptor 112: +==1489493== +==1489493== +==1489493== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleLinearParabolicSolver_valgrind.txt +==1489493== +==1489493== +==1489493== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489493== +==1489493== +==1489493== +==1489493== HEAP SUMMARY: +==1489493== in use at exit: 995,969 bytes in 13,923 blocks +==1489493== total heap usage: 383,663 allocs, 369,740 frees, 1,662,619,536 bytes allocated +==1489493== +==1489493== LEAK SUMMARY: +==1489493== definitely lost: 0 bytes in 0 blocks +==1489493== indirectly lost: 0 bytes in 0 blocks +==1489493== possibly lost: 0 bytes in 0 blocks +==1489493== still reachable: 24 bytes in 2 blocks +==1489493== suppressed: 995,945 bytes in 13,921 blocks +==1489493== Reachable blocks (those to which a pointer was found) are not shown. +==1489493== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489493== +==1489493== For lists of detected and suppressed errors, rerun with: -s +==1489493== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 35) diff --git a/log-files/2024-02-21_13-45-57/TestSimpleNonlinearEllipticSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSimpleNonlinearEllipticSolver_valgrind.txt new file mode 100644 index 0000000000..a76ea2bf59 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSimpleNonlinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489527== Memcheck, a memory error detector +==1489527== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489527== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489527== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleNonlinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==1489527== Parent PID: 1488630 +==1489527== +==1489527== +==1489527== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489527== Open file descriptor 12: +==1489527== at 0x815707D: pipe (pipe.c:29) +==1489527== by 0x1014507D: ??? +==1489527== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489527== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489527== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489527== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489527== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489527== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489527== by 0x14D424: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489527== by 0x14766F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489527== by 0x14A908: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489527== by 0x14A7A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489527== by 0x14AE3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489527== by 0x1458D5: main (TestSimpleNonlinearEllipticSolver.cpp:19) +==1489527== +==1489527== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489527== at 0x815BA1C: __open_nocancel (open64_nocancel.c:39) +==1489527== by 0x80DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489527== by 0x79A3822: ??? +==1489527== by 0x79A396F: ??? +==1489527== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489527== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489527== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489527== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489527== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489527== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489527== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489527== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489527== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489527== by 0x14D424: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489527== by 0x14766F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489527== by 0x14A908: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489527== by 0x14A7A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489527== by 0x14AE3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489527== by 0x1458D5: main (TestSimpleNonlinearEllipticSolver.cpp:19) +==1489527== +==1489527== Open file descriptor 115: +==1489527== +==1489527== +==1489527== Open file descriptor 112: +==1489527== +==1489527== +==1489527== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleNonlinearEllipticSolver_valgrind.txt +==1489527== +==1489527== +==1489527== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489527== +==1489527== +==1489527== +==1489527== HEAP SUMMARY: +==1489527== in use at exit: 995,430 bytes in 13,909 blocks +==1489527== total heap usage: 402,860 allocs, 388,951 frees, 1,580,225,533 bytes allocated +==1489527== +==1489527== LEAK SUMMARY: +==1489527== definitely lost: 0 bytes in 0 blocks +==1489527== indirectly lost: 0 bytes in 0 blocks +==1489527== possibly lost: 0 bytes in 0 blocks +==1489527== still reachable: 24 bytes in 2 blocks +==1489527== suppressed: 995,406 bytes in 13,907 blocks +==1489527== Reachable blocks (those to which a pointer was found) are not shown. +==1489527== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489527== +==1489527== For lists of detected and suppressed errors, rerun with: -s +==1489527== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestSimpleTargetAreaModifier_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSimpleTargetAreaModifier_valgrind.txt new file mode 100644 index 0000000000..e8a730d7ae --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSimpleTargetAreaModifier_valgrind.txt @@ -0,0 +1,73 @@ +==1496460== Memcheck, a memory error detector +==1496460== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1496460== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1496460== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimpleTargetAreaModifier -malloc_debug -malloc_dump -memory_info +==1496460== Parent PID: 1488630 +==1496460== +==1496460== +==1496460== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1496460== Open file descriptor 12: +==1496460== at 0x1006307D: pipe (pipe.c:29) +==1496460== by 0x18A1D07D: ??? +==1496460== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1496460== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1496460== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1496460== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1496460== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1496460== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1496460== by 0x139D63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1496460== by 0x1324DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1496460== by 0x1357DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1496460== by 0x13567C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1496460== by 0x135D13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1496460== by 0x130905: main (TestSimpleTargetAreaModifier.cpp:19) +==1496460== +==1496460== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1496460== at 0x10067A1C: __open_nocancel (open64_nocancel.c:39) +==1496460== by 0xFFEBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1496460== by 0xE49F822: ??? +==1496460== by 0xE49F96F: ??? +==1496460== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1496460== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1496460== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1496460== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1496460== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1496460== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1496460== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1496460== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1496460== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1496460== by 0x139D63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1496460== by 0x1324DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1496460== by 0x1357DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1496460== by 0x13567C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1496460== by 0x135D13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1496460== by 0x130905: main (TestSimpleTargetAreaModifier.cpp:19) +==1496460== +==1496460== Open file descriptor 115: +==1496460== +==1496460== +==1496460== Open file descriptor 112: +==1496460== +==1496460== +==1496460== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleTargetAreaModifier_valgrind.txt +==1496460== +==1496460== +==1496460== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1496460== +==1496460== +==1496460== +==1496460== HEAP SUMMARY: +==1496460== in use at exit: 995,585 bytes in 13,914 blocks +==1496460== total heap usage: 600,016 allocs, 586,102 frees, 1,670,792,202 bytes allocated +==1496460== +==1496460== LEAK SUMMARY: +==1496460== definitely lost: 0 bytes in 0 blocks +==1496460== indirectly lost: 0 bytes in 0 blocks +==1496460== possibly lost: 0 bytes in 0 blocks +==1496460== still reachable: 56 bytes in 3 blocks +==1496460== suppressed: 995,529 bytes in 13,911 blocks +==1496460== Reachable blocks (those to which a pointer was found) are not shown. +==1496460== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1496460== +==1496460== For lists of detected and suppressed errors, rerun with: -s +==1496460== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestSimulationTime_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSimulationTime_valgrind.txt new file mode 100644 index 0000000000..f0ee2c28f5 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSimulationTime_valgrind.txt @@ -0,0 +1,73 @@ +==1490032== Memcheck, a memory error detector +==1490032== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490032== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490032== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationTime -malloc_debug -malloc_dump -memory_info +==1490032== Parent PID: 1488630 +==1490032== +==1490032== +==1490032== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490032== Open file descriptor 12: +==1490032== at 0xCF9E07D: pipe (pipe.c:29) +==1490032== by 0x18A1E07D: ??? +==1490032== by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490032== by 0x104C6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490032== by 0x1045FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490032== by 0xF154D38: PetscInitialize (pinit.c:924) +==1490032== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490032== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490032== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490032== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490032== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490032== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490032== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490032== by 0x154225: main (TestSimulationTime.cpp:19) +==1490032== +==1490032== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490032== at 0xCFA2A1C: __open_nocancel (open64_nocancel.c:39) +==1490032== by 0xCF26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490032== by 0xCBD4822: ??? +==1490032== by 0xCBD496F: ??? +==1490032== by 0x1408F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490032== by 0x1408F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490032== by 0x14045922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490032== by 0x13FEA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490032== by 0x104C6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490032== by 0x1045FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490032== by 0xF154D38: PetscInitialize (pinit.c:924) +==1490032== by 0xCBA0153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490032== by 0xCBA01A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490032== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490032== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490032== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490032== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490032== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490032== by 0x154225: main (TestSimulationTime.cpp:19) +==1490032== +==1490032== Open file descriptor 115: +==1490032== +==1490032== +==1490032== Open file descriptor 112: +==1490032== +==1490032== +==1490032== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationTime_valgrind.txt +==1490032== +==1490032== +==1490032== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490032== +==1490032== +==1490032== +==1490032== HEAP SUMMARY: +==1490032== in use at exit: 995,553 bytes in 13,913 blocks +==1490032== total heap usage: 65,319 allocs, 51,406 frees, 1,571,951,012 bytes allocated +==1490032== +==1490032== LEAK SUMMARY: +==1490032== definitely lost: 0 bytes in 0 blocks +==1490032== indirectly lost: 0 bytes in 0 blocks +==1490032== possibly lost: 0 bytes in 0 blocks +==1490032== still reachable: 24 bytes in 2 blocks +==1490032== suppressed: 995,529 bytes in 13,911 blocks +==1490032== Reachable blocks (those to which a pointer was found) are not shown. +==1490032== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490032== +==1490032== For lists of detected and suppressed errors, rerun with: -s +==1490032== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 0000000000..d413492b71 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==1489950== Memcheck, a memory error detector +==1489950== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489950== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489950== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithEllipticBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==1489950== Parent PID: 1488630 +==1489950== +==1489950== +==1489950== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489950== Open file descriptor 12: +==1489950== at 0x103BE07D: pipe (pipe.c:29) +==1489950== by 0x18A1D07D: ??? +==1489950== by 0x13F8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489950== by 0xFCC6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489950== by 0xFC5FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489950== by 0xE930D38: PetscInitialize (pinit.c:924) +==1489950== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489950== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489950== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489950== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489950== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489950== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489950== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489950== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) +==1489950== +==1489950== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489950== at 0x103C2A1C: __open_nocancel (open64_nocancel.c:39) +==1489950== by 0x10346BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489950== by 0xFBBA822: ??? +==1489950== by 0xFBBA96F: ??? +==1489950== by 0x140306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489950== by 0x14030938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489950== by 0x13FE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489950== by 0x13F8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489950== by 0xFCC6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489950== by 0xFC5FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489950== by 0xE930D38: PetscInitialize (pinit.c:924) +==1489950== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489950== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489950== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489950== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489950== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489950== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489950== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489950== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) +==1489950== +==1489950== Open file descriptor 115: +==1489950== +==1489950== +==1489950== Open file descriptor 112: +==1489950== +==1489950== +==1489950== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt +==1489950== +==1489950== +==1489950== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489950== +==1489950== +==1489950== +==1489950== HEAP SUMMARY: +==1489950== in use at exit: 995,526 bytes in 13,910 blocks +==1489950== total heap usage: 7,743,293 allocs, 7,729,383 frees, 2,415,532,002 bytes allocated +==1489950== +==1489950== LEAK SUMMARY: +==1489950== definitely lost: 0 bytes in 0 blocks +==1489950== indirectly lost: 0 bytes in 0 blocks +==1489950== possibly lost: 0 bytes in 0 blocks +==1489950== still reachable: 56 bytes in 3 blocks +==1489950== suppressed: 995,470 bytes in 13,907 blocks +==1489950== Reachable blocks (those to which a pointer was found) are not shown. +==1489950== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489950== +==1489950== For lists of detected and suppressed errors, rerun with: -s +==1489950== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 0000000000..a279b95ff7 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==1489959== Memcheck, a memory error detector +==1489959== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489959== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489959== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithEllipticGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==1489959== Parent PID: 1488630 +==1489959== +==1489959== +==1489959== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489959== Open file descriptor 12: +==1489959== at 0x103BE07D: pipe (pipe.c:29) +==1489959== by 0x18A1D07D: ??? +==1489959== by 0x13F8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489959== by 0xFCC6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489959== by 0xFC5FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489959== by 0xE930D38: PetscInitialize (pinit.c:924) +==1489959== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489959== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489959== by 0x12F3BB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489959== by 0x12A2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489959== by 0x12CDFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489959== by 0x12CC9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489959== by 0x12D333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489959== by 0x1286D5: main (TestSimulationsWithEllipticGrowingDomainPdeModifier.cpp:19) +==1489959== +==1489959== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489959== at 0x103C2A1C: __open_nocancel (open64_nocancel.c:39) +==1489959== by 0x10346BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489959== by 0xFBBA822: ??? +==1489959== by 0xFBBA96F: ??? +==1489959== by 0x140306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489959== by 0x14030938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489959== by 0x13FE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489959== by 0x13F8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489959== by 0xFCC6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489959== by 0xFC5FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489959== by 0xE930D38: PetscInitialize (pinit.c:924) +==1489959== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489959== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489959== by 0x12F3BB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489959== by 0x12A2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489959== by 0x12CDFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489959== by 0x12CC9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489959== by 0x12D333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489959== by 0x1286D5: main (TestSimulationsWithEllipticGrowingDomainPdeModifier.cpp:19) +==1489959== +==1489959== Open file descriptor 115: +==1489959== +==1489959== +==1489959== Open file descriptor 112: +==1489959== +==1489959== +==1489959== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt +==1489959== +==1489959== +==1489959== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489959== +==1489959== +==1489959== +==1489959== HEAP SUMMARY: +==1489959== in use at exit: 995,526 bytes in 13,910 blocks +==1489959== total heap usage: 5,218,008 allocs, 5,204,098 frees, 2,553,960,253 bytes allocated +==1489959== +==1489959== LEAK SUMMARY: +==1489959== definitely lost: 0 bytes in 0 blocks +==1489959== indirectly lost: 0 bytes in 0 blocks +==1489959== possibly lost: 0 bytes in 0 blocks +==1489959== still reachable: 56 bytes in 3 blocks +==1489959== suppressed: 995,470 bytes in 13,907 blocks +==1489959== Reachable blocks (those to which a pointer was found) are not shown. +==1489959== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489959== +==1489959== For lists of detected and suppressed errors, rerun with: -s +==1489959== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 0000000000..0264bebf84 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==1489963== Memcheck, a memory error detector +==1489963== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489963== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489963== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithParabolicBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==1489963== Parent PID: 1488630 +==1489963== +==1489963== +==1489963== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489963== Open file descriptor 12: +==1489963== at 0x103BE07D: pipe (pipe.c:29) +==1489963== by 0x18A1D07D: ??? +==1489963== by 0x13F8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489963== by 0xFCC6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489963== by 0xFC5FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489963== by 0xE930D38: PetscInitialize (pinit.c:924) +==1489963== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489963== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489963== by 0x129501: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489963== by 0x1249F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489963== by 0x126F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489963== by 0x126E65: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489963== by 0x127479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489963== by 0x1231F5: main (TestSimulationsWithParabolicBoxDomainPdeModifier.cpp:18) +==1489963== +==1489963== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489963== at 0x103C2A1C: __open_nocancel (open64_nocancel.c:39) +==1489963== by 0x10346BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489963== by 0xFBBA822: ??? +==1489963== by 0xFBBA96F: ??? +==1489963== by 0x140306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489963== by 0x14030938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489963== by 0x13FE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489963== by 0x13F8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489963== by 0xFCC6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489963== by 0xFC5FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489963== by 0xE930D38: PetscInitialize (pinit.c:924) +==1489963== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489963== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489963== by 0x129501: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489963== by 0x1249F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489963== by 0x126F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489963== by 0x126E65: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489963== by 0x127479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489963== by 0x1231F5: main (TestSimulationsWithParabolicBoxDomainPdeModifier.cpp:18) +==1489963== +==1489963== Open file descriptor 115: +==1489963== +==1489963== +==1489963== Open file descriptor 112: +==1489963== +==1489963== +==1489963== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt +==1489963== +==1489963== +==1489963== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489963== +==1489963== +==1489963== +==1489963== HEAP SUMMARY: +==1489963== in use at exit: 995,526 bytes in 13,910 blocks +==1489963== total heap usage: 4,521,311 allocs, 4,507,401 frees, 2,060,147,803 bytes allocated +==1489963== +==1489963== LEAK SUMMARY: +==1489963== definitely lost: 0 bytes in 0 blocks +==1489963== indirectly lost: 0 bytes in 0 blocks +==1489963== possibly lost: 0 bytes in 0 blocks +==1489963== still reachable: 56 bytes in 3 blocks +==1489963== suppressed: 995,470 bytes in 13,907 blocks +==1489963== Reachable blocks (those to which a pointer was found) are not shown. +==1489963== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489963== +==1489963== For lists of detected and suppressed errors, rerun with: -s +==1489963== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 0000000000..b9654a27b4 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==1489992== Memcheck, a memory error detector +==1489992== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489992== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489992== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithParabolicGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==1489992== Parent PID: 1488630 +==1489992== +==1489992== +==1489992== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489992== Open file descriptor 12: +==1489992== at 0x103BE07D: pipe (pipe.c:29) +==1489992== by 0x18A1D07D: ??? +==1489992== by 0x13F8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489992== by 0xFCC6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489992== by 0xFC5FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489992== by 0xE930D38: PetscInitialize (pinit.c:924) +==1489992== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489992== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489992== by 0x128F89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489992== by 0x123EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489992== by 0x1269CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489992== by 0x12686A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489992== by 0x126F01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489992== by 0x1222D5: main (TestSimulationsWithParabolicGrowingDomainPdeModifier.cpp:19) +==1489992== +==1489992== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489992== at 0x103C2A1C: __open_nocancel (open64_nocancel.c:39) +==1489992== by 0x10346BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489992== by 0xFBBA822: ??? +==1489992== by 0xFBBA96F: ??? +==1489992== by 0x140306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489992== by 0x14030938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489992== by 0x13FE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489992== by 0x13F8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489992== by 0xFCC6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489992== by 0xFC5FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489992== by 0xE930D38: PetscInitialize (pinit.c:924) +==1489992== by 0xE808153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489992== by 0xE8081A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489992== by 0x128F89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489992== by 0x123EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489992== by 0x1269CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489992== by 0x12686A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489992== by 0x126F01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489992== by 0x1222D5: main (TestSimulationsWithParabolicGrowingDomainPdeModifier.cpp:19) +==1489992== +==1489992== Open file descriptor 115: +==1489992== +==1489992== +==1489992== Open file descriptor 112: +==1489992== +==1489992== +==1489992== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt +==1489992== +==1489992== +==1489992== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489992== +==1489992== +==1489992== +==1489992== HEAP SUMMARY: +==1489992== in use at exit: 995,526 bytes in 13,910 blocks +==1489992== total heap usage: 5,593,839 allocs, 5,579,929 frees, 2,119,997,395 bytes allocated +==1489992== +==1489992== LEAK SUMMARY: +==1489992== definitely lost: 0 bytes in 0 blocks +==1489992== indirectly lost: 0 bytes in 0 blocks +==1489992== possibly lost: 0 bytes in 0 blocks +==1489992== still reachable: 56 bytes in 3 blocks +==1489992== suppressed: 995,470 bytes in 13,907 blocks +==1489992== Reachable blocks (those to which a pointer was found) are not shown. +==1489992== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489992== +==1489992== For lists of detected and suppressed errors, rerun with: -s +==1489992== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestSingleOdeWntCellCycleModel_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSingleOdeWntCellCycleModel_valgrind.txt new file mode 100644 index 0000000000..9c97d2d3de --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSingleOdeWntCellCycleModel_valgrind.txt @@ -0,0 +1,73 @@ +==1504228== Memcheck, a memory error detector +==1504228== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504228== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504228== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSingleOdeWntCellCycleModel -malloc_debug -malloc_dump -memory_info +==1504228== Parent PID: 1488630 +==1504228== +==1504228== +==1504228== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504228== Open file descriptor 12: +==1504228== at 0x1005A07D: pipe (pipe.c:29) +==1504228== by 0x1A6DF07D: ??? +==1504228== by 0x148324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504228== by 0xF962418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504228== by 0xF8FBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504228== by 0xE5F2D38: PetscInitialize (pinit.c:924) +==1504228== by 0xE462153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504228== by 0xE4621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504228== by 0x18BB23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504228== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504228== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504228== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504228== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504228== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) +==1504228== +==1504228== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504228== at 0x1005EA1C: __open_nocancel (open64_nocancel.c:39) +==1504228== by 0xFFE2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504228== by 0xE496822: ??? +==1504228== by 0xE49696F: ??? +==1504228== by 0x148D76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504228== by 0x148D7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504228== by 0x1488D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504228== by 0x148322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504228== by 0xF962418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504228== by 0xF8FBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504228== by 0xE5F2D38: PetscInitialize (pinit.c:924) +==1504228== by 0xE462153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504228== by 0xE4621A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504228== by 0x18BB23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504228== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504228== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504228== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504228== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504228== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) +==1504228== +==1504228== Open file descriptor 115: +==1504228== +==1504228== +==1504228== Open file descriptor 112: +==1504228== +==1504228== +==1504228== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSingleOdeWntCellCycleModel_valgrind.txt +==1504228== +==1504228== +==1504228== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504228== +==1504228== +==1504228== +==1504228== HEAP SUMMARY: +==1504228== in use at exit: 995,745 bytes in 13,916 blocks +==1504228== total heap usage: 275,209 allocs, 261,293 frees, 1,590,325,704 bytes allocated +==1504228== +==1504228== LEAK SUMMARY: +==1504228== definitely lost: 0 bytes in 0 blocks +==1504228== indirectly lost: 0 bytes in 0 blocks +==1504228== possibly lost: 0 bytes in 0 blocks +==1504228== still reachable: 200 bytes in 5 blocks +==1504228== suppressed: 995,545 bytes in 13,911 blocks +==1504228== Reachable blocks (those to which a pointer was found) are not shown. +==1504228== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504228== +==1504228== For lists of detected and suppressed errors, rerun with: -s +==1504228== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestSloughingCellKillers_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSloughingCellKillers_valgrind.txt new file mode 100644 index 0000000000..5b825422cc --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSloughingCellKillers_valgrind.txt @@ -0,0 +1,73 @@ +==1504363== Memcheck, a memory error detector +==1504363== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504363== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504363== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSloughingCellKillers -malloc_debug -malloc_dump -memory_info +==1504363== Parent PID: 1488630 +==1504363== +==1504363== +==1504363== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504363== Open file descriptor 12: +==1504363== at 0x11A0A07D: pipe (pipe.c:29) +==1504363== by 0x1A6DF07D: ??? +==1504363== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504363== by 0x1122B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504363== by 0x111C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504363== by 0xFEBBD38: PetscInitialize (pinit.c:924) +==1504363== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504363== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504363== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504363== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504363== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504363== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504363== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504363== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) +==1504363== +==1504363== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504363== at 0x11A0EA1C: __open_nocancel (open64_nocancel.c:39) +==1504363== by 0x11992BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504363== by 0xFD5F822: ??? +==1504363== by 0xFD5F96F: ??? +==1504363== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504363== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504363== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504363== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504363== by 0x1122B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504363== by 0x111C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504363== by 0xFEBBD38: PetscInitialize (pinit.c:924) +==1504363== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504363== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504363== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504363== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504363== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504363== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504363== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504363== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) +==1504363== +==1504363== Open file descriptor 115: +==1504363== +==1504363== +==1504363== Open file descriptor 112: +==1504363== +==1504363== +==1504363== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSloughingCellKillers_valgrind.txt +==1504363== +==1504363== +==1504363== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504363== +==1504363== +==1504363== +==1504363== HEAP SUMMARY: +==1504363== in use at exit: 995,601 bytes in 13,914 blocks +==1504363== total heap usage: 112,780 allocs, 98,866 frees, 1,575,500,903 bytes allocated +==1504363== +==1504363== LEAK SUMMARY: +==1504363== definitely lost: 0 bytes in 0 blocks +==1504363== indirectly lost: 0 bytes in 0 blocks +==1504363== possibly lost: 0 bytes in 0 blocks +==1504363== still reachable: 56 bytes in 3 blocks +==1504363== suppressed: 995,545 bytes in 13,911 blocks +==1504363== Reachable blocks (those to which a pointer was found) are not shown. +==1504363== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504363== +==1504363== For lists of detected and suppressed errors, rerun with: -s +==1504363== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestSolveLaplacianWithQuadratics_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSolveLaplacianWithQuadratics_valgrind.txt new file mode 100644 index 0000000000..ad37c8b544 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSolveLaplacianWithQuadratics_valgrind.txt @@ -0,0 +1,73 @@ +==1489542== Memcheck, a memory error detector +==1489542== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489542== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489542== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolveLaplacianWithQuadratics -malloc_debug -malloc_dump -memory_info +==1489542== Parent PID: 1488630 +==1489542== +==1489542== +==1489542== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489542== Open file descriptor 12: +==1489542== at 0x815707D: pipe (pipe.c:29) +==1489542== by 0x1014507D: ??? +==1489542== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489542== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489542== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489542== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489542== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489542== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489542== by 0x15D32E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489542== by 0x1582D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489542== by 0x15AFE6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489542== by 0x15AEE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489542== by 0x15B4F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489542== by 0x156AD5: main (TestSolveLaplacianWithQuadratics.cpp:18) +==1489542== +==1489542== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489542== at 0x815BA1C: __open_nocancel (open64_nocancel.c:39) +==1489542== by 0x80DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489542== by 0x79A3822: ??? +==1489542== by 0x79A396F: ??? +==1489542== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489542== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489542== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489542== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489542== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489542== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489542== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489542== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489542== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489542== by 0x15D32E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489542== by 0x1582D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489542== by 0x15AFE6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489542== by 0x15AEE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489542== by 0x15B4F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489542== by 0x156AD5: main (TestSolveLaplacianWithQuadratics.cpp:18) +==1489542== +==1489542== Open file descriptor 115: +==1489542== +==1489542== +==1489542== Open file descriptor 112: +==1489542== +==1489542== +==1489542== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolveLaplacianWithQuadratics_valgrind.txt +==1489542== +==1489542== +==1489542== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489542== +==1489542== +==1489542== +==1489542== HEAP SUMMARY: +==1489542== in use at exit: 995,489 bytes in 13,913 blocks +==1489542== total heap usage: 330,232 allocs, 316,319 frees, 1,590,951,777 bytes allocated +==1489542== +==1489542== LEAK SUMMARY: +==1489542== definitely lost: 0 bytes in 0 blocks +==1489542== indirectly lost: 0 bytes in 0 blocks +==1489542== possibly lost: 0 bytes in 0 blocks +==1489542== still reachable: 24 bytes in 2 blocks +==1489542== suppressed: 995,465 bytes in 13,911 blocks +==1489542== Reachable blocks (those to which a pointer was found) are not shown. +==1489542== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489542== +==1489542== For lists of detected and suppressed errors, rerun with: -s +==1489542== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestSolvingCoupledPdes_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSolvingCoupledPdes_valgrind.txt new file mode 100644 index 0000000000..2da9ce0f5e --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSolvingCoupledPdes_valgrind.txt @@ -0,0 +1,73 @@ +==1489534== Memcheck, a memory error detector +==1489534== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489534== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489534== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolvingCoupledPdes -malloc_debug -malloc_dump -memory_info +==1489534== Parent PID: 1488630 +==1489534== +==1489534== +==1489534== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489534== Open file descriptor 12: +==1489534== at 0x815707D: pipe (pipe.c:29) +==1489534== by 0x1014507D: ??? +==1489534== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489534== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489534== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489534== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489534== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489534== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489534== by 0x143C06: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489534== by 0x13ECB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489534== by 0x1418BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489534== by 0x1417B9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489534== by 0x141DCD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489534== by 0x13D4B5: main (TestSolvingCoupledPdes.cpp:18) +==1489534== +==1489534== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489534== at 0x815BA1C: __open_nocancel (open64_nocancel.c:39) +==1489534== by 0x80DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489534== by 0x79A3822: ??? +==1489534== by 0x79A396F: ??? +==1489534== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489534== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489534== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489534== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489534== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489534== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489534== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489534== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489534== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489534== by 0x143C06: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489534== by 0x13ECB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489534== by 0x1418BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489534== by 0x1417B9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489534== by 0x141DCD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489534== by 0x13D4B5: main (TestSolvingCoupledPdes.cpp:18) +==1489534== +==1489534== Open file descriptor 115: +==1489534== +==1489534== +==1489534== Open file descriptor 112: +==1489534== +==1489534== +==1489534== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingCoupledPdes_valgrind.txt +==1489534== +==1489534== +==1489534== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489534== +==1489534== +==1489534== +==1489534== HEAP SUMMARY: +==1489534== in use at exit: 995,489 bytes in 13,913 blocks +==1489534== total heap usage: 375,166 allocs, 361,253 frees, 1,586,803,320 bytes allocated +==1489534== +==1489534== LEAK SUMMARY: +==1489534== definitely lost: 0 bytes in 0 blocks +==1489534== indirectly lost: 0 bytes in 0 blocks +==1489534== possibly lost: 0 bytes in 0 blocks +==1489534== still reachable: 24 bytes in 2 blocks +==1489534== suppressed: 995,465 bytes in 13,911 blocks +==1489534== Reachable blocks (those to which a pointer was found) are not shown. +==1489534== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489534== +==1489534== For lists of detected and suppressed errors, rerun with: -s +==1489534== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestSolvingNonlinearPdesTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSolvingNonlinearPdesTutorial_valgrind.txt new file mode 100644 index 0000000000..d622c37b5e --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSolvingNonlinearPdesTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1489562== Memcheck, a memory error detector +==1489562== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489562== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489562== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolvingNonlinearPdesTutorial -malloc_debug -malloc_dump -memory_info +==1489562== Parent PID: 1488630 +==1489562== +==1489562== +==1489562== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489562== Open file descriptor 12: +==1489562== at 0x815707D: pipe (pipe.c:29) +==1489562== by 0x1014507D: ??? +==1489562== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489562== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489562== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489562== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489562== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489562== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489562== by 0x1389EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489562== by 0x133AFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489562== by 0x1366A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489562== by 0x1365A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489562== by 0x136BB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489562== by 0x1322D5: main (TestSolvingNonlinearPdesTutorial.cpp:18) +==1489562== +==1489562== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489562== at 0x815BA1C: __open_nocancel (open64_nocancel.c:39) +==1489562== by 0x80DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489562== by 0x79A3822: ??? +==1489562== by 0x79A396F: ??? +==1489562== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489562== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489562== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489562== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489562== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489562== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489562== by 0x6719D38: PetscInitialize (pinit.c:924) +==1489562== by 0x65F1153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489562== by 0x65F11A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489562== by 0x1389EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489562== by 0x133AFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489562== by 0x1366A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489562== by 0x1365A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489562== by 0x136BB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489562== by 0x1322D5: main (TestSolvingNonlinearPdesTutorial.cpp:18) +==1489562== +==1489562== Open file descriptor 115: +==1489562== +==1489562== +==1489562== Open file descriptor 112: +==1489562== +==1489562== +==1489562== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingNonlinearPdesTutorial_valgrind.txt +==1489562== +==1489562== +==1489562== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489562== +==1489562== +==1489562== +==1489562== HEAP SUMMARY: +==1489562== in use at exit: 995,489 bytes in 13,913 blocks +==1489562== total heap usage: 256,093 allocs, 242,180 frees, 1,574,347,981 bytes allocated +==1489562== +==1489562== LEAK SUMMARY: +==1489562== definitely lost: 0 bytes in 0 blocks +==1489562== indirectly lost: 0 bytes in 0 blocks +==1489562== possibly lost: 0 bytes in 0 blocks +==1489562== still reachable: 24 bytes in 2 blocks +==1489562== suppressed: 995,465 bytes in 13,911 blocks +==1489562== Reachable blocks (those to which a pointer was found) are not shown. +==1489562== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489562== +==1489562== For lists of detected and suppressed errors, rerun with: -s +==1489562== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestSolvingOdesTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSolvingOdesTutorial_valgrind.txt new file mode 100644 index 0000000000..2293b44eda --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSolvingOdesTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1489446== Memcheck, a memory error detector +==1489446== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489446== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489446== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestSolvingOdesTutorial -malloc_debug -malloc_dump -memory_info +==1489446== Parent PID: 1488630 +==1489446== +==1489446== +==1489446== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489446== Open file descriptor 12: +==1489446== at 0x63C807D: pipe (pipe.c:29) +==1489446== by 0xB1E607D: ??? +==1489446== by 0x8CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489446== by 0x5FFD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489446== by 0x5F96D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489446== by 0x4C65D38: PetscInitialize (pinit.c:924) +==1489446== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489446== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489446== by 0x118D39: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489446== by 0x114693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489446== by 0x1169AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489446== by 0x1168A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489446== by 0x116EBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489446== by 0x1128D5: main (TestSolvingOdesTutorial.cpp:18) +==1489446== +==1489446== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489446== at 0x63CCA1C: __open_nocancel (open64_nocancel.c:39) +==1489446== by 0x6350BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489446== by 0x5EEF822: ??? +==1489446== by 0x5EEF96F: ??? +==1489446== by 0x8D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489446== by 0x8D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489446== by 0x8D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489446== by 0x8CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489446== by 0x5FFD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489446== by 0x5F96D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489446== by 0x4C65D38: PetscInitialize (pinit.c:924) +==1489446== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489446== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489446== by 0x118D39: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489446== by 0x114693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489446== by 0x1169AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489446== by 0x1168A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489446== by 0x116EBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489446== by 0x1128D5: main (TestSolvingOdesTutorial.cpp:18) +==1489446== +==1489446== Open file descriptor 115: +==1489446== +==1489446== +==1489446== Open file descriptor 112: +==1489446== +==1489446== +==1489446== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingOdesTutorial_valgrind.txt +==1489446== +==1489446== +==1489446== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489446== +==1489446== +==1489446== +==1489446== HEAP SUMMARY: +==1489446== in use at exit: 995,137 bytes in 13,913 blocks +==1489446== total heap usage: 57,851 allocs, 43,938 frees, 1,571,317,029 bytes allocated +==1489446== +==1489446== LEAK SUMMARY: +==1489446== definitely lost: 0 bytes in 0 blocks +==1489446== indirectly lost: 0 bytes in 0 blocks +==1489446== possibly lost: 0 bytes in 0 blocks +==1489446== still reachable: 24 bytes in 2 blocks +==1489446== suppressed: 995,113 bytes in 13,911 blocks +==1489446== Reachable blocks (those to which a pointer was found) are not shown. +==1489446== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489446== +==1489446== For lists of detected and suppressed errors, rerun with: -s +==1489446== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestSolvingStiffOdeSystems_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSolvingStiffOdeSystems_valgrind.txt new file mode 100644 index 0000000000..5d94258cfd --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSolvingStiffOdeSystems_valgrind.txt @@ -0,0 +1,73 @@ +==1489444== Memcheck, a memory error detector +==1489444== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489444== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489444== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestSolvingStiffOdeSystems -malloc_debug -malloc_dump -memory_info +==1489444== Parent PID: 1488630 +==1489444== +==1489444== +==1489444== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489444== Open file descriptor 12: +==1489444== at 0x4F1307D: pipe (pipe.c:29) +==1489444== by 0xB1E807D: ??? +==1489444== by 0x8CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489444== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489444== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489444== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489444== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489444== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489444== by 0x118D00: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489444== by 0x114431: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489444== by 0x1167AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489444== by 0x1166A9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489444== by 0x116CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489444== by 0x112835: main (TestSolvingStiffOdeSystems.cpp:18) +==1489444== +==1489444== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489444== at 0x4F17A1C: __open_nocancel (open64_nocancel.c:39) +==1489444== by 0x4E9BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489444== by 0x4B71822: ??? +==1489444== by 0x4B7196F: ??? +==1489444== by 0x8D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489444== by 0x8D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489444== by 0x8D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489444== by 0x8CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489444== by 0x667B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489444== by 0x6614D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489444== by 0x530BD38: PetscInitialize (pinit.c:924) +==1489444== by 0x4B3D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489444== by 0x4B3D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489444== by 0x118D00: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489444== by 0x114431: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489444== by 0x1167AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489444== by 0x1166A9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489444== by 0x116CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489444== by 0x112835: main (TestSolvingStiffOdeSystems.cpp:18) +==1489444== +==1489444== Open file descriptor 115: +==1489444== +==1489444== +==1489444== Open file descriptor 112: +==1489444== +==1489444== +==1489444== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingStiffOdeSystems_valgrind.txt +==1489444== +==1489444== +==1489444== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489444== +==1489444== +==1489444== +==1489444== HEAP SUMMARY: +==1489444== in use at exit: 995,137 bytes in 13,913 blocks +==1489444== total heap usage: 59,740 allocs, 45,827 frees, 1,571,305,656 bytes allocated +==1489444== +==1489444== LEAK SUMMARY: +==1489444== definitely lost: 0 bytes in 0 blocks +==1489444== indirectly lost: 0 bytes in 0 blocks +==1489444== possibly lost: 0 bytes in 0 blocks +==1489444== still reachable: 24 bytes in 2 blocks +==1489444== suppressed: 995,113 bytes in 13,911 blocks +==1489444== Reachable blocks (those to which a pointer was found) are not shown. +==1489444== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489444== +==1489444== For lists of detected and suppressed errors, rerun with: -s +==1489444== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-02-21_13-45-57/TestSpiralWaveAndPhase_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSpiralWaveAndPhase_valgrind.txt new file mode 100644 index 0000000000..518fec523d --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSpiralWaveAndPhase_valgrind.txt @@ -0,0 +1,73 @@ +==1506871== Memcheck, a memory error detector +==1506871== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506871== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506871== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestSpiralWaveAndPhase -malloc_debug -malloc_dump -memory_info +==1506871== Parent PID: 1488630 +==1506871== +==1506871== +==1506871== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506871== Open file descriptor 12: +==1506871== at 0x813B07D: pipe (pipe.c:29) +==1506871== by 0x1014507D: ??? +==1506871== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506871== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506871== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506871== by 0x66FDD38: PetscInitialize (pinit.c:924) +==1506871== by 0x65D5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506871== by 0x65D51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506871== by 0x119000: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506871== by 0x1147B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506871== by 0x116FAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506871== by 0x116EA7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506871== by 0x1174BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506871== by 0x112FB5: main (TestSpiralWaveAndPhase.cpp:18) +==1506871== +==1506871== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506871== at 0x813FA1C: __open_nocancel (open64_nocancel.c:39) +==1506871== by 0x80C3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506871== by 0x7987822: ??? +==1506871== by 0x798796F: ??? +==1506871== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506871== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506871== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506871== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506871== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506871== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506871== by 0x66FDD38: PetscInitialize (pinit.c:924) +==1506871== by 0x65D5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506871== by 0x65D51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506871== by 0x119000: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506871== by 0x1147B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506871== by 0x116FAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506871== by 0x116EA7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506871== by 0x1174BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506871== by 0x112FB5: main (TestSpiralWaveAndPhase.cpp:18) +==1506871== +==1506871== Open file descriptor 115: +==1506871== +==1506871== +==1506871== Open file descriptor 112: +==1506871== +==1506871== +==1506871== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSpiralWaveAndPhase_valgrind.txt +==1506871== +==1506871== +==1506871== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506871== +==1506871== +==1506871== +==1506871== HEAP SUMMARY: +==1506871== in use at exit: 995,910 bytes in 13,919 blocks +==1506871== total heap usage: 4,364,116 allocs, 4,350,197 frees, 2,139,245,604 bytes allocated +==1506871== +==1506871== LEAK SUMMARY: +==1506871== definitely lost: 0 bytes in 0 blocks +==1506871== indirectly lost: 0 bytes in 0 blocks +==1506871== possibly lost: 0 bytes in 0 blocks +==1506871== still reachable: 24 bytes in 2 blocks +==1506871== suppressed: 995,886 bytes in 13,917 blocks +==1506871== Reachable blocks (those to which a pointer was found) are not shown. +==1506871== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506871== +==1506871== For lists of detected and suppressed errors, rerun with: -s +==1506871== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 31) diff --git a/log-files/2024-02-21_13-45-57/TestSteadyStateRunner_valgrind.txt b/log-files/2024-02-21_13-45-57/TestSteadyStateRunner_valgrind.txt new file mode 100644 index 0000000000..ed157bdc3c --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestSteadyStateRunner_valgrind.txt @@ -0,0 +1,73 @@ +==1506080== Memcheck, a memory error detector +==1506080== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506080== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506080== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestSteadyStateRunner -malloc_debug -malloc_dump -memory_info +==1506080== Parent PID: 1488630 +==1506080== +==1506080== +==1506080== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506080== Open file descriptor 12: +==1506080== at 0x9C6A07D: pipe (pipe.c:29) +==1506080== by 0x13F9707D: ??? +==1506080== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506080== by 0x989D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506080== by 0x9836D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506080== by 0x8507D38: PetscInitialize (pinit.c:924) +==1506080== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506080== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506080== by 0x115FF5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1506080== by 0x1114AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506080== by 0x113CD0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506080== by 0x113B70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506080== by 0x114207: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506080== by 0x10F8D5: main (TestSteadyStateRunner.cpp:19) +==1506080== +==1506080== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506080== at 0x9C6EA1C: __open_nocancel (open64_nocancel.c:39) +==1506080== by 0x9BF2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506080== by 0x9791822: ??? +==1506080== by 0x979196F: ??? +==1506080== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506080== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506080== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506080== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506080== by 0x989D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506080== by 0x9836D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506080== by 0x8507D38: PetscInitialize (pinit.c:924) +==1506080== by 0x83DF153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506080== by 0x83DF1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506080== by 0x115FF5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1506080== by 0x1114AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506080== by 0x113CD0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506080== by 0x113B70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506080== by 0x114207: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506080== by 0x10F8D5: main (TestSteadyStateRunner.cpp:19) +==1506080== +==1506080== Open file descriptor 115: +==1506080== +==1506080== +==1506080== Open file descriptor 112: +==1506080== +==1506080== +==1506080== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSteadyStateRunner_valgrind.txt +==1506080== +==1506080== +==1506080== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506080== +==1506080== +==1506080== +==1506080== HEAP SUMMARY: +==1506080== in use at exit: 995,510 bytes in 13,909 blocks +==1506080== total heap usage: 63,125 allocs, 49,216 frees, 1,571,963,541 bytes allocated +==1506080== +==1506080== LEAK SUMMARY: +==1506080== definitely lost: 0 bytes in 0 blocks +==1506080== indirectly lost: 0 bytes in 0 blocks +==1506080== possibly lost: 0 bytes in 0 blocks +==1506080== still reachable: 24 bytes in 2 blocks +==1506080== suppressed: 995,486 bytes in 13,907 blocks +==1506080== Reachable blocks (those to which a pointer was found) are not shown. +==1506080== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506080== +==1506080== For lists of detected and suppressed errors, rerun with: -s +==1506080== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestStepSizeException_valgrind.txt b/log-files/2024-02-21_13-45-57/TestStepSizeException_valgrind.txt new file mode 100644 index 0000000000..268f970058 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestStepSizeException_valgrind.txt @@ -0,0 +1,73 @@ +==1498866== Memcheck, a memory error detector +==1498866== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1498866== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1498866== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestStepSizeException -malloc_debug -malloc_dump -memory_info +==1498866== Parent PID: 1488630 +==1498866== +==1498866== +==1498866== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1498866== Open file descriptor 12: +==1498866== at 0x4CB607D: pipe (pipe.c:29) +==1498866== by 0xAEA607D: ??? +==1498866== by 0x89C04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1498866== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1498866== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1498866== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1498866== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1498866== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1498866== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1498866== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1498866== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1498866== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1498866== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1498866== by 0x10D735: main (TestStepSizeException.cpp:19) +==1498866== +==1498866== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1498866== at 0x4CBAA1C: __open_nocancel (open64_nocancel.c:39) +==1498866== by 0x4C3EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1498866== by 0x492E822: ??? +==1498866== by 0x492E96F: ??? +==1498866== by 0x8A656DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1498866== by 0x8A65938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1498866== by 0x8A1B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1498866== by 0x89C02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1498866== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1498866== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1498866== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1498866== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1498866== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1498866== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1498866== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1498866== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1498866== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1498866== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1498866== by 0x10D735: main (TestStepSizeException.cpp:19) +==1498866== +==1498866== Open file descriptor 115: +==1498866== +==1498866== +==1498866== Open file descriptor 112: +==1498866== +==1498866== +==1498866== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStepSizeException_valgrind.txt +==1498866== +==1498866== +==1498866== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1498866== +==1498866== +==1498866== +==1498866== HEAP SUMMARY: +==1498866== in use at exit: 995,073 bytes in 13,913 blocks +==1498866== total heap usage: 57,572 allocs, 43,659 frees, 1,571,237,423 bytes allocated +==1498866== +==1498866== LEAK SUMMARY: +==1498866== definitely lost: 0 bytes in 0 blocks +==1498866== indirectly lost: 0 bytes in 0 blocks +==1498866== possibly lost: 0 bytes in 0 blocks +==1498866== still reachable: 24 bytes in 2 blocks +==1498866== suppressed: 995,049 bytes in 13,911 blocks +==1498866== Reachable blocks (those to which a pointer was found) are not shown. +==1498866== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1498866== +==1498866== For lists of detected and suppressed errors, rerun with: -s +==1498866== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestStimulusBoundaryCondition_valgrind.txt b/log-files/2024-02-21_13-45-57/TestStimulusBoundaryCondition_valgrind.txt new file mode 100644 index 0000000000..3b1d886bb8 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestStimulusBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==1506925== Memcheck, a memory error detector +==1506925== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506925== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506925== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulusBoundaryCondition -malloc_debug -malloc_dump -memory_info +==1506925== Parent PID: 1488630 +==1506925== +==1506925== +==1506925== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506925== Open file descriptor 12: +==1506925== at 0xA1D607D: pipe (pipe.c:29) +==1506925== by 0x13F9607D: ??? +==1506925== by 0xF7514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506925== by 0xB8D1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506925== by 0xB86AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506925== by 0xA561D38: PetscInitialize (pinit.c:924) +==1506925== by 0x9E02153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506925== by 0x9E021A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506925== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506925== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506925== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506925== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506925== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506925== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) +==1506925== +==1506925== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506925== at 0xA1DAA1C: __open_nocancel (open64_nocancel.c:39) +==1506925== by 0xA15EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506925== by 0x9E36822: ??? +==1506925== by 0x9E3696F: ??? +==1506925== by 0xF7F66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506925== by 0xF7F6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506925== by 0xF7AC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506925== by 0xF7512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506925== by 0xB8D1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506925== by 0xB86AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506925== by 0xA561D38: PetscInitialize (pinit.c:924) +==1506925== by 0x9E02153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506925== by 0x9E021A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506925== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506925== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506925== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506925== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506925== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506925== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) +==1506925== +==1506925== Open file descriptor 115: +==1506925== +==1506925== +==1506925== Open file descriptor 112: +==1506925== +==1506925== +==1506925== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulusBoundaryCondition_valgrind.txt +==1506925== +==1506925== +==1506925== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506925== +==1506925== +==1506925== +==1506925== HEAP SUMMARY: +==1506925== in use at exit: 995,569 bytes in 13,913 blocks +==1506925== total heap usage: 61,313 allocs, 47,400 frees, 1,571,585,710 bytes allocated +==1506925== +==1506925== LEAK SUMMARY: +==1506925== definitely lost: 0 bytes in 0 blocks +==1506925== indirectly lost: 0 bytes in 0 blocks +==1506925== possibly lost: 0 bytes in 0 blocks +==1506925== still reachable: 24 bytes in 2 blocks +==1506925== suppressed: 995,545 bytes in 13,911 blocks +==1506925== Reachable blocks (those to which a pointer was found) are not shown. +==1506925== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506925== +==1506925== For lists of detected and suppressed errors, rerun with: -s +==1506925== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2024-02-21_13-45-57/TestStimulusFactory_valgrind.txt b/log-files/2024-02-21_13-45-57/TestStimulusFactory_valgrind.txt new file mode 100644 index 0000000000..ea2b64865a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestStimulusFactory_valgrind.txt @@ -0,0 +1,73 @@ +==1505099== Memcheck, a memory error detector +==1505099== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505099== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505099== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulusFactory -malloc_debug -malloc_dump -memory_info +==1505099== Parent PID: 1488630 +==1505099== +==1505099== +==1505099== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505099== Open file descriptor 12: +==1505099== at 0xA43607D: pipe (pipe.c:29) +==1505099== by 0x13F9607D: ??? +==1505099== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505099== by 0xBB2F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505099== by 0xBAC8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505099== by 0xA7BFD38: PetscInitialize (pinit.c:924) +==1505099== by 0x9D1B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505099== by 0x9D1B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505099== by 0x122E20: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505099== by 0x11DDCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505099== by 0x120996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505099== by 0x120836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505099== by 0x120ECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505099== by 0x11C1F5: main (TestStimulusFactory.cpp:19) +==1505099== +==1505099== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505099== at 0xA43AA1C: __open_nocancel (open64_nocancel.c:39) +==1505099== by 0xA3BEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505099== by 0x9D4F822: ??? +==1505099== by 0x9D4F96F: ??? +==1505099== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505099== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505099== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505099== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505099== by 0xBB2F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505099== by 0xBAC8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505099== by 0xA7BFD38: PetscInitialize (pinit.c:924) +==1505099== by 0x9D1B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505099== by 0x9D1B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505099== by 0x122E20: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505099== by 0x11DDCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505099== by 0x120996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505099== by 0x120836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505099== by 0x120ECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505099== by 0x11C1F5: main (TestStimulusFactory.cpp:19) +==1505099== +==1505099== Open file descriptor 115: +==1505099== +==1505099== +==1505099== Open file descriptor 112: +==1505099== +==1505099== +==1505099== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulusFactory_valgrind.txt +==1505099== +==1505099== +==1505099== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505099== +==1505099== +==1505099== +==1505099== HEAP SUMMARY: +==1505099== in use at exit: 996,049 bytes in 13,923 blocks +==1505099== total heap usage: 193,669 allocs, 179,746 frees, 1,595,528,991 bytes allocated +==1505099== +==1505099== LEAK SUMMARY: +==1505099== definitely lost: 0 bytes in 0 blocks +==1505099== indirectly lost: 0 bytes in 0 blocks +==1505099== possibly lost: 0 bytes in 0 blocks +==1505099== still reachable: 24 bytes in 2 blocks +==1505099== suppressed: 996,025 bytes in 13,921 blocks +==1505099== Reachable blocks (those to which a pointer was found) are not shown. +==1505099== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505099== +==1505099== For lists of detected and suppressed errors, rerun with: -s +==1505099== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 38) diff --git a/log-files/2024-02-21_13-45-57/TestStimulus_valgrind.txt b/log-files/2024-02-21_13-45-57/TestStimulus_valgrind.txt new file mode 100644 index 0000000000..dd5e12e3c8 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestStimulus_valgrind.txt @@ -0,0 +1,73 @@ +==1506903== Memcheck, a memory error detector +==1506903== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506903== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506903== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulus -malloc_debug -malloc_dump -memory_info +==1506903== Parent PID: 1488630 +==1506903== +==1506903== +==1506903== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506903== Open file descriptor 12: +==1506903== at 0x9B5007D: pipe (pipe.c:29) +==1506903== by 0x13F9707D: ??? +==1506903== by 0xEA934CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506903== by 0x969C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506903== by 0x9635D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506903== by 0x832CD38: PetscInitialize (pinit.c:924) +==1506903== by 0x819A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506903== by 0x819A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506903== by 0x123427: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1506903== by 0x11E823: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506903== by 0x120E66: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506903== by 0x120D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506903== by 0x121375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506903== by 0x11D025: main (TestStimulus.cpp:18) +==1506903== +==1506903== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506903== at 0x9B54A1C: __open_nocancel (open64_nocancel.c:39) +==1506903== by 0x9AD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506903== by 0x81CE822: ??? +==1506903== by 0x81CE96F: ??? +==1506903== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506903== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506903== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506903== by 0xEA932DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506903== by 0x969C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506903== by 0x9635D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506903== by 0x832CD38: PetscInitialize (pinit.c:924) +==1506903== by 0x819A153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506903== by 0x819A1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506903== by 0x123427: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1506903== by 0x11E823: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506903== by 0x120E66: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506903== by 0x120D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506903== by 0x121375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506903== by 0x11D025: main (TestStimulus.cpp:18) +==1506903== +==1506903== Open file descriptor 115: +==1506903== +==1506903== +==1506903== Open file descriptor 112: +==1506903== +==1506903== +==1506903== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulus_valgrind.txt +==1506903== +==1506903== +==1506903== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506903== +==1506903== +==1506903== +==1506903== HEAP SUMMARY: +==1506903== in use at exit: 995,569 bytes in 13,913 blocks +==1506903== total heap usage: 61,476 allocs, 47,563 frees, 1,571,615,829 bytes allocated +==1506903== +==1506903== LEAK SUMMARY: +==1506903== definitely lost: 0 bytes in 0 blocks +==1506903== indirectly lost: 0 bytes in 0 blocks +==1506903== possibly lost: 0 bytes in 0 blocks +==1506903== still reachable: 24 bytes in 2 blocks +==1506903== suppressed: 995,545 bytes in 13,911 blocks +==1506903== Reachable blocks (those to which a pointer was found) are not shown. +==1506903== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506903== +==1506903== For lists of detected and suppressed errors, rerun with: -s +==1506903== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestStokesFlowAssembler_valgrind.txt b/log-files/2024-02-21_13-45-57/TestStokesFlowAssembler_valgrind.txt new file mode 100644 index 0000000000..e38f655070 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestStokesFlowAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==1489740== Memcheck, a memory error detector +==1489740== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489740== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489740== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestStokesFlowAssembler -malloc_debug -malloc_dump -memory_info +==1489740== Parent PID: 1488630 +==1489740== +==1489740== +==1489740== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489740== Open file descriptor 12: +==1489740== at 0x82D707D: pipe (pipe.c:29) +==1489740== by 0x102C707D: ??? +==1489740== by 0xC15C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489740== by 0x893E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489740== by 0x88D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489740== by 0x6899D38: PetscInitialize (pinit.c:924) +==1489740== by 0x6771153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489740== by 0x67711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489740== by 0x12CFE0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489740== by 0x128839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489740== by 0x12AC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489740== by 0x12AB53: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489740== by 0x12B167: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489740== by 0x126EB5: main (TestStokesFlowAssembler.cpp:18) +==1489740== +==1489740== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489740== at 0x82DBA1C: __open_nocancel (open64_nocancel.c:39) +==1489740== by 0x825FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489740== by 0x7B23822: ??? +==1489740== by 0x7B2396F: ??? +==1489740== by 0xC2016DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489740== by 0xC201938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489740== by 0xC1B7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489740== by 0xC15C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489740== by 0x893E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489740== by 0x88D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489740== by 0x6899D38: PetscInitialize (pinit.c:924) +==1489740== by 0x6771153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489740== by 0x67711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489740== by 0x12CFE0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489740== by 0x128839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489740== by 0x12AC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489740== by 0x12AB53: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489740== by 0x12B167: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489740== by 0x126EB5: main (TestStokesFlowAssembler.cpp:18) +==1489740== +==1489740== Open file descriptor 115: +==1489740== +==1489740== +==1489740== Open file descriptor 112: +==1489740== +==1489740== +==1489740== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStokesFlowAssembler_valgrind.txt +==1489740== +==1489740== +==1489740== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489740== +==1489740== +==1489740== +==1489740== HEAP SUMMARY: +==1489740== in use at exit: 995,505 bytes in 13,913 blocks +==1489740== total heap usage: 60,897 allocs, 46,984 frees, 1,571,776,690 bytes allocated +==1489740== +==1489740== LEAK SUMMARY: +==1489740== definitely lost: 0 bytes in 0 blocks +==1489740== indirectly lost: 0 bytes in 0 blocks +==1489740== possibly lost: 0 bytes in 0 blocks +==1489740== still reachable: 24 bytes in 2 blocks +==1489740== suppressed: 995,481 bytes in 13,911 blocks +==1489740== Reachable blocks (those to which a pointer was found) are not shown. +==1489740== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489740== +==1489740== For lists of detected and suppressed errors, rerun with: -s +==1489740== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestStokesFlowSolver_valgrind.txt b/log-files/2024-02-21_13-45-57/TestStokesFlowSolver_valgrind.txt new file mode 100644 index 0000000000..beda98740b --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestStokesFlowSolver_valgrind.txt @@ -0,0 +1,73 @@ +==1489750== Memcheck, a memory error detector +==1489750== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489750== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489750== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestStokesFlowSolver -malloc_debug -malloc_dump -memory_info +==1489750== Parent PID: 1488630 +==1489750== +==1489750== +==1489750== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489750== Open file descriptor 12: +==1489750== at 0x82D707D: pipe (pipe.c:29) +==1489750== by 0x102C707D: ??? +==1489750== by 0xC15C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489750== by 0x893E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489750== by 0x88D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489750== by 0x6899D38: PetscInitialize (pinit.c:924) +==1489750== by 0x6771153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489750== by 0x67711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489750== by 0x158044: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489750== by 0x1529D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489750== by 0x155C4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489750== by 0x155B49: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489750== by 0x15615D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489750== by 0x1511D5: main (TestStokesFlowSolver.cpp:18) +==1489750== +==1489750== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489750== at 0x82DBA1C: __open_nocancel (open64_nocancel.c:39) +==1489750== by 0x825FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489750== by 0x7B23822: ??? +==1489750== by 0x7B2396F: ??? +==1489750== by 0xC2016DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489750== by 0xC201938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489750== by 0xC1B7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489750== by 0xC15C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489750== by 0x893E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489750== by 0x88D7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489750== by 0x6899D38: PetscInitialize (pinit.c:924) +==1489750== by 0x6771153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489750== by 0x67711A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489750== by 0x158044: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489750== by 0x1529D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489750== by 0x155C4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489750== by 0x155B49: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489750== by 0x15615D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489750== by 0x1511D5: main (TestStokesFlowSolver.cpp:18) +==1489750== +==1489750== Open file descriptor 115: +==1489750== +==1489750== +==1489750== Open file descriptor 112: +==1489750== +==1489750== +==1489750== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStokesFlowSolver_valgrind.txt +==1489750== +==1489750== +==1489750== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489750== +==1489750== +==1489750== +==1489750== HEAP SUMMARY: +==1489750== in use at exit: 995,446 bytes in 13,909 blocks +==1489750== total heap usage: 570,352 allocs, 556,443 frees, 1,764,229,059 bytes allocated +==1489750== +==1489750== LEAK SUMMARY: +==1489750== definitely lost: 0 bytes in 0 blocks +==1489750== indirectly lost: 0 bytes in 0 blocks +==1489750== possibly lost: 0 bytes in 0 blocks +==1489750== still reachable: 24 bytes in 2 blocks +==1489750== suppressed: 995,422 bytes in 13,907 blocks +==1489750== Reachable blocks (those to which a pointer was found) are not shown. +==1489750== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489750== +==1489750== For lists of detected and suppressed errors, rerun with: -s +==1489750== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2024-02-21_13-45-57/TestStreeterFibreGenerator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestStreeterFibreGenerator_valgrind.txt new file mode 100644 index 0000000000..4f204385ee --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestStreeterFibreGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==1505141== Memcheck, a memory error detector +==1505141== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505141== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505141== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStreeterFibreGenerator -malloc_debug -malloc_dump -memory_info +==1505141== Parent PID: 1488630 +==1505141== +==1505141== +==1505141== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505141== Open file descriptor 12: +==1505141== at 0xB63507D: pipe (pipe.c:29) +==1505141== by 0x13F9607D: ??? +==1505141== by 0xF7514CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505141== by 0xAF23418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505141== by 0xAEBCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505141== by 0x9B8DD38: PetscInitialize (pinit.c:924) +==1505141== by 0x9A65153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505141== by 0x9A651A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505141== by 0x11B488: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505141== by 0x11684D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505141== by 0x1192DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505141== by 0x11917C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505141== by 0x119813: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505141== by 0x114C75: main (TestStreeterFibreGenerator.cpp:19) +==1505141== +==1505141== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505141== at 0xB639A1C: __open_nocancel (open64_nocancel.c:39) +==1505141== by 0xB5BDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505141== by 0xAE17822: ??? +==1505141== by 0xAE1796F: ??? +==1505141== by 0xF7F66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505141== by 0xF7F6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505141== by 0xF7AC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505141== by 0xF7512DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505141== by 0xAF23418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505141== by 0xAEBCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505141== by 0x9B8DD38: PetscInitialize (pinit.c:924) +==1505141== by 0x9A65153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505141== by 0x9A651A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505141== by 0x11B488: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1505141== by 0x11684D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505141== by 0x1192DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505141== by 0x11917C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505141== by 0x119813: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505141== by 0x114C75: main (TestStreeterFibreGenerator.cpp:19) +==1505141== +==1505141== Open file descriptor 115: +==1505141== +==1505141== +==1505141== Open file descriptor 112: +==1505141== +==1505141== +==1505141== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStreeterFibreGenerator_valgrind.txt +==1505141== +==1505141== +==1505141== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505141== +==1505141== +==1505141== +==1505141== HEAP SUMMARY: +==1505141== in use at exit: 995,510 bytes in 13,909 blocks +==1505141== total heap usage: 4,502,639 allocs, 4,488,730 frees, 1,808,829,536 bytes allocated +==1505141== +==1505141== LEAK SUMMARY: +==1505141== definitely lost: 0 bytes in 0 blocks +==1505141== indirectly lost: 0 bytes in 0 blocks +==1505141== possibly lost: 0 bytes in 0 blocks +==1505141== still reachable: 24 bytes in 2 blocks +==1505141== suppressed: 995,486 bytes in 13,907 blocks +==1505141== Reachable blocks (those to which a pointer was found) are not shown. +==1505141== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505141== +==1505141== For lists of detected and suppressed errors, rerun with: -s +==1505141== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestT2SwapCellKiller_valgrind.txt b/log-files/2024-02-21_13-45-57/TestT2SwapCellKiller_valgrind.txt new file mode 100644 index 0000000000..e270e572cc --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestT2SwapCellKiller_valgrind.txt @@ -0,0 +1,73 @@ +==1490406== Memcheck, a memory error detector +==1490406== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490406== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490406== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestT2SwapCellKiller -malloc_debug -malloc_dump -memory_info +==1490406== Parent PID: 1488630 +==1490406== +==1490406== +==1490406== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490406== Open file descriptor 12: +==1490406== at 0x1006307D: pipe (pipe.c:29) +==1490406== by 0x18A1D07D: ??? +==1490406== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490406== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490406== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490406== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1490406== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490406== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490406== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490406== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490406== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490406== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490406== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490406== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) +==1490406== +==1490406== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490406== at 0x10067A1C: __open_nocancel (open64_nocancel.c:39) +==1490406== by 0xFFEBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490406== by 0xE49F822: ??? +==1490406== by 0xE49F96F: ??? +==1490406== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490406== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490406== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490406== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490406== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490406== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490406== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1490406== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490406== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490406== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490406== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490406== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490406== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490406== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490406== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) +==1490406== +==1490406== Open file descriptor 115: +==1490406== +==1490406== +==1490406== Open file descriptor 112: +==1490406== +==1490406== +==1490406== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestT2SwapCellKiller_valgrind.txt +==1490406== +==1490406== +==1490406== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490406== +==1490406== +==1490406== +==1490406== HEAP SUMMARY: +==1490406== in use at exit: 995,585 bytes in 13,914 blocks +==1490406== total heap usage: 91,005 allocs, 77,091 frees, 1,576,862,129 bytes allocated +==1490406== +==1490406== LEAK SUMMARY: +==1490406== definitely lost: 0 bytes in 0 blocks +==1490406== indirectly lost: 0 bytes in 0 blocks +==1490406== possibly lost: 0 bytes in 0 blocks +==1490406== still reachable: 56 bytes in 3 blocks +==1490406== suppressed: 995,529 bytes in 13,911 blocks +==1490406== Reachable blocks (those to which a pointer was found) are not shown. +==1490406== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490406== +==1490406== For lists of detected and suppressed errors, rerun with: -s +==1490406== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestTargetAreaLinearGrowthModifier_valgrind.txt b/log-files/2024-02-21_13-45-57/TestTargetAreaLinearGrowthModifier_valgrind.txt new file mode 100644 index 0000000000..d6f3948a59 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestTargetAreaLinearGrowthModifier_valgrind.txt @@ -0,0 +1,73 @@ +==1499349== Memcheck, a memory error detector +==1499349== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1499349== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1499349== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTargetAreaLinearGrowthModifier -malloc_debug -malloc_dump -memory_info +==1499349== Parent PID: 1488630 +==1499349== +==1499349== +==1499349== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1499349== Open file descriptor 12: +==1499349== at 0x1006307D: pipe (pipe.c:29) +==1499349== by 0x18A1D07D: ??? +==1499349== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1499349== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1499349== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1499349== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1499349== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1499349== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1499349== by 0x139DC3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1499349== by 0x13253D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1499349== by 0x13583C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1499349== by 0x1356DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1499349== by 0x135D73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1499349== by 0x130965: main (TestTargetAreaLinearGrowthModifier.cpp:19) +==1499349== +==1499349== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1499349== at 0x10067A1C: __open_nocancel (open64_nocancel.c:39) +==1499349== by 0xFFEBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1499349== by 0xE49F822: ??? +==1499349== by 0xE49F96F: ??? +==1499349== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1499349== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1499349== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1499349== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1499349== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1499349== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1499349== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1499349== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1499349== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1499349== by 0x139DC3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1499349== by 0x13253D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1499349== by 0x13583C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1499349== by 0x1356DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1499349== by 0x135D73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1499349== by 0x130965: main (TestTargetAreaLinearGrowthModifier.cpp:19) +==1499349== +==1499349== Open file descriptor 115: +==1499349== +==1499349== +==1499349== Open file descriptor 112: +==1499349== +==1499349== +==1499349== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTargetAreaLinearGrowthModifier_valgrind.txt +==1499349== +==1499349== +==1499349== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1499349== +==1499349== +==1499349== +==1499349== HEAP SUMMARY: +==1499349== in use at exit: 995,585 bytes in 13,914 blocks +==1499349== total heap usage: 600,850 allocs, 586,936 frees, 1,670,951,466 bytes allocated +==1499349== +==1499349== LEAK SUMMARY: +==1499349== definitely lost: 0 bytes in 0 blocks +==1499349== indirectly lost: 0 bytes in 0 blocks +==1499349== possibly lost: 0 bytes in 0 blocks +==1499349== still reachable: 56 bytes in 3 blocks +==1499349== suppressed: 995,529 bytes in 13,911 blocks +==1499349== Reachable blocks (those to which a pointer was found) are not shown. +==1499349== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1499349== +==1499349== For lists of detected and suppressed errors, rerun with: -s +==1499349== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestTetrahedralMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestTetrahedralMesh_valgrind.txt new file mode 100644 index 0000000000..f270c37167 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489096== Memcheck, a memory error detector +==1489096== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489096== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489096== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==1489096== Parent PID: 1488630 +==1489096== +==1489096== +==1489096== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489096== Open file descriptor 12: +==1489096== at 0x7EA407D: pipe (pipe.c:29) +==1489096== by 0xFD3507D: ??? +==1489096== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489096== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489096== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489096== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489096== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489096== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489096== by 0x1518AA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489096== by 0x14BB9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489096== by 0x14F310: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489096== by 0x14F1B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489096== by 0x14F847: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489096== by 0x149FC5: main (TestTetrahedralMesh.cpp:19) +==1489096== +==1489096== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489096== at 0x7EA8A1C: __open_nocancel (open64_nocancel.c:39) +==1489096== by 0x7E2CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489096== by 0x61F7822: ??? +==1489096== by 0x61F796F: ??? +==1489096== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489096== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489096== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489096== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489096== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489096== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489096== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489096== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489096== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489096== by 0x1518AA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489096== by 0x14BB9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489096== by 0x14F310: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489096== by 0x14F1B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489096== by 0x14F847: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489096== by 0x149FC5: main (TestTetrahedralMesh.cpp:19) +==1489096== +==1489096== Open file descriptor 115: +==1489096== +==1489096== +==1489096== Open file descriptor 112: +==1489096== +==1489096== +==1489096== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTetrahedralMesh_valgrind.txt +==1489096== +==1489096== +==1489096== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489096== +==1489096== +==1489096== +==1489096== HEAP SUMMARY: +==1489096== in use at exit: 998,009 bytes in 13,914 blocks +==1489096== total heap usage: 1,287,045 allocs, 1,273,131 frees, 1,642,110,035 bytes allocated +==1489096== +==1489096== LEAK SUMMARY: +==1489096== definitely lost: 0 bytes in 0 blocks +==1489096== indirectly lost: 0 bytes in 0 blocks +==1489096== possibly lost: 0 bytes in 0 blocks +==1489096== still reachable: 2,576 bytes in 3 blocks +==1489096== suppressed: 995,433 bytes in 13,911 blocks +==1489096== Reachable blocks (those to which a pointer was found) are not shown. +==1489096== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489096== +==1489096== For lists of detected and suppressed errors, rerun with: -s +==1489096== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestTimeAdaptivityController_valgrind.txt b/log-files/2024-02-21_13-45-57/TestTimeAdaptivityController_valgrind.txt new file mode 100644 index 0000000000..0e220f5a43 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestTimeAdaptivityController_valgrind.txt @@ -0,0 +1,73 @@ +==1489678== Memcheck, a memory error detector +==1489678== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489678== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489678== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestTimeAdaptivityController -malloc_debug -malloc_dump -memory_info +==1489678== Parent PID: 1488630 +==1489678== +==1489678== +==1489678== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489678== Open file descriptor 12: +==1489678== at 0x4CB607D: pipe (pipe.c:29) +==1489678== by 0xAEA607D: ??? +==1489678== by 0x89C04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489678== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489678== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489678== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1489678== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489678== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489678== by 0x111F68: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489678== by 0x10DB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489678== by 0x10FE62: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489678== by 0x10FD5D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489678== by 0x110371: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489678== by 0x10C375: main (TestTimeAdaptivityController.cpp:18) +==1489678== +==1489678== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489678== at 0x4CBAA1C: __open_nocancel (open64_nocancel.c:39) +==1489678== by 0x4C3EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489678== by 0x492E822: ??? +==1489678== by 0x492E96F: ??? +==1489678== by 0x8A656DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489678== by 0x8A65938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489678== by 0x8A1B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489678== by 0x89C02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489678== by 0x6271418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489678== by 0x620AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489678== by 0x4F01D38: PetscInitialize (pinit.c:924) +==1489678== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489678== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489678== by 0x111F68: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489678== by 0x10DB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489678== by 0x10FE62: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489678== by 0x10FD5D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489678== by 0x110371: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489678== by 0x10C375: main (TestTimeAdaptivityController.cpp:18) +==1489678== +==1489678== Open file descriptor 115: +==1489678== +==1489678== +==1489678== Open file descriptor 112: +==1489678== +==1489678== +==1489678== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimeAdaptivityController_valgrind.txt +==1489678== +==1489678== +==1489678== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489678== +==1489678== +==1489678== +==1489678== HEAP SUMMARY: +==1489678== in use at exit: 995,073 bytes in 13,913 blocks +==1489678== total heap usage: 57,564 allocs, 43,651 frees, 1,571,237,293 bytes allocated +==1489678== +==1489678== LEAK SUMMARY: +==1489678== definitely lost: 0 bytes in 0 blocks +==1489678== indirectly lost: 0 bytes in 0 blocks +==1489678== possibly lost: 0 bytes in 0 blocks +==1489678== still reachable: 24 bytes in 2 blocks +==1489678== suppressed: 995,049 bytes in 13,911 blocks +==1489678== Reachable blocks (those to which a pointer was found) are not shown. +==1489678== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489678== +==1489678== For lists of detected and suppressed errors, rerun with: -s +==1489678== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestTimeStepper_valgrind.txt b/log-files/2024-02-21_13-45-57/TestTimeStepper_valgrind.txt new file mode 100644 index 0000000000..021618f9fe --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestTimeStepper_valgrind.txt @@ -0,0 +1,73 @@ +==1488854== Memcheck, a memory error detector +==1488854== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488854== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488854== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestTimeStepper -malloc_debug -malloc_dump -memory_info +==1488854== Parent PID: 1488630 +==1488854== +==1488854== +==1488854== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488854== Open file descriptor 12: +==1488854== at 0x629407D: pipe (pipe.c:29) +==1488854== by 0xAEA407D: ??? +==1488854== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488854== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488854== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488854== by 0x4A8AD38: PetscInitialize (pinit.c:924) +==1488854== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488854== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488854== by 0x123201: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488854== by 0x11DDE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488854== by 0x120BB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488854== by 0x120A58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488854== by 0x1210EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488854== by 0x11C205: main (TestTimeStepper.cpp:19) +==1488854== +==1488854== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488854== at 0x6298A1C: __open_nocancel (open64_nocancel.c:39) +==1488854== by 0x621CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488854== by 0x492E822: ??? +==1488854== by 0x492E96F: ??? +==1488854== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488854== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488854== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488854== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488854== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488854== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488854== by 0x4A8AD38: PetscInitialize (pinit.c:924) +==1488854== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488854== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488854== by 0x123201: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488854== by 0x11DDE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488854== by 0x120BB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488854== by 0x120A58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488854== by 0x1210EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488854== by 0x11C205: main (TestTimeStepper.cpp:19) +==1488854== +==1488854== Open file descriptor 115: +==1488854== +==1488854== +==1488854== Open file descriptor 112: +==1488854== +==1488854== +==1488854== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimeStepper_valgrind.txt +==1488854== +==1488854== +==1488854== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488854== +==1488854== +==1488854== +==1488854== HEAP SUMMARY: +==1488854== in use at exit: 995,073 bytes in 13,913 blocks +==1488854== total heap usage: 57,767 allocs, 43,854 frees, 1,571,279,883 bytes allocated +==1488854== +==1488854== LEAK SUMMARY: +==1488854== definitely lost: 0 bytes in 0 blocks +==1488854== indirectly lost: 0 bytes in 0 blocks +==1488854== possibly lost: 0 bytes in 0 blocks +==1488854== still reachable: 24 bytes in 2 blocks +==1488854== suppressed: 995,049 bytes in 13,911 blocks +==1488854== Reachable blocks (those to which a pointer was found) are not shown. +==1488854== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488854== +==1488854== For lists of detected and suppressed errors, rerun with: -s +==1488854== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-02-21_13-45-57/TestTimer_valgrind.txt b/log-files/2024-02-21_13-45-57/TestTimer_valgrind.txt new file mode 100644 index 0000000000..dba3dad4de --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestTimer_valgrind.txt @@ -0,0 +1,73 @@ +==1488852== Memcheck, a memory error detector +==1488852== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488852== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488852== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestTimer -malloc_debug -malloc_dump -memory_info +==1488852== Parent PID: 1488630 +==1488852== +==1488852== +==1488852== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488852== Open file descriptor 12: +==1488852== at 0x4D9D07D: pipe (pipe.c:29) +==1488852== by 0xAEA607D: ??? +==1488852== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488852== by 0x6358418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488852== by 0x62F1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488852== by 0x4FE8D38: PetscInitialize (pinit.c:924) +==1488852== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488852== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488852== by 0x112190: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488852== by 0x10DE53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488852== by 0x11025A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488852== by 0x110155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488852== by 0x110769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488852== by 0x10C655: main (TestTimer.cpp:18) +==1488852== +==1488852== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488852== at 0x4DA1A1C: __open_nocancel (open64_nocancel.c:39) +==1488852== by 0x4D25BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488852== by 0x492E822: ??? +==1488852== by 0x492E96F: ??? +==1488852== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488852== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488852== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488852== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488852== by 0x6358418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488852== by 0x62F1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488852== by 0x4FE8D38: PetscInitialize (pinit.c:924) +==1488852== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488852== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488852== by 0x112190: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1488852== by 0x10DE53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488852== by 0x11025A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488852== by 0x110155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488852== by 0x110769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488852== by 0x10C655: main (TestTimer.cpp:18) +==1488852== +==1488852== Open file descriptor 115: +==1488852== +==1488852== +==1488852== Open file descriptor 112: +==1488852== +==1488852== +==1488852== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimer_valgrind.txt +==1488852== +==1488852== +==1488852== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488852== +==1488852== +==1488852== +==1488852== HEAP SUMMARY: +==1488852== in use at exit: 995,073 bytes in 13,913 blocks +==1488852== total heap usage: 57,571 allocs, 43,658 frees, 1,571,237,543 bytes allocated +==1488852== +==1488852== LEAK SUMMARY: +==1488852== definitely lost: 0 bytes in 0 blocks +==1488852== indirectly lost: 0 bytes in 0 blocks +==1488852== possibly lost: 0 bytes in 0 blocks +==1488852== still reachable: 24 bytes in 2 blocks +==1488852== suppressed: 995,049 bytes in 13,911 blocks +==1488852== Reachable blocks (those to which a pointer was found) are not shown. +==1488852== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488852== +==1488852== For lists of detected and suppressed errors, rerun with: -s +==1488852== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestToroidal2dMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestToroidal2dMesh_valgrind.txt new file mode 100644 index 0000000000..471828c14a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestToroidal2dMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489153== Memcheck, a memory error detector +==1489153== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489153== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489153== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidal2dMesh -malloc_debug -malloc_dump -memory_info +==1489153== Parent PID: 1488630 +==1489153== +==1489153== +==1489153== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489153== Open file descriptor 12: +==1489153== at 0x7EA407D: pipe (pipe.c:29) +==1489153== by 0xFD3507D: ??? +==1489153== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489153== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489153== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489153== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489153== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489153== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489153== by 0x125B47: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489153== by 0x120A23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489153== by 0x123378: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489153== by 0x123274: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489153== by 0x123887: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489153== by 0x11F225: main (TestToroidal2dMesh.cpp:18) +==1489153== +==1489153== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489153== at 0x7EA8A1C: __open_nocancel (open64_nocancel.c:39) +==1489153== by 0x7E2CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489153== by 0x61F7822: ??? +==1489153== by 0x61F796F: ??? +==1489153== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489153== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489153== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489153== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489153== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489153== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489153== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489153== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489153== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489153== by 0x125B47: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489153== by 0x120A23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489153== by 0x123378: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489153== by 0x123274: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489153== by 0x123887: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489153== by 0x11F225: main (TestToroidal2dMesh.cpp:18) +==1489153== +==1489153== Open file descriptor 115: +==1489153== +==1489153== +==1489153== Open file descriptor 112: +==1489153== +==1489153== +==1489153== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidal2dMesh_valgrind.txt +==1489153== +==1489153== +==1489153== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489153== +==1489153== +==1489153== +==1489153== HEAP SUMMARY: +==1489153== in use at exit: 995,457 bytes in 13,913 blocks +==1489153== total heap usage: 177,485 allocs, 163,572 frees, 1,585,781,493 bytes allocated +==1489153== +==1489153== LEAK SUMMARY: +==1489153== definitely lost: 0 bytes in 0 blocks +==1489153== indirectly lost: 0 bytes in 0 blocks +==1489153== possibly lost: 0 bytes in 0 blocks +==1489153== still reachable: 24 bytes in 2 blocks +==1489153== suppressed: 995,433 bytes in 13,911 blocks +==1489153== Reachable blocks (those to which a pointer was found) are not shown. +==1489153== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489153== +==1489153== For lists of detected and suppressed errors, rerun with: -s +==1489153== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestToroidal2dVertexMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestToroidal2dVertexMesh_valgrind.txt new file mode 100644 index 0000000000..23d7a8fe6d --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestToroidal2dVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489282== Memcheck, a memory error detector +==1489282== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489282== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489282== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidal2dVertexMesh -malloc_debug -malloc_dump -memory_info +==1489282== Parent PID: 1488630 +==1489282== +==1489282== +==1489282== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489282== Open file descriptor 12: +==1489282== at 0x7EA407D: pipe (pipe.c:29) +==1489282== by 0xFD3507D: ??? +==1489282== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489282== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489282== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489282== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489282== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489282== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489282== by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489282== by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489282== by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489282== by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489282== by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489282== by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19) +==1489282== +==1489282== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489282== at 0x7EA8A1C: __open_nocancel (open64_nocancel.c:39) +==1489282== by 0x7E2CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489282== by 0x61F7822: ??? +==1489282== by 0x61F796F: ??? +==1489282== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489282== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489282== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489282== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489282== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489282== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489282== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489282== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489282== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489282== by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489282== by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489282== by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489282== by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489282== by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489282== by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19) +==1489282== +==1489282== Open file descriptor 115: +==1489282== +==1489282== +==1489282== Open file descriptor 112: +==1489282== +==1489282== +==1489282== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidal2dVertexMesh_valgrind.txt +==1489282== +==1489282== +==1489282== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489282== +==1489282== +==1489282== +==1489282== HEAP SUMMARY: +==1489282== in use at exit: 995,457 bytes in 13,913 blocks +==1489282== total heap usage: 157,049 allocs, 143,136 frees, 1,579,925,573 bytes allocated +==1489282== +==1489282== LEAK SUMMARY: +==1489282== definitely lost: 0 bytes in 0 blocks +==1489282== indirectly lost: 0 bytes in 0 blocks +==1489282== possibly lost: 0 bytes in 0 blocks +==1489282== still reachable: 24 bytes in 2 blocks +==1489282== suppressed: 995,433 bytes in 13,911 blocks +==1489282== Reachable blocks (those to which a pointer was found) are not shown. +==1489282== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489282== +==1489282== For lists of detected and suppressed errors, rerun with: -s +==1489282== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestToroidalHoneycombMeshGenerator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestToroidalHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 0000000000..e29eb6fbb9 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestToroidalHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==1489154== Memcheck, a memory error detector +==1489154== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489154== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489154== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidalHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==1489154== Parent PID: 1488630 +==1489154== +==1489154== +==1489154== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489154== Open file descriptor 12: +==1489154== at 0x7D7907D: pipe (pipe.c:29) +==1489154== by 0xFD3507D: ??? +==1489154== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489154== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489154== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489154== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489154== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489154== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489154== by 0x11717D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489154== by 0x1125CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489154== by 0x114F48: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489154== by 0x114DE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489154== by 0x11547F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489154== by 0x1109F5: main (TestToroidalHoneycombMeshGenerator.cpp:19) +==1489154== +==1489154== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489154== at 0x7D7DA1C: __open_nocancel (open64_nocancel.c:39) +==1489154== by 0x7D01BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489154== by 0x7575822: ??? +==1489154== by 0x757596F: ??? +==1489154== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489154== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489154== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489154== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489154== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489154== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489154== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489154== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489154== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489154== by 0x11717D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489154== by 0x1125CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489154== by 0x114F48: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489154== by 0x114DE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489154== by 0x11547F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489154== by 0x1109F5: main (TestToroidalHoneycombMeshGenerator.cpp:19) +==1489154== +==1489154== Open file descriptor 115: +==1489154== +==1489154== +==1489154== Open file descriptor 112: +==1489154== +==1489154== +==1489154== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidalHoneycombMeshGenerator_valgrind.txt +==1489154== +==1489154== +==1489154== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489154== +==1489154== +==1489154== +==1489154== HEAP SUMMARY: +==1489154== in use at exit: 995,457 bytes in 13,913 blocks +==1489154== total heap usage: 118,122 allocs, 104,209 frees, 1,575,978,076 bytes allocated +==1489154== +==1489154== LEAK SUMMARY: +==1489154== definitely lost: 0 bytes in 0 blocks +==1489154== indirectly lost: 0 bytes in 0 blocks +==1489154== possibly lost: 0 bytes in 0 blocks +==1489154== still reachable: 24 bytes in 2 blocks +==1489154== suppressed: 995,433 bytes in 13,911 blocks +==1489154== Reachable blocks (those to which a pointer was found) are not shown. +==1489154== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489154== +==1489154== For lists of detected and suppressed errors, rerun with: -s +==1489154== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 0000000000..5c6ac8b7f4 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==1489283== Memcheck, a memory error detector +==1489283== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489283== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489283== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidalHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==1489283== Parent PID: 1488630 +==1489283== +==1489283== +==1489283== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489283== Open file descriptor 12: +==1489283== at 0x7D7907D: pipe (pipe.c:29) +==1489283== by 0xFD3507D: ??? +==1489283== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489283== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489283== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489283== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489283== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489283== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489283== by 0x11A0CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489283== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489283== by 0x116246: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489283== by 0x1160E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489283== by 0x11677D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489283== by 0x111D75: main (TestToroidalHoneycombVertexMeshGenerator.cpp:19) +==1489283== +==1489283== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489283== at 0x7D7DA1C: __open_nocancel (open64_nocancel.c:39) +==1489283== by 0x7D01BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489283== by 0x7575822: ??? +==1489283== by 0x757596F: ??? +==1489283== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489283== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489283== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489283== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489283== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489283== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489283== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489283== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489283== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489283== by 0x11A0CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489283== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489283== by 0x116246: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489283== by 0x1160E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489283== by 0x11677D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489283== by 0x111D75: main (TestToroidalHoneycombVertexMeshGenerator.cpp:19) +==1489283== +==1489283== Open file descriptor 115: +==1489283== +==1489283== +==1489283== Open file descriptor 112: +==1489283== +==1489283== +==1489283== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt +==1489283== +==1489283== +==1489283== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489283== +==1489283== +==1489283== +==1489283== HEAP SUMMARY: +==1489283== in use at exit: 995,457 bytes in 13,913 blocks +==1489283== total heap usage: 61,092 allocs, 47,179 frees, 1,571,662,522 bytes allocated +==1489283== +==1489283== LEAK SUMMARY: +==1489283== definitely lost: 0 bytes in 0 blocks +==1489283== indirectly lost: 0 bytes in 0 blocks +==1489283== possibly lost: 0 bytes in 0 blocks +==1489283== still reachable: 24 bytes in 2 blocks +==1489283== suppressed: 995,433 bytes in 13,911 blocks +==1489283== Reachable blocks (those to which a pointer was found) are not shown. +==1489283== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489283== +==1489283== For lists of detected and suppressed errors, rerun with: -s +==1489283== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestTransformations_valgrind.txt b/log-files/2024-02-21_13-45-57/TestTransformations_valgrind.txt new file mode 100644 index 0000000000..a01a89c323 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestTransformations_valgrind.txt @@ -0,0 +1,73 @@ +==1489100== Memcheck, a memory error detector +==1489100== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489100== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489100== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTransformations -malloc_debug -malloc_dump -memory_info +==1489100== Parent PID: 1488630 +==1489100== +==1489100== +==1489100== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489100== Open file descriptor 12: +==1489100== at 0x69AB07D: pipe (pipe.c:29) +==1489100== by 0xFD3507D: ??? +==1489100== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489100== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489100== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489100== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489100== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489100== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489100== by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489100== by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489100== by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489100== by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489100== by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489100== by 0x11FEB5: main (TestTransformations.cpp:19) +==1489100== +==1489100== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489100== at 0x69AFA1C: __open_nocancel (open64_nocancel.c:39) +==1489100== by 0x6933BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489100== by 0x61F7822: ??? +==1489100== by 0x61F796F: ??? +==1489100== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489100== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489100== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489100== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489100== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489100== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489100== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489100== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489100== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489100== by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489100== by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489100== by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489100== by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489100== by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489100== by 0x11FEB5: main (TestTransformations.cpp:19) +==1489100== +==1489100== Open file descriptor 115: +==1489100== +==1489100== +==1489100== Open file descriptor 112: +==1489100== +==1489100== +==1489100== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTransformations_valgrind.txt +==1489100== +==1489100== +==1489100== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489100== +==1489100== +==1489100== +==1489100== HEAP SUMMARY: +==1489100== in use at exit: 995,457 bytes in 13,913 blocks +==1489100== total heap usage: 126,251 allocs, 112,338 frees, 1,576,641,637 bytes allocated +==1489100== +==1489100== LEAK SUMMARY: +==1489100== definitely lost: 0 bytes in 0 blocks +==1489100== indirectly lost: 0 bytes in 0 blocks +==1489100== possibly lost: 0 bytes in 0 blocks +==1489100== still reachable: 24 bytes in 2 blocks +==1489100== suppressed: 995,433 bytes in 13,911 blocks +==1489100== Reachable blocks (those to which a pointer was found) are not shown. +==1489100== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489100== +==1489100== For lists of detected and suppressed errors, rerun with: -s +==1489100== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestTrianglesMeshReader_valgrind.txt b/log-files/2024-02-21_13-45-57/TestTrianglesMeshReader_valgrind.txt new file mode 100644 index 0000000000..efb1651ab3 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestTrianglesMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==1489207== Memcheck, a memory error detector +==1489207== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489207== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489207== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTrianglesMeshReader -malloc_debug -malloc_dump -memory_info +==1489207== Parent PID: 1488630 +==1489207== +==1489207== +==1489207== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489207== Open file descriptor 12: +==1489207== at 0x7D7907D: pipe (pipe.c:29) +==1489207== by 0xFD3507D: ??? +==1489207== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489207== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489207== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489207== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489207== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489207== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489207== by 0x124FBD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489207== by 0x11FF0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489207== by 0x122F54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489207== by 0x122DF4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489207== by 0x12348B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489207== by 0x11E335: main (TestTrianglesMeshReader.cpp:19) +==1489207== +==1489207== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489207== at 0x7D7DA1C: __open_nocancel (open64_nocancel.c:39) +==1489207== by 0x7D01BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489207== by 0x7575822: ??? +==1489207== by 0x757596F: ??? +==1489207== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489207== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489207== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489207== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489207== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489207== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489207== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489207== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489207== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489207== by 0x124FBD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489207== by 0x11FF0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489207== by 0x122F54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489207== by 0x122DF4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489207== by 0x12348B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489207== by 0x11E335: main (TestTrianglesMeshReader.cpp:19) +==1489207== +==1489207== Open file descriptor 115: +==1489207== +==1489207== +==1489207== Open file descriptor 112: +==1489207== +==1489207== +==1489207== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTrianglesMeshReader_valgrind.txt +==1489207== +==1489207== +==1489207== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489207== +==1489207== +==1489207== +==1489207== HEAP SUMMARY: +==1489207== in use at exit: 995,457 bytes in 13,913 blocks +==1489207== total heap usage: 162,161 allocs, 148,248 frees, 1,582,849,887 bytes allocated +==1489207== +==1489207== LEAK SUMMARY: +==1489207== definitely lost: 0 bytes in 0 blocks +==1489207== indirectly lost: 0 bytes in 0 blocks +==1489207== possibly lost: 0 bytes in 0 blocks +==1489207== still reachable: 24 bytes in 2 blocks +==1489207== suppressed: 995,433 bytes in 13,911 blocks +==1489207== Reachable blocks (those to which a pointer was found) are not shown. +==1489207== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489207== +==1489207== For lists of detected and suppressed errors, rerun with: -s +==1489207== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-02-21_13-45-57/TestTysonNovak2001OdeSystem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestTysonNovak2001OdeSystem_valgrind.txt new file mode 100644 index 0000000000..45c49016e5 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestTysonNovak2001OdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==1490152== Memcheck, a memory error detector +==1490152== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490152== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490152== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info +==1490152== Parent PID: 1488630 +==1490152== +==1490152== +==1490152== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490152== Open file descriptor 12: +==1490152== at 0xD25407D: pipe (pipe.c:29) +==1490152== by 0x18A1E07D: ??? +==1490152== by 0x13FEA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490152== by 0x104C4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490152== by 0x1045DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490152== by 0xF154D38: PetscInitialize (pinit.c:924) +==1490152== by 0xCE58153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490152== by 0xCE581A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490152== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490152== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490152== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490152== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490152== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490152== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) +==1490152== +==1490152== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490152== at 0xD258A1C: __open_nocancel (open64_nocancel.c:39) +==1490152== by 0xD1DCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490152== by 0xCE8C822: ??? +==1490152== by 0xCE8C96F: ??? +==1490152== by 0x1408F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490152== by 0x1408F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490152== by 0x14045922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490152== by 0x13FEA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490152== by 0x104C4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490152== by 0x1045DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490152== by 0xF154D38: PetscInitialize (pinit.c:924) +==1490152== by 0xCE58153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490152== by 0xCE581A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490152== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1490152== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490152== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490152== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490152== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490152== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) +==1490152== +==1490152== Open file descriptor 115: +==1490152== +==1490152== +==1490152== Open file descriptor 112: +==1490152== +==1490152== +==1490152== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt +==1490152== +==1490152== +==1490152== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490152== +==1490152== +==1490152== +==1490152== HEAP SUMMARY: +==1490152== in use at exit: 995,553 bytes in 13,913 blocks +==1490152== total heap usage: 70,542 allocs, 56,629 frees, 1,572,342,242 bytes allocated +==1490152== +==1490152== LEAK SUMMARY: +==1490152== definitely lost: 0 bytes in 0 blocks +==1490152== indirectly lost: 0 bytes in 0 blocks +==1490152== possibly lost: 0 bytes in 0 blocks +==1490152== still reachable: 24 bytes in 2 blocks +==1490152== suppressed: 995,529 bytes in 13,911 blocks +==1490152== Reachable blocks (those to which a pointer was found) are not shown. +==1490152== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490152== +==1490152== For lists of detected and suppressed errors, rerun with: -s +==1490152== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 40) diff --git a/log-files/2024-02-21_13-45-57/TestUblasCustomFunctions_valgrind.txt b/log-files/2024-02-21_13-45-57/TestUblasCustomFunctions_valgrind.txt new file mode 100644 index 0000000000..c7c12fbbe2 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestUblasCustomFunctions_valgrind.txt @@ -0,0 +1,73 @@ +==1489000== Memcheck, a memory error detector +==1489000== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489000== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489000== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestUblasCustomFunctions -malloc_debug -malloc_dump -memory_info +==1489000== Parent PID: 1488630 +==1489000== +==1489000== +==1489000== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489000== Open file descriptor 12: +==1489000== at 0x4E2C07D: pipe (pipe.c:29) +==1489000== by 0xAF3A07D: ??? +==1489000== by 0x8A4F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489000== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489000== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489000== by 0x5077D38: PetscInitialize (pinit.c:924) +==1489000== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489000== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489000== by 0x11B27E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489000== by 0x1164ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489000== by 0x118F42: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489000== by 0x118DE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489000== by 0x119479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489000== by 0x114915: main (TestUblasCustomFunctions.cpp:19) +==1489000== +==1489000== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489000== at 0x4E30A1C: __open_nocancel (open64_nocancel.c:39) +==1489000== by 0x4DB4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489000== by 0x49BD822: ??? +==1489000== by 0x49BD96F: ??? +==1489000== by 0x8AF46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489000== by 0x8AF4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489000== by 0x8AAA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489000== by 0x8A4F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489000== by 0x63E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489000== by 0x6382D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489000== by 0x5077D38: PetscInitialize (pinit.c:924) +==1489000== by 0x4989153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489000== by 0x49891A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489000== by 0x11B27E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489000== by 0x1164ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489000== by 0x118F42: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489000== by 0x118DE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489000== by 0x119479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489000== by 0x114915: main (TestUblasCustomFunctions.cpp:19) +==1489000== +==1489000== Open file descriptor 115: +==1489000== +==1489000== +==1489000== Open file descriptor 112: +==1489000== +==1489000== +==1489000== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestUblasCustomFunctions_valgrind.txt +==1489000== +==1489000== +==1489000== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489000== +==1489000== +==1489000== +==1489000== HEAP SUMMARY: +==1489000== in use at exit: 995,089 bytes in 13,913 blocks +==1489000== total heap usage: 57,584 allocs, 43,671 frees, 1,571,239,923 bytes allocated +==1489000== +==1489000== LEAK SUMMARY: +==1489000== definitely lost: 0 bytes in 0 blocks +==1489000== indirectly lost: 0 bytes in 0 blocks +==1489000== possibly lost: 0 bytes in 0 blocks +==1489000== still reachable: 24 bytes in 2 blocks +==1489000== suppressed: 995,065 bytes in 13,911 blocks +==1489000== Reachable blocks (those to which a pointer was found) are not shown. +==1489000== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489000== +==1489000== For lists of detected and suppressed errors, rerun with: -s +==1489000== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2024-02-21_13-45-57/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt new file mode 100644 index 0000000000..8e8e5c6487 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==1504271== Memcheck, a memory error detector +==1504271== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504271== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504271== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVanLeeuwen2009WntSwatCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==1504271== Parent PID: 1488630 +==1504271== +==1504271== +==1504271== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504271== Open file descriptor 12: +==1504271== at 0x11B6607D: pipe (pipe.c:29) +==1504271== by 0x1A6E107D: ??? +==1504271== by 0x158984CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504271== by 0x1146E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504271== by 0x11407D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504271== by 0x100FED38: PetscInitialize (pinit.c:924) +==1504271== by 0xFF6E153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504271== by 0xFF6E1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504271== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504271== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504271== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504271== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504271== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504271== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) +==1504271== +==1504271== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504271== at 0x11B6AA1C: __open_nocancel (open64_nocancel.c:39) +==1504271== by 0x11AEEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504271== by 0xFFA2822: ??? +==1504271== by 0xFFA296F: ??? +==1504271== by 0x1593D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504271== by 0x1593D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504271== by 0x158F3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504271== by 0x158982DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504271== by 0x1146E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504271== by 0x11407D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504271== by 0x100FED38: PetscInitialize (pinit.c:924) +==1504271== by 0xFF6E153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504271== by 0xFF6E1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504271== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504271== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504271== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504271== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504271== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504271== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) +==1504271== +==1504271== Open file descriptor 115: +==1504271== +==1504271== +==1504271== Open file descriptor 112: +==1504271== +==1504271== +==1504271== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt +==1504271== +==1504271== +==1504271== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504271== +==1504271== +==1504271== +==1504271== HEAP SUMMARY: +==1504271== in use at exit: 995,569 bytes in 13,913 blocks +==1504271== total heap usage: 531,582 allocs, 517,669 frees, 1,780,153,177 bytes allocated +==1504271== +==1504271== LEAK SUMMARY: +==1504271== definitely lost: 0 bytes in 0 blocks +==1504271== indirectly lost: 0 bytes in 0 blocks +==1504271== possibly lost: 0 bytes in 0 blocks +==1504271== still reachable: 24 bytes in 2 blocks +==1504271== suppressed: 995,545 bytes in 13,911 blocks +==1504271== Reachable blocks (those to which a pointer was found) are not shown. +==1504271== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504271== +==1504271== For lists of detected and suppressed errors, rerun with: -s +==1504271== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestVentilationProblem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestVentilationProblem_valgrind.txt new file mode 100644 index 0000000000..025711dd8f --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestVentilationProblem_valgrind.txt @@ -0,0 +1,73 @@ +==1504955== Memcheck, a memory error detector +==1504955== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504955== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504955== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestVentilationProblem -malloc_debug -malloc_dump -memory_info +==1504955== Parent PID: 1488630 +==1504955== +==1504955== +==1504955== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504955== Open file descriptor 12: +==1504955== at 0x6AC907D: pipe (pipe.c:29) +==1504955== by 0x1041407D: ??? +==1504955== by 0xBC944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504955== by 0x8044418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504955== by 0x7FDDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504955== by 0x6CD4D38: PetscInitialize (pinit.c:924) +==1504955== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504955== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504955== by 0x11769E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504955== by 0x1128D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504955== by 0x115638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504955== by 0x1154D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504955== by 0x115B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504955== by 0x110B55: main (TestVentilationProblem.cpp:19) +==1504955== +==1504955== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504955== at 0x6ACDA1C: __open_nocancel (open64_nocancel.c:39) +==1504955== by 0x6A51BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504955== by 0x6317822: ??? +==1504955== by 0x631796F: ??? +==1504955== by 0xBD396DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504955== by 0xBD39938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504955== by 0xBCEF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504955== by 0xBC942DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504955== by 0x8044418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504955== by 0x7FDDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504955== by 0x6CD4D38: PetscInitialize (pinit.c:924) +==1504955== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504955== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504955== by 0x11769E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504955== by 0x1128D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504955== by 0x115638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504955== by 0x1154D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504955== by 0x115B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504955== by 0x110B55: main (TestVentilationProblem.cpp:19) +==1504955== +==1504955== Open file descriptor 115: +==1504955== +==1504955== +==1504955== Open file descriptor 112: +==1504955== +==1504955== +==1504955== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVentilationProblem_valgrind.txt +==1504955== +==1504955== +==1504955== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504955== +==1504955== +==1504955== +==1504955== HEAP SUMMARY: +==1504955== in use at exit: 995,494 bytes in 13,909 blocks +==1504955== total heap usage: 5,819,137 allocs, 5,805,228 frees, 2,059,032,365 bytes allocated +==1504955== +==1504955== LEAK SUMMARY: +==1504955== definitely lost: 0 bytes in 0 blocks +==1504955== indirectly lost: 0 bytes in 0 blocks +==1504955== possibly lost: 0 bytes in 0 blocks +==1504955== still reachable: 24 bytes in 2 blocks +==1504955== suppressed: 995,470 bytes in 13,907 blocks +==1504955== Reachable blocks (those to which a pointer was found) are not shown. +==1504955== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504955== +==1504955== For lists of detected and suppressed errors, rerun with: -s +==1504955== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestVertexBasedCellPopulationForCrypt_valgrind.txt b/log-files/2024-02-21_13-45-57/TestVertexBasedCellPopulationForCrypt_valgrind.txt new file mode 100644 index 0000000000..09d34de66a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestVertexBasedCellPopulationForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==1504367== Memcheck, a memory error detector +==1504367== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504367== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504367== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info +==1504367== Parent PID: 1488630 +==1504367== +==1504367== +==1504367== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504367== Open file descriptor 12: +==1504367== at 0x118E107D: pipe (pipe.c:29) +==1504367== by 0x1A6DF07D: ??? +==1504367== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504367== by 0x111E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504367== by 0x11182D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504367== by 0xFE53D38: PetscInitialize (pinit.c:924) +==1504367== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504367== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504367== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504367== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504367== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504367== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504367== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504367== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) +==1504367== +==1504367== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504367== at 0x118E5A1C: __open_nocancel (open64_nocancel.c:39) +==1504367== by 0x11869BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504367== by 0x110DD822: ??? +==1504367== by 0x110DD96F: ??? +==1504367== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504367== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504367== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504367== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504367== by 0x111E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504367== by 0x11182D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504367== by 0xFE53D38: PetscInitialize (pinit.c:924) +==1504367== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504367== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504367== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504367== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504367== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504367== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504367== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504367== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) +==1504367== +==1504367== Open file descriptor 115: +==1504367== +==1504367== +==1504367== Open file descriptor 112: +==1504367== +==1504367== +==1504367== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt +==1504367== +==1504367== +==1504367== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504367== +==1504367== +==1504367== +==1504367== HEAP SUMMARY: +==1504367== in use at exit: 995,681 bytes in 13,915 blocks +==1504367== total heap usage: 66,021 allocs, 52,106 frees, 1,571,992,665 bytes allocated +==1504367== +==1504367== LEAK SUMMARY: +==1504367== definitely lost: 0 bytes in 0 blocks +==1504367== indirectly lost: 0 bytes in 0 blocks +==1504367== possibly lost: 0 bytes in 0 blocks +==1504367== still reachable: 136 bytes in 4 blocks +==1504367== suppressed: 995,545 bytes in 13,911 blocks +==1504367== Reachable blocks (those to which a pointer was found) are not shown. +==1504367== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504367== +==1504367== For lists of detected and suppressed errors, rerun with: -s +==1504367== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestVertexBasedCellPopulation_valgrind.txt b/log-files/2024-02-21_13-45-57/TestVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 0000000000..20172697ad --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==1490408== Memcheck, a memory error detector +==1490408== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490408== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490408== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==1490408== Parent PID: 1488630 +==1490408== +==1490408== +==1490408== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490408== Open file descriptor 12: +==1490408== at 0x1006307D: pipe (pipe.c:29) +==1490408== by 0x18A1D07D: ??? +==1490408== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490408== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490408== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490408== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1490408== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490408== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490408== by 0x3F6529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490408== by 0x3EB0B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490408== by 0x3F10D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490408== by 0x3F0F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490408== by 0x3F160B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490408== by 0x3E94D5: main (TestVertexBasedCellPopulation.cpp:19) +==1490408== +==1490408== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490408== at 0x10067A1C: __open_nocancel (open64_nocancel.c:39) +==1490408== by 0xFFEBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490408== by 0xE49F822: ??? +==1490408== by 0xE49F96F: ??? +==1490408== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490408== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490408== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490408== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490408== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490408== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490408== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1490408== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490408== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490408== by 0x3F6529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490408== by 0x3EB0B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490408== by 0x3F10D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490408== by 0x3F0F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490408== by 0x3F160B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490408== by 0x3E94D5: main (TestVertexBasedCellPopulation.cpp:19) +==1490408== +==1490408== Open file descriptor 115: +==1490408== +==1490408== +==1490408== Open file descriptor 112: +==1490408== +==1490408== +==1490408== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulation_valgrind.txt +==1490408== +==1490408== +==1490408== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490408== +==1490408== +==1490408== +==1490408== HEAP SUMMARY: +==1490408== in use at exit: 995,585 bytes in 13,914 blocks +==1490408== total heap usage: 183,166 allocs, 169,252 frees, 1,583,468,111 bytes allocated +==1490408== +==1490408== LEAK SUMMARY: +==1490408== definitely lost: 0 bytes in 0 blocks +==1490408== indirectly lost: 0 bytes in 0 blocks +==1490408== possibly lost: 0 bytes in 0 blocks +==1490408== still reachable: 56 bytes in 3 blocks +==1490408== suppressed: 995,529 bytes in 13,911 blocks +==1490408== Reachable blocks (those to which a pointer was found) are not shown. +==1490408== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490408== +==1490408== For lists of detected and suppressed errors, rerun with: -s +==1490408== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 40) diff --git a/log-files/2024-02-21_13-45-57/TestVertexBasedDivisionRules_valgrind.txt b/log-files/2024-02-21_13-45-57/TestVertexBasedDivisionRules_valgrind.txt new file mode 100644 index 0000000000..c11884d898 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestVertexBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==1490409== Memcheck, a memory error detector +==1490409== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1490409== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1490409== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVertexBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==1490409== Parent PID: 1488630 +==1490409== +==1490409== +==1490409== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1490409== Open file descriptor 12: +==1490409== at 0x1014A07D: pipe (pipe.c:29) +==1490409== by 0x18A1D07D: ??? +==1490409== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490409== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490409== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490409== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1490409== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490409== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490409== by 0x147723: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490409== by 0x14201D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490409== by 0x144D0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490409== by 0x144BAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490409== by 0x145241: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490409== by 0x140445: main (TestVertexBasedDivisionRules.cpp:19) +==1490409== +==1490409== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1490409== at 0x1014EA1C: __open_nocancel (open64_nocancel.c:39) +==1490409== by 0x100D2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1490409== by 0xE49F822: ??? +==1490409== by 0xE49F96F: ??? +==1490409== by 0x1402B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490409== by 0x1402B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490409== by 0x13FE1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1490409== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1490409== by 0xF96B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490409== by 0xF904D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1490409== by 0xE5FBD38: PetscInitialize (pinit.c:924) +==1490409== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1490409== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1490409== by 0x147723: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1490409== by 0x14201D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1490409== by 0x144D0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1490409== by 0x144BAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1490409== by 0x145241: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1490409== by 0x140445: main (TestVertexBasedDivisionRules.cpp:19) +==1490409== +==1490409== Open file descriptor 115: +==1490409== +==1490409== +==1490409== Open file descriptor 112: +==1490409== +==1490409== +==1490409== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedDivisionRules_valgrind.txt +==1490409== +==1490409== +==1490409== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1490409== +==1490409== +==1490409== +==1490409== HEAP SUMMARY: +==1490409== in use at exit: 995,585 bytes in 13,914 blocks +==1490409== total heap usage: 66,272 allocs, 52,358 frees, 1,572,185,689 bytes allocated +==1490409== +==1490409== LEAK SUMMARY: +==1490409== definitely lost: 0 bytes in 0 blocks +==1490409== indirectly lost: 0 bytes in 0 blocks +==1490409== possibly lost: 0 bytes in 0 blocks +==1490409== still reachable: 56 bytes in 3 blocks +==1490409== suppressed: 995,529 bytes in 13,911 blocks +==1490409== Reachable blocks (those to which a pointer was found) are not shown. +==1490409== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1490409== +==1490409== For lists of detected and suppressed errors, rerun with: -s +==1490409== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 43) diff --git a/log-files/2024-02-21_13-45-57/TestVertexCryptBoundaryForce_valgrind.txt b/log-files/2024-02-21_13-45-57/TestVertexCryptBoundaryForce_valgrind.txt new file mode 100644 index 0000000000..df8f66a191 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestVertexCryptBoundaryForce_valgrind.txt @@ -0,0 +1,73 @@ +==1504267== Memcheck, a memory error detector +==1504267== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504267== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504267== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info +==1504267== Parent PID: 1488630 +==1504267== +==1504267== +==1504267== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504267== Open file descriptor 12: +==1504267== at 0x1042A07D: pipe (pipe.c:29) +==1504267== by 0x1A6DF07D: ??? +==1504267== by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504267== by 0x121B2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504267== by 0x1214BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504267== by 0x10E42D38: PetscInitialize (pinit.c:924) +==1504267== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504267== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504267== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504267== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504267== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504267== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504267== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504267== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) +==1504267== +==1504267== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504267== at 0x1042EA1C: __open_nocancel (open64_nocancel.c:39) +==1504267== by 0x103B2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504267== by 0xFD5F822: ??? +==1504267== by 0xFD5F96F: ??? +==1504267== by 0x159956DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504267== by 0x15995938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504267== by 0x1594B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504267== by 0x158F02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504267== by 0x121B2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504267== by 0x1214BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504267== by 0x10E42D38: PetscInitialize (pinit.c:924) +==1504267== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504267== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504267== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1504267== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504267== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504267== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504267== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504267== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) +==1504267== +==1504267== Open file descriptor 115: +==1504267== +==1504267== +==1504267== Open file descriptor 112: +==1504267== +==1504267== +==1504267== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexCryptBoundaryForce_valgrind.txt +==1504267== +==1504267== +==1504267== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504267== +==1504267== +==1504267== +==1504267== HEAP SUMMARY: +==1504267== in use at exit: 995,601 bytes in 13,914 blocks +==1504267== total heap usage: 68,628 allocs, 54,714 frees, 1,572,211,383 bytes allocated +==1504267== +==1504267== LEAK SUMMARY: +==1504267== definitely lost: 0 bytes in 0 blocks +==1504267== indirectly lost: 0 bytes in 0 blocks +==1504267== possibly lost: 0 bytes in 0 blocks +==1504267== still reachable: 56 bytes in 3 blocks +==1504267== suppressed: 995,545 bytes in 13,911 blocks +==1504267== Reachable blocks (those to which a pointer was found) are not shown. +==1504267== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504267== +==1504267== For lists of detected and suppressed errors, rerun with: -s +==1504267== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestVertexElement_valgrind.txt b/log-files/2024-02-21_13-45-57/TestVertexElement_valgrind.txt new file mode 100644 index 0000000000..f434f1eb5d --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestVertexElement_valgrind.txt @@ -0,0 +1,73 @@ +==1489284== Memcheck, a memory error detector +==1489284== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489284== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489284== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexElement -malloc_debug -malloc_dump -memory_info +==1489284== Parent PID: 1488630 +==1489284== +==1489284== +==1489284== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489284== Open file descriptor 12: +==1489284== at 0x666607D: pipe (pipe.c:29) +==1489284== by 0xFD3207D: ??? +==1489284== by 0xB6794CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489284== by 0x7CB2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489284== by 0x7C4BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489284== by 0x6942D38: PetscInitialize (pinit.c:924) +==1489284== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489284== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489284== by 0x11E098: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489284== by 0x119413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489284== by 0x11C02C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489284== by 0x11BF27: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489284== by 0x11C53B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489284== by 0x117C15: main (TestVertexElement.cpp:18) +==1489284== +==1489284== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489284== at 0x666AA1C: __open_nocancel (open64_nocancel.c:39) +==1489284== by 0x65EEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489284== by 0x61F7822: ??? +==1489284== by 0x61F796F: ??? +==1489284== by 0xB71E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489284== by 0xB71E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489284== by 0xB6D4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489284== by 0xB6792DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489284== by 0x7CB2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489284== by 0x7C4BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489284== by 0x6942D38: PetscInitialize (pinit.c:924) +==1489284== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489284== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489284== by 0x11E098: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489284== by 0x119413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489284== by 0x11C02C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489284== by 0x11BF27: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489284== by 0x11C53B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489284== by 0x117C15: main (TestVertexElement.cpp:18) +==1489284== +==1489284== Open file descriptor 115: +==1489284== +==1489284== +==1489284== Open file descriptor 112: +==1489284== +==1489284== +==1489284== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexElement_valgrind.txt +==1489284== +==1489284== +==1489284== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489284== +==1489284== +==1489284== +==1489284== HEAP SUMMARY: +==1489284== in use at exit: 995,457 bytes in 13,913 blocks +==1489284== total heap usage: 60,065 allocs, 46,152 frees, 1,571,459,765 bytes allocated +==1489284== +==1489284== LEAK SUMMARY: +==1489284== definitely lost: 0 bytes in 0 blocks +==1489284== indirectly lost: 0 bytes in 0 blocks +==1489284== possibly lost: 0 bytes in 0 blocks +==1489284== still reachable: 24 bytes in 2 blocks +==1489284== suppressed: 995,433 bytes in 13,911 blocks +==1489284== Reachable blocks (those to which a pointer was found) are not shown. +==1489284== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489284== +==1489284== For lists of detected and suppressed errors, rerun with: -s +==1489284== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestVertexMeshReader_valgrind.txt b/log-files/2024-02-21_13-45-57/TestVertexMeshReader_valgrind.txt new file mode 100644 index 0000000000..1eae3c34d1 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestVertexMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==1489301== Memcheck, a memory error detector +==1489301== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489301== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489301== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMeshReader -malloc_debug -malloc_dump -memory_info +==1489301== Parent PID: 1488630 +==1489301== +==1489301== +==1489301== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489301== Open file descriptor 12: +==1489301== at 0x657F07D: pipe (pipe.c:29) +==1489301== by 0xFD3207D: ??? +==1489301== by 0xB6794CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489301== by 0x7BCB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489301== by 0x7B64D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489301== by 0x6859D38: PetscInitialize (pinit.c:924) +==1489301== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489301== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489301== by 0x1205C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489301== by 0x11B52D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489301== by 0x11E602: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489301== by 0x11E4A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489301== by 0x11EB39: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489301== by 0x119955: main (TestVertexMeshReader.cpp:19) +==1489301== +==1489301== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489301== at 0x6583A1C: __open_nocancel (open64_nocancel.c:39) +==1489301== by 0x6507BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489301== by 0x61F7822: ??? +==1489301== by 0x61F796F: ??? +==1489301== by 0xB71E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489301== by 0xB71E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489301== by 0xB6D4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489301== by 0xB6792DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489301== by 0x7BCB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489301== by 0x7B64D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489301== by 0x6859D38: PetscInitialize (pinit.c:924) +==1489301== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489301== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489301== by 0x1205C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489301== by 0x11B52D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489301== by 0x11E602: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489301== by 0x11E4A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489301== by 0x11EB39: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489301== by 0x119955: main (TestVertexMeshReader.cpp:19) +==1489301== +==1489301== Open file descriptor 115: +==1489301== +==1489301== +==1489301== Open file descriptor 112: +==1489301== +==1489301== +==1489301== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMeshReader_valgrind.txt +==1489301== +==1489301== +==1489301== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489301== +==1489301== +==1489301== +==1489301== HEAP SUMMARY: +==1489301== in use at exit: 995,457 bytes in 13,913 blocks +==1489301== total heap usage: 60,338 allocs, 46,425 frees, 1,571,851,785 bytes allocated +==1489301== +==1489301== LEAK SUMMARY: +==1489301== definitely lost: 0 bytes in 0 blocks +==1489301== indirectly lost: 0 bytes in 0 blocks +==1489301== possibly lost: 0 bytes in 0 blocks +==1489301== still reachable: 24 bytes in 2 blocks +==1489301== suppressed: 995,433 bytes in 13,911 blocks +==1489301== Reachable blocks (those to which a pointer was found) are not shown. +==1489301== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489301== +==1489301== For lists of detected and suppressed errors, rerun with: -s +==1489301== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestVertexMeshWriter_valgrind.txt b/log-files/2024-02-21_13-45-57/TestVertexMeshWriter_valgrind.txt new file mode 100644 index 0000000000..6342b2b1cf --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestVertexMeshWriter_valgrind.txt @@ -0,0 +1,73 @@ +==1489328== Memcheck, a memory error detector +==1489328== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489328== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489328== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMeshWriter -malloc_debug -malloc_dump -memory_info +==1489328== Parent PID: 1488630 +==1489328== +==1489328== +==1489328== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489328== Open file descriptor 12: +==1489328== at 0x7E6007D: pipe (pipe.c:29) +==1489328== by 0xFD3507D: ??? +==1489328== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489328== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489328== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489328== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489328== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489328== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489328== by 0x12CC41: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489328== by 0x1260AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489328== by 0x128CC8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489328== by 0x128B68: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489328== by 0x1291FF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489328== by 0x1244D5: main (TestVertexMeshWriter.cpp:19) +==1489328== +==1489328== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489328== at 0x7E64A1C: __open_nocancel (open64_nocancel.c:39) +==1489328== by 0x7DE8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489328== by 0x7575822: ??? +==1489328== by 0x757596F: ??? +==1489328== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489328== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489328== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489328== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489328== by 0x7683418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489328== by 0x761CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489328== by 0x62EBD38: PetscInitialize (pinit.c:924) +==1489328== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489328== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489328== by 0x12CC41: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489328== by 0x1260AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489328== by 0x128CC8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489328== by 0x128B68: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489328== by 0x1291FF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489328== by 0x1244D5: main (TestVertexMeshWriter.cpp:19) +==1489328== +==1489328== Open file descriptor 115: +==1489328== +==1489328== +==1489328== Open file descriptor 112: +==1489328== +==1489328== +==1489328== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMeshWriter_valgrind.txt +==1489328== +==1489328== +==1489328== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489328== +==1489328== +==1489328== +==1489328== HEAP SUMMARY: +==1489328== in use at exit: 995,457 bytes in 13,913 blocks +==1489328== total heap usage: 76,246 allocs, 62,333 frees, 1,574,905,472 bytes allocated +==1489328== +==1489328== LEAK SUMMARY: +==1489328== definitely lost: 0 bytes in 0 blocks +==1489328== indirectly lost: 0 bytes in 0 blocks +==1489328== possibly lost: 0 bytes in 0 blocks +==1489328== still reachable: 24 bytes in 2 blocks +==1489328== suppressed: 995,433 bytes in 13,911 blocks +==1489328== Reachable blocks (those to which a pointer was found) are not shown. +==1489328== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489328== +==1489328== For lists of detected and suppressed errors, rerun with: -s +==1489328== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestVertexMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestVertexMesh_valgrind.txt new file mode 100644 index 0000000000..0fc9d4df09 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1489285== Memcheck, a memory error detector +==1489285== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489285== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489285== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMesh -malloc_debug -malloc_dump -memory_info +==1489285== Parent PID: 1488630 +==1489285== +==1489285== +==1489285== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489285== Open file descriptor 12: +==1489285== at 0x7EA407D: pipe (pipe.c:29) +==1489285== by 0xFD3507D: ??? +==1489285== by 0xB6704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489285== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489285== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489285== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489285== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489285== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489285== by 0x14372D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489285== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489285== by 0x14137A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489285== by 0x14121A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489285== by 0x1418B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489285== by 0x13BF25: main (TestVertexMesh.cpp:19) +==1489285== +==1489285== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489285== at 0x7EA8A1C: __open_nocancel (open64_nocancel.c:39) +==1489285== by 0x7E2CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489285== by 0x61F7822: ??? +==1489285== by 0x61F796F: ??? +==1489285== by 0xB7156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489285== by 0xB715938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489285== by 0xB6CB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489285== by 0xB6702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489285== by 0x76C5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489285== by 0x765ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489285== by 0x6355D38: PetscInitialize (pinit.c:924) +==1489285== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489285== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489285== by 0x14372D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1489285== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489285== by 0x14137A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489285== by 0x14121A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489285== by 0x1418B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489285== by 0x13BF25: main (TestVertexMesh.cpp:19) +==1489285== +==1489285== Open file descriptor 115: +==1489285== +==1489285== +==1489285== Open file descriptor 112: +==1489285== +==1489285== +==1489285== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMesh_valgrind.txt +==1489285== +==1489285== +==1489285== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489285== +==1489285== +==1489285== +==1489285== HEAP SUMMARY: +==1489285== in use at exit: 998,009 bytes in 13,914 blocks +==1489285== total heap usage: 105,990 allocs, 92,076 frees, 1,579,521,892 bytes allocated +==1489285== +==1489285== LEAK SUMMARY: +==1489285== definitely lost: 0 bytes in 0 blocks +==1489285== indirectly lost: 0 bytes in 0 blocks +==1489285== possibly lost: 0 bytes in 0 blocks +==1489285== still reachable: 2,576 bytes in 3 blocks +==1489285== suppressed: 995,433 bytes in 13,911 blocks +==1489285== Reachable blocks (those to which a pointer was found) are not shown. +==1489285== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489285== +==1489285== For lists of detected and suppressed errors, rerun with: -s +==1489285== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestVisualizingWithParaviewTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestVisualizingWithParaviewTutorial_valgrind.txt new file mode 100644 index 0000000000..e9f8e5f763 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestVisualizingWithParaviewTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1504164== Memcheck, a memory error detector +==1504164== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504164== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504164== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVisualizingWithParaviewTutorial -malloc_debug -malloc_dump -memory_info +==1504164== Parent PID: 1488630 +==1504164== +==1504164== +==1504164== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504164== Open file descriptor 12: +==1504164== at 0x1002107D: pipe (pipe.c:29) +==1504164== by 0x18A1D07D: ??? +==1504164== by 0x13F844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504164== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504164== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504164== by 0xE593D38: PetscInitialize (pinit.c:924) +==1504164== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504164== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504164== by 0x124111: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504164== by 0x11F773: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504164== by 0x121C86: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504164== by 0x121B81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504164== by 0x122195: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504164== by 0x11DF75: main (TestVisualizingWithParaviewTutorial.cpp:18) +==1504164== +==1504164== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504164== at 0x10025A1C: __open_nocancel (open64_nocancel.c:39) +==1504164== by 0xFFA9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504164== by 0xF81D822: ??? +==1504164== by 0xF81D96F: ??? +==1504164== by 0x140296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504164== by 0x14029938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504164== by 0x13FDF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504164== by 0x13F842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504164== by 0xF929418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504164== by 0xF8C2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504164== by 0xE593D38: PetscInitialize (pinit.c:924) +==1504164== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504164== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504164== by 0x124111: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504164== by 0x11F773: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504164== by 0x121C86: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504164== by 0x121B81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504164== by 0x122195: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504164== by 0x11DF75: main (TestVisualizingWithParaviewTutorial.cpp:18) +==1504164== +==1504164== Open file descriptor 115: +==1504164== +==1504164== +==1504164== Open file descriptor 112: +==1504164== +==1504164== +==1504164== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVisualizingWithParaviewTutorial_valgrind.txt +==1504164== +==1504164== +==1504164== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504164== +==1504164== +==1504164== +==1504164== HEAP SUMMARY: +==1504164== in use at exit: 995,526 bytes in 13,910 blocks +==1504164== total heap usage: 11,745,038 allocs, 11,731,128 frees, 2,900,302,421 bytes allocated +==1504164== +==1504164== LEAK SUMMARY: +==1504164== definitely lost: 0 bytes in 0 blocks +==1504164== indirectly lost: 0 bytes in 0 blocks +==1504164== possibly lost: 0 bytes in 0 blocks +==1504164== still reachable: 56 bytes in 3 blocks +==1504164== suppressed: 995,470 bytes in 13,907 blocks +==1504164== Reachable blocks (those to which a pointer was found) are not shown. +==1504164== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504164== +==1504164== For lists of detected and suppressed errors, rerun with: -s +==1504164== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt b/log-files/2024-02-21_13-45-57/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt new file mode 100644 index 0000000000..3ba3b3328a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt @@ -0,0 +1,73 @@ +==1506881== Memcheck, a memory error detector +==1506881== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1506881== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1506881== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestVoltageInterpolaterOntoMechanicsMesh -malloc_debug -malloc_dump -memory_info +==1506881== Parent PID: 1488630 +==1506881== +==1506881== +==1506881== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1506881== Open file descriptor 12: +==1506881== at 0xB57107D: pipe (pipe.c:29) +==1506881== by 0x13F9607D: ??? +==1506881== by 0xF79E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506881== by 0xB8EC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506881== by 0xB885D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506881== by 0x9C00D38: PetscInitialize (pinit.c:924) +==1506881== by 0x9AD8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506881== by 0x9AD81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506881== by 0x11D9D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506881== by 0x119393: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506881== by 0x11B94C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506881== by 0x11B847: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506881== by 0x11BE5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506881== by 0x117B95: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) +==1506881== +==1506881== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1506881== at 0xB575A1C: __open_nocancel (open64_nocancel.c:39) +==1506881== by 0xB4F9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1506881== by 0xAE8A822: ??? +==1506881== by 0xAE8A96F: ??? +==1506881== by 0xF8436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506881== by 0xF843938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506881== by 0xF7F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1506881== by 0xF79E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1506881== by 0xB8EC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506881== by 0xB885D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1506881== by 0x9C00D38: PetscInitialize (pinit.c:924) +==1506881== by 0x9AD8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1506881== by 0x9AD81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1506881== by 0x11D9D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1506881== by 0x119393: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1506881== by 0x11B94C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1506881== by 0x11B847: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1506881== by 0x11BE5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1506881== by 0x117B95: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) +==1506881== +==1506881== Open file descriptor 115: +==1506881== +==1506881== +==1506881== Open file descriptor 112: +==1506881== +==1506881== +==1506881== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt +==1506881== +==1506881== +==1506881== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1506881== +==1506881== +==1506881== +==1506881== HEAP SUMMARY: +==1506881== in use at exit: 996,049 bytes in 13,923 blocks +==1506881== total heap usage: 568,188 allocs, 554,265 frees, 1,758,458,890 bytes allocated +==1506881== +==1506881== LEAK SUMMARY: +==1506881== definitely lost: 0 bytes in 0 blocks +==1506881== indirectly lost: 0 bytes in 0 blocks +==1506881== possibly lost: 0 bytes in 0 blocks +==1506881== still reachable: 24 bytes in 2 blocks +==1506881== suppressed: 996,025 bytes in 13,921 blocks +==1506881== Reachable blocks (those to which a pointer was found) are not shown. +==1506881== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1506881== +==1506881== For lists of detected and suppressed errors, rerun with: -s +==1506881== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 38) diff --git a/log-files/2024-02-21_13-45-57/TestVolumeTrackingModifier_valgrind.txt b/log-files/2024-02-21_13-45-57/TestVolumeTrackingModifier_valgrind.txt new file mode 100644 index 0000000000..9ebb5393c0 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestVolumeTrackingModifier_valgrind.txt @@ -0,0 +1,73 @@ +==1500985== Memcheck, a memory error detector +==1500985== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1500985== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1500985== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVolumeTrackingModifier -malloc_debug -malloc_dump -memory_info +==1500985== Parent PID: 1488630 +==1500985== +==1500985== +==1500985== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1500985== Open file descriptor 12: +==1500985== at 0xEBAC07D: pipe (pipe.c:29) +==1500985== by 0x18A1D07D: ??? +==1500985== by 0x140244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1500985== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1500985== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1500985== by 0xF499D38: PetscInitialize (pinit.c:924) +==1500985== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1500985== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1500985== by 0x20235E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1500985== by 0x1FA77F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1500985== by 0x1FDF12: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1500985== by 0x1FDE0D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1500985== by 0x1FE421: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1500985== by 0x1F8F75: main (TestVolumeTrackingModifier.cpp:18) +==1500985== +==1500985== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1500985== at 0xEBB0A1C: __open_nocancel (open64_nocancel.c:39) +==1500985== by 0xEB34BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1500985== by 0xE49F822: ??? +==1500985== by 0xE49F96F: ??? +==1500985== by 0x140C96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1500985== by 0x140C9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1500985== by 0x1407F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1500985== by 0x140242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1500985== by 0x1080B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1500985== by 0x107A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1500985== by 0xF499D38: PetscInitialize (pinit.c:924) +==1500985== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1500985== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1500985== by 0x20235E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1500985== by 0x1FA77F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1500985== by 0x1FDF12: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1500985== by 0x1FDE0D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1500985== by 0x1FE421: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1500985== by 0x1F8F75: main (TestVolumeTrackingModifier.cpp:18) +==1500985== +==1500985== Open file descriptor 115: +==1500985== +==1500985== +==1500985== Open file descriptor 112: +==1500985== +==1500985== +==1500985== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVolumeTrackingModifier_valgrind.txt +==1500985== +==1500985== +==1500985== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1500985== +==1500985== +==1500985== +==1500985== HEAP SUMMARY: +==1500985== in use at exit: 995,542 bytes in 13,911 blocks +==1500985== total heap usage: 11,273,073 allocs, 11,259,162 frees, 3,295,849,289 bytes allocated +==1500985== +==1500985== LEAK SUMMARY: +==1500985== definitely lost: 0 bytes in 0 blocks +==1500985== indirectly lost: 0 bytes in 0 blocks +==1500985== possibly lost: 0 bytes in 0 blocks +==1500985== still reachable: 72 bytes in 4 blocks +==1500985== suppressed: 995,470 bytes in 13,907 blocks +==1500985== Reachable blocks (those to which a pointer was found) are not shown. +==1500985== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1500985== +==1500985== For lists of detected and suppressed errors, rerun with: -s +==1500985== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestVoronoiVertexMeshGenerator_valgrind.txt b/log-files/2024-02-21_13-45-57/TestVoronoiVertexMeshGenerator_valgrind.txt new file mode 100644 index 0000000000..34becd3a59 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestVoronoiVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==1489335== Memcheck, a memory error detector +==1489335== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489335== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489335== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVoronoiVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==1489335== Parent PID: 1488630 +==1489335== +==1489335== +==1489335== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489335== Open file descriptor 12: +==1489335== at 0x69AB07D: pipe (pipe.c:29) +==1489335== by 0xFD3507D: ??? +==1489335== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489335== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489335== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489335== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489335== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489335== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489335== by 0x1216D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489335== by 0x11C6AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489335== by 0x11F25A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489335== by 0x11F0FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489335== by 0x11F791: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489335== by 0x11AAD5: main (TestVoronoiVertexMeshGenerator.cpp:19) +==1489335== +==1489335== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489335== at 0x69AFA1C: __open_nocancel (open64_nocancel.c:39) +==1489335== by 0x6933BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489335== by 0x61F7822: ??? +==1489335== by 0x61F796F: ??? +==1489335== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489335== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489335== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489335== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489335== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489335== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489335== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489335== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489335== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489335== by 0x1216D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489335== by 0x11C6AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489335== by 0x11F25A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489335== by 0x11F0FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489335== by 0x11F791: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489335== by 0x11AAD5: main (TestVoronoiVertexMeshGenerator.cpp:19) +==1489335== +==1489335== Open file descriptor 115: +==1489335== +==1489335== +==1489335== Open file descriptor 112: +==1489335== +==1489335== +==1489335== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVoronoiVertexMeshGenerator_valgrind.txt +==1489335== +==1489335== +==1489335== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489335== +==1489335== +==1489335== +==1489335== HEAP SUMMARY: +==1489335== in use at exit: 997,950 bytes in 13,910 blocks +==1489335== total heap usage: 459,454 allocs, 445,544 frees, 1,614,807,967 bytes allocated +==1489335== +==1489335== LEAK SUMMARY: +==1489335== definitely lost: 0 bytes in 0 blocks +==1489335== indirectly lost: 0 bytes in 0 blocks +==1489335== possibly lost: 0 bytes in 0 blocks +==1489335== still reachable: 2,576 bytes in 3 blocks +==1489335== suppressed: 995,374 bytes in 13,907 blocks +==1489335== Reachable blocks (those to which a pointer was found) are not shown. +==1489335== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489335== +==1489335== For lists of detected and suppressed errors, rerun with: -s +==1489335== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/TestVtkMeshReader_valgrind.txt b/log-files/2024-02-21_13-45-57/TestVtkMeshReader_valgrind.txt new file mode 100644 index 0000000000..f39c80889a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestVtkMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==1489208== Memcheck, a memory error detector +==1489208== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489208== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489208== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVtkMeshReader -malloc_debug -malloc_dump -memory_info +==1489208== Parent PID: 1488630 +==1489208== +==1489208== +==1489208== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489208== Open file descriptor 12: +==1489208== at 0x69AB07D: pipe (pipe.c:29) +==1489208== by 0xFD3507D: ??? +==1489208== by 0xB6BD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489208== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489208== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489208== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489208== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489208== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489208== by 0x12E1F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489208== by 0x12936D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489208== by 0x12C13E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489208== by 0x12BFDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489208== by 0x12C675: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489208== by 0x127795: main (TestVtkMeshReader.cpp:19) +==1489208== +==1489208== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489208== at 0x69AFA1C: __open_nocancel (open64_nocancel.c:39) +==1489208== by 0x6933BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489208== by 0x61F7822: ??? +==1489208== by 0x61F796F: ??? +==1489208== by 0xB7646DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489208== by 0xB764938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489208== by 0xB71A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489208== by 0xB6BD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489208== by 0x7FF7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489208== by 0x7F90D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489208== by 0x6C87D38: PetscInitialize (pinit.c:924) +==1489208== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489208== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489208== by 0x12E1F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489208== by 0x12936D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489208== by 0x12C13E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489208== by 0x12BFDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489208== by 0x12C675: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489208== by 0x127795: main (TestVtkMeshReader.cpp:19) +==1489208== +==1489208== Open file descriptor 115: +==1489208== +==1489208== +==1489208== Open file descriptor 112: +==1489208== +==1489208== +==1489208== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVtkMeshReader_valgrind.txt +==1489208== +==1489208== +==1489208== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489208== +==1489208== +==1489208== +==1489208== HEAP SUMMARY: +==1489208== in use at exit: 995,457 bytes in 13,913 blocks +==1489208== total heap usage: 174,268 allocs, 160,355 frees, 1,581,961,252 bytes allocated +==1489208== +==1489208== LEAK SUMMARY: +==1489208== definitely lost: 0 bytes in 0 blocks +==1489208== indirectly lost: 0 bytes in 0 blocks +==1489208== possibly lost: 0 bytes in 0 blocks +==1489208== still reachable: 24 bytes in 2 blocks +==1489208== suppressed: 995,433 bytes in 13,911 blocks +==1489208== Reachable blocks (those to which a pointer was found) are not shown. +==1489208== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489208== +==1489208== For lists of detected and suppressed errors, rerun with: -s +==1489208== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt b/log-files/2024-02-21_13-45-57/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt new file mode 100644 index 0000000000..e0a78698df --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt @@ -0,0 +1,73 @@ +==1489767== Memcheck, a memory error detector +==1489767== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489767== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489767== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestVtkNonlinearElasticitySolutionWriter -malloc_debug -malloc_dump -memory_info +==1489767== Parent PID: 1488630 +==1489767== +==1489767== +==1489767== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489767== Open file descriptor 12: +==1489767== at 0x7F3A07D: pipe (pipe.c:29) +==1489767== by 0x102C507D: ??? +==1489767== by 0xBC4F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489767== by 0x8514418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489767== by 0x84ADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489767== by 0x64FCD38: PetscInitialize (pinit.c:924) +==1489767== by 0x63D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489767== by 0x63D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489767== by 0x132248: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489767== by 0x12D1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489767== by 0x1302BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489767== by 0x13015C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489767== by 0x1307F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489767== by 0x12B615: main (TestVtkNonlinearElasticitySolutionWriter.cpp:19) +==1489767== +==1489767== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489767== at 0x7F3EA1C: __open_nocancel (open64_nocancel.c:39) +==1489767== by 0x7EC2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489767== by 0x7786822: ??? +==1489767== by 0x778696F: ??? +==1489767== by 0xBCF46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489767== by 0xBCF4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489767== by 0xBCAA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489767== by 0xBC4F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489767== by 0x8514418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489767== by 0x84ADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489767== by 0x64FCD38: PetscInitialize (pinit.c:924) +==1489767== by 0x63D4153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489767== by 0x63D41A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489767== by 0x132248: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489767== by 0x12D1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489767== by 0x1302BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489767== by 0x13015C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489767== by 0x1307F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489767== by 0x12B615: main (TestVtkNonlinearElasticitySolutionWriter.cpp:19) +==1489767== +==1489767== Open file descriptor 115: +==1489767== +==1489767== +==1489767== Open file descriptor 112: +==1489767== +==1489767== +==1489767== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt +==1489767== +==1489767== +==1489767== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489767== +==1489767== +==1489767== +==1489767== HEAP SUMMARY: +==1489767== in use at exit: 995,505 bytes in 13,913 blocks +==1489767== total heap usage: 431,657 allocs, 417,744 frees, 1,648,010,640 bytes allocated +==1489767== +==1489767== LEAK SUMMARY: +==1489767== definitely lost: 0 bytes in 0 blocks +==1489767== indirectly lost: 0 bytes in 0 blocks +==1489767== possibly lost: 0 bytes in 0 blocks +==1489767== still reachable: 24 bytes in 2 blocks +==1489767== suppressed: 995,481 bytes in 13,911 blocks +==1489767== Reachable blocks (those to which a pointer was found) are not shown. +==1489767== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489767== +==1489767== For lists of detected and suppressed errors, rerun with: -s +==1489767== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestWarnings_valgrind.txt b/log-files/2024-02-21_13-45-57/TestWarnings_valgrind.txt new file mode 100644 index 0000000000..05f6a6d664 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestWarnings_valgrind.txt @@ -0,0 +1,73 @@ +==1488855== Memcheck, a memory error detector +==1488855== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488855== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488855== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestWarnings -malloc_debug -malloc_dump -memory_info +==1488855== Parent PID: 1488630 +==1488855== +==1488855== +==1488855== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1488855== Open file descriptor 12: +==1488855== at 0x616B07D: pipe (pipe.c:29) +==1488855== by 0xAEA607D: ??? +==1488855== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488855== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488855== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488855== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488855== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488855== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488855== by 0x114FFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488855== by 0x1106CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488855== by 0x11308E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488855== by 0x112F2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488855== by 0x1135C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488855== by 0x10EAF5: main (TestWarnings.cpp:19) +==1488855== +==1488855== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1488855== at 0x616FA1C: __open_nocancel (open64_nocancel.c:39) +==1488855== by 0x60F3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1488855== by 0x5CAC822: ??? +==1488855== by 0x5CAC96F: ??? +==1488855== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488855== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488855== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1488855== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1488855== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488855== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1488855== by 0x4A22D38: PetscInitialize (pinit.c:924) +==1488855== by 0x48FA153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1488855== by 0x48FA1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1488855== by 0x114FFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1488855== by 0x1106CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1488855== by 0x11308E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1488855== by 0x112F2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1488855== by 0x1135C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1488855== by 0x10EAF5: main (TestWarnings.cpp:19) +==1488855== +==1488855== Open file descriptor 115: +==1488855== +==1488855== +==1488855== Open file descriptor 112: +==1488855== +==1488855== +==1488855== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWarnings_valgrind.txt +==1488855== +==1488855== +==1488855== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488855== +==1488855== +==1488855== +==1488855== HEAP SUMMARY: +==1488855== in use at exit: 995,073 bytes in 13,913 blocks +==1488855== total heap usage: 58,324 allocs, 44,411 frees, 1,571,380,092 bytes allocated +==1488855== +==1488855== LEAK SUMMARY: +==1488855== definitely lost: 0 bytes in 0 blocks +==1488855== indirectly lost: 0 bytes in 0 blocks +==1488855== possibly lost: 0 bytes in 0 blocks +==1488855== still reachable: 24 bytes in 2 blocks +==1488855== suppressed: 995,049 bytes in 13,911 blocks +==1488855== Reachable blocks (those to which a pointer was found) are not shown. +==1488855== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488855== +==1488855== For lists of detected and suppressed errors, rerun with: -s +==1488855== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2024-02-21_13-45-57/TestWntCellCycleOdeSystem_valgrind.txt b/log-files/2024-02-21_13-45-57/TestWntCellCycleOdeSystem_valgrind.txt new file mode 100644 index 0000000000..b72a430d41 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestWntCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==1504284== Memcheck, a memory error detector +==1504284== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504284== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504284== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==1504284== Parent PID: 1488630 +==1504284== +==1504284== +==1504284== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504284== Open file descriptor 12: +==1504284== at 0xFF5807D: pipe (pipe.c:29) +==1504284== by 0x1A6E007D: ??? +==1504284== by 0x148854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504284== by 0xFBA5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504284== by 0xFB3ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504284== by 0xE835D38: PetscInitialize (pinit.c:924) +==1504284== by 0xE6A5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504284== by 0xE6A51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504284== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504284== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504284== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504284== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504284== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504284== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) +==1504284== +==1504284== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504284== at 0xFF5CA1C: __open_nocancel (open64_nocancel.c:39) +==1504284== by 0xFEE0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504284== by 0xE6D9822: ??? +==1504284== by 0xE6D996F: ??? +==1504284== by 0x1492A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504284== by 0x1492A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504284== by 0x148E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504284== by 0x148852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504284== by 0xFBA5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504284== by 0xFB3ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504284== by 0xE835D38: PetscInitialize (pinit.c:924) +==1504284== by 0xE6A5153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504284== by 0xE6A51A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504284== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504284== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504284== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504284== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504284== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504284== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) +==1504284== +==1504284== Open file descriptor 115: +==1504284== +==1504284== +==1504284== Open file descriptor 112: +==1504284== +==1504284== +==1504284== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntCellCycleOdeSystem_valgrind.txt +==1504284== +==1504284== +==1504284== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504284== +==1504284== +==1504284== +==1504284== HEAP SUMMARY: +==1504284== in use at exit: 995,569 bytes in 13,913 blocks +==1504284== total heap usage: 197,704 allocs, 183,791 frees, 1,652,955,149 bytes allocated +==1504284== +==1504284== LEAK SUMMARY: +==1504284== definitely lost: 0 bytes in 0 blocks +==1504284== indirectly lost: 0 bytes in 0 blocks +==1504284== possibly lost: 0 bytes in 0 blocks +==1504284== still reachable: 24 bytes in 2 blocks +==1504284== suppressed: 995,545 bytes in 13,911 blocks +==1504284== Reachable blocks (those to which a pointer was found) are not shown. +==1504284== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504284== +==1504284== For lists of detected and suppressed errors, rerun with: -s +==1504284== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestWntConcentration_valgrind.txt b/log-files/2024-02-21_13-45-57/TestWntConcentration_valgrind.txt new file mode 100644 index 0000000000..44ee708e8a --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestWntConcentration_valgrind.txt @@ -0,0 +1,73 @@ +==1504239== Memcheck, a memory error detector +==1504239== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1504239== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1504239== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntConcentration -malloc_debug -malloc_dump -memory_info +==1504239== Parent PID: 1488630 +==1504239== +==1504239== +==1504239== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1504239== Open file descriptor 12: +==1504239== at 0x11A0A07D: pipe (pipe.c:29) +==1504239== by 0x1A6DF07D: ??? +==1504239== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504239== by 0x1122B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504239== by 0x111C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504239== by 0xFEBBD38: PetscInitialize (pinit.c:924) +==1504239== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504239== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504239== by 0x1449B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504239== by 0x13F409: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504239== by 0x14221A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504239== by 0x1420BA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504239== by 0x142751: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504239== by 0x13D825: main (TestWntConcentration.cpp:19) +==1504239== +==1504239== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1504239== at 0x11A0EA1C: __open_nocancel (open64_nocancel.c:39) +==1504239== by 0x11992BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1504239== by 0xFD5F822: ??? +==1504239== by 0xFD5F96F: ??? +==1504239== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504239== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504239== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1504239== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1504239== by 0x1122B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504239== by 0x111C4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1504239== by 0xFEBBD38: PetscInitialize (pinit.c:924) +==1504239== by 0xFD2B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1504239== by 0xFD2B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1504239== by 0x1449B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1504239== by 0x13F409: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1504239== by 0x14221A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1504239== by 0x1420BA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1504239== by 0x142751: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1504239== by 0x13D825: main (TestWntConcentration.cpp:19) +==1504239== +==1504239== Open file descriptor 115: +==1504239== +==1504239== +==1504239== Open file descriptor 112: +==1504239== +==1504239== +==1504239== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntConcentration_valgrind.txt +==1504239== +==1504239== +==1504239== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1504239== +==1504239== +==1504239== +==1504239== HEAP SUMMARY: +==1504239== in use at exit: 995,681 bytes in 13,915 blocks +==1504239== total heap usage: 68,795 allocs, 54,880 frees, 1,573,216,614 bytes allocated +==1504239== +==1504239== LEAK SUMMARY: +==1504239== definitely lost: 0 bytes in 0 blocks +==1504239== indirectly lost: 0 bytes in 0 blocks +==1504239== possibly lost: 0 bytes in 0 blocks +==1504239== still reachable: 136 bytes in 4 blocks +==1504239== suppressed: 995,545 bytes in 13,911 blocks +==1504239== Reachable blocks (those to which a pointer was found) are not shown. +==1504239== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1504239== +==1504239== For lists of detected and suppressed errors, rerun with: -s +==1504239== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2024-02-21_13-45-57/TestWritingPdeSolversTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestWritingPdeSolversTutorial_valgrind.txt new file mode 100644 index 0000000000..dd7e7d1b27 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestWritingPdeSolversTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1489569== Memcheck, a memory error detector +==1489569== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489569== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489569== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestWritingPdeSolversTutorial -malloc_debug -malloc_dump -memory_info +==1489569== Parent PID: 1488630 +==1489569== +==1489569== +==1489569== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489569== Open file descriptor 12: +==1489569== at 0x81CA07D: pipe (pipe.c:29) +==1489569== by 0x1014507D: ??? +==1489569== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489569== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489569== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489569== by 0x678CD38: PetscInitialize (pinit.c:924) +==1489569== by 0x6664153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489569== by 0x66641A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489569== by 0x14C16C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489569== by 0x147113: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489569== by 0x149DC4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489569== by 0x149CBF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489569== by 0x14A2D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489569== by 0x145915: main (TestWritingPdeSolversTutorial.cpp:18) +==1489569== +==1489569== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489569== at 0x81CEA1C: __open_nocancel (open64_nocancel.c:39) +==1489569== by 0x8152BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489569== by 0x7A16822: ??? +==1489569== by 0x7A1696F: ??? +==1489569== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489569== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489569== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489569== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489569== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489569== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489569== by 0x678CD38: PetscInitialize (pinit.c:924) +==1489569== by 0x6664153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489569== by 0x66641A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489569== by 0x14C16C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489569== by 0x147113: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489569== by 0x149DC4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489569== by 0x149CBF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489569== by 0x14A2D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489569== by 0x145915: main (TestWritingPdeSolversTutorial.cpp:18) +==1489569== +==1489569== Open file descriptor 115: +==1489569== +==1489569== +==1489569== Open file descriptor 112: +==1489569== +==1489569== +==1489569== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingPdeSolversTutorial_valgrind.txt +==1489569== +==1489569== +==1489569== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489569== +==1489569== +==1489569== +==1489569== HEAP SUMMARY: +==1489569== in use at exit: 995,910 bytes in 13,919 blocks +==1489569== total heap usage: 1,144,436 allocs, 1,130,517 frees, 1,691,076,793 bytes allocated +==1489569== +==1489569== LEAK SUMMARY: +==1489569== definitely lost: 0 bytes in 0 blocks +==1489569== indirectly lost: 0 bytes in 0 blocks +==1489569== possibly lost: 0 bytes in 0 blocks +==1489569== still reachable: 24 bytes in 2 blocks +==1489569== suppressed: 995,886 bytes in 13,917 blocks +==1489569== Reachable blocks (those to which a pointer was found) are not shown. +==1489569== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489569== +==1489569== For lists of detected and suppressed errors, rerun with: -s +==1489569== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 31) diff --git a/log-files/2024-02-21_13-45-57/TestWritingPdeSolversTwoTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestWritingPdeSolversTwoTutorial_valgrind.txt new file mode 100644 index 0000000000..c28f73f96e --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestWritingPdeSolversTwoTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==1489570== Memcheck, a memory error detector +==1489570== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489570== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489570== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestWritingPdeSolversTwoTutorial -malloc_debug -malloc_dump -memory_info +==1489570== Parent PID: 1488630 +==1489570== +==1489570== +==1489570== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489570== Open file descriptor 12: +==1489570== at 0x81CA07D: pipe (pipe.c:29) +==1489570== by 0x1014507D: ??? +==1489570== by 0xBFDC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489570== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489570== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489570== by 0x678CD38: PetscInitialize (pinit.c:924) +==1489570== by 0x6664153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489570== by 0x66641A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489570== by 0x13DDFA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489570== by 0x138DF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489570== by 0x13B99A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489570== by 0x13B895: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489570== by 0x13BEA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489570== by 0x1375F5: main (TestWritingPdeSolversTwoTutorial.cpp:18) +==1489570== +==1489570== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489570== at 0x81CEA1C: __open_nocancel (open64_nocancel.c:39) +==1489570== by 0x8152BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489570== by 0x7A16822: ??? +==1489570== by 0x7A1696F: ??? +==1489570== by 0xC0816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489570== by 0xC081938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489570== by 0xC037922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489570== by 0xBFDC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489570== by 0x87BE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489570== by 0x8757D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489570== by 0x678CD38: PetscInitialize (pinit.c:924) +==1489570== by 0x6664153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489570== by 0x66641A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489570== by 0x13DDFA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489570== by 0x138DF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489570== by 0x13B99A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489570== by 0x13B895: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489570== by 0x13BEA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489570== by 0x1375F5: main (TestWritingPdeSolversTwoTutorial.cpp:18) +==1489570== +==1489570== Open file descriptor 115: +==1489570== +==1489570== +==1489570== Open file descriptor 112: +==1489570== +==1489570== +==1489570== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingPdeSolversTwoTutorial_valgrind.txt +==1489570== +==1489570== +==1489570== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489570== +==1489570== +==1489570== +==1489570== HEAP SUMMARY: +==1489570== in use at exit: 995,969 bytes in 13,923 blocks +==1489570== total heap usage: 141,164 allocs, 127,241 frees, 1,600,545,449 bytes allocated +==1489570== +==1489570== LEAK SUMMARY: +==1489570== definitely lost: 0 bytes in 0 blocks +==1489570== indirectly lost: 0 bytes in 0 blocks +==1489570== possibly lost: 0 bytes in 0 blocks +==1489570== still reachable: 24 bytes in 2 blocks +==1489570== suppressed: 995,945 bytes in 13,921 blocks +==1489570== Reachable blocks (those to which a pointer was found) are not shown. +==1489570== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489570== +==1489570== For lists of detected and suppressed errors, rerun with: -s +==1489570== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 38 from 36) diff --git a/log-files/2024-02-21_13-45-57/TestWritingTestsTutorial_valgrind.txt b/log-files/2024-02-21_13-45-57/TestWritingTestsTutorial_valgrind.txt new file mode 100644 index 0000000000..113734b2d4 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestWritingTestsTutorial_valgrind.txt @@ -0,0 +1,36 @@ +==1488856== Memcheck, a memory error detector +==1488856== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1488856== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1488856== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestWritingTestsTutorial -malloc_debug -malloc_dump -memory_info +==1488856== Parent PID: 1488630 +==1488856== +==1488856== +==1488856== FILE DESCRIPTORS: 7 open (3 std) at exit. +==1488856== Open file descriptor 115: +==1488856== +==1488856== +==1488856== Open file descriptor 112: +==1488856== +==1488856== +==1488856== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingTestsTutorial_valgrind.txt +==1488856== +==1488856== +==1488856== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1488856== +==1488856== +==1488856== +==1488856== HEAP SUMMARY: +==1488856== in use at exit: 24 bytes in 2 blocks +==1488856== total heap usage: 3,071 allocs, 3,069 frees, 350,401 bytes allocated +==1488856== +==1488856== LEAK SUMMARY: +==1488856== definitely lost: 0 bytes in 0 blocks +==1488856== indirectly lost: 0 bytes in 0 blocks +==1488856== possibly lost: 0 bytes in 0 blocks +==1488856== still reachable: 24 bytes in 2 blocks +==1488856== suppressed: 0 bytes in 0 blocks +==1488856== Reachable blocks (those to which a pointer was found) are not shown. +==1488856== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1488856== +==1488856== For lists of detected and suppressed errors, rerun with: -s +==1488856== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2024-02-21_13-45-57/TestXmlMeshWriters_valgrind.txt b/log-files/2024-02-21_13-45-57/TestXmlMeshWriters_valgrind.txt new file mode 100644 index 0000000000..8f7cfdd3e8 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/TestXmlMeshWriters_valgrind.txt @@ -0,0 +1,73 @@ +==1489337== Memcheck, a memory error detector +==1489337== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1489337== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1489337== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestXmlMeshWriters -malloc_debug -malloc_dump -memory_info +==1489337== Parent PID: 1488630 +==1489337== +==1489337== +==1489337== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1489337== Open file descriptor 12: +==1489337== at 0x6CFF07D: pipe (pipe.c:29) +==1489337== by 0xFD3207D: ??? +==1489337== by 0xB95D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489337== by 0x834B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489337== by 0x82E4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489337== by 0x6FDBD38: PetscInitialize (pinit.c:924) +==1489337== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489337== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489337== by 0x141D14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489337== by 0x13CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489337== by 0x13FA20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489337== by 0x13F8C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489337== by 0x13FF57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489337== by 0x13B075: main (TestXmlMeshWriters.cpp:19) +==1489337== +==1489337== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1489337== at 0x6D03A1C: __open_nocancel (open64_nocancel.c:39) +==1489337== by 0x6C87BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1489337== by 0x61F7822: ??? +==1489337== by 0x61F796F: ??? +==1489337== by 0xBA026DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489337== by 0xBA02938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489337== by 0xB9B8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1489337== by 0xB95D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1489337== by 0x834B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489337== by 0x82E4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1489337== by 0x6FDBD38: PetscInitialize (pinit.c:924) +==1489337== by 0x61C3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1489337== by 0x61C31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1489337== by 0x141D14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==1489337== by 0x13CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1489337== by 0x13FA20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1489337== by 0x13F8C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1489337== by 0x13FF57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1489337== by 0x13B075: main (TestXmlMeshWriters.cpp:19) +==1489337== +==1489337== Open file descriptor 115: +==1489337== +==1489337== +==1489337== Open file descriptor 112: +==1489337== +==1489337== +==1489337== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestXmlMeshWriters_valgrind.txt +==1489337== +==1489337== +==1489337== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1489337== +==1489337== +==1489337== +==1489337== HEAP SUMMARY: +==1489337== in use at exit: 995,457 bytes in 13,913 blocks +==1489337== total heap usage: 465,995 allocs, 452,082 frees, 1,636,085,039 bytes allocated +==1489337== +==1489337== LEAK SUMMARY: +==1489337== definitely lost: 0 bytes in 0 blocks +==1489337== indirectly lost: 0 bytes in 0 blocks +==1489337== possibly lost: 0 bytes in 0 blocks +==1489337== still reachable: 24 bytes in 2 blocks +==1489337== suppressed: 995,433 bytes in 13,911 blocks +==1489337== Reachable blocks (those to which a pointer was found) are not shown. +==1489337== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1489337== +==1489337== For lists of detected and suppressed errors, rerun with: -s +==1489337== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 70 from 38) diff --git a/log-files/2024-02-21_13-45-57/Test_valgrind.txt b/log-files/2024-02-21_13-45-57/Test_valgrind.txt new file mode 100644 index 0000000000..de48e70101 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/Test_valgrind.txt @@ -0,0 +1,73 @@ +==1505925== Memcheck, a memory error detector +==1505925== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==1505925== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==1505925== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCodegen -malloc_debug -malloc_dump -memory_info +==1505925== Parent PID: 1488630 +==1505925== +==1505925== +==1505925== FILE DESCRIPTORS: 9 open (3 std) at exit. +==1505925== Open file descriptor 12: +==1505925== at 0x9E0607D: pipe (pipe.c:29) +==1505925== by 0x13F9607D: ??? +==1505925== by 0xEA914CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505925== by 0x9952418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505925== by 0x98EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505925== by 0x85E2D38: PetscInitialize (pinit.c:924) +==1505925== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505925== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505925== by 0x135779: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505925== by 0x12FB0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505925== by 0x132D44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505925== by 0x132BE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505925== by 0x13327B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505925== by 0x12ADA5: main (Test.cpp:19) +==1505925== +==1505925== Open file descriptor 8: /dev/shm/open_mpi.0000 +==1505925== at 0x9E0AA1C: __open_nocancel (open64_nocancel.c:39) +==1505925== by 0x9D8EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==1505925== by 0x8486822: ??? +==1505925== by 0x848696F: ??? +==1505925== by 0xEB386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505925== by 0xEB38938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505925== by 0xEAEE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==1505925== by 0xEA912DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==1505925== by 0x9952418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505925== by 0x98EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==1505925== by 0x85E2D38: PetscInitialize (pinit.c:924) +==1505925== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==1505925== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==1505925== by 0x135779: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==1505925== by 0x12FB0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==1505925== by 0x132D44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==1505925== by 0x132BE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==1505925== by 0x13327B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==1505925== by 0x12ADA5: main (Test.cpp:19) +==1505925== +==1505925== Open file descriptor 115: +==1505925== +==1505925== +==1505925== Open file descriptor 112: +==1505925== +==1505925== +==1505925== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test_valgrind.txt +==1505925== +==1505925== +==1505925== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==1505925== +==1505925== +==1505925== +==1505925== HEAP SUMMARY: +==1505925== in use at exit: 1,000,961 bytes in 13,921 blocks +==1505925== total heap usage: 953,636 allocs, 939,715 frees, 2,377,281,680 bytes allocated +==1505925== +==1505925== LEAK SUMMARY: +==1505925== definitely lost: 0 bytes in 0 blocks +==1505925== indirectly lost: 0 bytes in 0 blocks +==1505925== possibly lost: 0 bytes in 0 blocks +==1505925== still reachable: 5,475 bytes in 14 blocks +==1505925== suppressed: 995,486 bytes in 13,907 blocks +==1505925== Reachable blocks (those to which a pointer was found) are not shown. +==1505925== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==1505925== +==1505925== For lists of detected and suppressed errors, rerun with: -s +==1505925== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2024-02-21_13-45-57/index.html b/log-files/2024-02-21_13-45-57/index.html new file mode 100644 index 0000000000..ef329bceb4 --- /dev/null +++ b/log-files/2024-02-21_13-45-57/index.html @@ -0,0 +1,403 @@ + + + + + + Chaste valgrind memtest output + + +

Memtest output for commit 51ac4cda762ab11c62cb9f58f455f59448cc5a42 on branch fcooper8472-patch-1

+
+

Summary of 376 tests:

+

green: 376

+

orange: 0

+

red: 0

+
+

Test1D3DLinearEllipticSolver: No leaks found (test output)

+

Test1dMonodomainShannonCvodeBenchmarks: No leaks found (test output)

+

Test2dVertexBasedSimulationWithSrnModels: No leaks found (test output)

+

Test: No leaks found (test output)

+

TestAbstractAnalyticJacobian: No leaks found (test output)

+

TestAbstractContinuumMechanicsAssembler: No leaks found (test output)

+

TestAbstractContractionCellFactory: No leaks found (test output)

+

TestAbstractCvodeSystem: No leaks found (test output)

+

TestAbstractFeCableIntegralAssembler: No leaks found (test output)

+

TestAbstractFeSurfaceIntegralAssembler: No leaks found (test output)

+

TestAbstractFeVolumeIntegralAssembler: No leaks found (test output)

+

TestAbstractFunctionalCalculator: No leaks found (test output)

+

TestAbstractIvpOdeSolver: No leaks found (test output)

+

TestAbstractOdeSystem: No leaks found (test output)

+

TestAbstractPurkinjeCellFactory: No leaks found (test output)

+

TestAcinarUnitModels: No leaks found (test output)

+

TestAirwayBranch: No leaks found (test output)

+

TestAirwayGeneration: No leaks found (test output)

+

TestAirwayGenerator: No leaks found (test output)

+

TestAirwayPropertiesCalculator: No leaks found (test output)

+

TestAirwayRemesher: No leaks found (test output)

+

TestAirwayTreeWalker: No leaks found (test output)

+

TestAirwayWallModels: No leaks found (test output)

+

TestAlarcon2004OxygenBasedCellCycleOdeSystem: No leaks found (test output)

+

TestArchiveCell: No leaks found (test output)

+

TestArchiveFormat: No leaks found (test output)

+

TestArchiving: No leaks found (test output)

+

TestArchivingExtendedBidomain: No leaks found (test output)

+

TestArchivingHelperClasses: No leaks found (test output)

+

TestBackwardEulerIvpOdeSolver: No leaks found (test output)

+

TestBenchmarkPreconditionersForMeshIndependence: No leaks found (test output)

+

TestBidomainDistributedMesh: No leaks found (test output)

+

TestBidomainProblem: No leaks found (test output)

+

TestBidomainTissue: No leaks found (test output)

+

TestBidomainWithBathProblem: No leaks found (test output)

+

TestBidomainWithSvi: No leaks found (test output)

+

TestBoundaryConditionsContainer: No leaks found (test output)

+

TestBuskeForces: No leaks found (test output)

+

TestCaBasedCellPopulation: No leaks found (test output)

+

TestCaBasedDivisionRules: No leaks found (test output)

+

TestCaUpdateRules: No leaks found (test output)

+

TestCableTestProblem: No leaks found (test output)

+

TestCardiacElectroMechanicsFurtherFunctionality: No leaks found (test output)

+

TestCardiacElectroMechanicsProblem: No leaks found (test output)

+

TestCardiacSimulation: No leaks found (test output)

+

TestCardiacSimulationArchiver: No leaks found (test output)

+

TestCell: No leaks found (test output)

+

TestCellBasedCellProperties: No leaks found (test output)

+

TestCellBasedEllipticPdeSolver: No leaks found (test output)

+

TestCellBasedEllipticPdes: No leaks found (test output)

+

TestCellBasedEventHandler: No leaks found (test output)

+

TestCellBasedParabolicPdes: No leaks found (test output)

+

TestCellBetaCateninWriter: No leaks found (test output)

+

TestCellCycleModelOdeSolver: No leaks found (test output)

+

TestCellDataMaps: No leaks found (test output)

+

TestCellForCrypt: No leaks found (test output)

+

TestCellKillers: No leaks found (test output)

+

TestCellMutationStates: No leaks found (test output)

+

TestCellPopulationBoundaryConditions: No leaks found (test output)

+

TestCellPopulationCountWriters: No leaks found (test output)

+

TestCellPopulationEventWriters: No leaks found (test output)

+

TestCellPopulationWriters: No leaks found (test output)

+

TestCellProliferativeTypes: No leaks found (test output)

+

TestCellProperties: No leaks found (test output)

+

TestCellPropertyCollection: No leaks found (test output)

+

TestCellPropertyRegistry: No leaks found (test output)

+

TestCellSrn: No leaks found (test output)

+

TestCellWriters: No leaks found (test output)

+

TestCellsGenerator: No leaks found (test output)

+

TestCellwiseDataGradient: No leaks found (test output)

+

TestCentreBasedDivisionRules: No leaks found (test output)

+

TestChasteBuildInfo: No leaks found (test output)

+

TestChastePoint: No leaks found (test output)

+

TestChasteRegions: No leaks found (test output)

+

TestChebyshevIteration: No leaks found (test output)

+

TestCheckpointing: No leaks found (test output)

+

TestCitations: No leaks found (test output)

+

TestCodegenPresent: No leaks found (test output)

+

TestColumnDataReaderWriter: No leaks found (test output)

+

TestCombinedOdeSystem: No leaks found (test output)

+

TestCommandLineArguments: No leaks found (test output)

+

TestCompressibleNonlinearElasticitySolver: No leaks found (test output)

+

TestConductivityTensors: No leaks found (test output)

+

TestConstBoundaryCondition: No leaks found (test output)

+

TestContinuumMechanicsNeumannBcsAssembler: No leaks found (test output)

+

TestContractionModels: No leaks found (test output)

+

TestConvergenceTester: No leaks found (test output)

+

TestCoupledCableTestProblem: No leaks found (test output)

+

TestCreatingAndUsingANewCellBasedSimulationModifierTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellCycleModelTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellKillerTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellMutationStateTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellPropertyTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewForceTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewSrnModelTutorial: No leaks found (test output)

+

TestCreatingAndUsingNewCellBasedWritersTutorial: No leaks found (test output)

+

TestCryptCellsGenerator: No leaks found (test output)

+

TestCryptDivisionRules: No leaks found (test output)

+

TestCryptProjectionForce: No leaks found (test output)

+

TestCryptProjectionStatistics: No leaks found (test output)

+

TestCryptSimulation1d: No leaks found (test output)

+

TestCryptSimulation2dWithMeshBasedCellPopulation: No leaks found (test output)

+

TestCryptSimulation2dWithVertexBasedCellPopulation: No leaks found (test output)

+

TestCryptSimulationBoundaryCondition: No leaks found (test output)

+

TestCryptStatistics: No leaks found (test output)

+

TestCvodeAdaptor: No leaks found (test output)

+

TestCvodeCells: No leaks found (test output)

+

TestCvodeCellsWithDataClamp: No leaks found (test output)

+

TestCvodeWithJacobian: No leaks found (test output)

+

TestCwd: No leaks found (test output)

+

TestCylindrical2dMesh: No leaks found (test output)

+

TestCylindrical2dNodesOnlyMesh: No leaks found (test output)

+

TestCylindrical2dVertexMesh: No leaks found (test output)

+

TestCylindricalHoneycombMeshGenerator: No leaks found (test output)

+

TestCylindricalHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestDebug: No leaks found (test output)

+

TestDeltaNotchModifier: No leaks found (test output)

+

TestDeltaNotchOdeSystem: No leaks found (test output)

+

TestDiscreteSystemForceCalculator: No leaks found (test output)

+

TestDistanceMapCalculator: No leaks found (test output)

+

TestDistributedBoxCollection: No leaks found (test output)

+

TestDistributedQuadraticMesh: No leaks found (test output)

+

TestDistributedTetrahedralMesh: No leaks found (test output)

+

TestDistributedVector: No leaks found (test output)

+

TestDivisionBiasTrackingModifier: No leaks found (test output)

+

TestDynamicVentilation: No leaks found (test output)

+

TestDynamicallyLoadedCellModels: No leaks found (test output)

+

TestEdge: No leaks found (test output)

+

TestEdgeInteriorSrn: No leaks found (test output)

+

TestElectroMechanicsExactSolution: No leaks found (test output)

+

TestElectroMechanicsProblemDefinition: No leaks found (test output)

+

TestElectrodes: No leaks found (test output)

+

TestElement: No leaks found (test output)

+

TestElementAttributes: No leaks found (test output)

+

TestEllipticBoxDomainPdeModifier: No leaks found (test output)

+

TestEllipticGrowingDomainPdeModifier: No leaks found (test output)

+

TestException: No leaks found (test output)

+

TestExecutableSupport: No leaks found (test output)

+

TestExplicitCardiacMechanicsSolver: No leaks found (test output)

+

TestExtendedBidomainProblem: No leaks found (test output)

+

TestExtendedBidomainTissue: No leaks found (test output)

+

TestExtendedVsBidomainProblem: No leaks found (test output)

+

TestExtrinsicPullModifier: No leaks found (test output)

+

TestFemlabMeshReader: No leaks found (test output)

+

TestFibreReader: No leaks found (test output)

+

TestFibreReaderAbilityExtendedBidomainProblem: No leaks found (test output)

+

TestFibreWriter: No leaks found (test output)

+

TestFileComparison: No leaks found (test output)

+

TestFileFinder: No leaks found (test output)

+

TestFineCoarseMeshPair: No leaks found (test output)

+

TestFloatingPointDivisionByZero: No leaks found (test output)

+

TestFloatingPointDivisionByZeroPetsc: No leaks found (test output)

+

TestForces: No leaks found (test output)

+

TestFourthOrderTensor: No leaks found (test output)

+

TestGIModifiedModels: No leaks found (test output)

+

TestGRL1IvpOdeSolver: No leaks found (test output)

+

TestGRL2IvpOdeSolver: No leaks found (test output)

+

TestGaussianQuadratureRule: No leaks found (test output)

+

TestGeneralizedRushLarsen: No leaks found (test output)

+

TestGenericEventHandler: No leaks found (test output)

+

TestGmshMeshReader: No leaks found (test output)

+

TestGoldbeter1991OdeSystem: No leaks found (test output)

+

TestHdf5Converters: No leaks found (test output)

+

TestHdf5DataReader: No leaks found (test output)

+

TestHdf5DataWriter: No leaks found (test output)

+

TestHdf5ToVisualizerConverters: No leaks found (test output)

+

TestHeartConfig: No leaks found (test output)

+

TestHeartEventHandler: No leaks found (test output)

+

TestHeartFileFinder: No leaks found (test output)

+

TestHeartGeometryInformation: No leaks found (test output)

+

TestHeartRegionCodes: No leaks found (test output)

+

TestHelloWorld: No leaks found (test output)

+

TestHeterogeneousConductivities: No leaks found (test output)

+

TestHeun2IvpOdeSolver: No leaks found (test output)

+

TestHodgkinHuxleySquidAxon1952OriginalOdeSystem: No leaks found (test output)

+

TestHoneycombMeshGenerator: No leaks found (test output)

+

TestHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestImpedancePostProcessor: No leaks found (test output)

+

TestImplicitCardiacMechanicsSolver: No leaks found (test output)

+

TestIncompressibleNonlinearElasticitySolver: No leaks found (test output)

+

TestIonicModels: No leaks found (test output)

+

TestIonicModelsWithSacs: No leaks found (test output)

+

TestLinearBasisFunction: No leaks found (test output)

+

TestLinearParabolicPdeSystemForCoupledOdeSystem: No leaks found (test output)

+

TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver: No leaks found (test output)

+

TestLinearSpringWithVariableSpringConstantsForce: No leaks found (test output)

+

TestLinearSystem: No leaks found (test output)

+

TestLobePropertiesCalculator: No leaks found (test output)

+

TestLogFile: No leaks found (test output)

+

TestMajorAirwaysCentreLinesCleaner: No leaks found (test output)

+

TestMaterialLaws: No leaks found (test output)

+

TestMathsCustomFunctions: No leaks found (test output)

+

TestMatrixVentilationProblem: No leaks found (test output)

+

TestMemfemMeshReader: No leaks found (test output)

+

TestMeshBasedCellPopulation: No leaks found (test output)

+

TestMeshBasedCellPopulationWithGhostNodes: No leaks found (test output)

+

TestMeshWriters: No leaks found (test output)

+

TestMirams2010WntOdeSystem: No leaks found (test output)

+

TestMixedDimensionMesh: No leaks found (test output)

+

TestMockEulerIvpOdeSolver: No leaks found (test output)

+

TestModernCppFeatures: No leaks found (test output)

+

TestModifiers: No leaks found (test output)

+

TestMonodomainConductionVelocity: No leaks found (test output)

+

TestMonodomainFitzHughNagumo: No leaks found (test output)

+

TestMonodomainMassLumping: No leaks found (test output)

+

TestMonodomainProblem: No leaks found (test output)

+

TestMonodomainPurkinjeAssemblersAndSolver: No leaks found (test output)

+

TestMonodomainPurkinjeProblem: No leaks found (test output)

+

TestMonodomainStiffnessMatrixAssembler: No leaks found (test output)

+

TestMonodomainTissue: No leaks found (test output)

+

TestMonodomainWithSvi: No leaks found (test output)

+

TestMonodomainWithTimeAdaptivity: No leaks found (test output)

+

TestMoreMechanics: No leaks found (test output)

+

TestMultiLobeAirwayGenerator: No leaks found (test output)

+

TestMutableMesh: No leaks found (test output)

+

TestMutableMeshRemesh: No leaks found (test output)

+

TestMutableVertexMesh: No leaks found (test output)

+

TestMutableVertexMeshOperationsWithPopulationSrn: No leaks found (test output)

+

TestMutableVertexMeshReMesh: No leaks found (test output)

+

TestMutableVertexMeshRosetteMethods: No leaks found (test output)

+

TestNeumannStimulus: No leaks found (test output)

+

TestNhsModelWithBackwardSolver: No leaks found (test output)

+

TestNode: No leaks found (test output)

+

TestNodeAttributes: No leaks found (test output)

+

TestNodeBasedCellPopulation: No leaks found (test output)

+

TestNodeBasedCellPopulationParallelMethods: No leaks found (test output)

+

TestNodeBasedCellPopulationWithBuskeUpdate: No leaks found (test output)

+

TestNodeBasedCellPopulationWithParticles: No leaks found (test output)

+

TestNodesOnlyMesh: No leaks found (test output)

+

TestNonCachedTetrahedralMesh: No leaks found (test output)

+

TestNonlinearElasticityTools: No leaks found (test output)

+

TestNonlinearSolvers: No leaks found (test output)

+

TestNumericFileComparison: No leaks found (test output)

+

TestNumericalMethods: No leaks found (test output)

+

TestObjectCommunicator: No leaks found (test output)

+

TestObsoleteBoxCollection: No leaks found (test output)

+

TestOdeBasedCellCycleModels: No leaks found (test output)

+

TestOdeBasedCellCycleModelsForCrypt: No leaks found (test output)

+

TestOdeBasedSrnModels: No leaks found (test output)

+

TestOdeLinearSystemSolver: No leaks found (test output)

+

TestOffLatticeCryptProjectionSimulation: No leaks found (test output)

+

TestOffLatticeSimulation3d: No leaks found (test output)

+

TestOffLatticeSimulation: No leaks found (test output)

+

TestOffLatticeSimulationWithBuskeForces: No leaks found (test output)

+

TestOffLatticeSimulationWithNodeBasedCellPopulation: No leaks found (test output)

+

TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d: No leaks found (test output)

+

TestOffLatticeSimulationWithPdes: No leaks found (test output)

+

TestOffLatticeSimulationWithVertexBasedCellPopulation: No leaks found (test output)

+

TestOnLatticeSimulationWithCaBasedCellPopulation: No leaks found (test output)

+

TestOnLatticeSimulationWithPdes: No leaks found (test output)

+

TestOnLatticeSimulationWithPottsBasedCellPopulation: No leaks found (test output)

+

TestOperatorSplittingMonodomainSolver: No leaks found (test output)

+

TestOutputDirectoryFifoQueue: No leaks found (test output)

+

TestOutputFileHandler: No leaks found (test output)

+

TestPCBlockDiagonal: No leaks found (test output)

+

TestPCLDUFactorisation: No leaks found (test output)

+

TestPCTwoLevelsBlockDiagonal: No leaks found (test output)

+

TestPapillaryFibreCalculator: No leaks found (test output)

+

TestParabolicBoxDomainPdeModifier: No leaks found (test output)

+

TestParabolicGrowingDomainPdeModifier: No leaks found (test output)

+

TestParallelCellsGenerator: No leaks found (test output)

+

TestParallelColumnDataReaderWriter: No leaks found (test output)

+

TestParallelWriterPerformance: No leaks found (test output)

+

TestPdeSimulationTime: No leaks found (test output)

+

TestPdeTestClasses: No leaks found (test output)

+

TestPerElementWriter: No leaks found (test output)

+

TestPeriodicNodeBasedCellPopulationParallelMethods: No leaks found (test output)

+

TestPeriodicNodesOnlyMesh: No leaks found (test output)

+

TestPetscEvents: No leaks found (test output)

+

TestPetscMatTools: No leaks found (test output)

+

TestPetscSetup: No leaks found (test output)

+

TestPetscTools2: No leaks found (test output)

+

TestPetscTools: No leaks found (test output)

+

TestPetscVecTools: No leaks found (test output)

+

TestPlaneStimulusCellFactory: No leaks found (test output)

+

TestPostProcessingWriter: No leaks found (test output)

+

TestPottsBasedCellPopulation: No leaks found (test output)

+

TestPottsBasedCryptSimulation: No leaks found (test output)

+

TestPottsElement: No leaks found (test output)

+

TestPottsMesh: No leaks found (test output)

+

TestPottsMeshGenerator: No leaks found (test output)

+

TestPottsMeshReader: No leaks found (test output)

+

TestPottsMeshWriter: No leaks found (test output)

+

TestPottsUpdateRules: No leaks found (test output)

+

TestProblemDefinitions: No leaks found (test output)

+

TestProgressReporter: No leaks found (test output)

+

TestPropagationPropertiesCalculator: No leaks found (test output)

+

TestPseudoEcgCalculator: No leaks found (test output)

+

TestQuadraticBasisFunction: No leaks found (test output)

+

TestQuadraticMesh: No leaks found (test output)

+

TestQuadraturePointsGroup: No leaks found (test output)

+

TestRKC21IvpOdeSolver: No leaks found (test output)

+

TestRandomNumberGenerator: No leaks found (test output)

+

TestReplicatableVector: No leaks found (test output)

+

TestRestitutionStimuli: No leaks found (test output)

+

TestRungeKuttaFehlbergIvpOdeSolver: No leaks found (test output)

+

TestRunningContactInhibitionSimulationsTutorial: No leaks found (test output)

+

TestRunningCryptSimulationsWithMutationsTutorial: No leaks found (test output)

+

TestRunningDeltaNotchSimulationsTutorial: No leaks found (test output)

+

TestRunningDifferentialAdhesionSimulationsTutorial: No leaks found (test output)

+

TestRunningMeshBasedCryptSimulationsTutorial: No leaks found (test output)

+

TestRunningMeshBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningNodeBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningPottsBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningTumourSpheroidSimulationsTutorial: No leaks found (test output)

+

TestRunningVertexBasedCryptSimulationsTutorial: No leaks found (test output)

+

TestRunningVertexBasedSimulationsTutorial: No leaks found (test output)

+

TestRushLarsen: No leaks found (test output)

+

TestShovingCaBasedDivisionRules: No leaks found (test output)

+

TestSimpleCellCycleModels: No leaks found (test output)

+

TestSimpleCellCycleModelsForCrypt: No leaks found (test output)

+

TestSimpleDataWriter: No leaks found (test output)

+

TestSimpleImpedanceProblem: No leaks found (test output)

+

TestSimpleLinearEllipticSolver: No leaks found (test output)

+

TestSimpleLinearParabolicSolver: No leaks found (test output)

+

TestSimpleNonlinearEllipticSolver: No leaks found (test output)

+

TestSimpleTargetAreaModifier: No leaks found (test output)

+

TestSimulationTime: No leaks found (test output)

+

TestSimulationsWithEllipticBoxDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithEllipticGrowingDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithParabolicBoxDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithParabolicGrowingDomainPdeModifier: No leaks found (test output)

+

TestSingleOdeWntCellCycleModel: No leaks found (test output)

+

TestSloughingCellKillers: No leaks found (test output)

+

TestSolveLaplacianWithQuadratics: No leaks found (test output)

+

TestSolvingCoupledPdes: No leaks found (test output)

+

TestSolvingNonlinearPdesTutorial: No leaks found (test output)

+

TestSolvingOdesTutorial: No leaks found (test output)

+

TestSolvingStiffOdeSystems: No leaks found (test output)

+

TestSpiralWaveAndPhase: No leaks found (test output)

+

TestSteadyStateRunner: No leaks found (test output)

+

TestStepSizeException: No leaks found (test output)

+

TestStimulus: No leaks found (test output)

+

TestStimulusBoundaryCondition: No leaks found (test output)

+

TestStimulusFactory: No leaks found (test output)

+

TestStokesFlowAssembler: No leaks found (test output)

+

TestStokesFlowSolver: No leaks found (test output)

+

TestStreeterFibreGenerator: No leaks found (test output)

+

TestT2SwapCellKiller: No leaks found (test output)

+

TestTargetAreaLinearGrowthModifier: No leaks found (test output)

+

TestTetrahedralMesh: No leaks found (test output)

+

TestTimeAdaptivityController: No leaks found (test output)

+

TestTimeStepper: No leaks found (test output)

+

TestTimer: No leaks found (test output)

+

TestToroidal2dMesh: No leaks found (test output)

+

TestToroidal2dVertexMesh: No leaks found (test output)

+

TestToroidalHoneycombMeshGenerator: No leaks found (test output)

+

TestToroidalHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestTransformations: No leaks found (test output)

+

TestTrianglesMeshReader: No leaks found (test output)

+

TestTysonNovak2001OdeSystem: No leaks found (test output)

+

TestUblasCustomFunctions: No leaks found (test output)

+

TestVanLeeuwen2009WntSwatCellCycleOdeSystem: No leaks found (test output)

+

TestVentilationProblem: No leaks found (test output)

+

TestVertexBasedCellPopulation: No leaks found (test output)

+

TestVertexBasedCellPopulationForCrypt: No leaks found (test output)

+

TestVertexBasedDivisionRules: No leaks found (test output)

+

TestVertexCryptBoundaryForce: No leaks found (test output)

+

TestVertexElement: No leaks found (test output)

+

TestVertexMesh: No leaks found (test output)

+

TestVertexMeshReader: No leaks found (test output)

+

TestVertexMeshWriter: No leaks found (test output)

+

TestVisualizingWithParaviewTutorial: No leaks found (test output)

+

TestVoltageInterpolaterOntoMechanicsMesh: No leaks found (test output)

+

TestVolumeTrackingModifier: No leaks found (test output)

+

TestVoronoiVertexMeshGenerator: No leaks found (test output)

+

TestVtkMeshReader: No leaks found (test output)

+

TestVtkNonlinearElasticitySolutionWriter: No leaks found (test output)

+

TestWarnings: No leaks found (test output)

+

TestWntCellCycleOdeSystem: No leaks found (test output)

+

TestWntConcentration: No leaks found (test output)

+

TestWritingPdeSolversTutorial: No leaks found (test output)

+

TestWritingPdeSolversTwoTutorial: No leaks found (test output)

+

TestWritingTestsTutorial: No leaks found (test output)

+

TestXmlMeshWriters: No leaks found (test output)


+ + diff --git a/log-files/index.html b/log-files/index.html index 0ccec78287..789d0dcedc 100644 --- a/log-files/index.html +++ b/log-files/index.html @@ -15,6 +15,16 @@

Index of Valgrind Memcheck output

February 2024

+ + + + + +
+ 2024-02-21_13-45-57 + greenfcooper8472-patch-1 + 51ac4cda762ab11c62cb9f58f455f59448cc5a42 +
2024-02-21_13-06-57