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setup.py
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setup.py
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#!/usr/bin/env python
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
import os, glob
# TODO: add tests for required packages
# numpy, pyrex, matplotlib and scipy
# build the pure c++ part
# build the interface
cadda = Extension(
"cadda", # name of extension
[ "src/cadda.pyx", # filename of our Pyrex/Cython source
'src/cadda_parameters.cpp',
'src/cadda_io.cpp',
'src/cadda_optimise.cpp',
'src/cadda_index.cpp',
'src/cadda_convert.cpp',
'src/cadda_mst.cpp',
'src/gzstream.C'],
library_dirs=[],
include_dirs=["src",],
libraries=["z"],
language="c++", # this causes Pyrex/Cython to create C++ source
)
Components = Extension(
"Components", # name of extension
[ "src/Components.pyx", # filename of our Pyrex/Cython source
'src/connected_components.cpp'],
library_dirs=[],
libraries=[],
language="c++", # this causes Pyrex/Cython to create C++ source
)
scripts = [ os.path.basename(x) for x in glob.glob("lib/*.pl") + glob.glob("lib/[a-z]*.py") ]
setup(name='Adda',
version='1.0',
description='ADDA - automatic domain detection algorithm',
author='Andreas Heger',
author_email='andreas.heger@helsinki.fi',
url='http://wwwfgu.anat.ox.ac.uk/~andreas',
packages = ["Adda",],
package_dir = {'Adda': 'lib' },
package_data = { "Adda" : scripts },
scripts=['scripts/adda.py',
'scripts/adda_build.py',
'scripts/adda_annotate.py',
'scripts/adda_view_graph.py',
],
ext_modules=[cadda, Components ],
cmdclass = {'build_ext': build_ext}
)